|
Name |
Accession |
Description |
Interval |
E-value |
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
14-1485 |
0e+00 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 1694.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 14 GSTFWNATETWYTNDPDFTPCFEQTALVWTPCAFYWAFVIFDFYYLKASLDRNIPWNKLNVSKALVNLGLLVITALDLIM 93
Cdd:TIGR00957 6 SDPLWDWNVTWHTSNPDFTKCFQNTVLAWVPCFYLWVCFPCYFLYLSRHDRGYIQMTHLNKTKTALGFLLWIVCWADLFY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 94 ALVKKG-GDSELPLYdldVWGPIIKFATFLLLFIFIPLNRKYGVQTTGCQFIFWFLLTVLSIPRCRTevrldaerqKILN 172
Cdd:TIGR00957 86 SFWERShGRAPAPVF---LVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFWLVALVCALAILRS---------KILL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 173 SQQPSEQDfswEEYQFVSFFIFFTFTSIMLILNCFADGMPRQTKYQRGENEIPELSASFLSRITYQWFDKMALKGYRNPL 252
Cdd:TIGR00957 154 ALKEDAIV---DPFRDTTFYIYFALVLSQLVLSCFSDKSPLFSETNHDPNPCPESSASFLSRITFWWITGMAVYGYRQPL 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 253 EEKDLWDLRPQDSCSEVMPIFAHHWNQNVRKNYKNKARV--EPKAQFSNGNVTFENPHGE------KNGRKKGMASIMPP 324
Cdd:TIGR00957 231 EESDLWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAvyGKKDPSKPKGSSQLDANEEvealivKSPHKPRKPSLFKV 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 325 IYKSFGGVFLFGALMKLFTDTLTFAQPQVLSLIISFVEAQDAePEWKGILYAVLLFVLAAAQTFILGQYFHRMFIVGLRI 404
Cdd:TIGR00957 311 LYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMA-PDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRI 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 405 RTALINAIYRKALRISNSTKKESTVGEIVNLMAVDAQRFMELTTYLNMIWSAPLQIGLALYFLWQQLGPSVLAGLAVMII 484
Cdd:TIGR00957 390 KTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVL 469
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 485 LIPVNGVIASRIKTYQIRQMKYKDERVKLMNEVLSGIKVLKLYAWEPSFEKQVLDIRDKEIATLRSTAYLNAGTSFLWSC 564
Cdd:TIGR00957 470 MVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVC 549
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 565 APFLVSLVTFATYVLIDENNVLDATKTFVSLSLFNILRFPLTMLPMLITNLVQTQVSVNRINKFLNSEELDPNSVLHDSS 644
Cdd:TIGR00957 550 TPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTI 629
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 645 KP---HPMSIENGEFSW--GDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKLAYVPQQAW 719
Cdd:TIGR00957 630 KPgegNSITVHNATFTWarDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAW 709
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 720 IQNATVRDNILFGQTYDRKRYNKVIDACALRADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLS 799
Cdd:TIGR00957 710 IQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 789
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 800 AVDAHVGKHIFEEVIGPKGILARKSRVLVTHGVTFLPQVDSIYVIKMGEISESGTFDQLVKNKGAFADFIIQHLQEgnee 879
Cdd:TIGR00957 790 AVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPD---- 865
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 880 eeelnqiKRQISSTADVPELLGTVEKAIKLartesLSDSISVTsaDSLmggGGSLRRRTKRQDSHDS-----VASAASLK 954
Cdd:TIGR00957 866 -------EQQGHLEDSWTALVSGEGKEAKL-----IENGMLVT--DVV---GKQLQRQLSASSSDSGdqsrhHGSSAELQ 928
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 955 KK--QEVEGKLIETEKSQTGGVEFAVYKHYIKSVGIFLSVATLVLNFVFQAFQIGSNLWLTQWANDQNVANDTGLRDMYL 1032
Cdd:TIGR00957 929 KAeaKEETWKLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRL 1008
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1033 GVYGAFGFGQVATNFFSSLAISLGCLKCSQLLHQTLLYYNLRWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIG 1112
Cdd:TIGR00957 1009 SVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMG 1088
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1113 QAYMVLATIVVISLSTPIFLAVIVPIAFLYYFAQRFYVATSRQLMRLESVSRSPIYSHFSETVTGASTIRAYNVGDRFIE 1192
Cdd:TIGR00957 1089 SLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIH 1168
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1193 ESDAKVDKNQVCKYPSVIANRWLAIRLEMVGNLIILFASLFAVLGGQT-NPGLVGLSVSYALQVTQTLNWLVRMSSDIET 1271
Cdd:TIGR00957 1169 QSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVISRHSlSAGLVGLSVSYSLQVTFYLNWLVRMSSEMET 1248
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1272 NIVSVERIKEYGETKQEAPWELEQDKnKPKNWPQEGRVEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSS 1351
Cdd:TIGR00957 1249 NIVAVERLKEYSETEKEAPWQIQETA-PPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSS 1327
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1352 LTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTIIPQDPVLFSGSLRINLDPFEIKTDDEIWKALELSHLKSFVKSL 1431
Cdd:TIGR00957 1328 LTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSAL 1407
|
1450 1460 1470 1480 1490
....*....|....*....|....*....|....*....|....*....|....
gi 939619619 1432 AAGLNHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQ 1485
Cdd:TIGR00957 1408 PDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQ 1461
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
220-1487 |
0e+00 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 1008.88 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 220 GENEIPELSASFLSRITYQWFDKMALKGYRNPLEEKDLWDLRPQDSCSEVMPIFAHHWNQNVRKnyknkarvePKAQfsn 299
Cdd:PLN03130 223 GEQICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELKK---------PKPW--- 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 300 gnvtfenphgekngrkkgmasIMPPIYKSFGGVFLFGALMKLFTDTLTFAQPQVLSLIISfvEAQDAEPEWKGILYAVLL 379
Cdd:PLN03130 291 ---------------------LLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLE--SMQNGEPAWIGYIYAFSI 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 380 FVLAAAQTFILGQYFHRMFIVGLRIRTALINAIYRKALRISNSTKKESTVGEIVNLMAVDAQRFMELTTYLNMIWSAPLQ 459
Cdd:PLN03130 348 FVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHTLWSAPFR 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 460 IGLALYFLWQQLGPSVLAGLAVMIILIPVNGVIASRIKTYQIRQMKYKDERVKLMNEVLSGIKVLKLYAWEPSFEKQVLD 539
Cdd:PLN03130 428 IIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQT 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 540 IRDKEIATLRSTAYLNAGTSFLWSCAPFLVSLVTFATYVLIdeNNVLDATKTFVSLSLFNILRFPLTMLPMLITNLVQTQ 619
Cdd:PLN03130 508 VRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLL--GGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNAN 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 620 VSVNRINKFLNSEE--LDPNSVLhDSSKPhPMSIENGEFSW---GDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAF 694
Cdd:PLN03130 586 VSLKRLEELLLAEErvLLPNPPL-EPGLP-AISIKNGYFSWdskAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAM 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 695 LGEMEKLAGVVNTV-GKLAYVPQQAWIQNATVRDNILFGQTYDRKRYNKVIDACALRADIDILSAGDLTEIGEKGINLSG 773
Cdd:PLN03130 664 LGELPPRSDASVVIrGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISG 743
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 774 GQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEEVIgpKGILARKSRVLVTHGVTFLPQVDSIYVIKMGEISESG 853
Cdd:PLN03130 744 GQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCI--KDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEG 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 854 TFDQLVKNKGAFADFIiqhlqegneeeeelnqikrqisstadvpELLGTVEKAIKLARTESLSDSISVTSADslmgGGGS 933
Cdd:PLN03130 822 TYEELSNNGPLFQKLM----------------------------ENAGKMEEYVEENGEEEDDQTSSKPVAN----GNAN 869
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 934 LRRRtkrqdshdsvaSAASLKKKQEVEGKLIETEKSQTGGVEFAVYKHYIKSVGIFLSVATLVLNFVF-QAFQIGSNLWL 1012
Cdd:PLN03130 870 NLKK-----------DSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLtEVFRVSSSTWL 938
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1013 TQWAnDQNVANDTGlRDMYLGVYGAFGFGQVATNFFSSLAISLGCLKCSQLLHQTLLYYNLRWPMELFDTTPLGRIVNRF 1092
Cdd:PLN03130 939 SEWT-DQGTPKTHG-PLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRF 1016
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1093 SKDIDTID-NVLPFnIRVVIGQAYMVLATIVVISLSTPIFLAVIVPIAFLYYFAQRFYVATSRQLMRLESVSRSPIYSHF 1171
Cdd:PLN03130 1017 AKDLGDIDrNVAVF-VNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQF 1095
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1172 SETVTGASTIRAYNVGDRFIEESDAKVDKNQVCKYPSVIANRWLAIRLEMVGNLIILFASLFAVLGGQ--TNP----GLV 1245
Cdd:PLN03130 1096 GEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGraENQaafaSTM 1175
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1246 GLSVSYALQVTQTLNWLVRMSSDIETNIVSVERIKEYGETKQEAPWELEqDKNKPKNWPQEGRVEFQNFQVRYREGLDLV 1325
Cdd:PLN03130 1176 GLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIE-NNRPPPGWPSSGSIKFEDVVLRYRPELPPV 1254
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1326 LRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTIIPQDPVLFSGSLRINLD 1405
Cdd:PLN03130 1255 LHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLD 1334
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1406 PFEIKTDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQ 1485
Cdd:PLN03130 1335 PFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQ 1414
|
....
gi 939619619 1486 --IR 1487
Cdd:PLN03130 1415 ktIR 1418
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
220-1485 |
0e+00 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 924.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 220 GENEIPELSASFLSRITYQWFDKMALKGYRNPLEEKDLWDLRPQDSCSEVMPIFAHHWNQNVRKnyknkarvePKAqfsn 299
Cdd:PLN03232 223 GENICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESRR---------PKP---- 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 300 gnvtfenphgekngrkkgmaSIMPPIYKSFGGVFLFGALMKLFTDTLTFAQPQVLSLIISfvEAQDAEPEWKGILYAVLL 379
Cdd:PLN03232 290 --------------------WLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQ--SMQEGDPAWVGYVYAFLI 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 380 FVLAAAQTFILGQYFHRMFIVGLRIRTALINAIYRKALRISNSTKKESTVGEIVNLMAVDAQRFMELTTYLNMIWSAPLQ 459
Cdd:PLN03232 348 FFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHGLWSAPFR 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 460 IGLALYFLWQQLGPSVLAGLAVMIILIPVNGVIASRIKTYQIRQMKYKDERVKLMNEVLSGIKVLKLYAWEPSFEKQVLD 539
Cdd:PLN03232 428 IIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQG 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 540 IRDKEIATLRSTAYLNAGTSFLWSCAPFLVSLVTFATYVLIDENnvLDATKTFVSLSLFNILRFPLTMLPMLITNLVQTQ 619
Cdd:PLN03232 508 IRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGD--LTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNAN 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 620 VSVNRINKFLNSEE--LDPNSVLHDSSKphPMSIENGEFSWGDEI---TLRNINIEVKKGSLVALVGTVGSGKSSVVQAF 694
Cdd:PLN03232 586 VSLQRIEELLLSEEriLAQNPPLQPGAP--AISIKNGYFSWDSKTskpTLSDINLEIPVGSLVAIVGGTGEGKTSLISAM 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 695 LGEMEKL-AGVVNTVGKLAYVPQQAWIQNATVRDNILFGQTYDRKRYNKVIDACALRADIDILSAGDLTEIGEKGINLSG 773
Cdd:PLN03232 664 LGELSHAeTSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISG 743
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 774 GQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEEVIgpKGILARKSRVLVTHGVTFLPQVDSIYVIKMGEISESG 853
Cdd:PLN03232 744 GQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCM--KDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEG 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 854 TFDQLVKNKGAFADFIiqhlqegneeeeelnqikrqisstadvpellgtvEKAIKLARTESLSdsisvTSADSLMGGGGS 933
Cdd:PLN03232 822 TFAELSKSGSLFKKLM----------------------------------ENAGKMDATQEVN-----TNDENILKLGPT 862
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 934 LRRRTKRQdshdsvaSAASLKKKQEVEGKLIETEKSQTGGVEFAVYKHYIKSVGIFLSVATLVLNFVF-QAFQIGSNLWL 1012
Cdd:PLN03232 863 VTIDVSER-------NLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTtEVLRVSSSTWL 935
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1013 TQWANDQNVANDTglRDMYLGVYGAFGFGQVATNFFSSLAISLGCLKCSQLLHQTLLYYNLRWPMELFDTTPLGRIVNRF 1092
Cdd:PLN03232 936 SIWTDQSTPKSYS--PGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRF 1013
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1093 SKDIDTIDNVLPFNIRVVIGQAYMVLATIVVISLSTPIFLAVIVPIAFLYYFAQRFYVATSRQLMRLESVSRSPIYSHFS 1172
Cdd:PLN03232 1014 SKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFG 1093
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1173 ETVTGASTIRAYNVGDRFIEESDAKVDKNQVCKYPSVIANRWLAIRLEMVGNLIILFASLFAVLG-GQTN-----PGLVG 1246
Cdd:PLN03232 1094 EALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRnGNAEnqagfASTMG 1173
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1247 LSVSYALQVTQTLNWLVRMSSDIETNIVSVERIKEYGETKQEAPwELEQDKNKPKNWPQEGRVEFQNFQVRYREGLDLVL 1326
Cdd:PLN03232 1174 LLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEAT-AIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVL 1252
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1327 RGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTIIPQDPVLFSGSLRINLDP 1406
Cdd:PLN03232 1253 HGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDP 1332
|
1210 1220 1230 1240 1250 1260 1270
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 939619619 1407 FEIKTDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQ 1485
Cdd:PLN03232 1333 FSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQ 1411
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
320-1485 |
0e+00 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 784.35 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 320 SIMPPIYKSFGGVFLFGALMKLFTDTLTFAQPQVLSLIISFVEAQDAEPEWkGILYAVLLFVLAAAQTFILGQYFHRMFI 399
Cdd:PTZ00243 233 SLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGR-GLGLVLTLFLTQLIQSVCLHRFYYISIR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 400 VGLRIRTALINAIYRKALRISNST--KKESTVGEIVNLMAVDAQRFMELTTYLNMIWSAPLQIGLALYFLWQQLGPSVLA 477
Cdd:PTZ00243 312 CGLQYRSALNALIFEKCFTISSKSlaQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALM 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 478 GLAVMIILIPVNGVIASRIKTYQIRQMKYKDERVKLMNEVLSGIKVLKLYAWEPSFEKQVLDIRDKEIATLRSTAYLNAG 557
Cdd:PTZ00243 392 AVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVA 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 558 TSFLWSCAPFLVSLVTFATYVLIdeNNVLDATKTFVSLSLFNILRFPLTMLPMLITNLVQTQVSVNRINKFLNSEE---- 633
Cdd:PTZ00243 472 TSFVNNATPTLMIAVVFTVYYLL--GHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNatcs 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 634 -------------------------------------------------------------------LDPNSVLHDSSKP 646
Cdd:PTZ00243 550 tvqdmeeywreqrehstacqlaavlenvdvtafvpvklprapkvktsllsralrmlcceqcrptkrhPSPSVVVEDTDYG 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 647 HPMS----IENGEFSWGDEIT-------------------------LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGE 697
Cdd:PTZ00243 630 SPSSasrhIVEGGTGGGHEATptsersaktpkmktddffelepkvlLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQ 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 698 MEKLAGVVNTVGKLAYVPQQAWIQNATVRDNILFGQTYDRKRYNKVIDACALRADIDILSAGDLTEIGEKGINLSGGQKQ 777
Cdd:PTZ00243 710 FEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKA 789
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 778 RISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEEVIgpKGILARKSRVLVTHGVTFLPQVDsiYVIKMGeisesgtfDQ 857
Cdd:PTZ00243 790 RVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF--LGALAGKTRVLATHQVHVVPRAD--YVVALG--------DG 857
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 858 LVKNKGAFADFIiqhlqegneeeeelnqikrQISSTADvpelLGTVEKAIKLARtESLSDSiSVTSADSLMGGGGSLRRR 937
Cdd:PTZ00243 858 RVEFSGSSADFM-------------------RTSLYAT----LAAELKENKDSK-EGDADA-EVAEVDAAPGGAVDHEPP 912
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 938 TKRQdshDSVASAASLKKKQEVEGKLIETEKSQTGGVEFAVYKHYIKSVGIFLSVATLVLNFVF-QAFQIGSNLWLTQWA 1016
Cdd:PTZ00243 913 VAKQ---EGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVtELVTVSSGVWLSMWS 989
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1017 NDQNVANDTGLRDMYLGVYGAFGFGQVATNFFSSLAISLGCLKcsqlLHQTLLYYNLRWPMELFDTTPLGRIVNRFSKDI 1096
Cdd:PTZ00243 990 TRSFKLSAATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRN----MHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDI 1065
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1097 DTIDNVLPFNIRVVIGQAYMVLATIVVISLSTPIFLAVIVPIAFLYYFAQRFYVATSRQLMRLESVSRSPIYSHFSETVT 1176
Cdd:PTZ00243 1066 DILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQ 1145
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1177 GASTIRAYNVGDRFIEESDAKVDKNQVCKYPSVIANRWLAIRLEMVGNLIILFASLFAVLG-----GQTNPGLVGLSVSY 1251
Cdd:PTZ00243 1146 GSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGtmlraTSQEIGLVSLSLTM 1225
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1252 ALQVTQTLNWLVRMSSDIETNIVSVERIKEY-GETKQEAPWELEQDKNK----------------------PKNWP---Q 1305
Cdd:PTZ00243 1226 AMQTTATLNWLVRQVATVEADMNSVERLLYYtDEVPHEDMPELDEEVDAlerrtgmaadvtgtvviepaspTSAAPhpvQ 1305
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1306 EGRVEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSR 1385
Cdd:PTZ00243 1306 AGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQ 1385
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1386 LTIIPQDPVLFSGSLRINLDPFEIKTDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLRKTK 1465
Cdd:PTZ00243 1386 FSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGS 1465
|
1290 1300
....*....|....*....|.
