|
Name |
Accession |
Description |
Interval |
E-value |
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
416-1194 |
2.15e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 69.76 E-value: 2.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 416 VQDIERWQNEnARKLAEAA----RQHGIS-QNQLQQFQ--REELQRLYVHFNQVNESLAPQVPSvpqTTYNYQSSSSLTE 488
Cdd:pfam15921 87 VKDLQRRLNE-SNELHEKQkfylRQSVIDlQTKLQEMQmeRDAMADIRRRESQSQEDLRNQLQN---TVHELEAAKCLKE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 489 D-----NTKEQQrLEELIRQHNATIAALQnSIKTDQQRLKNLSIKYQGDMQsqTQWLRGEVARIGDLIKEQNEQVS---- 559
Cdd:pfam15921 163 DmledsNTQIEQ-LRKMMLSHEGVLQEIR-SILVDFEEASGKKIYEHDSMS--TMHFRSLGSAISKILRELDTEISylkg 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 560 -------KITAWQSSERSRLENILLQHRGSVEEvqqrinmdrnylqnLATKYQVSVEELEkwQKEELERLQVRG-QQQLE 631
Cdd:pfam15921 239 rifpvedQLEALKSESQNKIELLLQQHQDRIEQ--------------LISEHEVEITGLT--EKASSARSQANSiQSQLE 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 632 ehikdwqiSVSSNLRDIATQNKLTIDEFQNYIINDRSHLEEMARLYKVKVEEIEQWI---KSELKKFQSE--------GL 700
Cdd:pfam15921 303 --------IIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLvlaNSELTEARTErdqfsqesGN 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 701 LKGVEQELIQWQQKERERLQAIVQQ----------NSLTVEQLEVRIKNDQDHFFKLADKYKINVEDIQDWLKKELLRLQ 770
Cdd:pfam15921 375 LDDQLQKLLADLHKREKELSLEKEQnkrlwdrdtgNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQ 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 771 --SEGLVKAETLKEWQQQERAQISLLVQQ-----------------NKYSLDEFERKMLADRARLQELSNTYNVKVSEIe 831
Cdd:pfam15921 455 gkNESLEKVSSLTAQLESTKEMLRKVVEEltakkmtlessertvsdLTASLQEKERAIEATNAEITKLRSRVDLKLQEL- 533
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 832 QWIKSEGDRLQHegqLRMESQLNNWQKIERQRLLDLINknnlsiEEIESkiskdqthLYSLAQQHQvrveeieqwirqqi 911
Cdd:pfam15921 534 QHLKNEGDHLRN---VQTECEALKLQMAEKDKVIEILR------QQIEN--------MTQLVGQHG-------------- 582
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 912 qklQDQGLIEMQKlknwqlewrGNLTNMVQDRDFTVEEFHkwLLKDREQLQSLAMQHNVQIEEIEQFvkkeeqRFIGMGl 991
Cdd:pfam15921 583 ---RTAGAMQVEK---------AQLEKEINDRRLELQEFK--ILKDKKDAKIRELEARVSDLELEKV------KLVNAG- 641
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 992 lkpSEKLTNWQEV--ERLHLKNlaqqQYKSTEQLEARLRQDRELLERLARQYSVQVEEIESWMKQELARMRDEGQLQIDN 1069
Cdd:pfam15921 642 ---SERLRAVKDIkqERDQLLN----EVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNT 714
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1070 LTSWQLAERERLEALIKQNKQWSAEE-----LRAELEKDREHMQTMAFQYHTSVEEIEKWLQS----EIERLKQQGKLni 1140
Cdd:pfam15921 715 LKSMEGSDGHAMKVAMGMQKQITAKRgqidaLQSKIQFLEEAMTNANKEKHFLKEEKNKLSQElstvATEKNKMAGEL-- 792
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*.
gi 665404577 1141 EQLTAWQRTEQQRI--LSLLQQHSNITLEQFQAKVHNDRRFLMNLAEQHHVHIEEV 1194
Cdd:pfam15921 793 EVLRSQERRLKEKVanMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKEL 848
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
545-1161 |
1.06e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 545 ARIGDLIKEQNEQVSKI----------TAWQSSERSRLENILLQHRGSVEEVQQRINMDRNYLQNLATKYQVSVEELEKw 614
Cdd:COG1196 189 ERLEDILGELERQLEPLerqaekaeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEA- 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 615 QKEELERLQVRGQQQLEEHIKDWQI---SVSSNLRDIATQNKLTIDEFQNYIINDRSHLEEMARLYKVKVEEIEQwiksE 691
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYEllaELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL----E 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 692 LKKFQSEGLLKGVEQELIQwQQKERERLQAIVQQNSLTVEQLEVRIKNDQDHFFKLADKYKINVEDIQDwLKKELLRLQS 771
Cdd:COG1196 344 EELEEAEEELEEAEAELAE-AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA-LLERLERLEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 772 EGLVKAETLKEwQQQERAQISLLVQQNKYSLDEFERKMLADRARLQELSNTYNVKVSEIEQWIKSEGDRLQHEgQLRMES 851
Cdd:COG1196 422 ELEELEEALAE-LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL-LLLLEA 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 852 QLNNWQKIERQRLLDLINKNNLSIEEIESKISKDQTHLY----SLAQQHQVRVEEIEQWIRQQIQKLQDQGLIEMQKLKN 927
Cdd:COG1196 500 EADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAaleaALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPL 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 928 WQLEwRGNLTNMVQDRDFTVEEFHKWLLKDREQLQSLAMQHNVQIEEIEQFVKKEEQRFIGMGLLKPSEKLTNWQEVERL 1007
Cdd:COG1196 580 DKIR-ARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSA 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1008 HLKNLAQQQYKSTEQLEARLRQDRELLERLARQYSVQVEEIESWMKQELARMRDEGQLQIDNLTSWQLAERERLEALIKQ 1087
Cdd:COG1196 659 GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELL 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1088 NKQWSAEELRAELEKDREHmqtmafqyhtsVEEIEKWLQSEIERLKQQ----GKLN---IEQLTAwqrtEQQRILSLLQQ 1160
Cdd:COG1196 739 EELLEEEELLEEEALEELP-----------EPPDLEELERELERLEREiealGPVNllaIEEYEE----LEERYDFLSEQ 803
|
.
