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Conserved domains on  [gi|665389824|ref|NP_001284912|]
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ubiquitin specific protease 30, isoform B [Drosophila melanogaster]

Protein Classification

Peptidase_C19 and Peptidase_C19F domain-containing protein( domain architecture ID 10245575)

Peptidase_C19 and Peptidase_C19F domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
323-548 3.87e-61

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 201.83  E-value: 3.87e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 323 SQVAHPFQGAMGAQIVCNGCGSKSAVRYDKFDSITLNLPPQRR-TGLSLGHLLSEYITSEDLSDVKCDSCnettthtkSV 401
Cdd:cd02662   50 QLLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSSgSGTTLEHCLDDFLSTEIIDDYKCDRC--------QT 121
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 402 TFAKLPACLCIHVARTVWLPTGQVCKRKDYVHFPESLsmapysfvqphlnsqagtpwgstmslyssslpmnngvgggegf 481
Cdd:cd02662  122 VIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL------------------------------------------- 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 482 gtmfPKNLYRLLAVVVHSGEANSGHFVTYRRGSLR------------------NAHRWYYTSDTIVREVSIDEVL-SVPA 542
Cdd:cd02662  159 ----PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFskdkepgsfvrmregpssTSHPWWRISDTTVKEVSESEVLeQKSA 234

                 ....*.
gi 665389824 543 YLLFYD 548
Cdd:cd02662  235 YMLFYE 240
Peptidase_C19 super family cl02553
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
39-139 2.45e-05

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


The actual alignment was detected with superfamily member cd02671:

Pssm-ID: 470612 [Multi-domain]  Cd Length: 332  Bit Score: 46.42  E-value: 2.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824  39 AGLHNFGLTCFLNTLLQAMAACPQFIAWLQLYNNASPDRKSLITSMLNTLEVVNGTHATLRGDpyspgavlRALNALGWV 118
Cdd:cd02671   25 VGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISSVEQLQSSFLLNPEKYNDELANQAPR--------RLLNALREV 96
                         90       100
                 ....*....|....*....|....*
gi 665389824 119 IPQEE----HDAHELFHVLLTCLEE 139
Cdd:cd02671   97 NPMYEgylqHDAQEVLQCILGNIQE 121
 
Name Accession Description Interval E-value
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
323-548 3.87e-61

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 201.83  E-value: 3.87e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 323 SQVAHPFQGAMGAQIVCNGCGSKSAVRYDKFDSITLNLPPQRR-TGLSLGHLLSEYITSEDLSDVKCDSCnettthtkSV 401
Cdd:cd02662   50 QLLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSSgSGTTLEHCLDDFLSTEIIDDYKCDRC--------QT 121
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 402 TFAKLPACLCIHVARTVWLPTGQVCKRKDYVHFPESLsmapysfvqphlnsqagtpwgstmslyssslpmnngvgggegf 481
Cdd:cd02662  122 VIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL------------------------------------------- 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 482 gtmfPKNLYRLLAVVVHSGEANSGHFVTYRRGSLR------------------NAHRWYYTSDTIVREVSIDEVL-SVPA 542
Cdd:cd02662  159 ----PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFskdkepgsfvrmregpssTSHPWWRISDTTVKEVSESEVLeQKSA 234

                 ....*.
gi 665389824 543 YLLFYD 548
Cdd:cd02662  235 YMLFYE 240
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
304-547 2.01e-30