gi 939619619 1466 VLVL-DEATAAVDLETDDLIQ 1485
Cdd:PTZ00243 1466 GFILmDEATANIDPALDRQIQ 1486
|
|
| ABC_6TM_MRP1_2_3_6_D1_like |
cd18595 |
Six-transmembrane helical domain 1 (TMD1) of multidrug resistance-associated proteins (MRPs) 1, ... |
335-625 |
1.71e-176 |
|
Six-transmembrane helical domain 1 (TMD1) of multidrug resistance-associated proteins (MRPs) 1, 2, 3 and 6; This group represents the six-transmembrane domain 1 (TMD1) of multidrug resistance-associated proteins (MRPs) 1, 2, 3 and 6, all of which are belonging to the subfamily C of the ATP-binding cassette (ABC) transporter superfamily. The MRP subfamily (ABCC subfamily) is composed of 13 members, of which MRP1 to MRP9 are the major transporters that cause multidrug resistance in tumor cells by pumping anticancer drugs out of the cell. These nine MRP members function as ATP-dependent exporters for endogenous substances and xenobiotics. MRP family can be divided into two groups, depending on their structural architecture. MRP4, MRP5, MRP8, and MRP9 (ABCC4, 5, 11 and 12, respectively) have a typical ABC transporter structure and each composed of two transmembrane domains (TMD1 and TMD2) and two nucleotide domains (NBD1 and NBD2). On the other hand, MRP1, 2, 3, 6 and 7 (ABCC1, 2, 3, 6 and 7, respectively) have an additional N-terminal five transmembrane segments in a single domain (TMD0) connected to the core (TMD-NBD) by a cytoplasmic linker (L0).
Pssm-ID: 350039 [Multi-domain] Cd Length: 290 Bit Score: 527.81 E-value: 1.71e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 335 FGALMKLFTDTLTFAQPQVLSLIISFVEAQDaEPEWKGILYAVLLFVLAAAQTFILGQYFHRMFIVGLRIRTALINAIYR 414
Cdd:cd18595 1 LAALLKLLSDILLFASPQLLKLLINFVEDPD-EPLWKGYLYAVLLFLVSIIQSLLLHQYFHRCFRLGMRIRTALTSAIYR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 415 KALRISNSTKKESTVGEIVNLMAVDAQRFMELTTYLNMIWSAPLQIGLALYFLWQQLGPSVLAGLAVMIILIPVNGVIAS 494
Cdd:cd18595 80 KALRLSNSARKKSTVGEIVNLMSVDAQRIQDLVPYLNMLWSAPLQIILALYFLWQTLGPSVLAGLGVMILLIPLNAVLAR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 495 RIKTYQIRQMKYKDERVKLMNEVLSGIKVLKLYAWEPSFEKQVLDIRDKEIATLRSTAYLNAGTSFLWSCAPFLVSLVTF 574
Cdd:cd18595 160 KIKKLQVKQMKLKDERIKLMNEILNGIKVLKLYAWEESFEKKILKIREKELKLLKKAAYLNAVSSFLWTCAPFLVSLATF 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 939619619 575 ATYVLIDENNVLDATKTFVSLSLFNILRFPLTMLPMLITNLVQTQVSVNRI 625
Cdd:cd18595 240 ATYVLSDPDNVLDAEKAFVSLSLFNILRFPLSMLPMVISNLVQASVSLKRL 290
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
225-1485 |
3.74e-167 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 542.96 E-value: 3.74e-167
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 225 PELSASFLSRITYQWFDKMALKGYRNPLEEKDLWDLRPQDSCSEVMPIFAHHWNQNVRKNYKNkarvePKaqfsngnvtf 304
Cdd:TIGR01271 5 PVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASAKKN-----PK---------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 305 enphgekngrkkgmasIMPPIYKSFGGVFLFGALMKLFTDTLTFAQPQVLSLIISFVEAQDAEPEWKGILYAVLLFVLAA 384
Cdd:TIGR01271 70 ----------------LLNALRRCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFI 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 385 AQTFILGQYFHRMFIVGLRIRTALINAIYRKALRISNSTKKESTVGEIVNLMAVDAQRFMELTTYLNMIWSAPLQIGLAL 464
Cdd:TIGR01271 134 VRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLM 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 465 YFLWQQLGPSVLAGLAVMIILIPVNGVIASRIKTYQIRQMKYKDERVKLMNEVLSGIKVLKLYAWEPSFEKQVLDIRDKE 544
Cdd:TIGR01271 214 GLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDE 293
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 545 IATLRSTAYLNAGTSFLWSCAPFLVSLVTFATYVLIdenNVLDATKTFVSLSLFNILRFPLT-MLPMLITNLVQTQVSVN 623
Cdd:TIGR01271 294 LKLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYALI---KGIILRRIFTTISYCIVLRMTVTrQFPGAIQTWYDSLGAIT 370
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 624 RINKFLNSEEldpNSVLHDSSKPHPMSIENGEFSWGDEI----------------------------------TLRNINI 669
Cdd:TIGR01271 371 KIQDFLCKEE---YKTLEYNLTTTEVEMVNVTASWDEGIgelfekikqnnkarkqpngddglffsnfslyvtpVLKNISF 447
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 670 EVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKLAYVPQQAWIQNATVRDNILFGQTYDRKRYNKVIDACAL 749
Cdd:TIGR01271 448 KLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQL 527
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 750 RADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEEVIGPkgILARKSRVLVT 829
Cdd:TIGR01271 528 EEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCK--LMSNKTRILVT 605
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 830 HGVTFLPQVDSIYVIKMGEISESGTFDQLVKNKGAFADFIIQHLQEGNEEEEELNQIK----RQISSTADVPELLGT--- 902
Cdd:TIGR01271 606 SKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFDNFSAERRNSILtetlRRVSIDGDSTVFSGPeti 685
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 903 --------------------------------VEKAIKLARTESLSDSISVTS-------ADSLMG-------------- 929
Cdd:TIGR01271 686 kqsfkqpppefaekrkqsiilnpiasarkfsfVQMGPQKAQATTIEDAVREPSerkfslvPEDEQGeeslprgnqyhhgl 765
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 930 -------------------GGGSLRRRT----------------------KRQDSHDSVASAASLKKKQEVEGKLIETEK 968
Cdd:TIGR01271 766 qhqaqrrqsvlqlmthsnrGENRREQLQtsfrkkssitqqnelaseldiySRRLSKDSVYEISEEINEEDLKECFADERE 845
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 969 SQTGGVEFAVYKHYIKSVGIFLSVATLVLnFVFQAFQIGS--NLWL------TQWANDQNVANDTGLRDMY--------- 1031
Cdd:TIGR01271 846 NVFETTTWNTYLRYITTNRNLVFVLIFCL-VIFLAEVAASllGLWLitdnpsAPNYVDQQHANASSPDVQKpviitptsa 924
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1032 ---LGVYGAFGFGQVATNFFSSLAISLGCLKCSQLLHQTLLYYNLRWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIR 1108
Cdd:TIGR01271 925 yyiFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLF 1004
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1109 VVIGQAYMVLATIVVISLSTPIFLAVIVPIAFLYYFAQRFYVATSRQLMRLESVSRSPIYSHFSETVTGASTIRAYNVGD 1188
Cdd:TIGR01271 1005 DFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQS 1084
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1189 RFIEESDAKVDKNQVCKYPSVIANRWLAIRLEMVGNLIILFASLFAVLGGQTNPGLVGLSVSYALQVTQTLNWLVRMSSD 1268
Cdd:TIGR01271 1085 YFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSID 1164
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1269 IETNIVSVERIKEYGETKQEAP--------WELEQD-----KNKPKNWPQEGRVEFQNFQVRYREGLDLVLRGVSFNIQG 1335
Cdd:TIGR01271 1165 VDGLMRSVSRVFKFIDLPQEEPrpsggggkYQLSTVlvienPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEG 1244
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1336 GEKVGIVGRTGAGKSSLTLALFRIIeAAGGRISIDGVDIASMGLHMLRSRLTIIPQDPVLFSGSLRINLDPFEIKTDDEI 1415
Cdd:TIGR01271 1245 GQRVGLLGRTGSGKSTLLSALLRLL-STEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEI 1323
|
1370 1380 1390 1400 1410 1420 1430
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1416 WKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQ 1485
Cdd:TIGR01271 1324 WKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIR 1393
|
|
| ABC_6TM_MRP1_2_3_6_D2_like |
cd18603 |
Six-transmembrane helical domain 2 (TMD2) of multidrug resistance-associated proteins (MRPs) 1, ... |
991-1282 |
6.41e-165 |
|
Six-transmembrane helical domain 2 (TMD2) of multidrug resistance-associated proteins (MRPs) 1, 2, 3 and 6; This group represents the six-transmembrane domain 2 (TMD2) of multidrug resistance-associated proteins (MRPs) 1, 2, 3 and 6, all of which are belonging to the subfamily C of the ATP-binding cassette (ABC) transporter superfamily. The MRP subfamily (ABCC subfamily) is composed of 13 members, of which MRP1 to MRP9 are the major transporters that cause multidrug resistance in tumor cells by pumping anticancer drugs out of the cell. These nine MRP members function as ATP-dependent exporters for endogenous substances and xenobiotics. MRP family can be divided into two groups, depending on their structural architecture. MRP4, MRP5, MRP8, and MRP9 (ABCC4, 5, 11 and 12, respectively) have a typical ABC transporter structure and each composed of two transmembrane domains (TMD1 and TMD2) and two nucleotide domains (NBD1 and NBD2). On the other hand, MRP1, 2, 3, 6 and 7 (ABCC1, 2, 3, 6 and 7, respectively) have an additional N-terminal five transmembrane segments in a single domain (TMD0) connected to the core (TMD-NBD) by a cytoplasmic linker (L0).
Pssm-ID: 350047 [Multi-domain] Cd Length: 296 Bit Score: 497.39 E-value: 6.41e-165
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 991 SVATLVLNFVFQAFQIGSNLWLTQWAND--QNVANDTGLRDMYLGVYGAFGFGQVATNFFSSLAISLGCLKCSQLLHQTL 1068
Cdd:cd18603 1 SLLILLLYLLSQAFSVGSNIWLSEWSDDpaLNGTQDTEQRDYRLGVYGALGLGQAIFVFLGSLALALGCVRASRNLHNKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1069 LYYNLRWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIVVISLSTPIFLAVIVPIAFLYYFAQRF 1148
Cdd:cd18603 81 LHNILRAPMSFFDTTPLGRILNRFSKDIDTVDNTLPQNIRSFLNCLFQVISTLVVISISTPIFLVVIIPLAILYFFIQRF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1149 YVATSRQLMRLESVSRSPIYSHFSETVTGASTIRAYNVGDRFIEESDAKVDKNQVCKYPSVIANRWLAIRLEMVGNLIIL 1228
Cdd:cd18603 161 YVATSRQLKRLESVSRSPIYSHFSETLQGASTIRAYGVQERFIRESDRRVDENQRAYYPSIVSNRWLAVRLEFLGNLIVL 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 939619619 1229 FASLFAVLGGQT-NPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERIKEY 1282
Cdd:cd18603 241 FAALFAVLSRDSlSPGLVGLSISYALQITQTLNWLVRMTSELETNIVSVERIKEY 295
|
|
| ABC_6TM_ABCC_D1 |
cd18579 |
Six-transmembrane helical domain 1 (TMD1) of the ABC transporters, subfamily C; This group ... |
335-625 |
7.42e-127 |
|
Six-transmembrane helical domain 1 (TMD1) of the ABC transporters, subfamily C; This group represents the six-transmembrane domain 1 (TMD1)of the ABC transporters that belong to the ABCC subfamily, such as the sulphonylurea receptors SUR1/2 (ABCC8), the cystic fibrosis transmembrane conductance regulator (CFTR, ABCC7), Multidrug-Resistance associated Proteins (MRP1-9), VMR1 (vacuolar multidrug resistance protein 1), and YOR1 (yeast oligomycin resistance transporter protein). This TM subunit exhibits the type 3 ATP-binding cassette (ABC) exporter fold, which is characterized by 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The type 3 ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds, a various type of lipids and polypeptides. ABC transporters typically consist of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane by alternating between inward- and outward-facing conformations. By contrast, bacterial ABC exporters are typically assembled from dimers of TMD-NBD half-transporters. Thus, most bacterial ABC transporters are comprised of two identical TMDs and two identical NBDs.