gi 665404577 1161 H 1161
Cdd:COG1196 804 R 804
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
424-1141 |
1.43e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 1.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 424 NENARKLAEAARQHGISQNQLQQFQrEELQRLYVHFNQVNESLAPQvpsvpQTTYNyqsssslteDNTKEQQRLEELIRQ 503
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELE-EKLEELRLEVSELEEEIEEL-----QKELY---------ALANEISRLEQQKQI 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 504 HNATIAALQNSIKTDQQRLKNLsikyqgdmQSQTQWLRGEVARIGDLIKEQNEQVSKITAWQSSERSRLENiLLQHRGSV 583
Cdd:TIGR02168 307 LRERLANLERQLEELEAQLEEL--------ESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE-LESRLEEL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 584 EEVQQRINMDRNYLQNLATKYQVSVEELEKwQKEELERLQVRGQQQLEEHIKDWQisvSSNLRDIATQnkltIDEFQNYI 663
Cdd:TIGR02168 378 EEQLETLRSKVAQLELQIASLNNEIERLEA-RLERLEDRRERLQQEIEELLKKLE---EAELKELQAE----LEELEEEL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 664 INDRSHLEEMARLYKVKVEEIEQwIKSELKKFQSEGLLKGVEQELIQWQQKERERLQAIVQQNSLTVEQLEVRIKNDQDh 743
Cdd:TIGR02168 450 EELQEELERLEEALEELREELEE-AEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSE- 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 744 FFKLADKYKINVE-------------------DIQDWLKKE--------LLRLQSEGLVKAETLKEWQQQERAQISLLvq 796
Cdd:TIGR02168 528 LISVDEGYEAAIEaalggrlqavvvenlnaakKAIAFLKQNelgrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAK-- 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 797 qNKYSLDEFERKMLADRarlqeLSNTYNV-----------KVSEIEQWIKSEGDRLQHEGQLRMESQLNNWQKIERQRLL 865
Cdd:TIGR02168 606 -DLVKFDPKLRKALSYL-----LGGVLVVddldnalelakKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREI 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 866 DlinKNNLSIEEIESKISKDQTHLYSLAQQHQVRVEEIEQWIRQQIQKLQDQGLIEMQKLKNWQLEwrGNLTNMVQDRDF 945
Cdd:TIGR02168 680 E---ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV--EQLEERIAQLSK 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 946 TVEEFHKW---LLKDREQLQSLAMQHNVQIEEIEQFVKKEEQRfigmgLLKPSEKLTNWQEVERLHLKNLAQQQYKsTEQ 1022
Cdd:TIGR02168 755 ELTELEAEieeLEERLEEAEEELAEAEAEIEELEAQIEQLKEE-----LKALREALDELRAELTLLNEEAANLRER-LES 828
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1023 LEARLRQDRELLERLARQYSVQVEEIESwMKQELARMRDEGQLQIDNLTSWQ----------LAERERLEALIKQNKQWS 1092
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSEDIES-LAAEIEELEELIEELESELEALLnerasleealALLRSELEELSEELRELE 907
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 665404577 1093 AEelRAELEKDREHMQTMAFQYHTSVEEIEKWLQSEIERLKQQGKLNIE 1141
Cdd:TIGR02168 908 SK--RSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLE 954
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1078-1666 |
7.00e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.39 E-value: 7.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1078 RERLEALIKQNKQwsAE---ELRAELEKdREHmQTMAFQYHTSVEEIEKwLQSEIERLKQQgklnIEQLTAWQRTEQQRI 1154
Cdd:COG1196 199 ERQLEPLERQAEK--AEryrELKEELKE-LEA-ELLLLKLRELEAELEE-LEAELEELEAE----LEELEAELAELEAEL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1155 LSLLQQHSNITLEqfqakvHNDRRFLMNLAEQHHVHIEEVDNYVKQVIEDLRKNGQFEIEQLQTWQRVErdyikslisey 1234
Cdd:COG1196 270 EELRLELEELELE------LEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL----------- 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1235 knslstAEYEEKLLADRAHLKHLADQYRINVEQIEEwMIAELKRLRGSTEETLKSLSAWQVSELERLQNLVKQQNHLTfv 1314
Cdd:COG1196 333 ------EELEEELEELEEELEEAEEELEEAEAELAE-AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE-- 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1315 EFEMELNQERDRLQKLANQYSVNVVEIEEwLRQQLINLRTTGQAKVENLSKWQVEEQQRLIEMLLKKQQEmpyEQVEREL 1394
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAE-LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA---ALLEAAL 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1395 TQDHARLQSLSQTHHVDIDHVDH-------WLREELRRLQSSGLVQIEQQTQWQQKISNGFNNWLE---QQRNGASYQDF 1464
Cdd:COG1196 480 AELLEELAEAAARLLLLLEAEADyegflegVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAaalQNIVVEDDEVA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1465 VDFLKRDKQRMDGIATDYHVTVEQVEKWVQKEAARLSLIGVI-----ERPENNLKYEDISNIWVGDQTDSWKNE------ 1533
Cdd:COG1196 560 AAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVdlvasDLREADARYYVLGDTLLGRTLVAARLEaalrra 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1534 --LVTRLRSVTRQRPFTRQEFESYLIRNKPIFEQIARQyhvTIEDIHLWLDQSAKNEGLVTTEWQAKERLHIDNLINQQL 1611
Cdd:COG1196 640 vtLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEA---EAELEELAERLAEEELELEEALLAEEEEERELAEAEEER 716
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 665404577 1612 RKQQRWTIEELELRLNNDQKHLQDAVAQYHVTVEELKVWYKDELNRLLEQRRIDR 1666
Cdd:COG1196 717 LEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1032-1317 |
1.54e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 46.84 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1032 ELLERLARQYSVQVE----EIESWMKQELARMRDEGQLQIDNLTSWQLAERERLEALIKQNKQwSAEELRAELEKDREHM 1107
Cdd:PRK05771 20 EVLEALHELGVVHIEdlkeELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVK-SLEELIKDVEEELEKI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1108 QTMAFQYHTSVEEIE---KWLQSEIERLKQQGKLNIEqltawqrteqqriLSLLQQHSNITLEQFQAKVHNDRRFLMNLA 1184
Cdd:PRK05771 99 EKEIKELEEEISELEneiKELEQEIERLEPWGNFDLD-------------LSLLLGFKYVSVFVGTVPEDKLEELKLESD 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1185 EQHHVHIEEVDNYV-----------KQVIEDLRKNGqFEIEQLQtwqrvERDYIKSLISEYKNSLSTAEYEEKLLadRAH 1253
Cdd:PRK05771 166 VENVEYISTDKGYVyvvvvvlkelsDEVEEELKKLG-FERLELE-----EEGTPSELIREIKEELEEIEKERESL--LEE 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1254 LKHLADQYRINVEQIEEWMIAELKR----LRGSTEETLKSLSAW-QVSELERLQNLVKQQ-NHLTFVEFE 1317
Cdd:PRK05771 238 LKELAKKYLEELLALYEYLEIELERaealSKFLKTDKTFAIEGWvPEDRVKKLKELIDKAtGGSAYVEFV 307
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
416-1194 |
2.15e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 69.76 E-value: 2.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 416 VQDIERWQNEnARKLAEAA----RQHGIS-QNQLQQFQ--REELQRLYVHFNQVNESLAPQVPSvpqTTYNYQSSSSLTE 488
Cdd:pfam15921 87 VKDLQRRLNE-SNELHEKQkfylRQSVIDlQTKLQEMQmeRDAMADIRRRESQSQEDLRNQLQN---TVHELEAAKCLKE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 489 D-----NTKEQQrLEELIRQHNATIAALQnSIKTDQQRLKNLSIKYQGDMQsqTQWLRGEVARIGDLIKEQNEQVS---- 559
Cdd:pfam15921 163 DmledsNTQIEQ-LRKMMLSHEGVLQEIR-SILVDFEEASGKKIYEHDSMS--TMHFRSLGSAISKILRELDTEISylkg 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 560 -------KITAWQSSERSRLENILLQHRGSVEEvqqrinmdrnylqnLATKYQVSVEELEkwQKEELERLQVRG-QQQLE 631
Cdd:pfam15921 239 rifpvedQLEALKSESQNKIELLLQQHQDRIEQ--------------LISEHEVEITGLT--EKASSARSQANSiQSQLE 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 632 ehikdwqiSVSSNLRDIATQNKLTIDEFQNYIINDRSHLEEMARLYKVKVEEIEQWI---KSELKKFQSE--------GL 700
Cdd:pfam15921 303 --------IIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLvlaNSELTEARTErdqfsqesGN 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 701 LKGVEQELIQWQQKERERLQAIVQQ----------NSLTVEQLEVRIKNDQDHFFKLADKYKINVEDIQDWLKKELLRLQ 770
Cdd:pfam15921 375 LDDQLQKLLADLHKREKELSLEKEQnkrlwdrdtgNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQ 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 771 --SEGLVKAETLKEWQQQERAQISLLVQQ-----------------NKYSLDEFERKMLADRARLQELSNTYNVKVSEIe 831
Cdd:pfam15921 455 gkNESLEKVSSLTAQLESTKEMLRKVVEEltakkmtlessertvsdLTASLQEKERAIEATNAEITKLRSRVDLKLQEL- 533
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 832 QWIKSEGDRLQHegqLRMESQLNNWQKIERQRLLDLINknnlsiEEIESkiskdqthLYSLAQQHQvrveeieqwirqqi 911
Cdd:pfam15921 534 QHLKNEGDHLRN---VQTECEALKLQMAEKDKVIEILR------QQIEN--------MTQLVGQHG-------------- 582
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 912 qklQDQGLIEMQKlknwqlewrGNLTNMVQDRDFTVEEFHkwLLKDREQLQSLAMQHNVQIEEIEQFvkkeeqRFIGMGl 991
Cdd:pfam15921 583 ---RTAGAMQVEK---------AQLEKEINDRRLELQEFK--ILKDKKDAKIRELEARVSDLELEKV------KLVNAG- 641
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 992 lkpSEKLTNWQEV--ERLHLKNlaqqQYKSTEQLEARLRQDRELLERLARQYSVQVEEIESWMKQELARMRDEGQLQIDN 1069
Cdd:pfam15921 642 ---SERLRAVKDIkqERDQLLN----EVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNT 714
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1070 LTSWQLAERERLEALIKQNKQWSAEE-----LRAELEKDREHMQTMAFQYHTSVEEIEKWLQS----EIERLKQQGKLni 1140
Cdd:pfam15921 715 LKSMEGSDGHAMKVAMGMQKQITAKRgqidaLQSKIQFLEEAMTNANKEKHFLKEEKNKLSQElstvATEKNKMAGEL-- 792
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*.