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 121.01  E-value: 2.01e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824  304 LERLHRGPGRVSIWSNmmPSQVAHPFQGAMGAQIVCNGCGSKSAVRYDKFDSITLNLPPQRRTGLSLG----HLLSEYIT 379
Cdd:pfam00443  99 LDGLHEDLNGNHSTEN--ESLITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLqicfLQFSKLEE 176
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824  380 SEDLSDVKCDSCNETTTHTKSVTFAKLPACLCIHVAR---TVWLPTgqvcKRKDYVHFPESLSMAPYsfVQPHLNSQAGt 456
Cdd:pfam00443 177 LDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRfsyNRSTWE----KLNTEVEFPLELDLSRY--LAEELKPKTN- 249
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824  457 pwgstmslyssslpmnngvgggegfgtmfPKNLYRLLAVVVHSGEANSGHFVTYRRGSLRNahRWYYTSDTIVREVSID- 535
Cdd:pfam00443 250 -----------------------------NLQDYRLVAVVVHSGSLSSGHYIAYIKAYENN--RWYKFDDEKVTEVDEEt 298
                         250
                  ....*....|..
gi 665389824  536 EVLSVPAYLLFY 547
Cdd:pfam00443 299 AVLSSSAYILFY 310
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
368-549 5.23e-08

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 56.04  E-value: 5.23e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 368 LSLGHLLSEYITSEDL--SD-VKCDSCNETTTHTKSVTFAKLPACLCIHVARTVWLPTGQVcKRKDYVHFPES---LSMA 441
Cdd:COG5560  675 ITLQDCLNEFSKPEQLglSDsWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRD-KIDDLVEYPIDdldLSGV 753
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 442 PYSFVQPHLnsqagtpwgstmslyssslpmnngvgggegfgtmfpknLYRLLAVVVHSGEANSGHFVTYRRGSLRNahRW 521
Cdd:COG5560  754 EYMVDDPRL--------------------------------------IYDLYAVDNHYGGLSGGHYTAYARNFANN--GW 793
                        170       180
                 ....*....|....*....|....*...
gi 665389824 522 YYTSDTIVREVSIDEVLSVPAYLLFYDR 549
Cdd:COG5560  794 YLFDDSRITEVDPEDSVTSSAYVLFYRR 821
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
39-139 2.45e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 46.42  E-value: 2.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824  39 AGLHNFGLTCFLNTLLQAMAACPQFIAWLQLYNNASPDRKSLITSMLNTLEVVNGTHATLRGDpyspgavlRALNALGWV 118
Cdd:cd02671   25 VGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISSVEQLQSSFLLNPEKYNDELANQAPR--------RLLNALREV 96
                         90       100
                 ....*....|....*....|....*
gi 665389824 119 IPQEE----HDAHELFHVLLTCLEE 139
Cdd:cd02671   97 NPMYEgylqHDAQEVLQCILGNIQE 121
 
Name Accession Description Interval E-value
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
323-548 3.87e-61

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 201.83  E-value: 3.87e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 323 SQVAHPFQGAMGAQIVCNGCGSKSAVRYDKFDSITLNLPPQRR-TGLSLGHLLSEYITSEDLSDVKCDSCnettthtkSV 401
Cdd:cd02662   50 QLLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSSgSGTTLEHCLDDFLSTEIIDDYKCDRC--------QT 121
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 402 TFAKLPACLCIHVARTVWLPTGQVCKRKDYVHFPESLsmapysfvqphlnsqagtpwgstmslyssslpmnngvgggegf 481
Cdd:cd02662  122 VIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL------------------------------------------- 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 482 gtmfPKNLYRLLAVVVHSGEANSGHFVTYRRGSLR------------------NAHRWYYTSDTIVREVSIDEVL-SVPA 542
Cdd:cd02662  159 ----PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFskdkepgsfvrmregpssTSHPWWRISDTTVKEVSESEVLeQKSA 234

                 ....*.
gi 665389824 543 YLLFYD 548
Cdd:cd02662  235 YMLFYE 240
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
304-547 4.28e-44