Pssm-ID: 350023 [Multi-domain] Cd Length: 289 Bit Score: 395.70 E-value: 7.42e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 335 FGALMKLFTDTLTFAQPQVLSLIISFVEAQDAEPEWKGILYAVLLFVLAAAQTFILGQYFHRMFIVGLRIRTALINAIYR 414
Cdd:cd18579 1 LAGLLKLLEDLLSLAQPLLLGLLISYLSSYPDEPLSEGYLLALALFLVSLLQSLLLHQYFFLSFRLGMRVRSALSSLIYR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 415 KALRISNSTKKESTVGEIVNLMAVDAQRFMELTTYLNMIWSAPLQIGLALYFLWQQLGPSVLAGLAVMIILIPVNGVIAS 494
Cdd:cd18579 81 KALRLSSSARQETSTGEIVNLMSVDVQRIEDFFLFLHYLWSAPLQIIVALYLLYRLLGWAALAGLGVLLLLIPLQAFLAK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 495 RIKTYQIRQMKYKDERVKLMNEVLSGIKVLKLYAWEPSFEKQVLDIRDKEIATLRSTAYLNAGTSFLWSCAPFLVSLVTF 574
Cdd:cd18579 161 LISKLRKKLMKATDERVKLTNEILSGIKVIKLYAWEKPFLKRIEELRKKELKALRKFGYLRALNSFLFFSTPVLVSLATF 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 939619619 575 ATYVLIDenNVLDATKTFVSLSLFNILRFPLTMLPMLITNLVQTQVSVNRI 625
Cdd:cd18579 241 ATYVLLG--NPLTAAKVFTALSLFNLLRFPLLMLPQAISSLIEALVSLKRI 289
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
649-848 |
1.94e-109 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 344.45 E-value: 1.94e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 649 MSIENGEFSWGDE-----ITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKLAYVPQQAWIQNA 723
Cdd:cd03250 1 ISVEDASFTWDSGeqetsFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 724 TVRDNILFGQTYDRKRYNKVIDACALRADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDA 803
Cdd:cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 939619619 804 HVGKHIFEEVIGPKGiLARKSRVLVTHGVTFLPQVDSIYVIKMGE 848
Cdd:cd03250 161 HVGRHIFENCILGLL-LNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
|
| ABC_6TM_ABCC_D2 |
cd18580 |
Six-transmembrane helical domain 2 (TMD2) of the ABC transporters, subfamily C; This group ... |
991-1282 |
3.58e-109 |
|
Six-transmembrane helical domain 2 (TMD2) of the ABC transporters, subfamily C; This group represents the six-transmembrane domain 2 (TMD2) of the ABC transporters that belong to the ABCC subfamily, such as the sulphonylurea receptors SUR1/2 (ABCC8), the cystic fibrosis transmembrane conductance regulator (CFTR, ABCC7), Multidrug-Resistance associated Proteins (MRP1-9), VMR1 (vacuolar multidrug resistance protein 1), and YOR1 (yeast oligomycin resistance transporter protein). This TM subunit exhibits the type 3 ATP-binding cassette (ABC) exporter fold, which is characterized by 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The type 3 ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds, a various type of lipids and polypeptides. All ABC transporters share a common architecture of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane by alternating between inward- and outward-facing conformations. By contrast, bacterial ABC exporters are typically assembled from dimers of TMD-NBD half-transporters. Thus, most bacterial ABC transporters are comprised of two identical TMDs and two identical NBDs.
Pssm-ID: 350024 [Multi-domain] Cd Length: 294 Bit Score: 347.57 E-value: 3.58e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 991 SVATLVLNFVFQAFQIGSNLWLTQWAnDQNVANDTGLRDMYLGVYGAFGF-GQVATNFFSSLAISLGCLKCSQLLHQTLL 1069
Cdd:cd18580 1 VLLLLLLLLLLAFLSQFSNIWLDWWS-SDWSSSPNSSSGYYLGVYAALLVlASVLLVLLRWLLFVLAGLRASRRLHDKLL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1070 YYNLRWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIVVISLSTPIFLAVIVPIAFLYYFAQRFY 1149
Cdd:cd18580 80 RSVLRAPMSFFDTTPSGRILNRFSKDIGLIDEELPLALLDFLQSLFSVLGSLIVIAIVSPYFLIVLPPLLVVYYLLQRYY 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1150 VATSRQLMRLESVSRSPIYSHFSETVTGASTIRAYNVGDRFIEESDAKVDKNQVCKYPSVIANRWLAIRLEMVGNLIILF 1229
Cdd:cd18580 160 LRTSRQLRRLESESRSPLYSHFSETLSGLSTIRAFGWQERFIEENLRLLDASQRAFYLLLAVQRWLGLRLDLLGALLALV 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 939619619 1230 ASLFAV-LGGQTNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERIKEY 1282
Cdd:cd18580 240 VALLAVlLRSSISAGLVGLALTYALSLTGSLQWLVRQWTELETSMVSVERILEY 293
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
1307-1491 |
1.05e-106 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 337.93 E-value: 1.05e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1307 GRVEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRL 1386
Cdd:cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1387 TIIPQDPVLFSGSLRINLDPFEIKTDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLRKTKV 1466
Cdd:cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160
|
170 180
....*....|....*....|....*..
gi 939619619 1467 LVLDEATAAVDLETDDLIQ--IRHFCH 1491
Cdd:cd03244 161 LVLDEATASVDPETDALIQktIREAFK 187
|
|
| ABC_6TM_YOR1_D2_like |
cd18606 |
Six-transmembrane helical domain 2 (TMD2) of the yeast Yor1p and similar proteins; ABCC ... |
988-1283 |
2.55e-101 |
|
Six-transmembrane helical domain 2 (TMD2) of the yeast Yor1p and similar proteins; ABCC subfamily; This group includes the six-transmembrane domain 1 (TMD1) of the yeast Yor1p, an oligomycin resistance ABC transporter, and similar proteins. Members of this group belong to the MRP (multidrug resistance-associated protein) subfamily (ABCC). In addition to Yor1p, yeast ABCC (also termed MRP/CFTR) subfamily also comprises five other members (Ycf1p, Bpt1p, Ybt1p/Bat1p, Nft1p, and Vmr1p), which are not included in this group. Yor1p is a plasma membrane ATP-binding transporter that mediates export of many different organic anions including oligomycin. While Yor1p has been shown to localize to the plasma membrane, the other 4 members (Ycf1p, Bpt1p, Ybt1p/Bat1p, Nft1p and Vmr1p) have been shown to localize to the vacuolar membrane.
Pssm-ID: 350050 [Multi-domain] Cd Length: 290 Bit Score: 325.58 E-value: 2.55e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 988 IFLSVATLVLnfvFQAFQIGSNLWLTQWANDQ-NVANDTglrdmYLGVYGAFGFGQVATNFFSSLAISLGCLKCSQLLHQ 1066
Cdd:cd18606 1 LPLLLLLLIL---SQFAQVFTNLWLSFWTEDFfGLSQGF-----YIGIYAGLGVLQAIFLFLFGLLLAYLGIRASKRLHN 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1067 TLLYYNLRWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIVVISLSTPIFLAVIVPIAFLYYFAQ 1146
Cdd:cd18606 73 KALKRVLRAPMSFFDTTPLGRILNRFSKDTDVLDNELPDSLRMFLYTLSSIIGTFILIIIYLPWFAIALPPLLVLYYFIA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1147 RFYVATSRQLMRLESVSRSPIYSHFSETVTGASTIRAYNVGDRFIEESDAKVDKNQVCKYPSVIANRWLAIRLEMVGNLI 1226
Cdd:cd18606 153 NYYRASSRELKRLESILRSFVYANFSESLSGLSTIRAYGAQDRFIKKNEKLIDNMNRAYFLTIANQRWLAIRLDLLGSLL 232
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 939619619 1227 ILFASLFAVLG-GQTNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERIKEYG 1283
Cdd:cd18606 233 VLIVALLCVTRrFSISPSSTGLVLSYVLQITQVLSWLVRQFAEVENNMNSVERLLHYA 290
|
|
| ABC_6TM_ABCC |
cd18559 |
Six-transmembrane helical domain of the ABC transporters, subfamily C; This group represents ... |
338-625 |
1.81e-98 |
|
Six-transmembrane helical domain of the ABC transporters, subfamily C; This group represents the 6-transmembrane (6TM) domain of the ABC transporters that belong to the ABCC subfamily, such as the sulphonylurea receptors SUR1/2 (ABCC8), the cystic fibrosis transmembrane conductance regulator (CFTR, ABCC7), Multidrug-Resistance associated Proteins (MRP1-9), VMR1 (vacuolar multidrug resistance protein 1), and YOR1 (yeast oligomycin resistance transporter protein). This TM subunit exhibits the type 3 ATP-binding cassette (ABC) exporter fold, which is characterized by 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The type 3 ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds, a various type of lipids and polypeptides.
Pssm-ID: 350003 [Multi-domain] Cd Length: 290 Bit Score: 318.00 E-value: 1.81e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 338 LMKLFTDTLTFAQPQVLSLIISFVEAQDaEPEWKGILYAVLLFVLAAAQTFILGQYFHRMFIVGLRIRTALINAIYRKAL 417
Cdd:cd18559 4 LIKLVLCNHVFSGPSNLWLLLWFDDPVN-GPQEHGQVYLSVLGALAILQGITVFQYSMAVSIGGIFASRAVHLDLYHKAL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 418 RISNSTKKESTVGEIVNLMAVDAQRFMELTTYLNMIWSAPLQIGLALYFLWQQLGPSVLAGLAVMIILIPVNGVIASRIK 497
Cdd:cd18559 83 RSPISFFERTPSGELVNLFSKDLDRVDSMAPQVIKMWMGPLQNVIGLYLLILLAGPMAAVGIPLGLLYVPVNRVYAASSR 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 498 TYQIRQMKYKDERVKLMNEVLSGIKVLKLYAWEPSFEKQVLDIRDKEIATLRSTAYLNAGTSFLWSCAPFLVSLVTFATY 577
Cdd:cd18559 163 QLKRLESVSKDPRYKLFNETLLGISVIKAFEWEEAFIRQVDAKRDNELAYLPSIVYLRALAVRLWCVGPCIVLFASFFAY 242
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 939619619 578 VLIDENNVLDATKTFVSLSLFNILRFPLTMLPMLITNLVQTQVSVNRI 625
Cdd:cd18559 243 VSRHSLAGLVALKVFYSLALTTYLNWPLNMSPEVITNIVAAEVSLERS 290
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
992-1485 |
3.96e-96 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 322.11 E-value: 3.96e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 992 VATLVLNFVFQAFQIGSnLWLTQWANDQNVAN-DTGLRDMYLGVYGAFGFGQVATNFFSSLAISLGCLKCSQLLHQTLLY 1070
Cdd:COG1132 24 ILALLLLLLSALLELLL-PLLLGRIIDALLAGgDLSALLLLLLLLLGLALLRALLSYLQRYLLARLAQRVVADLRRDLFE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1071 YNLRWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIVV-ISLSTPIFLAVIVPIAfLYYFAQRFY 1149
Cdd:COG1132 103 HLLRLPLSFFDRRRTGDLLSRLTNDVDAVEQFLAHGLPQLVRSVVTLIGALVVlFVIDWRLALIVLLVLP-LLLLVLRLF 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1150 VATSRQLMRLESVSRSPIYSHFSETVTGASTIRAYNVGDRFIEESDAKVDKNQVCKYPSVIANRWLAIRLEMVGNL---I 1226
Cdd:COG1132 182 GRRLRKLFRRVQEALAELNGRLQESLSGIRVVKAFGREERELERFREANEELRRANLRAARLSALFFPLMELLGNLglaL 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1227 ILFASLFAVLGGQTNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERIKEYGETKQEAPwELEQDKNKPknwPQE 1306
Cdd:COG1132 262 VLLVGGLLVLSGSLTVGDLVAFILYLLRLFGPLRQLANVLNQLQRALASAERIFELLDEPPEIP-DPPGAVPLP---PVR 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1307 GRVEFQNFQVRYREGlDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRL 1386
Cdd:COG1132 338 GEIEFENVSFSYPGD-RPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLESLRRQI 416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1387 TIIPQDPVLFSGSLRINL---DPfEIkTDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLRK 1463
Cdd:COG1132 417 GVVPQDTFLFSGTIRENIrygRP-DA-TDEEVEEAAKAAQAHEFIEALPDGYDTVVGERGVNLSGGQRQRIAIARALLKD 494
|
490 500
....*....|....*....|..
gi 939619619 1464 TKVLVLDEATAAVDLETDDLIQ 1485
Cdd:COG1132 495 PPILILDEATSALDTETEALIQ 516
|
|
| ABC_6TM_VMR1_D1_like |
cd18596 |
Six-transmembrane helical domain 1 (TMD1) of the yeast Vmr1p, Ybt1p and Nft1; ABCC subfamily; ... |
337-625 |
5.54e-93 |
|
Six-transmembrane helical domain 1 (TMD1) of the yeast Vmr1p, Ybt1p and Nft1; ABCC subfamily; This group includes the six-transmembrane domain 1 (TMD1) of the yeast Vmr1p, Ybt1p and Nft1, all of which are ABC transporters of the MRP (multidrug resistance-associated protein) subfamily (ABCC). Yeast ABCC (also termed MRP/CFTR) subfamily includes six members (Ycf1p, Bpt1p, Ybt1p/Bat1p, Nft1p, Vmr1p, and Yor1p), of which three members (Ycf1p, Bpt1P and Yor1p) are not included here. While Yor1p, an oligomycin resistance ABC transporter, has been shown to localize to the plasma membrane, the other 4 members (Ycf1p, Bpt1p, Ybt1p/Bat1p, Nft1p and Vmr1p) have been shown to localize to the vacuolar membrane. Ybt1p is originally identified as a bile acid transporter and regulates membrane fusion through Ca2+ transport modulation. Ybt1p also plays a part in ade2 pigment transport. Moreover, Ybt1p has been recently shown to translocate phosphatidylcholine from the outer leaflet of the vacuole to the inner leaflet for degradation and choline recycling. Vmr1p, a vacuolar membrane protein, participates in the export of numerous growth inhibitors from the cell, such as cycloheximide, 2,4-dinitrophenole, cadmium and other toxic metals. Nft1p is not well-characterized, but it is proposed to be regulate Ycf1p, which is involved in heavy metal detoxification.