gi 665404577 1141 EQLTAWQRTEQQRI--LSLLQQHSNITLEQFQAKVHNDRRFLMNLAEQHHVHIEEV 1194
Cdd:pfam15921 793 EVLRSQERRLKEKVanMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKEL 848
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
545-1161 |
1.06e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 545 ARIGDLIKEQNEQVSKI----------TAWQSSERSRLENILLQHRGSVEEVQQRINMDRNYLQNLATKYQVSVEELEKw 614
Cdd:COG1196 189 ERLEDILGELERQLEPLerqaekaeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEA- 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 615 QKEELERLQVRGQQQLEEHIKDWQI---SVSSNLRDIATQNKLTIDEFQNYIINDRSHLEEMARLYKVKVEEIEQwiksE 691
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYEllaELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL----E 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 692 LKKFQSEGLLKGVEQELIQwQQKERERLQAIVQQNSLTVEQLEVRIKNDQDHFFKLADKYKINVEDIQDwLKKELLRLQS 771
Cdd:COG1196 344 EELEEAEEELEEAEAELAE-AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA-LLERLERLEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 772 EGLVKAETLKEwQQQERAQISLLVQQNKYSLDEFERKMLADRARLQELSNTYNVKVSEIEQWIKSEGDRLQHEgQLRMES 851
Cdd:COG1196 422 ELEELEEALAE-LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL-LLLLEA 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 852 QLNNWQKIERQRLLDLINKNNLSIEEIESKISKDQTHLY----SLAQQHQVRVEEIEQWIRQQIQKLQDQGLIEMQKLKN 927
Cdd:COG1196 500 EADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAaleaALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPL 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 928 WQLEwRGNLTNMVQDRDFTVEEFHKWLLKDREQLQSLAMQHNVQIEEIEQFVKKEEQRFIGMGLLKPSEKLTNWQEVERL 1007
Cdd:COG1196 580 DKIR-ARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSA 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1008 HLKNLAQQQYKSTEQLEARLRQDRELLERLARQYSVQVEEIESWMKQELARMRDEGQLQIDNLTSWQLAERERLEALIKQ 1087
Cdd:COG1196 659 GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELL 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1088 NKQWSAEELRAELEKDREHmqtmafqyhtsVEEIEKWLQSEIERLKQQ----GKLN---IEQLTAwqrtEQQRILSLLQQ 1160
Cdd:COG1196 739 EELLEEEELLEEEALEELP-----------EPPDLEELERELERLEREiealGPVNllaIEEYEE----LEERYDFLSEQ 803
|
.
gi 665404577 1161 H 1161
Cdd:COG1196 804 R 804
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
424-1141 |
1.43e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 1.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 424 NENARKLAEAARQHGISQNQLQQFQrEELQRLYVHFNQVNESLAPQvpsvpQTTYNyqsssslteDNTKEQQRLEELIRQ 503
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELE-EKLEELRLEVSELEEEIEEL-----QKELY---------ALANEISRLEQQKQI 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 504 HNATIAALQNSIKTDQQRLKNLsikyqgdmQSQTQWLRGEVARIGDLIKEQNEQVSKITAWQSSERSRLENiLLQHRGSV 583
Cdd:TIGR02168 307 LRERLANLERQLEELEAQLEEL--------ESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE-LESRLEEL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 584 EEVQQRINMDRNYLQNLATKYQVSVEELEKwQKEELERLQVRGQQQLEEHIKDWQisvSSNLRDIATQnkltIDEFQNYI 663
Cdd:TIGR02168 378 EEQLETLRSKVAQLELQIASLNNEIERLEA-RLERLEDRRERLQQEIEELLKKLE---EAELKELQAE----LEELEEEL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 664 INDRSHLEEMARLYKVKVEEIEQwIKSELKKFQSEGLLKGVEQELIQWQQKERERLQAIVQQNSLTVEQLEVRIKNDQDh 743
Cdd:TIGR02168 450 EELQEELERLEEALEELREELEE-AEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSE- 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 744 FFKLADKYKINVE-------------------DIQDWLKKE--------LLRLQSEGLVKAETLKEWQQQERAQISLLvq 796
Cdd:TIGR02168 528 LISVDEGYEAAIEaalggrlqavvvenlnaakKAIAFLKQNelgrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAK-- 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 797 qNKYSLDEFERKMLADRarlqeLSNTYNV-----------KVSEIEQWIKSEGDRLQHEGQLRMESQLNNWQKIERQRLL 865
Cdd:TIGR02168 606 -DLVKFDPKLRKALSYL-----LGGVLVVddldnalelakKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREI 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 866 DlinKNNLSIEEIESKISKDQTHLYSLAQQHQVRVEEIEQWIRQQIQKLQDQGLIEMQKLKNWQLEwrGNLTNMVQDRDF 945
Cdd:TIGR02168 680 E---ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV--EQLEERIAQLSK 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 946 TVEEFHKW---LLKDREQLQSLAMQHNVQIEEIEQFVKKEEQRfigmgLLKPSEKLTNWQEVERLHLKNLAQQQYKsTEQ 1022
Cdd:TIGR02168 755 ELTELEAEieeLEERLEEAEEELAEAEAEIEELEAQIEQLKEE-----LKALREALDELRAELTLLNEEAANLRER-LES 828
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1023 LEARLRQDRELLERLARQYSVQVEEIESwMKQELARMRDEGQLQIDNLTSWQ----------LAERERLEALIKQNKQWS 1092
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSEDIES-LAAEIEELEELIEELESELEALLnerasleealALLRSELEELSEELRELE 907
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 665404577 1093 AEelRAELEKDREHMQTMAFQYHTSVEEIEKWLQSEIERLKQQGKLNIE 1141
Cdd:TIGR02168 908 SK--RSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLE 954
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
545-1408 |
3.56e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 55.75 E-value: 3.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 545 ARIGDLIKEQNEQVsKITAWQSSERSRLENILLQHRgsvEEVQQRINMDRNYLQNlatkyqvsvEELEKWQKEELERLQv 624
Cdd:pfam02463 186 AELIIDLEELKLQE-LKLKEQAKKALEYYQLKEKLE---LEEEYLLYLDYLKLNE---------ERIDLLQELLRDEQE- 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 625 rgqqqleehikdwqisvssnlrDIATQNKLTIDEFQNYIINDRSHLEEMArlyKVKVEEIEQWIKSELKKFQSEGLLKGV 704
Cdd:pfam02463 252 ----------------------EIESSKQEIEKEEEKLAQVLKENKEEEK---EKKLQEEELKLLAKEEEELKSELLKLE 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 705 EQELIQWQQKERErlQAIVQQNSLTVEQLEVRIKNDQDHFFKLADKYKINVEDIQDWLKKELLRLQSEGLVKAETLKEWQ 784
Cdd:pfam02463 307 RRKVDDEEKLKES--EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESE 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 785 QQERAQISLLVQQNKYSLDEFERKMLADRARLQELSNTynvkvsEIEQWIKSEGDRLQHEGQLRMESQLNNWQKIERQRL 864
Cdd:pfam02463 385 RLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLK------EEKKEELEILEEEEESIELKQGKLTEEKEELEKQEL 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 865 LDLinKNNLSIEEIESKISKDQthlysLAQQHQVRVEEIEQWIRQQIQKLQDQGLIEMQKLKNWQLEWRGNLTNMVQDRD 944
Cdd:pfam02463 459 KLL--KDELELKKSEDLLKETQ-----LVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRL 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 945 FTVEEF-HKWLLKDREQLQSLAMQHNVQIEEIEQFVKKEEQRFIGMGLLKPSEKLTNWQEVERLHLKNLAQQQYKSTEQ- 1022
Cdd:pfam02463 532 GDLGVAvENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKa 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1023 -LEARLRQDRELLERLARQYSVQVEEIESWMKQELARMRDEGQLQIDNLTSWQLAERERLEALIKQNKQWSA-EELRAEL 1100