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 157.26  E-value: 4.28e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 304 LERLHR---GPGRVSIWSNMMPSQVAHPFQGAMGAQIVCNGCGSKSaVRYDKFDSITLNLPPQRRTGLSLGHLLSEYITS 380
Cdd:cd02257   33 LDKLHEelkKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHES-VSTEPELFLSLPLPVKGLPQVSLEDCLEKFFKE 111
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 381 EDLSDVKCDSCN--ETTTHTKSVTFAKLPACLCIHVARTVWLPTGQVCKRKDYVHFPESLSMAPYsfvqphlnsqagtpw 458
Cdd:cd02257  112 EILEGDNCYKCEkkKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDLSPY--------------- 176
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 459 gstmslYSSSLPMNNGVGggegfgtmfPKNLYRLLAVVVHSGE-ANSGHFVTYRRGSLRNahRWYYTSDTIVREVSIDEV 537
Cdd:cd02257  177 ------LSEGEKDSDSDN---------GSYKYELVAVVVHSGTsADSGHYVAYVKDPSDG--KWYKFNDDKVTEVSEEEV 239
                        250
                 ....*....|....*
gi 665389824 538 LSVP-----AYLLFY 547
Cdd:cd02257  240 LEFGslsssAYILFY 254
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
304-547 2.01e-30

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 121.01  E-value: 2.01e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824  304 LERLHRGPGRVSIWSNmmPSQVAHPFQGAMGAQIVCNGCGSKSAVRYDKFDSITLNLPPQRRTGLSLG----HLLSEYIT 379
Cdd:pfam00443  99 LDGLHEDLNGNHSTEN--ESLITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGDSAELKTASLqicfLQFSKLEE 176
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824  380 SEDLSDVKCDSCNETTTHTKSVTFAKLPACLCIHVAR---TVWLPTgqvcKRKDYVHFPESLSMAPYsfVQPHLNSQAGt 456
Cdd:pfam00443 177 LDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRfsyNRSTWE----KLNTEVEFPLELDLSRY--LAEELKPKTN- 249
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824  457 pwgstmslyssslpmnngvgggegfgtmfPKNLYRLLAVVVHSGEANSGHFVTYRRGSLRNahRWYYTSDTIVREVSID- 535
Cdd:pfam00443 250 -----------------------------NLQDYRLVAVVVHSGSLSSGHYIAYIKAYENN--RWYKFDDEKVTEVDEEt 298
                         250
                  ....*....|..
gi 665389824  536 EVLSVPAYLLFY 547
Cdd:pfam00443 299 AVLSSSAYILFY 310
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
304-547 6.41e-29

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 117.09  E-value: 6.41e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 304 LERLHRGPGRVS--IWSNMMPSQVAHP-FQGAMGAQIVCNGCGSKSaVRYDKFDSITLNLPPQRRTGLSLGHL------- 373
Cdd:cd02660   99 LDQLHTHYGGDKneANDESHCNCIIHQtFSGSLQSSVTCQRCGGVS-TTVDPFLDLSLDIPNKSTPSWALGESgvsgtpt 177
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 374 ----LSEYITSEDL--SDVKCDSCNETTTHTKSVTFAKLPACLCIHVARTVWLPTGQVCKRKDYVHFPESLSMAPYSFVQ 447
Cdd:cd02660  178 lsdcLDRFTRPEKLgdFAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTPYTSSS 257
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 448 PHlnsqagtpwgSTMSLYSSSlpmnngvgggegfgtmfPKNLYRLLAVVVHSGEANSGHFVTYRRGslrNAHRWYYTSDT 527
Cdd:cd02660  258 IG----------DTQDSNSLD-----------------PDYTYDLFAVVVHKGTLDTGHYTAYCRQ---GDGQWFKFDDA 307
                        250       260
                 ....*....|....*....|
gi 665389824 528 IVREVSIDEVLSVPAYLLFY 547
Cdd:cd02660  308 MITRVSEEEVLKSQAYLLFY 327
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
323-547 4.10e-27