Pssm-ID: 350040 [Multi-domain] Cd Length: 309 Bit Score: 303.26 E-value: 5.54e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 337 ALMKLFTDTLTFAQPQVLSLIISFVEAQDAEPEWKGILYAVLLFVLAAAQTFILGQYFHRMFIVGLRIRTALINAIYRKA 416
Cdd:cd18596 3 ALLAVLSSVLSFAPPFFLNRLLRYLEDPGEDATVRPWVWVLLLFLGPLLSSLLDQQYLWIGRRLSVRLRAILTQLIFEKA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 417 LRI-------------------SNSTKKESTVGEIVNLMAVDAQRFMELTTYLNMIWSAPLQIGLALYFLWQQLGPSVLA 477
Cdd:cd18596 83 LRRrdksgssksseskkkdkeeDEDEKSSASVGKINNLMSVDANRISEFAAFLHLLVSAPLQIVIAIVFLYRLLGWSALV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 478 GLAVMIILIPVNGVIASRIKTYQIRQMKYKDERVKLMNEVLSGIKVLKLYAWEPSFEKQVLDIRDKEIATLRSTAYLNAG 557
Cdd:cd18596 163 GLAVMVLLLPLNGYLAKRYSRAQKELMKARDARVQLVTEVLQGIRMIKFFAWERKWEERILEAREEELKWLRKRFLLDLL 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 939619619 558 TSFLWSCAPFLVSLVTFATYVLIdENNVLDATKTFVSLSLFNILRFPLTMLPMLITNLVQTQVSVNRI 625
Cdd:cd18596 243 LSLLWFLIPILVTVVTFATYTLV-MGQELTASVAFTSLALFNMLRGPLNVLPELITQLLQAKVSLDRI 309
|
|
| ABC_6TM_VMR1_D2_like |
cd18604 |
Six-transmembrane helical domain 2 (TMD2) of the yeast Vmr1p, Ybt1p and Nft1; ABCC subfamily; ... |
992-1282 |
8.16e-93 |
|
Six-transmembrane helical domain 2 (TMD2) of the yeast Vmr1p, Ybt1p and Nft1; ABCC subfamily; This group includes the six-transmembrane domain 2 (TMD2) of the yeast Vmr1p, Ybt1p and Nft1, all of which are ABC transporters of the MRP (multidrug resistance-associated protein) subfamily (ABCC). Yeast ABCC (also termed MRP/CFTR) subfamily includes six members (Ycf1p, Bpt1p, Ybt1p/Bat1p, Nft1p, Vmr1p, and Yor1p), of which three members (Ycf1p, Bpt1P and Yor1p) are not included here. While Yor1p, an oligomycin resistance ABC transporter, has been shown to localize to the plasma membrane, the other 4 members (Ycf1p, Bpt1p, Ybt1p/Bat1p, Nft1p and Vmr1p) have been shown to localize to the vacuolar membrane. Ybt1p is originally identified as a bile acid transporter and regulates membrane fusion through Ca2+ transport modulation. Ybt1p also plays a part in ade2 pigment transport. Moreover, Ybt1p has been recently shown to translocate phosphatidylcholine from the outer leaflet of the vacuole to the inner leaflet for degradation and choline recycling. Vmr1p, a vacuolar membrane protein, participates in the export of numerous growth inhibitors from the cell, such as cycloheximide, 2,4-dinitrophenole, cadmium and other toxic metals. Nft1p is not well-characterized, but it is proposed to be regulate Ycf1p, which is involved in heavy metal detoxification.
Pssm-ID: 350048 [Multi-domain] Cd Length: 297 Bit Score: 302.08 E-value: 8.16e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 992 VATLVLNFVFQAFQIGSNLWLTQWANDQNVANDTGLRDM----YLGVYGAFGFGQVATNFFSSLAISLGCLKCSQLLHQT 1067
Cdd:cd18604 2 ALLLLLFVLSQLLSVGQSWWLGIWASAYETSSALPPSEVsvlyYLGIYALISLLSVLLGTLRYLLFFFGSLRASRKLHER 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1068 LLYYNLRWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIVVISLSTPIFLAVIVPIAFLYYFAQR 1147
Cdd:cd18604 82 LLHSVLRAPLRWLDTTPVGRILNRFSKDIETIDSELADSLSSLLESTLSLLVILIAIVVVSPAFLLPAVVLAALYVYIGR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1148 FYVATSRQLMRLESVSRSPIYSHFSETVTGASTIRAYNVGDRFIEESDAKVDKNQVCKYPSVIANRWLAIRLEMVGNLII 1227
Cdd:cd18604 162 LYLRASRELKRLESVARSPILSHFGETLAGLVTIRAFGAEERFIEEMLRRIDRYSRAFRYLWNLNRWLSVRIDLLGALFS 241
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 939619619 1228 LFASLFAVLGGQTNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERIKEY 1282
Cdd:cd18604 242 FATAALLVYGPGIDAGLAGFSLSFALGFSSAILWLVRSYNELELDMNSVERIQEY 296
|
|
| ABC_6TM_MRP7_D1_like |
cd18598 |
Six-transmembrane helical domain 1 (TMD1) of multidrug resistance-associated protein 7, and ... |
335-625 |
3.06e-91 |
|
Six-transmembrane helical domain 1 (TMD1) of multidrug resistance-associated protein 7, and similar proteins; This group represents the six-transmembrane domain 1 (TMD1) of multidrug resistance-associated protein 7 (MRP7), which belongs to the subfamily C of the ATP-binding cassette (ABC) transporter superfamily. The MRP subfamily (ABCC subfamily) is composed of 13 members, of which MRP1 to MRP9 are the major transporters that cause multidrug resistance in tumor cells by pumping anticancer drugs out of the cell. These nine MRP members function as ATP-dependent exporters for endogenous substances and xenobiotics. MRP family can be divided into two groups, depending on their structural architecture. MRP4, MRP5, MRP8, and MRP9 (ABCC4, 5, 11 and 12, respectively) have a typical ABC transporter structure and each composed of two transmembrane domains (TMD1 and TMD2) and two nucleotide domains (NBD1 and NBD2). On the other hand, MRP1, 2, 3, 6 and 7 (ABCC1, 2, 3, 6 and 7, respectively) have an additional N-terminal five transmembrane segments in a single domain (TMD0) connected to the core (TMD-NBD) by a cytoplasmic linker (L0).
Pssm-ID: 350042 [Multi-domain] Cd Length: 288 Bit Score: 297.54 E-value: 3.06e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 335 FGALMKLFTDTLTFAQPQVLSLIISFVEAQDaEPEWKGILYAVLLFVLAAAQTFILGQYFHRMFIVGLRIRTALINAIYR 414
Cdd:cd18598 1 PLGLLKLLADVLGFAGPLLLNKLVEFLEDSS-EPLSDGYLYALGLVLSSLLGALLSSHYNFQMNKVSLKVRAALVTAVYR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 415 KALRISNSTKKESTVGEIVNLMAVDAQRFMELTTYLNMIWSAPLQIGLALYFLWQQLGPSVLAGLAVMIILIPVNGVIAS 494
Cdd:cd18598 80 KALRVRSSSLSKFSTGEIVNLMSTDADRIVNFCPSFHDLWSLPLQIIVALYLLYQQVGVAFLAGLVFALVLIPINKWIAK 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 495 RIKTYQIRQMKYKDERVKLMNEVLSGIKVLKLYAWEPSFEKQVLDIRDKEIATLRSTAYLNAGTSFLWSCAPFLVSLVTF 574
Cdd:cd18598 160 RIGALSEKMMKHKDARVKLMTEILSGIRVIKLLAWERIFKQKIEELRAKELKALKGRKYLDALCVYFWATTPVLISILTF 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 939619619 575 ATYVLIdeNNVLDATKTFVSLSLFNILRFPLTMLPMLITNLVQTQVSVNRI 625
Cdd:cd18598 240 ATYVLM--GNTLTAAKVFTSLALFNMLIGPLNAFPWVLNGLVEAWVSLKRL 288
|
|
| ABC_6TM_YOR1_D1_like |
cd18597 |
Six-transmembrane helical domain 1 (TMD1) of the yeast Yor1p and similar proteins; ABCC ... |
335-625 |
1.96e-89 |
|
Six-transmembrane helical domain 1 (TMD1) of the yeast Yor1p and similar proteins; ABCC subfamily; This group includes the six-transmembrane domain 1 (TMD1) of the yeast Yor1p, an oligomycin resistance ABC transporter, and similar proteins. Members of this group belong to the MRP (multidrug resistance-associated protein) subfamily (ABCC). In addition to Yor1p, yeast ABCC (also termed MRP/CFTR) subfamily also comprises five other members (Ycf1p, Bpt1p, Ybt1p/Bat1p, Nft1p, and Vmr1p), which are not included in this group. Yor1p is a plasma membrane ATP-binding transporter that mediates export of many different organic anions including oligomycin. While Yor1p has been shown to localize to the plasma membrane, the other 4 members (Ycf1p, Bpt1p, Ybt1p/Bat1p, Nft1p and Vmr1p) have been shown to localize to the vacuolar membrane.
Pssm-ID: 350041 [Multi-domain] Cd Length: 293 Bit Score: 292.43 E-value: 1.96e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 335 FGALMKLFTDTLTFAQPQVLSLIISFVE---AQDAEPE-WKGILYAVLLFVLAAAQTFILGQYFHRMFIVGLRIRTALIN 410
Cdd:cd18597 1 LAGLLKLLADVLQVLSPLLLKYLINFVEdayLGGPPPSiGYGIGYAIGLFLLQLLSSLLLNHFFYRSMLTGAQVRAALTK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 411 AIYRKALRISNSTKKESTVGEIVNLMAVDAQRFMELTTYLNMIWSAPLQIGLALYFLWQQLGPSVLAGLAVMIILIPVNG 490
Cdd:cd18597 81 AIYRKSLRLSGKSRHEFPNGKITNLMSTDLSRIDFALGFFHFLWTAPIQIIIAIALLIVNLGPSALVGIGVLILSIPLQG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 491 VIASRIKTYQIRQMKYKDERVKLMNEVLSGIKVLKLYAWEPSFEKQVLDIRDKEIATLRSTAYLNAGTSFLWSCAPFLVS 570
Cdd:cd18597 161 FLMKKLFKLRKKANKITDKRVKLTQEILQGIRVIKFYAWEDAFLERITEIRKKELKYVRKLQILRSILTAVAFSLPVLAS 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 939619619 571 LVTFATYVLIdeNNVLDATKTFVSLSLFNILRFPLTMLPMLITNLVQTQVSVNRI 625
Cdd:cd18597 241 MLSFITYYAT--GHTLDPANIFSSLALFNVLRMPLMFLPLALSSLADALVALKRI 293
|
|
| ABC_6TM_SUR1_D2_like |
cd18602 |
Six-transmembrane helical domain 2 (TMD2) of the sulphonylurea receptors SUR1/2; This group ... |
988-1282 |
2.09e-87 |
|
Six-transmembrane helical domain 2 (TMD2) of the sulphonylurea receptors SUR1/2; This group represents the six-transmembrane domain 2 (TMD2) of the sulphonylurea receptors SUR1/2 (ABCC8), which function as a modulator of ATP-sensitive potassium channels and insulin release, and belong to the ABCC subfamily. The ATP-sensitive (K-ATP) channel is an octameric complex of four pore-forming Kir6.2 subunits and four regulatory SUR subunits. Thus, in contrast to other ABC transporters, the SUR serves as the regulatory subunit of an ion channel. Mutations and deficiencies in the SUR proteins have been observed in patients with hyperinsulinemic hypoglycemia of infancy, an autosomal recessive disorder of unregulated and high insulin secretion. Mutations have also been associated with non-insulin-dependent diabetes mellitus type 2, an autosomal dominant disease of defective insulin secretion.
Pssm-ID: 350046 [Multi-domain] Cd Length: 307 Bit Score: 287.19 E-value: 2.09e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 988 IFLSVATLVLNfvfQAFQIGSNLWLTQWAN-------DQNVANDTGLRDM----YLGVYGAFGFGQVATNFFSSLAISLG 1056
Cdd:cd18602 1 VALVLALALLK---QGLRVATDFWLADWTEanhdvasVVFNITSSSLEDDevsyYISVYAGLSLGAVILSLVTNLAGELA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1057 CLKCSQLLHQTLLYYNLRWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIVVISLSTPIFLAVIV 1136
Cdd:cd18602 78 GLRAARRLHDRMLRNIVRAPMRFFDTTPIGRILNRFSSDTNVIDQKLPTTLERLLRFLLLCLSAIIVNAIVTPYFLIALI 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1137 PIAFLYYFAQRFYVATSRQLMRLESVSRSPIYSHFSETVTGASTIRAYNVGDRFIEESDAKVDKNQVCKYPSVIANRWLA 1216
Cdd:cd18602 158 PIIIVYYFLQKFYRASSRELQRLDNITKSPVFSHFSETLGGLTTIRAFRQQARFTQQMLELIDRNNTAFLFLNTANRWLG 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 939619619 1217 IRLEMVGNLIIL---FASLFAVLGGQTNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERIKEY 1282
Cdd:cd18602 238 IRLDYLGAVIVFlaaLSSLTAALAGYISPSLVGLAITYALLVPIYLNWVVRNLADVEMQMNSVERVLEY 306
|
|
| ABC_6TM_MRP7_D2_like |
cd18605 |
Six-transmembrane helical domain 2 (TMD2) of multidrug resistance-associated protein 7, and ... |
991-1282 |
1.35e-83 |
|
Six-transmembrane helical domain 2 (TMD2) of multidrug resistance-associated protein 7, and similar proteins; This group represents the six-transmembrane domain 2 (TMD2) of multidrug resistance-associated protein 7 (MRP7), which belongs to the subfamily C of the ATP-binding cassette (ABC) transporter superfamily. The MRP subfamily (ABCC subfamily) is composed of 13 members, of which MRP1 to MRP9 are the major transporters that cause multidrug resistance in tumor cells by pumping anticancer drugs out of the cell. These nine MRP members function as ATP-dependent exporters for endogenous substances and xenobiotics. MRP family can be divided into two groups, depending on their structural architecture. MRP4, MRP5, MRP8, and MRP9 (ABCC4, 5, 11 and 12, respectively) have a typical ABC transporter structure and each composed of two transmembrane domains (TMD1 and TMD2) and two nucleotide domains (NBD1 and NBD2). On the other hand, MRP1, 2, 3, 6 and 7 (ABCC1, 2, 3, 6 and 7, respectively) have an additional N-terminal five transmembrane segments in a single domain (TMD0) connected to the core (TMD-NBD) by a cytoplasmic linker (L0).
