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Conserved domains on  [gi|808356952|ref|NP_001294004|]
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Choline/carnitine acyltransferase domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Carn_acyltransf super family cl08288
Choline/Carnitine o-acyltransferase;
1-94 4.17e-38

Choline/Carnitine o-acyltransferase;


The actual alignment was detected with superfamily member pfam00755:

Pssm-ID: 459926  Cd Length: 570  Bit Score: 133.85  E-value: 4.17e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356952    1 MGQGYDRHLLGLKITAQRLSQPTPdFFQDPGYTRMGHFVLSTSTLSTDTIVFGGFGPVVQDGFGIGYNVVPNKLGAVISS 80
Cdd:pfam00755 474 TGQGVDRHLFGLKLVAKEGGLLPP-LFSDPAYKKSNHWVLSTSQLGSPALRGGGFGPVVPDGYGIGYNIQDDSISFSISS 552
                          90
                  ....*....|....*.
gi 808356952   81 NKS--KRDAAAFSNAL 94
Cdd:pfam00755 553 FKSspETDTERFAKAL 568
 
Name Accession Description Interval E-value
Carn_acyltransf pfam00755
Choline/Carnitine o-acyltransferase;
1-94 4.17e-38

Choline/Carnitine o-acyltransferase;


Pssm-ID: 459926  Cd Length: 570  Bit Score: 133.85  E-value: 4.17e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356952    1 MGQGYDRHLLGLKITAQRLSQPTPdFFQDPGYTRMGHFVLSTSTLSTDTIVFGGFGPVVQDGFGIGYNVVPNKLGAVISS 80
Cdd:pfam00755 474 TGQGVDRHLFGLKLVAKEGGLLPP-LFSDPAYKKSNHWVLSTSQLGSPALRGGGFGPVVPDGYGIGYNIQDDSISFSISS 552
                          90
                  ....*....|....*.
gi 808356952   81 NKS--KRDAAAFSNAL 94
Cdd:pfam00755 553 FKSspETDTERFAKAL 568
 
Name Accession Description Interval E-value
Carn_acyltransf pfam00755
Choline/Carnitine o-acyltransferase;
1-94 4.17e-38

Choline/Carnitine o-acyltransferase;


Pssm-ID: 459926  Cd Length: 570  Bit Score: 133.85  E-value: 4.17e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 808356952    1 MGQGYDRHLLGLKITAQRLSQPTPdFFQDPGYTRMGHFVLSTSTLSTDTIVFGGFGPVVQDGFGIGYNVVPNKLGAVISS 80
Cdd:pfam00755 474 TGQGVDRHLFGLKLVAKEGGLLPP-LFSDPAYKKSNHWVLSTSQLGSPALRGGGFGPVVPDGYGIGYNIQDDSISFSISS 552
                          90
                  ....*....|....*.
gi 808356952   81 NKS--KRDAAAFSNAL 94
Cdd:pfam00755 553 FKSspETDTERFAKAL 568
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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