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 109.30  E-value: 4.10e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 323 SQVAHPFQGAMGAQIVCNGCGSKSaVRYDKFDSITLNLPPQRR--TGLSLGHLLSEYITSEDLSD---VKCDSCNETTTH 397
Cdd:cd02674   38 SIIVDLFQGQLKSRLTCLTCGKTS-TTFEPFTYLSLPIPSGSGdaPKVTLEDCLRLFTKEETLDGdnaWKCPKCKKKRKA 116
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 398 TKSVTFAKLPACLCIHVARTVWLPTGQVcKRKDYVHFP-ESLSMAPYsfvqphlnsqagtpwgstmsLYSSSLPMNNgvg 476
Cdd:cd02674  117 TKKLTISRLPKVLIIHLKRFSFSRGSTR-KLTTPVTFPlNDLDLTPY--------------------VDTRSFTGPF--- 172
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 665389824 477 ggegfgtmfpknLYRLLAVVVHSGEANSGHFVTYRRGSLRNahRWYYTSDTIVREVSIDEVLSVPAYLLFY 547
Cdd:cd02674  173 ------------KYDLYAVVNHYGSLNGGHYTAYCKNNETN--DWYKFDDSRVTKVSESSVVSSSAYILFY 229
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
329-547 7.77e-26

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 107.09  E-value: 7.77e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 329 FQGAMGAQIVCNGCGSKSAVrYDKFDSITLNLPPQRRTGLSLGHLLSEYITSEDLSDVKCDSCNETTTHTKSVTFAKLPA 408
Cdd:cd02667   73 FGGELTSTIMCESCGTVSLV-YEPFLDLSLPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTKAKKQYLISKLPP 151
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 409 CLCIHVARTVWLPTGQVCKRKDYVHFPESLSMAPysFVQPHLNSQAGtpwgstmslySSSLpmnngvgggegfgtmfpkn 488
Cdd:cd02667  152 VLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAP--FCDPKCNSSED----------KSSV------------------- 200
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 665389824 489 LYRLLAVVVHSGEANSGHFVTYRRGSLRNAH-------------------RWYYTSDTIVREVSIDEVLSVPAYLLFY 547
Cdd:cd02667  201 LYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRlsdltkskpaadeagpgsgQWYYISDSDVREVSLEEVLKSEAYLLFY 278
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
325-547 1.49e-23

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 101.20  E-value: 1.49e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 325 VAHPFQGAMGAQIVCNGCGSKSavryDKFDSItLNLPPQRRTGLSLGHLLSEYITSEDLSD---VKCDSCNETTTHTKSV 401
Cdd:cd02661  124 VQQIFGGYLRSQVKCLNCKHVS----NTYDPF-LDLSLDIKGADSLEDALEQFTKPEQLDGenkYKCERCKKKVKASKQL 198
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 402 TFAKLPACLCIHVARTVWLPTGQVCKRkdyVHFPESLSMAPYsfvqphlnsqagtpwgstMSLYSSSLPMnngvgggegf 481
Cdd:cd02661  199 TIHRAPNVLTIHLKRFSNFRGGKINKQ---ISFPETLDLSPY------------------MSQPNDGPLK---------- 247
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 665389824 482 gtmfpknlYRLLAVVVHSG-EANSGHFVTYRRGSLRnahRWYYTSDTIVREVSIDEVLSVPAYLLFY 547
Cdd:cd02661  248 --------YKLYAVLVHSGfSPHSGHYYCYVKSSNG---KWYNMDDSKVSPVSIETVLSQKAYILFY 303
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
287-549 1.17e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 93.09  E-value: 1.17e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 287 QQQDeglnrrVSSSCRSLerlhrgpgrVSIWSNMMPSQVAHP-----FQGAMGAQIVCNGCGSKSAvRYDKFDSITLNLP 361
Cdd:cd02659   85 EQHD------VQEFFRVL---------FDKLEEKLKGTGQEGliknlFGGKLVNYIICKECPHESE-REEYFLDLQVAVK 148
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 362 PQRrtglSLGHLLSEYITSEDLSD---VKCDSCNETTTHTKSVTFAKLPACLCIHVAR-TVWLPTGQVCKRKDYVHFPES 437
Cdd:cd02659  149 GKK----NLEESLDAYVQGETLEGdnkYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRfEFDFETMMRIKINDRFEFPLE 224
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 438 LSMAPYsfVQPHLNSQAGTPWGSTMSLYssslpmnngvgggegfgtmfpknLYRLLAVVVHSGEANSGHFVTYRRGSLRN 517
Cdd:cd02659  225 LDMEPY--TEKGLAKKEGDSEKKDSESY-----------------------IYELHGVLVHSGDAHGGHYYSYIKDRDDG 279
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 665389824 518 ahRWYYTSDTIVREVSIDEVL--------------SVP--------AYLLFYDR 549
Cdd:cd02659  280 --KWYKFNDDVVTPFDPNDAEeecfggeetqktydSGPrafkrttnAYMLFYER 331
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
318-531 5.05e-14