Pssm-ID: 350049 [Multi-domain] Cd Length: 300 Bit Score: 276.33 E-value: 1.35e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 991 SVATLVLNFVFQAFQIGSNLWLTQWANDQNVANDTGLRD---MYLGVYGAFGFGQVATNFFSSLAISLGCLKCSQLLHQT 1067
Cdd:cd18605 1 LILILLSLILMQASRNLIDFWLSYWVSHSNNSFFNFINDsfnFFLTVYGFLAGLNSLFTLLRAFLFAYGGLRAARRLHNK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1068 LLYYNLRWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIVVISLSTPIFLAVIVPIAFLYYFAQR 1147
Cdd:cd18605 81 LLSSILFAKMSFFDKTPVGRILNRFSSDVYTIDDSLPFILNILLAQLFGLLGYLVVICYQLPWLLLLLLPLAFIYYRIQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1148 FYVATSRQLMRLESVSRSPIYSHFSETVTGASTIRAYNVGDRFIEESDAKVDKNQVCKYPSVIANRWLAIRLEMVGNLII 1227
Cdd:cd18605 161 YYRATSRELKRLNSVNLSPLYTHFSETLKGLVTIRAFRKQERFLKEYLEKLENNQRAQLASQAASQWLSIRLQLLGVLIV 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 939619619 1228 LFASLFAVL----GGQTNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERIKEY 1282
Cdd:cd18605 241 TFVALTAVVqhffGLSIDAGLIGLALSYALPITGLLSGLLNSFTETEKEMVSVERVRQY 299
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
1303-1487 |
1.13e-78 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 258.50 E-value: 1.13e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1303 WPQEGRVEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHML 1382
Cdd:cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1383 RSRLTIIPQDPVLFSGSLRINLDPFEIKTDDEIWKALelshlksfvkslaaglnhEIAEGGENLSVGQRQLVCLARALLR 1462
Cdd:cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGAL------------------RVSEGGLNLSQGQRQLLCLARALLK 142
|
170 180
....*....|....*....|....*..
gi 939619619 1463 KTKVLVLDEATAAVDLETDDLIQ--IR 1487
Cdd:cd03369 143 RPRVLVLDEATASIDYATDALIQktIR 169
|
|
| ABC_6TM_MRP5_8_9_D2 |
cd18599 |
Six-transmembrane helical domain 2 (TMD2) of multidrug resistance-associated proteins (MRPs) 5, ... |
987-1282 |
2.35e-76 |
|
Six-transmembrane helical domain 2 (TMD2) of multidrug resistance-associated proteins (MRPs) 5, 8, and 9; This group represents the six-transmembrane domain 2 (TMD2) of multidrug resistance-associated proteins (MRPs) 5, 8, and 9, all of which are belonging to the subfamily C of the ATP-binding cassette (ABC) transporter superfamily. The MRP subfamily (ABCC subfamily) is composed of 13 members, of which MRP1 to MRP9 are the major transporters that cause multidrug resistance in tumor cells by pumping anticancer drugs out of the cell. These nine MRP members function as ATP-dependent exporters for endogenous substances and xenobiotics. MRP family can be divided into two groups, depending on their structural architecture. MRP4, MRP5, MRP8, and MRP9 (ABCC4, 5, 11 and 12, respectively) have a typical ABC transporter structure and each composed of two transmembrane domains (TMD1 and TMD2) and two nucleotide domains (NBD1 and NBD2). On the other hand, MRP1, 2, 3, 6 and 7 (ABCC1, 2, 3, 6 and 7, respectively) have an additional N-terminal five transmembrane segments in a single domain (TMD0) connected to the core (TMD-NBD) by a cytoplasmic linker (L0).
Pssm-ID: 350043 [Multi-domain] Cd Length: 313 Bit Score: 255.95 E-value: 2.35e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 987 GIFLSVATLVLNFVFQAFQIGSNLWLTQWAND------QNVANDTGLR---------DMYLGVYGAFGFGQVATNFFSSL 1051
Cdd:cd18599 1 GYVVFLFVLLLFILSVGSTVFSDWWLSYWLKQgsgnttNNVDNSTVDSgnisdnpdlNFYQLVYGGSILVILLLSLIRGF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1052 AISLGCLKCSQLLHQTLLYYNLRWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIVVISLSTPIF 1131
Cdd:cd18599 81 VFVKVTLRASSRLHNKLFQKILRSPMSFFDTTPTGRILNRFSKDLDEVDVRLPFTLENFLQNVLLVVFSLIIIAIVFPWF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1132 LAVIVPIAFLYYFAQRFYVATSRQLMRLESVSRSPIYSHFSETVTGASTIRAYNVGDRFIEESDAKVDKNQVCKYPSVIA 1211
Cdd:cd18599 161 LIALIPLAIIFVFLSKIFRRAIRELKRLENISRSPLFSHLTATIQGLSTIHAFNKEKEFLSKFKKLLDQNSSAFFLFNCA 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 939619619 1212 NRWLAIRLEMVGNLIILFASLFAVLG-GQTNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERIKEY 1282
Cdd:cd18599 241 MRWLAVRLDILAVLITLITALLVVLLkGSISPAFAGLALSYALQLSGLFQFTVRLASETEARFTSVERILEY 312
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
1073-1492 |
8.75e-76 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 267.47 E-value: 8.75e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1073 LRWPMELFDTTPLGRIVNRFSkDIDTIDNVLPFNIRVVIGQAYMVLATIVVISLS----TPIFLAVIVPIAFLYYFAQRF 1148
Cdd:COG2274 240 LRLPLSFFESRSVGDLASRFR-DVESIREFLTGSLLTALLDLLFVLIFLIVLFFYspplALVVLLLIPLYVLLGLLFQPR 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1149 YVATSRQLMRLESVsrspIYSHFSETVTGASTIRAYNVGDRFIEESDAK----VDKNQVCKYPSVIANRWLAIrLEMVGN 1224
Cdd:COG2274 319 LRRLSREESEASAK----RQSLLVETLRGIETIKALGAESRFRRRWENLlakyLNARFKLRRLSNLLSTLSGL-LQQLAT 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1225 LIILFASLFAVLGGQTNPG-LVGlSVSYALQVTQTLNWLVRMSSDIETNIVSVERIKEYGETKQEAPweleQDKNKPKNW 1303
Cdd:COG2274 394 VALLWLGAYLVIDGQLTLGqLIA-FNILSGRFLAPVAQLIGLLQRFQDAKIALERLDDILDLPPERE----EGRSKLSLP 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1304 PQEGRVEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLR 1383
Cdd:COG2274 469 RLKGDIELENVSFRYPGDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASLR 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1384 SRLTIIPQDPVLFSGSLRINL---DPfEIkTDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARAL 1460
Cdd:COG2274 549 RQIGVVLQDVFLFSGTIRENItlgDP-DA-TDEEIIEAARLAGLHDFIEALPMGYDTVVGEGGSNLSGGQRQRLAIARAL 626
|
410 420 430
....*....|....*....|....*....|....
gi 939619619 1461 LRKTKVLVLDEATAAVDLETDDLIQ--IRHFCHP 1492
Cdd:COG2274 627 LRNPRILILDEATSALDAETEAIILenLRRLLKG 660
|
|
| ABC_6TM_CFTR_D1 |
cd18594 |
Six-transmembrane helical domain 1 of Cystic Fibrosis Transmembrane Conductance Regulator; ... |
331-626 |
1.89e-75 |
|
Six-transmembrane helical domain 1 of Cystic Fibrosis Transmembrane Conductance Regulator; This group represents the six-transmembrane domain 1 (TMD1) of the cystic fibrosis transmembrane conductance regulator (CFTR, ABCC7), which belongs to the ABCC subfamily. CFTR functions as a chloride channel, in contrast to other ABC transporters, and controls ion and water secretion and absorption in epithelial tissues. ABC proteins are formed from two homologous halves each containing a transmembrane domain (TMD) and a cytosolic nucleotide binding domain (NBD). In CFTR, these two TMD-NBD halves are linked by the unique regulatory (R) domain, which is not present in other ABC transporters. The ion channel only opens when its R-domain is phosphorylated by cyclic AMP-dependent protein kinase (PKA) and ATP is bound at the NBDs. Mutations in CFTR cause cystic fibrosis, the most common lethal genetic disorder in populations of Northern European descent.
Pssm-ID: 350038 [Multi-domain] Cd Length: 291 Bit Score: 252.55 E-value: 1.89e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 331 GVFLFgalmklFTDTLTFAQPQVLSLIISFVEAQDAEPEWKGILYAVLLFVLAAAQTFILGQYFHRMFIVGLRIRTALIN 410
Cdd:cd18594 3 GILLF------LEESLKIVQPLLLGRLVAYFVPDSTVTKTEAYLYALGLSLCAFLRVLLHHPYFFGLHRYGMQLRIALSS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 411 AIYRKALRISNSTKKESTVGEIVNLMAVDAQRFMELTTYLNMIWSAPLQIGLALYFLWQQLGPSVLAGLAVMIILIPVNG 490
Cdd:cd18594 77 LIYKKTLKLSSSALSKITTGHIVNLLSNDVQKFDEVLVYLHFLWIAPLQVIVLTGLLWREIGPSSLAGLGVLLLLLPLQA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 491 VIASRIKTYQIRQMKYKDERVKLMNEVLSGIKVLKLYAWEPSFEKQVLDIRDKEIATLRSTAYLNA-GTSFLWSCaPFLV 569
Cdd:cd18594 157 YLGKLFAKYRRKTAGLTDERVKIMNEIISGMRVIKMYTWEESFAKLIENIRKKELKLIRKAAYIRAfNMAFFFFS-PTLV 235
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 939619619 570 SLVTFATYVLIdeNNVLDATKTFVSLSLFNILRFPLTM-LPMLITNLVQTQVSVNRIN 626
Cdd:cd18594 236 SFATFVPYVLT--GNTLTARKVFTVISLLNALRMTITRfFPESIQTLSESRVSLKRIQ 291
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
324-868 |
5.65e-74 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 258.56 E-value: 5.65e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 324 PIYKSFGGVFLFGALMKLFTDTLTFAQPQVLSLII-SFVEAQDAEPEWKGILYAVLLFVLAAAQTFILGQYFHRmfiVGL 402
Cdd:COG1132 14 RYLRPYRGLLILALLLLLLSALLELLLPLLLGRIIdALLAGGDLSALLLLLLLLLGLALLRALLSYLQRYLLAR---LAQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 403 RIRTALINAIYRKALRISNSTKKESTVGEIVNLMAVDAQRFME-LTTYLNMIWSAPLQIGLALYFLWQ---QLGpsvLAG 478
Cdd:COG1132 91 RVVADLRRDLFEHLLRLPLSFFDRRRTGDLLSRLTNDVDAVEQfLAHGLPQLVRSVVTLIGALVVLFVidwRLA---LIV 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 479 LAVMIILIPVNGVIASRIKTYQIRQMKYKDERVKLMNEVLSGIKVLKLYAWEPS----FEKQVLDIRDKEIATLRSTAYL 554
Cdd:COG1132 168 LLVLPLLLLVLRLFGRRLRKLFRRVQEALAELNGRLQESLSGIRVVKAFGREERelerFREANEELRRANLRAARLSALF 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 555 NAGTSFLWSCAPFLVsLVTFATYVLideNNVLDATKTFVSLSLFNILRFPLTMLPMLITNLVQTQVSVNRINKFLNSEEl 634
Cdd:COG1132 248 FPLMELLGNLGLALV-LLVGGLLVL---SGSLTVGDLVAFILYLLRLFGPLRQLANVLNQLQRALASAERIFELLDEPP- 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 635 dpnsVLHDSSKPHPMSIENGE-------FSW-GDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEME------K 700
Cdd:COG1132 323 ----EIPDPPGAVPLPPVRGEiefenvsFSYpGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDptsgriL 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 701 LAGV-VNTV------GKLAYVPQQAWIQNATVRDNILFGQ-TYDRKRynkVIDACAL-RAD--IDILSAGDLTEIGEKGI 769
Cdd:COG1132 399 IDGVdIRDLtleslrRQIGVVPQDTFLFSGTIRENIRYGRpDATDEE---VEEAAKAaQAHefIEALPDGYDTVVGERGV 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 770 NLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEEVigpKGILARKSRVLVTHGVTFLPQVDSIYVIKMGEI 849
Cdd:COG1132 476 NLSGGQRQRIAIARALLKDPPILILDEATSALDTETEALIQEAL---ERLMKGRTTIVIAHRLSTIRNADRILVLDDGRI 552
|
570
....*....|....*....
gi 939619619 850 SESGTFDQLVKNKGAFADF 868
Cdd:COG1132 553 VEQGTHEELLARGGLYARL 571
|
|
| ABC_6TM_SUR1_D1_like |
cd18591 |
Six-transmembrane helical domain 1 (TMD1) of the sulphonylurea receptors SUR1/2; This group ... |
335-625 |
7.94e-74 |
|
Six-transmembrane helical domain 1 (TMD1) of the sulphonylurea receptors SUR1/2; This group represents the six-transmembrane domain 1 (TMD1) of the sulphonylurea receptors SUR1/2 (ABCC8), which function as a modulator of ATP-sensitive potassium channels and insulin release, and they belong to the ABCC subfamily. The ATP-sensitive (K-ATP) channel is an octameric complex of four pore-forming Kir6.2 subunits and four regulatory SUR subunits. Thus, in contrast to other ABC transporters, the SUR serves as the regulatory subunit of an ion channel. Mutations and deficiencies in the SUR proteins have been observed in patients with hyperinsulinemic hypoglycemia of infancy, an autosomal recessive disorder of unregulated and high insulin secretion. Mutations have also been associated with non-insulin-dependent diabetes mellitus type 2, an autosomal dominant disease of defective insulin secretion.
Pssm-ID: 350035 [Multi-domain] Cd Length: 309 Bit Score: 248.69 E-value: 7.94e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 335 FGALMKLFTDTLTFAQPQVLSLIISFVE----AQDAEPEWKGILY-------------AVLLFVLAAAQTFILGQYFHRM 397
Cdd:cd18591 1 LGGILKLLGDLLGFVGPLCISGIVDYVEentySSSNSTDKLSVSYvtveeffsngyvlAVILFLALLLQATFSQASYHIV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 398 FIVGLRIRTALINAIYRKALRIS--NSTKKESTVGEIVNLMAVDAQRFMELTTYLNMIWSAPLQIGLALYFLWQQLGPSV 475
Cdd:cd18591 81 IREGIRLKTALQAMIYEKALRLSswNLSSGSMTIGQITNHMSEDANNIMFFFWLIHYLWAIPLKIIVGLILLYLKLGVSA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 476 LAGLAVMIILIPVNGVIASRIKTYQIRQMKYKDERVKLMNEVLSGIKVLKLYAWEPSFEKQVLDIRDKEIATLRSTAYLN 555
Cdd:cd18591 161 LIGAALILVMTPLQYLIARKLSKNQKSTLEYSDERLKKTNEMLQGIKLLKLYAWENIFLDKIQEARRKELKLLLKDAVYW 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 556 AGTSFLWSCAPFLVSLVTFATYVLIdENNVLDATKTFVSLSLFNILRFPLTMLPMLITNLVQTQVSVNRI 625
Cdd:cd18591 241 SLMTFLTQASPILVTLVTFGLYPYL-EGEPLTAAKAFSSLALFNQLTVPLFIFPVVIPILINAVVSTRRL 309
|
|
| ABC_6TM_MRP4_D2_like |
cd18601 |
Six-transmembrane helical domain 2 (TMD2) of multidrug resistance-associated protein 4 (MRP4) ... |
987-1283 |
6.62e-69 |
|
Six-transmembrane helical domain 2 (TMD2) of multidrug resistance-associated protein 4 (MRP4) and similar proteins; This group represents the six-transmembrane domain 2 (TMD2) of multidrug resistance-associated protein 4 (MRP4), which belongs to the subfamily C of the ATP-binding cassette (ABC) transporter superfamily. The MRP subfamily (ABCC subfamily) is composed of 13 members, of which MRP1 to MRP9 are the major transporters that cause multidrug resistance in tumor cells by pumping anticancer drugs out of the cell. These nine MRP members function as ATP-dependent exporters for endogenous substances and xenobiotics. MRP family can be divided into two groups, depending on their structural architecture. MRP4, MRP5, MRP8, and MRP9 (ABCC4, 5, 11 and 12, respectively) have a typical ABC transporter structure and each composed of two transmembrane domains (TMD1 and TMD2) and two nucleotide domains (NBD1 and NBD2). On the other hand, MRP1, 2, 3, 6 and 7 (ABCC1, 2, 3, 6 and 7, respectively) have an additional N-terminal five transmembrane segments in a single domain (TMD0) connected to the core (TMD-NBD) by a cytoplasmic linker (L0).