Cdd:pfam02463 612 tLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEkAESELAK 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1101 EKDREHMQTMAFQYHTSVEEIEKWLQSEIERLKQQGKLNIEQLTAWQRTEQQRILSLLQQHSNITLEQFQAKVHNDRRFL 1180
Cdd:pfam02463 692 EEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSL 771
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1181 MNLAEQHHVHIEEVDNYVKQVIEDLRKnGQFEIEQLQTWQRVERDYIKSLISEYKNSLSTAEYEEKLLADRAHLKHLADQ 1260
Cdd:pfam02463 772 KEKELAEEREKTEKLKVEEEKEEKLKA-QEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEK 850
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1261 YRINVEQIEEWMIAELKRLRGSTEETLKSLSAWQVSELERLQNLVKQQNHLTFVEfEMELNQERDRLQKLANQYSVNVVE 1340
Cdd:pfam02463 851 LAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEE-SQKLNLLEEKENEIEERIKEEAEI 929
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 665404577 1341 IEEWLRQQLInLRTTGQAKVENLSKWQVEEQQRLIEMLLKKQQEMP--------YEQVERELTQDHARLQSLSQTH 1408
Cdd:pfam02463 930 LLKYEEEPEE-LLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKvnlmaieeFEEKEERYNKDELEKERLEEEK 1004
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
540-880 |
4.63e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 4.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 540 LRGEVARIGDLI-KEQNEQVSKITAwQSSERSRLENILLQHRGSVEEVQQRINMDRNYLQNLATKyqvsVEELEKwQKEE 618
Cdd:TIGR02168 650 LDGDLVRPGGVItGGSAKTNSSILE-RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEE----LEQLRK-ELEE 723
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 619 LERLQVRGQQQLEEHIKDWQisvssNLRDIATQNKLTIDEFQNYIINDRSHLEEMARLYKVKVEEIEQwIKSELKKFQSE 698
Cdd:TIGR02168 724 LSRQISALRKDLARLEAEVE-----QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE-LEAQIEQLKEE 797
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 699 gllKGVEQELIQWQQKERERLQAIVQQNSLTVEQLEVRIKNDQDHFFKLADKYKINVEDIQDwLKKELLRLQ------SE 772
Cdd:TIGR02168 798 ---LKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES-LAAEIEELEelieelES 873
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 773 GLVKAETLKEWQQQERAQISLLVQQNKYSLDEFERKMLADRARLQELS---NTYNVKVSEIEQWIKSEGDRLQHEGQLRM 849
Cdd:TIGR02168 874 ELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELReklAQLELRLEGLEVRIDNLQERLSEEYSLTL 953
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 665404577 850 ESQLNNWQKIE------RQRLLDLINK-------NNLSIEEIES 880
Cdd:TIGR02168 954 EEAEALENKIEddeeeaRRRLKRLENKikelgpvNLAAIEEYEE 997
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
488-1157 |
6.11e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 6.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 488 EDNTKEQQRLEELIRQHNATIAALQNSIKTDQQRLKNLSIKyQGDMQSQTQWLRGEVARIGDLIKEQNEQvskITAWQSS 567
Cdd:TIGR02168 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE-ISRLEQQKQILRERLANLERQLEELEAQ---LEELESK 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 568 ------ERSRLENILLQHRGSVEEVQQRINMDRNYLQNLATKYQVSVEELEKWQKE-------------ELERLQVRgQQ 628
Cdd:TIGR02168 332 ldelaeELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKvaqlelqiaslnnEIERLEAR-LE 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 629 QLEEHIKDWQISVSSNLRDIATQNK----LTIDEFQNYIINDRSHLEEMARLYKVKVEEIEQwIKSELKKFQSEGLLKGV 704
Cdd:TIGR02168 411 RLEDRRERLQQEIEELLKKLEEAELkelqAELEELEEELEELQEELERLEEALEELREELEE-AEQALDAAERELAQLQA 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 705 EQELIQWQQKERERLQAIVQQNSLTVEQLEVRIKNDQDhFFKLADKYKINVE-------------------DIQDWLKKE 765
Cdd:TIGR02168 490 RLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSE-LISVDEGYEAAIEaalggrlqavvvenlnaakKAIAFLKQN 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 766 --------LLRLQSEGLVKAETLKEWQQQERAQISLLvqqNKYSLDEFERKMLADRarlqeLSNTYNV-----------K 826
Cdd:TIGR02168 569 elgrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAK---DLVKFDPKLRKALSYL-----LGGVLVVddldnalelakK 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 827 VSEIEQWIKSEGDRLQHEGQLRMESQLNNWQKIERQRLLDlinKNNLSIEEIESKISKDQTHLYSLAQQHQVRVEEIEQW 906
Cdd:TIGR02168 641 LRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIE---ELEEKIEELEEKIAELEKALAELRKELEELEEELEQL 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 907 IRQQIQKLQDQGLIEMQKLKNWQLEwrGNLTNMVQDRDFTVEEFHKW---LLKDREQLQSLAMQHNVQIEEIEQFVKKEE 983
Cdd:TIGR02168 718 RKELEELSRQISALRKDLARLEAEV--EQLEERIAQLSKELTELEAEieeLEERLEEAEEELAEAEAEIEELEAQIEQLK 795
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 984 QRfigmgLLKPSEKLTNWQEVERLHLKNLAQQQYKsTEQLEARLRQDRELLERLARQYSVQVEEIESwMKQELARMRDEG 1063
Cdd:TIGR02168 796 EE-----LKALREALDELRAELTLLNEEAANLRER-LESLERRIAATERRLEDLEEQIEELSEDIES-LAAEIEELEELI 868
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1064 QLQIDNLTSWqLAERERLEALIKQNKQwSAEELRAELEKDREHMQTMAFQYHTSVEEIEKwLQSEIERLKQQGKLNIEQL 1143
Cdd:TIGR02168 869 EELESELEAL-LNERASLEEALALLRS-ELEELSEELRELESKRSELRRELEELREKLAQ-LELRLEGLEVRIDNLQERL 945
|
730
....*....|....
gi 665404577 1144 TAWQRTEQQRILSL 1157
Cdd:TIGR02168 946 SEEYSLTLEEAEAL 959
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
762-1329 |
1.02e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 762 LKKELLRLQSEGLVKAetlKEWQQQERAQISLLVQQNKYSLDEFERKMLADRARLQELSNTYNVKVSEIEQwiKSEGDRL 841
Cdd:COG1196 218 LKEELKELEAELLLLK---LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEE--AQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 842 QHEGQLRMESQLNNwQKIERQRLLDLINKNNLSIEEIESKISKDQTHLYSLAQQHQV---RVEEIEQWIRQQIQKLQDQG 918
Cdd:COG1196 293 LLAELARLEQDIAR-LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEaeeELEEAEAELAEAEEALLEAE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 919 LIEMQKLKNWQLEWRGNLTNMVQDRDFTVEEFHkwLLKDREQLQSLAMQHNVQIEEIEQFVKKEEQRfigmgllkpsEKL 998
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAAQLEE--LEEAEEALLERLERLEEELEELEEALAELEEE----------EEE 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 999 TNWQEVERLHLKNLAQQQYKSTEQLEARLRQDRELLERLARQYSVQVEEIES--WMKQELARmRDEGQLQiDNLTSWQLA 1076
Cdd:COG1196 440 EEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAArlLLLLEAEA-DYEGFLE-GVKAALLLA 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1077 ERERLEALIKQNKQWSAEELRAELEKDREHMQtmafqyhTSVEEIEKWLQSEIERLKQQ--GKLNIEQLTA-WQRTEQQR 1153
Cdd:COG1196 518 GLRGLAGAVAVLIGVEAAYEAALEAALAAALQ-------NIVVEDDEVAAAAIEYLKAAkaGRATFLPLDKiRARAALAA 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1154 ILSLLQQHSNITLEQFQAKVHNDRRFLMN---LAEQHHVHIEEVDNYVKQVIEDLRKNGQFEIEQLQTWQRVERDYIKSL 1230
Cdd:COG1196 591 ALARGAIGAAVDLVASDLREADARYYVLGdtlLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRREL 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1231 ISEyknsLSTAEYEEKLLADR--AHLKHLADQYRINVEQIEEWMIAELKRLRGSTEETLKSLSAWQVSELERLQNLVKQQ 1308
Cdd:COG1196 671 LAA----LLEAEAELEELAERlaEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEE 746
|
570 580
....*....|....*....|.