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 73.22  E-value: 5.05e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 318 SNMMPSQvahpFQGAMGAQIVCNGCGSKSAVRyDKFDSITLNLppqrRTGLSLGHLLSEYITSEDLSDVK---CDSCNET 394
Cdd:cd02668  115 KNIVQDL----FRGEYSYVTQCSKCGRESSLP-SKFYELELQL----KGHKTLEECIDEFLKEEQLTGDNqyfCESCNSK 185
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 395 TTHTKSVTFAKLPACLCIHVARTVWLP-TGQVCKRKDYVHFPESLSMAPYSFVQPHLNSqagtpwgstmslyssslpmnn 473
Cdd:cd02668  186 TDATRRIRLTTLPPTLNFQLLRFVFDRkTGAKKKLNASISFPEILDMGEYLAESDEGSY--------------------- 244
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 665389824 474 gvgggegfgtmfpknLYRLLAVVVHSG-EANSGHFVTyrrgSLRNAHR--WYYTSDTIVRE 531
Cdd:cd02668  245 ---------------VYELSGVLIHQGvSAYSGHYIA----HIKDEQTgeWYKFNDEDVEE 286
Peptidase_C19Q cd02673
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
490-548 1.01e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239138 [Multi-domain]  Cd Length: 245  Bit Score: 59.08  E-value: 1.01e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 665389824 490 YRLLAVVVHSGEA-NSGHFVTYRRgSLRNAHRWYYTSDTIVREVSIDEVL---SVPAYLLFYD 548
Cdd:cd02673  184 YSLVAVICHLGESpYDGHYIAYTK-ELYNGSSWLYCSDDEIRPVSKNDVStnaRSSGYLIFYD 245
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
276-547 3.05e-08

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 55.58  E-value: 3.05e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 276 RSSRPR--LPQSQQQQDEGLnrrvsssCRSLERLHrgpgrvsiwsnmmpSQVAHPFQGAMGAQIVCNGCGSKSAvRYDKF 353
Cdd:cd02664   69 EASRPPwfTPGSQQDCSEYL-------RYLLDRLH--------------TLIEKMFGGKLSTTIRCLNCNSTSA-RTERF 126
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 354 DSITLNLPpqrrtglSLGHLLSEYITSEDL---SDVKCDSCNETTTHTKSVTFAKLPACLCIHVARTVWLP-TGQVCKRK 429
Cdd:cd02664  127 RDLDLSFP-------SVQDLLNYFLSPEKLtgdNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQkTHVREKIM 199
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 430 DYVHFPESLSMapysfvqphlnsqagtPWGSTMSLYSSSLPMNNGVGGGEGFGTMFPKNlYRLLAVVVHSG-EANSGHFV 508
Cdd:cd02664  200 DNVSINEVLSL----------------PVRVESKSSESPLEKKEEESGDDGELVTRQVH-YRLYAVVVHSGySSESGHYF 262
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 665389824 509 TYRR---GSLRNAHR---------------WYYTSDTIVREVS---IDEVLSVP----AYLLFY 547
Cdd:cd02664  263 TYARdqtDADSTGQEcpepkdaeendesknWYLFNDSRVTFSSfesVQNVTSRFpkdtPYILFY 326
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
368-549 5.23e-08