Pssm-ID: 350045 [Multi-domain] Cd Length: 314 Bit Score: 234.52 E-value: 6.62e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 987 GIFLSVATLVLNFVFQAFQIGSNLWLTQWANDQNVANDTGL----------------RDMYLGVYGAFGFGQVATNFFSS 1050
Cdd:cd18601 1 GVFVFILLVLLNIAAQVLYVLSDWWLSYWANLEEKLNDTTDrvqgenstnvdiedldRDFNLGIYAGLTAATFVFGFLRS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1051 LAISLGCLKCSQLLHQTLLYYNLRWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIVVISLSTPI 1130
Cdd:cd18601 81 LLFFHVAVSASKNLHNKMFASVLRAPIRFFDTNPIGRILNRFSKDIGHLDDLLPLTFLDFLQLLLQVVGVVLLAVVVNPW 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1131 FLAVIVPIAFLYYFAQRFYVATSRQLMRLESVSRSPIYSHFSETVTGASTIRAYNVGDRFIEESDAKVDKNQVCKYPSVI 1210
Cdd:cd18601 161 VLIPVIPLVILFLFLRRYYLKTSREVKRIEGTTRSPVFSHLSSTLQGLWTIRAYSAQERFQEEFDAHQDLHSEAWFLFLA 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 939619619 1211 ANRWLAIRLEMVGNLIILFASLFAVLGGQT-NPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERIKEYG 1283
Cdd:cd18601 241 TSRWLAVRLDALCALFVTVVAFGSLFLAESlDAGLVGLSLSYALTLMGTFQWCVRQSAEVENLMTSVERVLEYS 314
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
1307-1485 |
6.04e-68 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 229.80 E-value: 6.04e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1307 GRVEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRL 1386
Cdd:cd03288 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1387 TIIPQDPVLFSGSLRINLDPFEIKTDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLRKTKV 1466
Cdd:cd03288 98 SIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSI 177
|
170
....*....|....*....
gi 939619619 1467 LVLDEATAAVDLETDDLIQ 1485
Cdd:cd03288 178 LIMDEATASIDMATENILQ 196
|
|
| ABC_6TM_MRP4_D1_like |
cd18593 |
Six-transmembrane helical domain 1 (TMD1) of multidrug resistance-associated protein 4 (MRP4) ... |
335-625 |
6.34e-67 |
|
Six-transmembrane helical domain 1 (TMD1) of multidrug resistance-associated protein 4 (MRP4) and similar proteins; This group represents the six-transmembrane domain 1 (TMD1) of multidrug resistance-associated protein 4 (MRP4), which belongs to the subfamily C of the ATP-binding cassette (ABC) transporter superfamily. The MRP subfamily (ABCC subfamily) is composed of 13 members, of which MRP1 to MRP9 are the major transporters that cause multidrug resistance in tumor cells by pumping anticancer drugs out of the cell. These nine MRP members function as ATP-dependent exporters for endogenous substances and xenobiotics. MRP family can be divided into two groups, depending on their structural architecture. MRP4, MRP5, MRP8, and MRP9 (ABCC4, 5, 11 and 12, respectively) have a typical ABC transporter structure and each composed of two transmembrane domains (TMD1 and TMD2) and two nucleotide domains (NBD1 and NBD2). On the other hand, MRP1, 2, 3, 6 and 7 (ABCC1, 2, 3, 6 and 7, respectively) have an additional N-terminal five transmembrane segments in a single domain (TMD0) connected to the core (TMD-NBD) by a cytoplasmic linker (L0).
Pssm-ID: 350037 [Multi-domain] Cd Length: 291 Bit Score: 228.26 E-value: 6.34e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 335 FGALMKLFTDTLTFAQPQVLSLIIS-FVEAQDAEPEWKGILYAVLLFVLAAAQTFILGQYFHRMFIVGLRIRTALINAIY 413
Cdd:cd18593 1 LLGIFLFLEEAIRVVQPIFLGKLIRyFEGNGSSISLTEAYLYAGGVSLCSFLFIITHHPYFFGMQRIGMRLRVACSSLIY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 414 RKALRISNSTKKESTVGEIVNLMAVDAQRFMELTTYLNMIWSAPLQIGLALYFLWQQLGPSVLAGLAVMIILIPVNGVIA 493
Cdd:cd18593 81 RKALRLSQAALGKTTVGQIVNLLSNDVNRFDQAVLFLHYLWVAPLQLIAVIYILWFEIGWSCLAGLAVLLILIPLQSFFG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 494 SRIKTYQIRQMKYKDERVKLMNEVLSGIKVLKLYAWEPSFEKQVLDIRDKEIATLRSTAYL---NAGTSFlwsCAPFLVS 570
Cdd:cd18593 161 KLFSKLRRKTAARTDKRIRIMNEIINGIRVIKMYAWEKAFAKLVDDLRRKEIKKVRRTSFLralNMGLFF---VSSKLIL 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 939619619 571 LVTFATYVLIDenNVLDATKTFVSLSLFNILRFPLTM-LPMLITNLVQTQVSVNRI 625
Cdd:cd18593 238 FLTFLAYILLG--NILTAERVFVTMALYNAVRLTMTLfFPFAIQFGSELSVSIRRI 291
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
651-847 |
2.43e-60 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 206.41 E-value: 2.43e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 651 IENGEFSWGDEI-TLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVV-----------------NTVGKLA 712
Cdd:cd03290 3 VTNGYFSWGSGLaTLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVhwsnknesepsfeatrsRNRYSVA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 713 YVPQQAWIQNATVRDNILFGQTYDRKRYNKVIDACALRADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLY 792
Cdd:cd03290 83 YAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIV 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 793 LLDDPLSAVDAHVGKHIFEEvigpkGILA-----RKSRVLVTHGVTFLPQVDSIYVIKMG 847
Cdd:cd03290 163 FLDDPFSALDIHLSDHLMQE-----GILKflqddKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
1086-1480 |
6.67e-60 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 216.94 E-value: 6.67e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1086 GRIVNRFSKDIDTIDNVLpfnIRVV---IGQAYMVLATIVVISLSTP----------IFLAVIVPIAFlyYFAQRfyvAT 1152
Cdd:COG4987 112 GDLLNRLVADVDALDNLY---LRVLlplLVALLVILAAVAFLAFFSPalalvlalglLLAGLLLPLLA--ARLGR---RA 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1153 SRQLMRLesvsRSPIYSHFSETVTGASTIRAYNVGDRFIEESDAkvdknqvckypsvIANRWLAI-----RLEMVGNLII 1227
Cdd:COG4987 184 GRRLAAA----RAALRARLTDLLQGAAELAAYGALDRALARLDA-------------AEARLAAAqrrlaRLSALAQALL 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1228 LFASLFAVLG-----------GQTNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERIKEYGETKQEAPweleqD 1296
Cdd:COG4987 247 QLAAGLAVVAvlwlaaplvaaGALSGPLLALLVLAALALFEALAPLPAAAQHLGRVRAAARRLNELLDAPPAVT-----E 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1297 KNKPKNWPQEGRVEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIAS 1376
Cdd:COG4987 322 PAEPAPAPGGPSLELEDVSFRYPGAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRD 401
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1377 MGLHMLRSRLTIIPQDPVLFSGSLRINL---DPfEIkTDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQL 1453
Cdd:COG4987 402 LDEDDLRRRIAVVPQRPHLFDTTLRENLrlaRP-DA-TDEELWAALERVGLGDWLAALPDGLDTWLGEGGRRLSGGERRR 479
|
410 420
....*....|....*....|....*..
gi 939619619 1454 VCLARALLRKTKVLVLDEATAAVDLET 1480
Cdd:COG4987 480 LALARALLRDAPILLLDEPTEGLDAAT 506
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
327-869 |
1.26e-58 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 216.62 E-value: 1.26e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 327 KSFGGVFLFGALMKLFTDTLTFAQPQVLSLIISFVEAQDAEPEWkgILYAVLLFVLAAAQTFIlgQYFhRMFIV---GLR 403
Cdd:COG2274 152 RRYRRLLLQVLLASLLINLLALATPLFTQVVIDRVLPNQDLSTL--WVLAIGLLLALLFEGLL--RLL-RSYLLlrlGQR 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 404 IRTALINAIYRKALRISNSTKKESTVGEIVN-LMAVDA-QRFmeLTTYLNMIWSAPLQIGLALYFLWQQLGPSVLAGLAV 481
Cdd:COG2274 227 IDLRLSSRFFRHLLRLPLSFFESRSVGDLASrFRDVESiREF--LTGSLLTALLDLLFVLIFLIVLFFYSPPLALVVLLL 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 482 MIILIPVNGVIASRIKTYQIRQMKYKDERVKLMNEVLSGIKVLKLYAWEPSF----EKQVLDIRDKEIATLRSTAYLNAG 557
Cdd:COG2274 305 IPLYVLLGLLFQPRLRRLSREESEASAKRQSLLVETLRGIETIKALGAESRFrrrwENLLAKYLNARFKLRRLSNLLSTL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 558 TSFLwscaPFLVS--LVTFATYVLIDENnvldatktfvsLSL-----FNIL--RF--PLTMLPMLITNLVQTQVSVNRIN 626
Cdd:COG2274 385 SGLL----QQLATvaLLWLGAYLVIDGQ-----------LTLgqliaFNILsgRFlaPVAQLIGLLQRFQDAKIALERLD 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 627 KFLNSE---ELDPNSVLHDSSKPHpMSIENGEFSWGD--EITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKL 701
Cdd:COG2274 450 DILDLPperEEGRSKLSLPRLKGD-IELENVSFRYPGdsPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPT 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 702 AGVV-------NTVGK------LAYVPQQAWIQNATVRDNILFG-QTYDRKRYNKVIDACALRADIDILSAGDLTEIGEK 767
Cdd:COG2274 529 SGRIlidgidlRQIDPaslrrqIGVVLQDVFLFSGTIRENITLGdPDATDEEIIEAARLAGLHDFIEALPMGYDTVVGEG 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 768 GINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEEVigpKGILARKSRVLVTHGVTFLPQVDSIYVIKMG 847
Cdd:COG2274 609 GSNLSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENL---RRLLKGRTVIIIAHRLSTIRLADRIIVLDKG 685
|
570 580
....*....|....*....|..
gi 939619619 848 EISESGTFDQLVKNKGAFADFI 869
Cdd:COG2274 686 RIVEDGTHEELLARKGLYAELV 707
|
|
| ABC_6TM_ABCC |
cd18559 |
Six-transmembrane helical domain of the ABC transporters, subfamily C; This group represents ... |
1004-1282 |
5.53e-58 |
|
Six-transmembrane helical domain of the ABC transporters, subfamily C; This group represents the 6-transmembrane (6TM) domain of the ABC transporters that belong to the ABCC subfamily, such as the sulphonylurea receptors SUR1/2 (ABCC8), the cystic fibrosis transmembrane conductance regulator (CFTR, ABCC7), Multidrug-Resistance associated Proteins (MRP1-9), VMR1 (vacuolar multidrug resistance protein 1), and YOR1 (yeast oligomycin resistance transporter protein). This TM subunit exhibits the type 3 ATP-binding cassette (ABC) exporter fold, which is characterized by 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The type 3 ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds, a various type of lipids and polypeptides.
Pssm-ID: 350003 [Multi-domain] Cd Length: 290 Bit Score: 202.44 E-value: 5.53e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1004 FQIGSNLWLTQW-ANDQNVANDTGLrdMYLGVYGAFGFGQVATNFFSSLAISLGCLKCSQLLHQTLLYYNLRWPMELFDT 1082
Cdd:cd18559 14 FSGPSNLWLLLWfDDPVNGPQEHGQ--VYLSVLGALAILQGITVFQYSMAVSIGGIFASRAVHLDLYHKALRSPISFFER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1083 TPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIVVISLSTPIFlAVIVPIAFLYYFAQRFYVATSRQLMRLESV 1162
Cdd:cd18559 92 TPSGELVNLFSKDLDRVDSMAPQVIKMWMGPLQNVIGLYLLILLAGPMA-AVGIPLGLLYVPVNRVYAASSRQLKRLESV 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1163 SRSPIYSHFSETVTGASTIRAYNVGDRFIEESDAKVDkNQVCKYPSVIANRWLAIRLEMVGNLIILFASLFAVLGGQTNP 1242
Cdd:cd18559 171 SKDPRYKLFNETLLGISVIKAFEWEEAFIRQVDAKRD-NELAYLPSIVYLRALAVRLWCVGPCIVLFASFFAYVSRHSLA 249
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 939619619 1243 GLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERIKEY 1282
Cdd:cd18559 250 GLVALKVFYSLALTTYLNWPLNMSPEVITNIVAAEVSLER 289
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
1307-1485 |
4.30e-56 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 194.37 E-value: 4.30e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1307 GRVEFQNFQVRYREGlDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRL 1386
Cdd:cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1387 TIIPQDPVLFSGSLRINLDPF-EIKTDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLRKTK 1465
Cdd:cd03254 80 GVVLQDTFLFSGTIMENIRLGrPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159
|
170 180
....*....|....*....|
gi 939619619 1466 VLVLDEATAAVDLETDDLIQ 1485
Cdd:cd03254 160 ILILDEATSNIDTETEKLIQ 179
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
1288-1485 |
3.81e-55 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 202.68 E-value: 3.81e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1288 EAPWELEQDKNKPKNWPQEGRVEFQNFQVRYREGlDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRI 1367
Cdd:COG4988 316 DAPEPAAPAGTAPLPAAGPPSIELEDVSFSYPGG-RPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSI 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1368 SIDGVDIASMGLHMLRSRLTIIPQDPVLFSGSLRINLDPFEIK-TDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENL 1446
Cdd:COG4988 395 LINGVDLSDLDPASWRRQIAWVPQNPYLFAGTIRENLRLGRPDaSDEELEAALEAAGLDEFVAALPDGLDTPLGEGGRGL 474
|
170 180 190
....*....|....*....|....*....|....*....
gi 939619619 1447 SVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQ 1485
Cdd:COG4988 475 SGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEIL 513
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
664-870 |
2.56e-54 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 191.61 E-value: 2.56e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKLAYVPQQAWIQNATVRDNILFGQTYDRKRYNKV 743
Cdd:cd03291 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSV 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 744 IDACALRADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEEVIGPkgILARK 823
Cdd:cd03291 133 VKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCK--LMANK 210
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 939619619 824 SRVLVTHGVTFLPQVDSIYVIKMGEISESGTFDQLVKNKGAFADFII 870
Cdd:cd03291 211 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKLM 257
|
|
| ABC_6TM_MRP5_8_9_D1 |
cd18592 |
Six-transmembrane helical domain 1 (TMD1) of multidrug resistance-associated proteins (MRPs) 5, ... |
335-625 |
3.31e-53 |
|
Six-transmembrane helical domain 1 (TMD1) of multidrug resistance-associated proteins (MRPs) 5, 8, and 9; This group represents the six-transmembrane domain 1 (TMD1) of multidrug resistance-associated proteins (MRPs) 5, 8, and 9, all of which are belonging to the subfamily C of the ATP-binding cassette (ABC) transporter superfamily. The MRP subfamily (ABCC subfamily) is composed of 13 members, of which MRP1 to MRP9 are the major transporters that cause multidrug resistance in tumor cells by pumping anticancer drugs out of the cell. These nine MRP members function as ATP-dependent exporters for endogenous substances and xenobiotics. MRP family can be divided into two groups, depending on their structural architecture. MRP4, MRP5, MRP8, and MRP9 (ABCC4, 5, 11 and 12, respectively) have a typical ABC transporter structure and each composed of two transmembrane domains (TMD1 and TMD2) and two nucleotide domains (NBD1 and NBD2). On the other hand, MRP1, 2, 3, 6 and 7 (ABCC1, 2, 3, 6 and 7, respectively) have an additional N-terminal five transmembrane segments in a single domain (TMD0) connected to the core (TMD-NBD) by a cytoplasmic linker (L0).