gi 665404577 1309 NHLTFVEFEMELNQERDRLQK 1329
Cdd:COG1196 747 LLEEEALEELPEPPDLEELER 767
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
755-1108 |
4.95e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 4.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 755 VEDIQDWLKKEL--LRLQSEglvKAETLKEWQQQER-AQISLLVQQnkysLDEFERKmladrarLQELSNTYNVKVSEIE 831
Cdd:TIGR02168 191 LEDILNELERQLksLERQAE---KAERYKELKAELReLELALLVLR----LEELREE-------LEELQEELKEAEEELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 832 qwiksegdrlqhegqlRMESQLNNWQKierqrlldLINKNNLSIEEIESKISKDQTHLYSLAQqhqvRVEEIEQWIRQQI 911
Cdd:TIGR02168 257 ----------------ELTAELQELEE--------KLEELRLEVSELEEEIEELQKELYALAN----EISRLEQQKQILR 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 912 QKLQDqgliemqkLKNWQLEWRGNLTNMVQDRDFTVEEFHKWllkdREQLQSLAMQHNVQIEEIEQFVKKEEQrfigmgl 991
Cdd:TIGR02168 309 ERLAN--------LERQLEELEAQLEELESKLDELAEELAEL----EEKLEELKEELESLEAELEELEAELEE------- 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 992 lkpSEKLTNWQEVERLHLKNLAQQQYKSTEQLEARLRQDRELLERLARQYSVQVEEIESWMKQELARMRDEGQLQIDNLT 1071
Cdd:TIGR02168 370 ---LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446
|
330 340 350
....*....|....*....|....*....|....*..
gi 665404577 1072 SWQLAERERLEALIKQnkqwsAEELRAELEKDREHMQ 1108
Cdd:TIGR02168 447 EELEELQEELERLEEA-----LEELREELEEAEQALD 478
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
893-1427 |
3.03e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 3.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 893 AQQHQVRVEEIEQWIRQQIQKLQDQ--------GL-IEMQKLKN--WQLEWRG------NLTNMVQDRDFTVEEFHKWLL 955
Cdd:COG1196 184 TEENLERLEDILGELERQLEPLERQaekaeryrELkEELKELEAelLLLKLREleaeleELEAELEELEAELEELEAELA 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 956 KDREQLQSLAMQHNVQIEEIEQfvKKEEQRFIGMGLLKPSEKLTNWQEvERLHLKNLAQQQYKSTEQLEARLRQDRELLE 1035
Cdd:COG1196 264 ELEAELEELRLELEELELELEE--AQAEEYELLAELARLEQDIARLEE-RRRELEERLEELEEELAELEEELEELEEELE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1036 RLARQYSVQVEEIESW---MKQELARMRDEGQLQIDNLTSWQLAERERLEALIKQNKQwsAEELRAELEKDREHMQTMAF 1112
Cdd:COG1196 341 ELEEELEEAEEELEEAeaeLAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL--AAQLEELEEAEEALLERLER 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1113 QYHTSVEEIEKWLQSEIERLKQQGKLNIEQLTAWQRTEQQRILSLLQQHSNITLEQFQAKVHNDRRFLMNLAEQHHVHIE 1192
Cdd:COG1196 419 LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1193 EVDN---YVKQVIEDLRKNGQFEIEQ-LQTWQRVERDYiksliseyknslstAEYEEKLLADRAHLKHLADqyrinvEQI 1268
Cdd:COG1196 499 AEADyegFLEGVKAALLLAGLRGLAGaVAVLIGVEAAY--------------EAALEAALAAALQNIVVED------DEV 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1269 EEWMIAELKRLRGSTEETlksLSAWQVSELERLQNLVKQQNHLTFVEFEMELNQERDRLQKLANQYSVNVVEIEEWLRQQ 1348
Cdd:COG1196 559 AAAAIEYLKAAKAGRATF---LPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAA 635
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 665404577 1349 LINLRTTGQAKVENLSKWQVEEQQRLIEMLLKKQQEMPYEQVERELTQDHARLQSLSQTHHVDIDHVDHWLREELRRLQ 1427
Cdd:COG1196 636 LRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1078-1666 |
7.00e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.39 E-value: 7.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1078 RERLEALIKQNKQwsAE---ELRAELEKdREHmQTMAFQYHTSVEEIEKwLQSEIERLKQQgklnIEQLTAWQRTEQQRI 1154
Cdd:COG1196 199 ERQLEPLERQAEK--AEryrELKEELKE-LEA-ELLLLKLRELEAELEE-LEAELEELEAE----LEELEAELAELEAEL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1155 LSLLQQHSNITLEqfqakvHNDRRFLMNLAEQHHVHIEEVDNYVKQVIEDLRKNGQFEIEQLQTWQRVErdyikslisey 1234
Cdd:COG1196 270 EELRLELEELELE------LEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL----------- 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1235 knslstAEYEEKLLADRAHLKHLADQYRINVEQIEEwMIAELKRLRGSTEETLKSLSAWQVSELERLQNLVKQQNHLTfv 1314
Cdd:COG1196 333 ------EELEEELEELEEELEEAEEELEEAEAELAE-AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE-- 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1315 EFEMELNQERDRLQKLANQYSVNVVEIEEwLRQQLINLRTTGQAKVENLSKWQVEEQQRLIEMLLKKQQEmpyEQVEREL 1394
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAE-LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA---ALLEAAL 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1395 TQDHARLQSLSQTHHVDIDHVDH-------WLREELRRLQSSGLVQIEQQTQWQQKISNGFNNWLE---QQRNGASYQDF 1464
Cdd:COG1196 480 AELLEELAEAAARLLLLLEAEADyegflegVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAaalQNIVVEDDEVA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1465 VDFLKRDKQRMDGIATDYHVTVEQVEKWVQKEAARLSLIGVI-----ERPENNLKYEDISNIWVGDQTDSWKNE------ 1533
Cdd:COG1196 560 AAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVdlvasDLREADARYYVLGDTLLGRTLVAARLEaalrra 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1534 --LVTRLRSVTRQRPFTRQEFESYLIRNKPIFEQIARQyhvTIEDIHLWLDQSAKNEGLVTTEWQAKERLHIDNLINQQL 1611
Cdd:COG1196 640 vtLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEA---EAELEELAERLAEEELELEEALLAEEEEERELAEAEEER 716
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 665404577 1612 RKQQRWTIEELELRLNNDQKHLQDAVAQYHVTVEELKVWYKDELNRLLEQRRIDR 1666
Cdd:COG1196 717 LEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1032-1317 |
1.54e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 46.84 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1032 ELLERLARQYSVQVE----EIESWMKQELARMRDEGQLQIDNLTSWQLAERERLEALIKQNKQwSAEELRAELEKDREHM 1107
Cdd:PRK05771 20 EVLEALHELGVVHIEdlkeELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVK-SLEELIKDVEEELEKI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1108 QTMAFQYHTSVEEIE---KWLQSEIERLKQQGKLNIEqltawqrteqqriLSLLQQHSNITLEQFQAKVHNDRRFLMNLA 1184
Cdd:PRK05771 99 EKEIKELEEEISELEneiKELEQEIERLEPWGNFDLD-------------LSLLLGFKYVSVFVGTVPEDKLEELKLESD 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1185 EQHHVHIEEVDNYV-----------KQVIEDLRKNGqFEIEQLQtwqrvERDYIKSLISEYKNSLSTAEYEEKLLadRAH 1253
Cdd:PRK05771 166 VENVEYISTDKGYVyvvvvvlkelsDEVEEELKKLG-FERLELE-----EEGTPSELIREIKEELEEIEKERESL--LEE 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1254 LKHLADQYRINVEQIEEWMIAELKR----LRGSTEETLKSLSAW-QVSELERLQNLVKQQ-NHLTFVEFE 1317
Cdd:PRK05771 238 LKELAKKYLEELLALYEYLEIELERaealSKFLKTDKTFAIEGWvPEDRVKKLKELIDKAtGGSAYVEFV 307
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1017-1301 |
2.11e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 2.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1017 YKSTEQLEARLRQDRELLERLARQYSVQVEEIESWMKQELARMRD------EGQLQIDNLTSWQLAERERLEAL-----I 1085
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDasrkigEIEKEIEQLEQEEEKLKERLEELeedlsS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1086 KQNKQWSAEELRAELEKDREHMQTMAFQYHTSVEEIEKwlqseieRLKQQGKLNIEQLTAWQRTEQQRILSLLQQhsnit 1165
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEA-------RLSHSRIPEIQAELSKLEEEVSRIEARLRE----- 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1166 LEQFQAKVHNDRRFLmnlaEQHHVHIEEVDNYVKQVIEDLRKngqfEIEQLQTwqRVERdyIKSLISEYKNSLSTAEYE- 1244
Cdd:TIGR02169 817 IEQKLNRLTLEKEYL----EKEIQELQEQRIDLKEQIKSIEK----EIENLNG--KKEE--LEEELEELEAALRDLESRl 884
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 665404577 1245 EKLLADRAHLKHLADQYRINVEQIEEwmIAELKRLRGSTEETLKSLSAWQVSELERL 1301
Cdd:TIGR02169 885 GDLKKERDELEAQLRELERKIEELEA--QIEKKRKRLSELKAKLEALEEELSEIEDP 939
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
488-728 |
2.62e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 2.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 488 EDNTKEQQRLEELIRQHNATIAALQNSIKTDQQRLKNLS---IKYQGDMQSQTQWLRGEVARIGDLIKEQNEQVSKITAw 564
Cdd:COG1196 256 EELEAELAELEAELEELRLELEELELELEEAQAEEYELLaelARLEQDIARLEERRRELEERLEELEEELAELEEELEE- 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 565 QSSERSRLENILLQHRGSVEEVQQRINMDRNYLQNLATKYQVSVEELEKWQKEELERLQVRGQQQLEEHIKDWQISVSSN 644
Cdd:COG1196 335 LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 645 LRDIATQNKLTIDEfqnyiiNDRSHLEEMARLYKVKVEEIEQWIKSELKKFQSEGLLKGVEQELIQWQQKERERLQAIVQ 724
Cdd:COG1196 415 RLERLEEELEELEE------ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
....