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 56.04  E-value: 5.23e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 368 LSLGHLLSEYITSEDL--SD-VKCDSCNETTTHTKSVTFAKLPACLCIHVARTVWLPTGQVcKRKDYVHFPES---LSMA 441
Cdd:COG5560  675 ITLQDCLNEFSKPEQLglSDsWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRD-KIDDLVEYPIDdldLSGV 753
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 442 PYSFVQPHLnsqagtpwgstmslyssslpmnngvgggegfgtmfpknLYRLLAVVVHSGEANSGHFVTYRRGSLRNahRW 521
Cdd:COG5560  754 EYMVDDPRL--------------------------------------IYDLYAVDNHYGGLSGGHYTAYARNFANN--GW 793
                        170       180
                 ....*....|....*....|....*...
gi 665389824 522 YYTSDTIVREVSIDEVLSVPAYLLFYDR 549
Cdd:COG5560  794 YLFDDSRITEVDPEDSVTSSAYVLFYRR 821
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
329-547 3.91e-07

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 51.94  E-value: 3.91e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 329 FQGAMGAQIVCNGCGSksaVRYDKFDSITLNLPPQRRTGLSLGHLLSEYI-----------TSEDLSDVKCDSCNETTTH 397
Cdd:cd02658  130 FKFMIEDRLECLSCKK---VKYTSELSEILSLPVPKDEATEKEEGELVYEpvpledclkayFAPETIEDFCSTCKEKTTA 206
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 398 TKSVTFAKLPACLCIHVARTVWLPTGQVCKRKDYVHFPESLSMAPysfvqphlnsqagtpwgstmslyssslpmnngvgg 477
Cdd:cd02658  207 TKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEELGPGK----------------------------------- 251
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 665389824 478 gegfgtmfpknlYRLLAVVVHSG-EANSGHFVTYRRGSLRNAHRWYYTSDTIVREVSIDEVLSVPAYLLFY 547
Cdd:cd02658  252 ------------YELIAFISHKGtSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFY 310
Peptidase_C19I cd02665
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
485-547 3.27e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239130 [Multi-domain]  Cd Length: 228  Bit Score: 48.32  E-value: 3.27e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 665389824 485 FPKNL----YRLLAVVVHSGEANSGHFVTYRRGslRNAHRWYYTSDTIVREVSIDEVLS--------VPAYLLFY 547
Cdd:cd02665  155 FPQIIqqvpYELHAVLVHEGQANAGHYWAYIYK--QSRQEWEKYNDISVTESSWEEVERdsfgggrnPSAYCLMY 227
Peptidase_C19J cd02666
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
490-538 4.51e-06

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239131 [Multi-domain]  Cd Length: 343  Bit Score: 49.03  E-value: 4.51e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 665389824 490 YRLLAVVVHSGEANSGHFVTYRRGSLRNAHRWYYtsDTIVREVSIDEVL 538
Cdd:cd02666  281 YRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYN--DETVTVVPASEVF 327
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
490-549 6.45e-06

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 48.26  E-value: 6.45e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 665389824 490 YRLLAVVVHSGEANSGHFVTYRRgslRNAHrWYYTSDTIVREVSIDEVLSVP---AYLLFYDR 549
Cdd:COG5533  225 YDLVGFVLHQGSLEGGHYIAYVK---KGGK-WEKANDSDVTPVSEEEAINEKaknAYLYFYER 283
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
374-538 1.17e-05