Pssm-ID: 350036 [Multi-domain] Cd Length: 287 Bit Score: 188.54 E-value: 3.31e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 335 FGALMKLFTDTLTFAQPQ-VLSLIISFVEAQDaEPEWKGILYAVLLFVLAAAQTFILGQYFHRMFIVGLRIRTALINAIY 413
Cdd:cd18592 1 FSILLLLISLIFGFIGPTiLIRKLLEYLEDSD-SSVWYGILLVLGLFLTELLRSLFFSLTWAISYRTGIRLRGAVLGLLY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 414 RKALRISNStkKESTVGEIVNLMAVDAQRFMELTTYLNMIWSAPLQIGLALYFLWQQLGPSVLAGLAVMIILIPVNGVIA 493
Cdd:cd18592 80 KKILRLRSL--GDKSVGELINIFSNDGQRLFDAAVFGPLVIGGPVVLILGIVYSTYLLGPWALLGMLVFLLFYPLQAFIA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 494 SRIKTYQIRQMKYKDERVKLMNEVLSGIKVLKLYAWEPSFEKQVLDIRDKEIATLRSTAYLNagtSFLWSCAPFLV---S 570
Cdd:cd18592 158 KLTGKFRRKAIVITDKRVRLMNEILNSIKLIKMYAWEKPFAKKIADIRKEERKILEKAGYLQ---SISISLAPIVPviaS 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 939619619 571 LVTFATYVLIDENnvLDATKTFVSLSLFNILRFPLTMLPMLITNLVQTQVSVNRI 625
Cdd:cd18592 235 VVTFLAHVALGND--LTAAQAFTVIAVFNSMRFSLRMLPYAVKALAEAKVALQRI 287
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
1045-1485 |
3.07e-50 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 188.39 E-value: 3.07e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1045 TNFFSSLAISLGCLKCSQLLHQTLLYYNLRWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIVVI 1124
Cdd:TIGR02203 70 CSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVL 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1125 ---SLSTPIFLAVIVP-IAFLY-YFAQRFyvatsRQLMRLESVSRSPIYSHFSETVTGASTIRAYNVGDRFIEESDAKVD 1199
Cdd:TIGR02203 150 lyySWQLTLIVVVMLPvLSILMrRVSKRL-----RRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSN 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1200 KNQVCKYPSVIANRWLAIRLEMVGNL---IILFASLFAVLGGQTNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSV 1276
Cdd:TIGR02203 225 RNRRLAMKMTSAGSISSPITQLIASLalaVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1277 ERIKEYGETKQEapweleQDKNKPKNWPQEGRVEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLAL 1356
Cdd:TIGR02203 305 ESLFTLLDSPPE------KDTGTRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLI 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1357 FRIIEAAGGRISIDGVDIASMGLHMLRSRLTIIPQDPVLFSGSLRINL---DPFEIkTDDEIWKALELSHLKSFVKSLAA 1433
Cdd:TIGR02203 379 PRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIaygRTEQA-DRAEIERALAAAYAQDFVDKLPL 457
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 939619619 1434 GLNHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQ 1485
Cdd:TIGR02203 458 GLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQ 509
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
1307-1480 |
1.65e-47 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 169.69 E-value: 1.65e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1307 GRVEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRL 1386
Cdd:cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1387 TIIPQDPVLFSGSLRINL---DPFeiKTDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLRK 1463
Cdd:cd03245 81 GYVPQDVTLFYGTLRDNItlgAPL--ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158
|
170
....*....|....*..
gi 939619619 1464 TKVLVLDEATAAVDLET 1480
Cdd:cd03245 159 PPILLLDEPTSAMDMNS 175
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
460-868 |
2.31e-47 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 179.58 E-value: 2.31e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 460 IGLALYFLWQQLGPSVLAGLAVMIILIPVNGVIASRIKTYQIRQMKYkDERVKLMnEVLSGIKVLKLYAWEPSFEKQVLD 539
Cdd:COG4987 146 AVAFLAFFSPALALVLALGLLLAGLLLPLLAARLGRRAGRRLAAARA-ALRARLT-DLLQGAAELAAYGALDRALARLDA 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 540 IRDKEIATLRSTAYLNAGTSFLWSCAPFLVSLVTFATYVLIDENNVLDATK----TFVSLSLFNILrfplTMLPMLITNL 615
Cdd:COG4987 224 AEARLAAAQRRLARLSALAQALLQLAAGLAVVAVLWLAAPLVAAGALSGPLlallVLAALALFEAL----APLPAAAQHL 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 616 VQTQVSVNRINKFLNSEeldPNSVLHDSSKPHP----MSIENGEFSW--GDEITLRNINIEVKKGSLVALVGTVGSGKSS 689
Cdd:COG4987 300 GRVRAAARRLNELLDAP---PAVTEPAEPAPAPggpsLELEDVSFRYpgAGRPVLDGLSLTLPPGERVAIVGPSGSGKST 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 690 VVQAFLGEMEKLAGVVnTVG--------------KLAYVPQQAWIQNATVRDNILFG--QTYDrkryNKVIDACA---LR 750
Cdd:COG4987 377 LLALLLRFLDPQSGSI-TLGgvdlrdldeddlrrRIAVVPQRPHLFDTTLRENLRLArpDATD----EELWAALErvgLG 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 751 ADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEEVigpKGILARKSRVLVTH 830
Cdd:COG4987 452 DWLAALPDGLDTWLGEGGRRLSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADL---LEALAGRTVLLITH 528
|
410 420 430
....*....|....*....|....*....|....*...
gi 939619619 831 GVTFLPQVDSIYVIKMGEISESGTFDQLVKNKGAFADF 868
Cdd:COG4987 529 RLAGLERMDRILVLEDGRIVEQGTHEELLAQNGRYRQL 566
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
1309-1485 |
2.61e-46 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 164.09 E-value: 2.61e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTI 1388
Cdd:cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1389 IPQDPVLFSGSLRINLdpfeiktddeiwkalelshlksfvkslaaglnheiaeggenLSVGQRQLVCLARALLRKTKVLV 1468
Cdd:cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119
|
170
....*....|....*..
gi 939619619 1469 LDEATAAVDLETDDLIQ 1485
Cdd:cd03228 120 LDEATSALDPETEALIL 136
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
1086-1482 |
1.85e-45 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 173.32 E-value: 1.85e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1086 GRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIVVISLSTPIFLAVIVPIAFLYYF-AQRFYVATSRQLMRLESVSR 1164
Cdd:TIGR02868 110 GDLLGRLGADVDALQDLYVRVIVPAGVALVVGAAAVAAIAVLSVPAALILAAGLLLAGFvAPLVSLRAARAAEQALARLR 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1165 SPIYSHFSETVTGASTIRAYNVGDRFIEESDAKVDKNQVCKYPSVIANRW------LAIRLEMVGNLIilfASLFAVLGG 1238
Cdd:TIGR02868 190 GELAAQLTDALDGAAELVASGALPAALAQVEEADRELTRAERRAAAATALgaaltlLAAGLAVLGALW---AGGPAVADG 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1239 QTNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERIKEYGETKQEAPW-ELEQDKNKPknwPQEGRVEFQNFQVR 1317
Cdd:TIGR02868 267 RLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIVEVLDAAGPVAEgSAPAAGAVG---LGKPTLELRDLSAG 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1318 YrEGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTIIPQDPVLFS 1397
Cdd:TIGR02868 344 Y-PGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFD 422
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1398 GSLRINL-----DpfeiKTDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEA 1472
Cdd:TIGR02868 423 TTVRENLrlarpD----ATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEP 498
|
410
....*....|
gi 939619619 1473 TAAVDLETDD 1482
Cdd:TIGR02868 499 TEHLDAETAD 508
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
333-863 |
7.13e-45 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 172.25 E-value: 7.13e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 333 FLFGALMKLFTDTLTFAQPQVLSLIIS--FVEAQDAEPEWKGILYAVLLFVLAAAQTFILGQYFHRMfivGLRIRTALIN 410
Cdd:COG4988 19 LALAVLLGLLSGLLIIAQAWLLASLLAglIIGGAPLSALLPLLGLLLAVLLLRALLAWLRERAAFRA---AARVKRRLRR 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 411 AIYRKALRIS-NSTKKESTvGEIVNLM--AVDAqrfME--LTTYLNMIWSA---PLQIGLALYFLwqqlgpSVLAG--LA 480
Cdd:COG4988 96 RLLEKLLALGpAWLRGKST-GELATLLteGVEA---LDgyFARYLPQLFLAalvPLLILVAVFPL------DWLSGliLL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 481 VMIILIPVnGVIASRIKTyQIRQMKYKDERVKLMN---EVLSGIKVLKLY----AWEPSFEKQVLDIRDKEIATLRSTay 553
Cdd:COG4988 166 VTAPLIPL-FMILVGKGA-AKASRRQWRALARLSGhflDRLRGLTTLKLFgrakAEAERIAEASEDFRKRTMKVLRVA-- 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 554 lnagtsflwscapFLVSLVT-FATYV------------LIDEnnvldatktfvSLSLFNILrFPLTMLPMLITNLvqTQV 620
Cdd:COG4988 242 -------------FLSSAVLeFFASLsialvavyigfrLLGG-----------SLTLFAAL-FVLLLAPEFFLPL--RDL 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 621 SVN------------RINKFLNSEELDPNSVLHDSSKPHPMSI--ENGEFSWGDEIT-LRNINIEVKKGSLVALVGTVGS 685
Cdd:COG4988 295 GSFyharangiaaaeKIFALLDAPEPAAPAGTAPLPAAGPPSIelEDVSFSYPGGRPaLDGLSLTIPPGERVALVGPSGA 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 686 GKSSVVQAFLGEMEKLAGVVnTVG--------------KLAYVPQQAWIQNATVRDNILFGQT-YDRKRYNKVIDACALR 750
Cdd:COG4988 375 GKSTLLNLLLGFLPPYSGSI-LINgvdlsdldpaswrrQIAWVPQNPYLFAGTIRENLRLGRPdASDEELEAALEAAGLD 453
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 751 ADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEEVigpKGILARKSRVLVTH 830
Cdd:COG4988 454 EFVAALPDGLDTPLGEGGRGLSGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQAL---RRLAKGRTVILITH 530
|
570 580 590
....*....|....*....|....*....|...
gi 939619619 831 GVTFLPQVDSIYVIKMGEISESGTFDQLVKNKG 863
Cdd:COG4988 531 RLALLAQADRILVLDDGRIVEQGTHEELLAKNG 563
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
1309-1485 |
1.34e-44 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 161.63 E-value: 1.34e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTI 1388
Cdd:cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1389 IPQDPVLFSGSLRINL---DPFEikTDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLRKTK 1465
Cdd:cd03251 81 VSQDVFLFNDTVAENIaygRPGA--TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158
|
170 180
....*....|....*....|
gi 939619619 1466 VLVLDEATAAVDLETDDLIQ 1485
Cdd:cd03251 159 ILILDEATSALDTESERLVQ 178
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
1073-1485 |
9.36e-44 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 171.44 E-value: 9.36e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1073 LRWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRV-------VIGQAYMVLATIVVISLSTPIFLAVIVPIAFLYyfa 1145
Cdd:TIGR00958 245 LRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVllrnlvmLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVF--- 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1146 QRFYVATSRQLMrlESVSRSPIYSHfsETVTGASTIRAY----NVGDRFIE--ESDAKVDKNQVCKYpsvIANRWLAIRL 1219
Cdd:TIGR00958 322 GKRYQLLSEELQ--EAVAKANQVAE--EALSGMRTVRSFaaeeGEASRFKEalEETLQLNKRKALAY---AGYLWTTSVL 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1220 EMVGNLIILFASLFAVLGGQTNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERIKEYGETKQEAPWELEQdknK 1299
Cdd:TIGR00958 395 GMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTL---A 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1300 PKNwpQEGRVEFQNFQVRYREGLDL-VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMG 1378
Cdd:TIGR00958 472 PLN--LEGLIEFQDVSFSYPNRPDVpVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYD 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1379 LHMLRSRLTIIPQDPVLFSGSLRINLD-PFEIKTDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLA 1457
Cdd:TIGR00958 550 HHYLHRQVALVGQEPVLFSGSVRENIAyGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIA 629
|
410 420
....*....|....*....|....*...
gi 939619619 1458 RALLRKTKVLVLDEATAAVDLETDDLIQ 1485
Cdd:TIGR00958 630 RALVRKPRVLILDEATSALDAECEQLLQ 657
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
1222-1485 |
5.13e-42 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 164.22 E-value: 5.13e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1222 VGNLIILFASLFAVLGGQTNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERIKEYGETKQEApweleQDKNKPK 1301
Cdd:COG5265 275 LGLTAMMLMAAQGVVAGTMTVGDFVLVNAYLIQLYIPLNFLGFVYREIRQALADMERMFDLLDQPPEV-----ADAPDAP 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1302 NWP-QEGRVEFQNFQVRY---REgldlVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASM 1377
Cdd:COG5265 350 PLVvGGGEVRFENVSFGYdpeRP----ILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDV 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1378 GLHMLRSRLTIIPQDPVLFSGSLRINldpfeIK------TDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQR 1451
Cdd:COG5265 426 TQASLRAAIGIVPQDTVLFNDTIAYN-----IAygrpdaSEEEVEAAARAAQIHDFIESLPDGYDTRVGERGLKLSGGEK 500
|
250 260 270
....*....|....*....|....*....|....
gi 939619619 1452 QLVCLARALLRKTKVLVLDEATAAVDLETDDLIQ 1485
Cdd:COG5265 501 QRVAIARTLLKNPPILIFDEATSALDSRTERAIQ 534
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
1307-1485 |
2.15e-41 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 153.86 E-value: 2.15e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1307 GRVEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGgRISIDGVDIASMGLHMLRSRL 1386
Cdd:cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEG-DIQIDGVSWNSVPLQKWRKAF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1387 TIIPQDPVLFSGSLRINLDPFEIKTDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLRKTKV 1466
Cdd:cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159
|
170
....*....|....*....
gi 939619619 1467 LVLDEATAAVDLETDDLIQ 1485
Cdd:cd03289 160 LLLDEPSAHLDPITYQVIR 178
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
1073-1485 |
3.39e-41 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 161.81 E-value: 3.39e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1073 LRWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIVVI-SL-------STPIFLAVIVpIAFLYyf 1144
Cdd:PRK10790 109 LRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMfSLdwrmalvAIMIFPAVLV-VMVIY-- 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1145 aQRFYVATSRQLmrlesvsRS---PIYSHFSETVTGASTIRAYNVGDRFIEesdaKVDKNQVCKYPSvianRWLAIRLE- 1220
Cdd:PRK10790 186 -QRYSTPIVRRV-------RAylaDINDGFNEVINGMSVIQQFRQQARFGE----RMGEASRSHYMA----RMQTLRLDg 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1221 -MVGNLIILFASL----FAVLGGQTNPGLVGLSVSYALqvtqtLNWLVRMS----------SDIETNIVSVERIKEYget 1285
Cdd:PRK10790 250 fLLRPLLSLFSALilcgLLMLFGFSASGTIEVGVLYAF-----ISYLGRLNeplielttqqSMLQQAVVAGERVFEL--- 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1286 kQEAPWELEQDKNKPKnwpQEGRVEFQNFQVRYREGlDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGG 1365
Cdd:PRK10790 322 -MDGPRQQYGNDDRPL---QSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEG 396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1366 RISIDGVDIASMGLHMLRSRLTIIPQDPVLFSGSLRINLDPFEIKTDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGEN 1445
Cdd:PRK10790 397 EIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNN 476
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 939619619 1446 LSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQ 1485
Cdd:PRK10790 477 LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQ 516
|
|
| ABC_membrane |
pfam00664 |
ABC transporter transmembrane region; This family represents a unit of six transmembrane ... |
333-605 |
1.19e-40 |
|
ABC transporter transmembrane region; This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions.