gi 665404577 725 QNSL 728
Cdd:COG1196 489 AAAR 492
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1021-1334 |
5.75e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 5.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1021 EQLEARLRQDRELLERLARQYSVQVEEIESwMKQELARMRDEgqlqIDNLTSWQLAERERLEALIKQNKQWSAEELRAEL 1100
Cdd:TIGR02169 726 EQLEQEEEKLKERLEELEEDLSSLEQEIEN-VKSELKELEAR----IEELEEDLHKLEEALNDLEARLSHSRIPEIQAEL 800
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1101 EK-DREHMQTMAFQYHTSVEEIEKWLQSEIERLKQQGKLNIEQLTAWQRTEQQRILSLLqqhsNITLEQFQAKVHNDRRF 1179
Cdd:TIGR02169 801 SKlEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL----NGKKEELEEELEELEAA 876
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1180 LMNLAEQHHVHIEEVDNYVKQViedlrKNGQFEIEQLQTwqrvERDYIKSLISEYKNSLSTAEYEeklladrahLKHLAD 1259
Cdd:TIGR02169 877 LRDLESRLGDLKKERDELEAQL-----RELERKIEELEA----QIEKKRKRLSELKAKLEALEEE---------LSEIED 938
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 665404577 1260 QYRINVEQIEEWMIAE-LKRLRGSTEETLKSLSAWQVSELERLQNLVKQQNHLtfVEFEMELNQERDRLQKLANQY 1334
Cdd:TIGR02169 939 PKGEDEEIPEEELSLEdVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDEL--KEKRAKLEEERKAILERIEEY 1012
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
576-862 |
6.72e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.73 E-value: 6.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 576 LLQHRGSVEEVQQRinmdrnylqnlaTKYQVSVEELEKWQKEELERlQVRGQQQLEEHIKDWQISVSSNLRDIATQNKLT 655
Cdd:pfam17380 277 IVQHQKAVSERQQQ------------EKFEKMEQERLRQEKEEKAR-EVERRRKLEEAEKARQAEMDRQAAIYAEQERMA 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 656 IDEFQNYiinDRSHLEEMAR-LYKVKVEEIEQWIKS--ELKKFQSEGLLKG--VEQEL-------IQWQQKERERLQAIV 723
Cdd:pfam17380 344 MEREREL---ERIRQEERKReLERIRQEEIAMEISRmrELERLQMERQQKNerVRQELeaarkvkILEEERQRKIQQQKV 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 724 QQNSLTVEQLEVRikndQDHFFKLADKY-----KINVEDIQDWLKKELLRLQSEGLVKAETLKEWQQQERAQISllvQQN 798
Cdd:pfam17380 421 EMEQIRAEQEEAR----QREVRRLEEERaremeRVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAE---EQR 493
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 665404577 799 KYSLdefERKMLADRARLQELSNTYNVKVSEIEQ---WIKSEGDRLQHEGQLRMESQLNNWQKIERQ 862
Cdd:pfam17380 494 RKIL---EKELEERKQAMIEEERKRKLLEKEMEErqkAIYEEERRREAEEERRKQQEMEERRRIQEQ 557
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
421-909 |
1.24e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.94 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 421 RWQNENARKLAEaaRQHGISQnQLQQFqREELQRLYVHFNQVNESLAPQVPSVPQTTynyQSSSSLTEDNTKEQQRLEEL 500
Cdd:pfam05483 278 KLQDENLKELIE--KKDHLTK-ELEDI-KMSLQRSMSTQKALEEDLQIATKTICQLT---EEKEAQMEELNKAKAAHSFV 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 501 IRQHNATIAALQNSIKTDQQRLKNlsikYQGDMQSQTQWLRGEVARIGDLIKEQN------EQVSKITAWQSS---ERSR 571
Cdd:pfam05483 351 VTEFEATTCSLEELLRTEQQRLEK----NEDQLKIITMELQKKSSELEEMTKFKNnkevelEELKKILAEDEKlldEKKQ 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 572 LENILLQHRGSVEEVQQRINMDRNYLQNLATKYQVSVEELEKWQKeelerlQVRGQQQLEEHIKDWQISVSSNLRDIATQ 651
Cdd:pfam05483 427 FEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLK------EVEDLKTELEKEKLKNIELTAHCDKLLLE 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 652 NKLTIDEFQNYIINDRSHLEEMARLYKVKVEEIEQWIKSELKKFQSEGLLKGVEQELIQWQQKERERLQAiVQQNSLTVE 731
Cdd:pfam05483 501 NKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDK-SEENARSIE 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 732 QLEVRIKNDQDHFFKLADKYKINVEDIQDWLKKellrLQSEGlvkaETLKEWQQQERAQISLLvqqnKYSLDEFERKMLA 811
Cdd:pfam05483 580 YEVLKKEKQMKILENKCNNLKKQIENKNKNIEE----LHQEN----KALKKKGSAENKQLNAY----EIKVNKLELELAS 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 812 DRARLQELSNTYNVKVS-----------EIEQW--IKSEGDRLQHEGQLR-----------MESQLNNWQKIERQRLLDL 867
Cdd:pfam05483 648 AKQKFEEIIDNYQKEIEdkkiseeklleEVEKAkaIADEAVKLQKEIDKRcqhkiaemvalMEKHKHQYDKIIEERDSEL 727
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 665404577 868 INKNNLSIEE------IESKISKDQTHLYSLAQQHQVRVEEIEQWIRQ 909
Cdd:pfam05483 728 GLYKNKEQEQssakaaLEIELSNIKAELLSLKKQLEIEKEEKEKLKME 775
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
580-1263 |
1.68e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.80 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 580 RGSVEEVQQRINMDRNYLQNLATKYQVSVEELEKWQKEELERLQ--------VRGQQQLEEHIKDWQISVSSNLRDIAT- 650
Cdd:TIGR00618 193 HGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQqtqqshayLTQKREAQEEQLKKQQLLKQLRARIEEl 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 651 QNKLTIDEFQNYIINDRSHLEEMARLYKvKVEEIEQWIKSELKKFQS-EGLLKGVEQELIQWQQKERERLQAIVQQNSLT 729
Cdd:TIGR00618 273 RAQEAVLEETQERINRARKAAPLAAHIK-AVTQIEQQAQRIHTELQSkMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLH 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 730 VEQLEVRIKNDQDHFFK-LADKYKINVEDIQDW-------------LKKELLRLQSEG----------------LVKAET 779
Cdd:TIGR00618 352 SQEIHIRDAHEVATSIReISCQQHTLTQHIHTLqqqkttltqklqsLCKELDILQREQatidtrtsafrdlqgqLAHAKK 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 780 LKEWQQQERAQISLLVQQNKYSLDEFERKMLADRARLQELS------NTYNVKVSEIEQWIKSEGDRLQHEGQLRMESQL 853
Cdd:TIGR00618 432 QQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREqqlqtkEQIHLQETRKKAVVLARLLELQEEPCPLCGSCI 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 854 NNWQKIER-----------QRLLDLINKNNLSIEEIESKISKDQTHLYSLAQQHQvRVEEIEQWIRQQIQKLQDqgliEM 922
Cdd:TIGR00618 512 HPNPARQDidnpgpltrrmQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQ-EIQQSFSILTQCDNRSKE----DI 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 923 QKLKNWQLEWRGNLTNMVQDRDFTVEEFHKWLLKDREQlqslamQHNVQIEEIEQFVKKEEQRFIgmgLLKPSEKLTNWQ 1002