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 48.33  E-value: 1.17e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824  374 LSEYITSEDLSDvkcDSCNETTTH-----TKSVTFAKLPACLCIHVAR-TVWLPTGQVCKRKDYVHFPESLSMAPYsfvq 447
Cdd:COG5077   344 FRRYIQVETLDG---DNRYNAEKHglqdaKKGVIFESLPPVLHLQLKRfEYDFERDMMVKINDRYEFPLEIDLLPF---- 416
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824  448 phlnsqagtpwgstmsLYSSSLPMNNGVGGgegfgtmfpknlYRLLAVVVHSGEANSGHFVTYRRGSLRNahRWYYTSDT 527
Cdd:COG5077   417 ----------------LDRDADKSENSDAV------------YVLYGVLVHSGDLHEGHYYALLKPEKDG--RWYKFDDT 466
                         170
                  ....*....|.
gi 665389824  528 IVREVSIDEVL 538
Cdd:COG5077   467 RVTRATEKEVL 477
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
39-139 2.45e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 46.42  E-value: 2.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824  39 AGLHNFGLTCFLNTLLQAMAACPQFIAWLQLYNNASPDRKSLITSMLNTLEVVNGTHATLRGDpyspgavlRALNALGWV 118
Cdd:cd02671   25 VGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISSVEQLQSSFLLNPEKYNDELANQAPR--------RLLNALREV 96
                         90       100
                 ....*....|....*....|....*
gi 665389824 119 IPQEE----HDAHELFHVLLTCLEE 139
Cdd:cd02671   97 NPMYEgylqHDAQEVLQCILGNIQE 121
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
388-547 2.06e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 43.73  E-value: 2.06e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 388 CDSCNETTTHTKSVTFAKLPACLCIHVARtvwlptgqvckrkdyvhFPESLSMAPYSFVQPHLNSQAGTPWgsTMSLYSS 467
Cdd:cd02671  203 CENCHHYTEAERSLLFDKLPEVITIHLKC-----------------FAANGSEFDCYGGLSKVNTPLLTPL--KLSLEEW 263
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824 468 SlpmnngvgggegfgTMFPKNLYRLLAVVVHSG-EANSGHFVTYRrgslrnahRWYYTSDTIVR---EVSIDEVLS---- 539
Cdd:cd02671  264 S--------------TKPKNDVYRLFAVVMHSGaTISSGHYTAYV--------RWLLFDDSEVKvteEKDFLEALSpnts 321
                        170
                 ....*....|
gi 665389824 540 --VPAYLLFY 547
Cdd:cd02671  322 stSTPYLLFY 331
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
40-150 1.76e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 40.78  E-value: 1.76e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824  40 GLHNFGLTCFLNTLLQAMAACPQFIAWLQLYNNASPDR----KSLITSMLNTLEVVNGTHatlrgDPYSPGAVlraLNAL 115
Cdd:cd02657    1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGAnqssDNLTNALRDLFDTMDKKQ-----EPVPPIEF---LQLL 72
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 665389824 116 GWVIPQ----------EEHDAHE----LFHVLLTCLEEEAIRPQPLGCL 150
Cdd:cd02657   73 RMAFPQfaekqnqggyAQQDAEEcwsqLLSVLSQKLPGAGSKGSFIDQL 121
UCH_1 pfam13423
Ubiquitin carboxyl-terminal hydrolase;
304-422 2.02e-03

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 463872 [Multi-domain]  Cd Length: 305  Bit Score: 40.33  E-value: 2.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665389824  304 LERLHRGPGRVSIWSNMMPSQVAHPFQGAMGAQIVCNGCGSKSaVRYDKFDSITLNLPPQ------RRTGLSLGHLLSEY 377
Cdd:pfam13423 107 LDQLSSEENSTPPNPSPAESPLEQLFGIDAETTIRCSNCGHES-VRESSTHVLDLIYPRKpssnnkKPPNQTFSSILKSS 185
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 665389824  378 ITSEDLSDVKCDSCNETTTHTKSVTFAKLPACLCIHVART-----------VWLPT 422
Cdd:pfam13423 186 LERETTTKAWCEKCKRYQPLESRRTVRNLPPVLSLNAALTneewrqlwktpGWLPP 241
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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