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Conserved domains on  [gi|576067852|ref|NP_001276629|]
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proline-rich transmembrane protein 3 isoform a precursor [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PHA03247 super family cl33720
large tegument protein UL36; Provisional
64-464 9.81e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.94  E-value: 9.81e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852   64 SGDPQARAEGPKKPADPYLGPALHGPKAAPGVQGERLLRADDLQLARAFTSQGWTGP--PDS----QELLEPEAPEPHPV 137
Cdd:PHA03247 2630 SPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRaaRPTvgslTSLADPPPPPPTPE 2709
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852  138 RAPRlTLVTTTPSSLLSAAILSTASQKPGGTAGQQPARNeelimvkAETHITQASPWDFQGSSHTPVPETDAVRTLVLGK 217
Cdd:PHA03247 2710 PAPH-ALVSATPLPPGPAAARQASPALPAAPAPPAVPAG-------PATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR 2781
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852  218 QGGHEQGFQEAVQGPLL-TQQDPVVPGVGSTPPVKVESTPEPGAQLDLALVRSLPLPEGLPAEPPKTGAGDTWEVSSLGP 296
Cdd:PHA03247 2782 RLTRPAVASLSESRESLpSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGD 2861
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852  297 QPEQtdllGGQDSPAPQPIPPSasdtsdghlRPAVSSLnGADPISPQRVRGAMEAPGTPKsfiPDLPNSAQAANGTESPV 376
Cdd:PHA03247 2862 VRRR----PPSRSPAAKPAAPA---------RPPVRRL-ARPAVSRSTESFALPPDQPER---PPQPQAPPPPQPQPQPP 2924
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852  377 RALQPDEAEDWPGRPQSHPPAPPVQAPSTSRRGLVRVTTQRALGQPLPPEPSASSIVPIPASSPPANATaPPLRWGPLRR 456
Cdd:PHA03247 2925 PPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASST-PPLTGHSLSR 3003

                  ....*...
gi 576067852  457 VLSFSWEL 464
Cdd:PHA03247 3004 VSSWASSL 3011
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
64-464 9.81e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.94  E-value: 9.81e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852   64 SGDPQARAEGPKKPADPYLGPALHGPKAAPGVQGERLLRADDLQLARAFTSQGWTGP--PDS----QELLEPEAPEPHPV 137
Cdd:PHA03247 2630 SPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRaaRPTvgslTSLADPPPPPPTPE 2709
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852  138 RAPRlTLVTTTPSSLLSAAILSTASQKPGGTAGQQPARNeelimvkAETHITQASPWDFQGSSHTPVPETDAVRTLVLGK 217
Cdd:PHA03247 2710 PAPH-ALVSATPLPPGPAAARQASPALPAAPAPPAVPAG-------PATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR 2781
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852  218 QGGHEQGFQEAVQGPLL-TQQDPVVPGVGSTPPVKVESTPEPGAQLDLALVRSLPLPEGLPAEPPKTGAGDTWEVSSLGP 296
Cdd:PHA03247 2782 RLTRPAVASLSESRESLpSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGD 2861
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852  297 QPEQtdllGGQDSPAPQPIPPSasdtsdghlRPAVSSLnGADPISPQRVRGAMEAPGTPKsfiPDLPNSAQAANGTESPV 376
Cdd:PHA03247 2862 VRRR----PPSRSPAAKPAAPA---------RPPVRRL-ARPAVSRSTESFALPPDQPER---PPQPQAPPPPQPQPQPP 2924
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852  377 RALQPDEAEDWPGRPQSHPPAPPVQAPSTSRRGLVRVTTQRALGQPLPPEPSASSIVPIPASSPPANATaPPLRWGPLRR 456
Cdd:PHA03247 2925 PPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASST-PPLTGHSLSR 3003

                  ....*...
gi 576067852  457 VLSFSWEL 464
Cdd:PHA03247 3004 VSSWASSL 3011
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
64-464 9.81e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.94  E-value: 9.81e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852   64 SGDPQARAEGPKKPADPYLGPALHGPKAAPGVQGERLLRADDLQLARAFTSQGWTGP--PDS----QELLEPEAPEPHPV 137
Cdd:PHA03247 2630 SPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRaaRPTvgslTSLADPPPPPPTPE 2709
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852  138 RAPRlTLVTTTPSSLLSAAILSTASQKPGGTAGQQPARNeelimvkAETHITQASPWDFQGSSHTPVPETDAVRTLVLGK 217
Cdd:PHA03247 2710 PAPH-ALVSATPLPPGPAAARQASPALPAAPAPPAVPAG-------PATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR 2781
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852  218 QGGHEQGFQEAVQGPLL-TQQDPVVPGVGSTPPVKVESTPEPGAQLDLALVRSLPLPEGLPAEPPKTGAGDTWEVSSLGP 296
Cdd:PHA03247 2782 RLTRPAVASLSESRESLpSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGD 2861
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852  297 QPEQtdllGGQDSPAPQPIPPSasdtsdghlRPAVSSLnGADPISPQRVRGAMEAPGTPKsfiPDLPNSAQAANGTESPV 376
Cdd:PHA03247 2862 VRRR----PPSRSPAAKPAAPA---------RPPVRRL-ARPAVSRSTESFALPPDQPER---PPQPQAPPPPQPQPQPP 2924
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852  377 RALQPDEAEDWPGRPQSHPPAPPVQAPSTSRRGLVRVTTQRALGQPLPPEPSASSIVPIPASSPPANATaPPLRWGPLRR 456
Cdd:PHA03247 2925 PPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASST-PPLTGHSLSR 3003