Cdd:TIGR00618 587 PNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPE------QDLQDVRLHLQQCSQELALKL---TALHALQLTLTQ 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1003 EVERLHLKNLAQQQYKSTEQLEARLRQdrelLERLARQYSVQVEEIESwmKQELARMRDEGQLQIDNLTSWQLAERERLE 1082
Cdd:TIGR00618 658 ERVREHALSIRVLPKELLASRQLALQK----MQSEKEQLTYWKEMLAQ--CQTLLRELETHIEEYDREFNEIENASSSLG 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1083 ALIKQNKQWSAEELRAELEKDREHMQTMAFQYHTSVEE--IEKWLQSEIERLKQQGKLNIEQLTAWQrTEQQRILSLLQQ 1160
Cdd:TIGR00618 732 SDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEvtAALQTGAELSHLAAEIQFFNRLREEDT-HLLKTLEAEIGQ 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1161 HSNITLEQFQAKVH---NDRRFLMNLAEQHHVHIEEVDNYVKQVIEDLRKNGQFEIEQLQTWQRVERDYIKSLISEYKNS 1237
Cdd:TIGR00618 811 EIPSDEDILNLQCEtlvQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQFDG 890
|
730 740
....*....|....*....|....*.
gi 665404577 1238 LSTAEYEEKLLADRAhlKHLADQYRI 1263
Cdd:TIGR00618 891 DALIKFLHEITLYAN--VRLANQSEG 914
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
491-1105 |
3.08e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 3.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 491 TKEQQRLEELIRQHNATIAALQNSIkTDQQRLKNLSIKYQGdmQSQTQWLRGEVARIGDLIKEQNEQVSKITAWQSSERS 570
Cdd:COG4913 247 AREQIELLEPIRELAERYAAARERL-AELEYLRAALRLWFA--QRRLELLEAELEELRAELARLEAELERLEARLDALRE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 571 RLENILLQHRGS----VEEVQQRINM---DRNYLQNLATKYQVSVEELE---KWQKEELERLQVRGQQQLEEhIKDWQIS 640
Cdd:COG4913 324 ELDELEAQIRGNggdrLEQLEREIERlerELEERERRRARLEALLAALGlplPASAEEFAALRAEAAALLEA-LEEELEA 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 641 VSSNLRDIATQNKLTIDEFQNyIINDRSHLEEMARLYKVKVEEIEQWIKSELKKFQSEGLLKGveqELIQWQQKERE--- 717
Cdd:COG4913 403 LEEALAEAEAALRDLRRELRE-LEAEIASLERRKSNIPARLLALRDALAEALGLDEAELPFVG---ELIEVRPEEERwrg 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 718 ---------------------RLQAIVQQNS----LTVEQLEVRIKNDQDHFFK---LADKYKINVEDIQDWLKKELLRl 769
Cdd:COG4913 479 aiervlggfaltllvppehyaAALRWVNRLHlrgrLVYERVRTGLPDPERPRLDpdsLAGKLDFKPHPFRAWLEAELGR- 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 770 qSEGLVKAETLKEWQQQERAqISllvqqnkysldeferkmladRARLqelsntynvkvseieqwIKSEGDRLQHEGQLRM 849
Cdd:COG4913 558 -RFDYVCVDSPEELRRHPRA-IT--------------------RAGQ-----------------VKGNGTRHEKDDRRRI 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 850 ESQL----NNWQKI-----ERQRLLDLINKNNLSIEEIESKISKDQTHLYSLAQQHQVRVEEIEQW-IRQQIQKLQDQgl 919
Cdd:COG4913 599 RSRYvlgfDNRAKLaaleaELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVAsAEREIAELEAE-- 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 920 ieMQKLKNWQLEWRGnltnmVQDRDFTVEEFHKWLLKDREQLQSLAMQHNVQIEEIEQFVKKEEQRFIGMGLLKPSEKLT 999
Cdd:COG4913 677 --LERLDASSDDLAA-----LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA 749
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1000 NW-----QEVERLHLKNLAQQQYKSTEQLEARLRQDRELLERLARQY-----------SVQVEEIESWMKqELARMRDEG 1063
Cdd:COG4913 750 LLeerfaAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFnrewpaetadlDADLESLPEYLA-LLDRLEEDG 828
|
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 665404577 1064 qlqidnltswqLAE-RERLEALIKQNKQWSAEELRAELEKDRE 1105
Cdd:COG4913 829 -----------LPEyEERFKELLNENSIEFVADLLSKLRRAIR 860
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
547-1135 |
3.13e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.74 E-value: 3.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 547 IGDLIKEQNEQVSKItawqSSERSRLENILLQHRGSVEEVQQRINmDRNYLQNLATKYQVSVEELEKWQKEELERLQVRG 626
Cdd:PRK03918 191 IEELIKEKEKELEEV----LREINEISSELPELREELEKLEKEVK-ELEELKEEIEELEKELESLEGSKRKLEEKIRELE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 627 QQ--QLEEHIKDWQISV--SSNLRDIATQnKLTIDEFQNYIINDRSHLEEMARLYKVKVEEIEQWIK------SELKKFq 696
Cdd:PRK03918 266 ERieELKKEIEELEEKVkeLKELKEKAEE-YIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKeleekeERLEEL- 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 697 sEGLLKGVEQELIQWQQKERERLQAIVQQNSLtvEQLEVRIKNDQDHffKLADKYKiNVEDIQDWLKKELLRLQSEglvK 776
Cdd:PRK03918 344 -KKKLKELEKRLEELEERHELYEEAKAKKEEL--ERLKKRLTGLTPE--KLEKELE-ELEKAKEEIEEEISKITAR---I 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 777 AETLKEWQQQERAQISLLVQQNK-----YSLDEFERKmladrarlqELSNTYNVKVSEIEQWIKSEGDRLQH--EGQLRM 849
Cdd:PRK03918 415 GELKKEIKELKKAIEELKKAKGKcpvcgRELTEEHRK---------ELLEEYTAELKRIEKELKEIEEKERKlrKELREL 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 850 ESQLNNWQKIERQR-LLDLInknnlsiEEIESKISKDQTHLYSLAQQHQVRVEEIEQWIRQQIQKLQDQgLIEMQKLKNW 928
Cdd:PRK03918 486 EKVLKKESELIKLKeLAEQL-------KELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKE-LEKLEELKKK 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 929 QLEWRGNLTNMVQDRDFTVEEFHKWLLKDREQLQSlamqhnvQIEEIEQFVKkeeqRFIGmglLKPSEKLTNWQEVERLH 1008
Cdd:PRK03918 558 LAELEKKLDELEEELAELLKELEELGFESVEELEE-------RLKELEPFYN----EYLE---LKDAEKELEREEKELKK 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1009 LKNLAQQQYKSTEQLEARLRQDRELLERLARQYSvqveeieswmKQELARMRDEgQLQIDNLTSWQLAERERLEALIKQN 1088
Cdd:PRK03918 624 LEEELDKAFEELAETEKRLEELRKELEELEKKYS----------EEEYEELREE-YLELSRELAGLRAELEELEKRREEI 692
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 665404577 1089 KQwSAEELRAELEKDREhmqtmafqYHTSVEEIEKWLqSEIERLKQQ 1135
Cdd:PRK03918 693 KK-TLEKLKEELEEREK--------AKKELEKLEKAL-ERVEELREK 729
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
428-1170 |