                  ....*...
gi 576067852  457 VLSFSWEL 464
Cdd:PHA03247 3004 VSSWASSL 3011
PRK10263 PRK10263
DNA translocase FtsK; Provisional
237-449 3.53e-05

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 47.77  E-value: 3.53e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852  237 QDPVVPGVGSTP--PVkVESTPEPGAQLDLALVRslPLPEGLPAEP----PKTGAGDTWEvSSLGPQPEQTDLLGGQDSP 310
Cdd:PRK10263  342 QTPPVASVDVPPaqPT-VAWQPVPGPQTGEPVIA--PAPEGYPQQSqyaqPAVQYNEPLQ-QPVQPQQPYYAPAAEQPAQ 417
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852  311 APQPIPPSASDTSDGHLRPAVSSLNGADPISPQRvRGAMEAPGTPKSFIPDLPNSAQAANGTESPVRALQPDEAEDWPGR 390
Cdd:PRK10263  418 QPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEE-QQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVV 496
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852  391 PQSHPPAPPVQAPSTSRRGLVRVTTQRALG-QPLPpEPSASSIVPIPASSPPANATAPPL 449
Cdd:PRK10263  497 EETKPARPPLYYFEEVEEKRAREREQLAAWyQPIP-EPVKEPEPIKSSLKAPSVAAVPPV 555
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
67-456 1.08e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 43.24  E-value: 1.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852   67 PQARAEGPKKPADPYLGPalhgPKAAPGVQGERLLRADDLQLARAFTSQGWTGPPDSqellePEAPEPHPVRAPRltlVT 146
Cdd:PHA03307   22 PRPPATPGDAADDLLSGS----QGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPG-----PGTEAPANESRST---PT 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852  147 TTPSSLLSAAILSTASQKPGGTAGQQPARNEELIMVKAETHITQASPWDFQGSSHTPVPETDAVRTLVLG--KQGGHEQG 224
Cdd:PHA03307   90 WSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPaaVASDAASS 169
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852  225 FQEAVQGPLLTQQDPVVPGVGSTPPVKVESTPEPGAQLDLALVRSLPLPEGLPAePPKTGAGDTWEVSSLGPQPEQTDLL 304
Cdd:PHA03307  170 RQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPA-PGRSAADDAGASSSDSSSSESSGCG 248
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852  305 GGQDSPAPQPIP-----PSASDTSDGHLRPAVSSLNGAdPISPQRVRGAMEAPGTPKSFIPDLPNSAQAANGTESPVRAL 379
Cdd:PHA03307  249 WGPENECPLPRPapitlPTRIWEASGWNGPSSRPGPAS-SSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSS 327
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852  380 QPDEAEDWPGRPQSHPPAPPVQAPSTSR---RGLVRVTTQRALGQPLPPEPSASSIVPIPASSPPANATAPPLRWGPLRR 456
Cdd:PHA03307  328 STSSSSESSRGAAVSPGPSPSRSPSPSRpppPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRF 407
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
250-448 2.48e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.90  E-value: 2.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852 250 VKVESTPEPGAQLDLALVRSLPLPEGLPAEPPKTGAGDTWEVSSlGPQPEQTDLLGGQDSPAPQPIPPSASDTSDGHLRP 329
Cdd:PRK07764 582 WQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPA-APAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVP 660
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852 330 AVSslngaDPISPQRVRGAMEAPGTPKSFIPDLPNSAQAANGTESPVRALQPDEAEDWPGRPQSHPPAPPVQAPSTSRRG 409
Cdd:PRK07764 661 DAS-----DGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAA 735
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 576067852 410 lvrvttqrALGQPLPPEPSASSIVPIPASSPPANATAPP 448
Cdd:PRK07764 736 --------DDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
218-450 2.56e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.79  E-value: 2.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852 218 QGGHEQGFQEAVQGPLLT-----QQDPVVPGVGSTPPVKVESTPEPGAQLDLALVRSLPLPEGLPAEPPKTGAGDTWEVS 292
Cdd:PRK12323 367 QSGGGAGPATAAAAPVAQpapaaAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG 446
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852 293 SLGPQPEQTDLLGGQDSPAPQPIPPSASDTSDGhlrPAVSSLNGADPISPQRVRGAMEAPGTPKSFIPDLPNSAQAANGT 372
Cdd:PRK12323 447 APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAA---PARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVA 523
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 576067852 373 ESPVRalqPDEAEDWPGRPQSHPPAPPVQAPSTSRRGLVRVTtqralgqPLPPEPSASSIVPIPASSPPANATAPPLR 450
Cdd:PRK12323 524 ESIPD---PATADPDDAFETLAPAPAAAPAPRAAAATEPVVA-------PRPPRASASGLPDMFDGDWPALAARLPVR 591
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
329-453 2.75e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 41.76  E-value: 2.75e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 576067852 329 PAVSSLNGADPISPQRVRGAMEAPGTPKSFIPDLPNSAQAANGTESPVRALQPDEAEDWPGRPQSHPPAPPVQAPS---T 405
Cdd:PRK07003 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATadrG 439
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 576067852 406 SRRGLVRVTTQRALGQPLPPEPSASSIVPIPASSP-----PANATAPPLRWGP 453
Cdd:PRK07003 440 DDAADGDAPVPAKANARASADSRCDERDAQPPADSgsasaPASDAPPDAAFEP 492
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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