5.52e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 5.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 428 RKLAEAARQHGISQNQLQQfQREELQrlyvhfnqvneslapqvpsvpqttynyqssssltedntkEQQRLEELIRQHNAT 507
Cdd:TIGR00618 229 KHLREALQQTQQSHAYLTQ-KREAQE---------------------------------------EQLKKQQLLKQLRAR 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 508 IAALQNSIKtdqqRLKNLsikyQGDMQSQTQWLRgeVARIGDLIKEQNEQVSKI-TAWQSSERSRLEniLLQHRGSVEEV 586
Cdd:TIGR00618 269 IEELRAQEA----VLEET----QERINRARKAAP--LAAHIKAVTQIEQQAQRIhTELQSKMRSRAK--LLMKRAAHVKQ 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 587 QQRINMDRNYLQNLatkyQVSVEELEKWQKEELERLQVRGQQ-QLEEHIKDWQisvssnlrdiatqnkltidefqnyiiN 665
Cdd:TIGR00618 337 QSSIEEQRRLLQTL----HSQEIHIRDAHEVATSIREISCQQhTLTQHIHTLQ--------------------------Q 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 666 DRSHLEEMARLYKVKVEEIEQWIKSELKKFQSEGLLKG--VEQELIQWQQKERERLQAIVQQNSLTVEQLEVRikndqdH 743
Cdd:TIGR00618 387 QKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGqlAHAKKQQELQQRYAELCAAAITCTAQCEKLEKI------H 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 744 FFKLADKYKINVEDIQDwLKKELLRLQSEGLVKAETLKEWQQQERAQISLLVQQNKYSLDEFERKmlADRARLQELSNTY 823
Cdd:TIGR00618 461 LQESAQSLKEREQQLQT-KEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPG--PLTRRMQRGEQTY 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 824 NVKVSEIE----QWIKSEGDRLQHEGQLRMESQLNNWQKIERQRLLDLINKNNLSIEEIESKISKDQTHLYSLAQQHQVR 899
Cdd:TIGR00618 538 AQLETSEEdvyhQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHAL 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 900 VEEIEQWIRQQIQKLQDQGLIEMQKLKNWQLEwrGNLTNMVQDRdftveEFHKWLLKDREQLQSLAMqhnVQIEEIEQFV 979
Cdd:TIGR00618 618 LRKLQPEQDLQDVRLHLQQCSQELALKLTALH--ALQLTLTQER-----VREHALSIRVLPKELLAS---RQLALQKMQS 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 980 KKEEQRFIGMGLLKPSEKL--------TNWQEVERLHLKNLAQQQyksteQLEARLRQDRELLERLARQYSVQVEEiesw 1051
Cdd:TIGR00618 688 EKEQLTYWKEMLAQCQTLLrelethieEYDREFNEIENASSSLGS-----DLAAREDALNQSLKELMHQARTVLKA---- 758
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1052 mkQELARMRDEGQLQIDNLTSWQLAERERLEALIKQNKQWSAEELRAELEKDREHMQTMAFQYHTSVEEIEKWLQSEIER 1131
Cdd:TIGR00618 759 --RTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSR 836
|
730 740 750
....*....|....*....|....*....|....*....
gi 665404577 1132 LKQQGKLNIEqltawQRTEQQRILSLLQQHSNITLEQFQ 1170
Cdd:TIGR00618 837 LEEKSATLGE-----ITHQLLKYEECSKQLAQLTQEQAK 870
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
829-1403 |
6.64e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 6.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 829 EIEQWIKSEGDRlqhEGQLRMESQLNNWQKIERqRLLDLINKNNLSIEEIESKISkdqthlyslaqqhqvRVEEIEQWIR 908
Cdd:PRK03918 136 EIDAILESDESR---EKVVRQILGLDDYENAYK-NLGEVIKEIKRRIERLEKFIK---------------RTENIEELIK 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 909 QQIQKLQdQGLIEMQKLKNWQLEWRGNLTNmvqdrdftVEEFHKWLLKDREQLQSLamqhNVQIEEIEQFVKKEEQRFIG 988
Cdd:PRK03918 197 EKEKELE-EVLREINEISSELPELREELEK--------LEKEVKELEELKEEIEEL----EKELESLEGSKRKLEEKIRE 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 989 M-----GLLKPSEKLTnwQEVERL-HLKNLAQQQYKSTEQLEARLRQDRELLERLARqYSVQVEEIESWMKQelarmRDE 1062
Cdd:PRK03918 264 LeerieELKKEIEELE--EKVKELkELKEKAEEYIKLSEFYEEYLDELREIEKRLSR-LEEEINGIEERIKE-----LEE 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1063 GQLQIDNLTSWQLAERERLEALIKQNKQWsaEELRAELEKDREHMQTMAfqyHTSVEEIEKWLQsEIERLKQQGKLNIEQ 1142
Cdd:PRK03918 336 KEERLEELKKKLKELEKRLEELEERHELY--EEAKAKKEELERLKKRLT---GLTPEKLEKELE-ELEKAKEEIEEEISK 409
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1143 LTAWQRTEQQRILSLlqQHSNITLEQFQAKVHNDRRFL-----MNLAEQHHVHIEEVDNYVKQVIEDLRKnGQFEIEQLQ 1217
Cdd:PRK03918 410 ITARIGELKKEIKEL--KKAIEELKKAKGKCPVCGRELteehrKELLEEYTAELKRIEKELKEIEEKERK-LRKELRELE 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1218 TWQRVERDYIK-----SLISEYKNSLSTAEYE--EKLLADRAHLKHLADQYRINVEQIEEWM--IAELKRLRGSTEETLK 1288
Cdd:PRK03918 487 KVLKKESELIKlkelaEQLKELEEKLKKYNLEelEKKAEEYEKLKEKLIKLKGEIKSLKKELekLEELKKKLAELEKKLD 566
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1289 SLSawqvselERLQNLVKQQNHLTFVEFEmELNQERDRLQKLANQY--SVNVVEIEEWLRQQLINLRTTGQAKVENLSKW 1366
Cdd:PRK03918 567 ELE-------EELAELLKELEELGFESVE-ELEERLKELEPFYNEYleLKDAEKELEREEKELKKLEEELDKAFEELAET 638
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 665404577 1367 Q--VEEQQRLIEMLLKKQQEMPYEQVER---ELTQDHARLQS 1403
Cdd:PRK03918 639 EkrLEELRKELEELEKKYSEEEYEELREeylELSRELAGLRA 680
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1014-1285 |
8.76e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.26 E-value: 8.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1014 QQQYKSTEQLEARLRQDRELLERLARQYSvQVEEIESWMKQELARmrdegQLQIDNLTSWQLAERER------LEALIKQ 1087
Cdd:pfam17380 288 QQQEKFEKMEQERLRQEKEEKAREVERRR-KLEEAEKARQAEMDR-----QAAIYAEQERMAMERERelerirQEERKRE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1088 NKQWSAEELRAELEKDR--EHMQTMAFQYHTSV-EEIE-----KWLQSEIERLKQQGKLNIEQLTAWQRTEQQRILSLLQ 1159
Cdd:pfam17380 362 LERIRQEEIAMEISRMRelERLQMERQQKNERVrQELEaarkvKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLE 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665404577 1160 QHSNITLEQFQakvhndrrfLMNLAEQHHVHI---EEVDNYVKQVIEDLRKNGQFEIEQLQTW---QRVERDYIKSLISE 1233
Cdd:pfam17380 442 EERAREMERVR---------LEEQERQQQVERlrqQEEERKRKKLELEKEKRDRKRAEEQRRKileKELEERKQAMIEEE 512
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 665404577 1234 YKNSLSTAEYEE--KLLADRAHLKHLADQYRINVEQIEEWMIAElkRLRGSTEE 1285
Cdd:pfam17380 513 RKRKLLEKEMEErqKAIYEEERRREAEEERRKQQEMEERRRIQE--QMRKATEE 564
|
|
| |