Pssm-ID: 459896 [Multi-domain] Cd Length: 274 Bit Score: 151.64 E-value: 1.19e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 333 FLFGALMKLFTDTLTFAQPQVLSLIISFVEAQDAEPEWKGILYAVLLFVLAAAQTFILGQYFHRMFIVGLRIRTALINAI 412
Cdd:pfam00664 1 LILAILLAILSGAISPAFPLVLGRILDVLLPDGDPETQALNVYSLALLLLGLAQFILSFLQSYLLNHTGERLSRRLRRKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 413 YRKALRISNSTKKESTVGEIVNLMAVDAQRFMELTTYLNMIWSAPLQIGLALYFLWQQLGPSV-LAGLAVMIILIPVNGV 491
Cdd:pfam00664 81 FKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGEKLGLLFQSLATIVGGIIVMFYYGWKLtLVLLAVLPLYILVSAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 492 IASRIKTYQIRQMKYKDERVKLMNEVLSGIKVLKLYAWEPSFEKQVLDIRDKEI-ATLRSTAYLNAGTSFLWSCAPFLVS 570
Cdd:pfam00664 161 FAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALkAGIKKAVANGLSFGITQFIGYLSYA 240
|
250 260 270
....*....|....*....|....*....|....*
gi 939619619 571 LVTFATYVLIDENNvLDATKTFVSLSLFNILRFPL 605
Cdd:pfam00664 241 LALWFGAYLVISGE-LSVGDLVAFLSLFAQLFGPL 274
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
1299-1484 |
1.97e-39 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 155.14 E-value: 1.97e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1299 KPKNWPQEGRVEFQNFQVRYrEGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMG 1378
Cdd:TIGR02857 312 APVTAAPASSLEFSGVSVAY-PGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADAD 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1379 LHMLRSRLTIIPQDPVLFSGSLRINL---DPFeiKTDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVC 1455
Cdd:TIGR02857 391 ADSWRDQIAWVPQHPFLFAGTIAENIrlaRPD--ASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLA 468
|
170 180
....*....|....*....|....*....
gi 939619619 1456 LARALLRKTKVLVLDEATAAVDLETDDLI 1484
Cdd:TIGR02857 469 LARAFLRDAPLLLLDEPTAHLDAETEAEV 497
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
1309-1485 |
2.48e-39 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 146.61 E-value: 2.48e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDlVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTI 1388
Cdd:cd03253 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1389 IPQDPVLFSGSLRINldpfeIK------TDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLR 1462
Cdd:cd03253 80 VPQDTVLFNDTIGYN-----IRygrpdaTDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK 154
|
170 180
....*....|....*....|...
gi 939619619 1463 KTKVLVLDEATAAVDLETDDLIQ 1485
Cdd:cd03253 155 NPPILLLDEATSALDTHTEREIQ 177
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
1309-1485 |
7.84e-39 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 145.37 E-value: 7.84e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLD-LVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLT 1387
Cdd:cd03249 1 IEFKNVSFRYPSRPDvPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1388 IIPQDPVLFSGSLRINldpfeIK------TDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALL 1461
Cdd:cd03249 81 LVSQEPVLFDGTIAEN-----IRygkpdaTDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALL 155
|
170 180
....*....|....*....|....
gi 939619619 1462 RKTKVLVLDEATAAVDLETDDLIQ 1485
Cdd:cd03249 156 RNPKILLLDEATSALDAESEKLVQ 179
|
|
| ABC_membrane |
pfam00664 |
ABC transporter transmembrane region; This family represents a unit of six transmembrane ... |
986-1259 |
3.26e-37 |
|
ABC transporter transmembrane region; This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions.
Pssm-ID: 459896 [Multi-domain] Cd Length: 274 Bit Score: 142.01 E-value: 3.26e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 986 VGIFLSVATLVLNFVFqafqigsNLWLTQWANDQNVANDTGLRDM--YLGVYGAFGFGQVATNFFSSLAISLGCLKCSQL 1063
Cdd:pfam00664 3 LAILLAILSGAISPAF-------PLVLGRILDVLLPDGDPETQALnvYSLALLLLGLAQFILSFLQSYLLNHTGERLSRR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1064 LHQTLLYYNLRWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIVVISLSTPIFLAVIVPIAFLYY 1143
Cdd:pfam00664 76 LRRKLFKKILRQPMSFFDTNSVGELLSRLTNDTSKIRDGLGEKLGLLFQSLATIVGGIIVMFYYGWKLTLVLLAVLPLYI 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1144 FAQRFYVATSRQLMRLESVSRSPIYSHFSETVTGASTIRAYNVGDRFIEESDAKVDKNQVCKYPSVIANRWLAIRLEMVG 1223
Cdd:pfam00664 156 LVSAVFAKILRKLSRKEQKAVAKASSVAEESLSGIRTVKAFGREEYELEKYDKALEEALKAGIKKAVANGLSFGITQFIG 235
|
250 260 270
....*....|....*....|....*....|....*....
gi 939619619 1224 NLIILFASLFA---VLGGQTNPGLVGLSVSYALQVTQTL 1259
Cdd:pfam00664 236 YLSYALALWFGaylVISGELSVGDLVAFLSLFAQLFGPL 274
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
1309-1485 |
6.62e-37 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 139.54 E-value: 6.62e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTI 1388
Cdd:cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1389 IPQDPVLFSGSLRINLDPFEIKTD-DEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLRKTKVL 1467
Cdd:cd03252 81 VLQENVLFNRSIRDNIALADPGMSmERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160
|
170
....*....|....*...
gi 939619619 1468 VLDEATAAVDLETDDLIQ 1485
Cdd:cd03252 161 IFDEATSALDYESEHAIM 178
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
1306-1492 |
1.23e-36 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 138.37 E-value: 1.23e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1306 EGRVEFQNFQVRYREGLD-LVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRS 1384
Cdd:cd03248 9 KGIVKFQNVTFAYPTRPDtLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1385 RLTIIPQDPVLFSGSLRINLD-PFEIKTDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLRK 1463
Cdd:cd03248 89 KVSLVGQEPVLFARSLQDNIAyGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168
|
170 180
....*....|....*....|....*....
gi 939619619 1464 TKVLVLDEATAAVDLETDDLIQIRHFCHP 1492
Cdd:cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWP 197
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
983-1484 |
1.44e-35 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 146.04 E-value: 1.44e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 983 IKSVGIFLSVATLVLNFVFQAF-----QIGSNLWLTQWAN---DQNVANDTGLrdMYLGVYGAFGFGQVATNFFSSLAIS 1054
Cdd:TIGR01193 145 LKFIPLITRQKKLIVNIVIAAIivtliSIAGSYYLQKIIDtyiPHKMMGTLGI--ISIGLIIAYIIQQILSYIQIFLLNV 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1055 LGclkcSQLLHQTLLYYN---LRWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIVVISLSTPIF 1131
Cdd:TIGR01193 223 LG----QRLSIDIILSYIkhlFELPMSFFSTRRTGEIVSRFTDASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLF 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1132 LAVIVPI---AFLYYFAQRFYVATSRQLMRLESVSRSPIYshfsETVTGASTIRAYNVGDrfieESDAKVDK------NQ 1202
Cdd:TIGR01193 299 LLSLLSIpvyAVIIILFKRTFNKLNHDAMQANAVLNSSII----EDLNGIETIKSLTSEA----ERYSKIDSefgdylNK 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1203 VCKYPSVIANRwLAIR--LEMVGNLIILFASLFAVLGGQTNpglVGLSVSYALQVTQTLNWL---VRMSSDIETNIVSVE 1277
Cdd:TIGR01193 371 SFKYQKADQGQ-QAIKavTKLILNVVILWTGAYLVMRGKLT---LGQLITFNALLSYFLTPLeniINLQPKLQAARVANN 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1278 RIKEYgetkQEAPWELEQDKNKPKNWPQEGRVEFQNFQVRYREGlDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALF 1357
Cdd:TIGR01193 447 RLNEV----YLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLV 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1358 RIIEAAGGRISIDGVDIASMGLHMLRSRLTIIPQDPVLFSGSLRINL--DPFEIKTDDEIWKALELSHLKSFVKSLAAGL 1435
Cdd:TIGR01193 522 GFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLllGAKENVSQDEIWAACEIAEIKDDIENMPLGY 601
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 939619619 1436 NHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLI 1484
Cdd:TIGR01193 602 QTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKI 650
|
|
| NHLM_micro_ABC2 |
TIGR03797 |
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family ... |
1213-1480 |
2.48e-34 |
|
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274789 [Multi-domain] Cd Length: 686 Bit Score: 142.02 E-value: 2.48e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1213 RWLAIRLEMVGNLIILF---------ASLFAVLGGQ-TNPGL-VGLSVSYALQVTQTLNWLVRMSSDIeTNIVSV----E 1277
Cdd:TIGR03797 348 RKLELSAQRIENLLTVFnavlpvltsAALFAAAISLlGGAGLsLGSFLAFNTAFGSFSGAVTQLSNTL-ISILAViplwE 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1278 RIKEYGETKQEApweleqDKNKPKNWPQEGRVEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLtlalF 1357
Cdd:TIGR03797 427 RAKPILEALPEV------DEAKTDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTL----L 496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1358 RII---EAAG-GRISIDGVDIASMGLHMLRSRLTIIPQDPVLFSGSLRINLDPFEIKTDDEIWKALELSHLKSFVKSLAA 1433
Cdd:TIGR03797 497 RLLlgfETPEsGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPM 576
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 939619619 1434 GLNHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLET 1480
Cdd:TIGR03797 577 GMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRT 623
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
1126-1485 |
4.15e-34 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 140.10 E-value: 4.15e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1126 LSTPIFLAVIVPIAFlyYFAQR----------FYVATSRQLMR-----LESVSR--SPIYSHFSETVTGASTIRAYNvgd 1188
Cdd:PRK13657 138 LATLVALVVLLPLAL--FMNWRlslvlvvlgiVYTLITTLVMRktkdgQAAVEEhyHDLFAHVSDAIGNVSVVQSYN--- 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1189 RFIEESDA---KVDKNQVCKYPSV-------IANRwLAIRLEMvgnLIILFASLFAVLGGQTNPGLVGLSVSYALQVTQT 1258
Cdd:PRK13657 213 RIEAETQAlrdIADNLLAAQMPVLswwalasVLNR-AASTITM---LAILVLGAALVQKGQLRVGEVVAFVGFATLLIGR 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1259 LNwlvRMSSDIETNIVSVERIKEYGETKQEAPweleqDKNKPKNWPQ----EGRVEFQNFQVRY---REGLDlvlrGVSF 1331
Cdd:PRK13657 289 LD---QVVAFINQVFMAAPKLEEFFEVEDAVP-----DVRDPPGAIDlgrvKGAVEFDDVSFSYdnsRQGVE----DVSF 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1332 NIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTIIPQDPVLFSGSLRINLD-PFEIK 1410
Cdd:PRK13657 357 EAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRvGRPDA 436
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 939619619 1411 TDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQ 1485
Cdd:PRK13657 437 TDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVK 511
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
660-871 |
5.27e-34 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 131.51 E-value: 5.27e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 660 DEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFL-------GEMEkLAGV-VNTV------GKLAYVPQQAWIQNATV 725
Cdd:cd03249 15 DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLErfydptsGEIL-LDGVdIRDLnlrwlrSQIGLVSQEPVLFDGTI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 726 RDNILFGqtyDRKRYNKVIDACALRADID--ILSAGDL--TEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAV 801
Cdd:cd03249 94 AENIRYG---KPDATDEEVEEAAKKANIHdfIMSLPDGydTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSAL 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 939619619 802 DAHVgkhifEEVIGPKGILARKSR--VLVTHGVTFLPQVDSIYVIKMGEISESGTFDQLVKNKGAFADFIIQ 871
Cdd:cd03249 171 DAES-----EKLVQEALDRAMKGRttIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVKA 237
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
331-844 |
1.14e-33 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 137.80 E-value: 1.14e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 331 GVFLFGALMKLFTDTLTFAQPQVLSLIISFVEAQdAEPeWKGILYAVLLFVLAAAQTFILGQYFHRM-FIVGLRIRTALI 409
Cdd:TIGR02857 3 RALALLALLGVLGALLIIAQAWLLARVVDGLISA-GEP-LAELLPALGALALVLLLRALLGWLQERAaARAAAAVKSQLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 410 NAIYRKALRISNSTKKESTVGEIVNLM--AVDAqrfME--LTTYLNMIWSA---PLQIGLALyfLWQqlgpSVLAGLAVM 482
Cdd:TIGR02857 81 ERLLEAVAALGPRWLQGRPSGELATLAleGVEA---LDgyFARYLPQLVLAvivPLAILAAV--FPQ----DWISGLILL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 483 II--LIPV-NGVIASRIKTYQIRQMKYKDERVKLMNEVLSGIKVLKLYAWEPSFEKQVLDI----RDKEIATLRstayln 555
Cdd:TIGR02857 152 LTapLIPIfMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIRRSseeyRERTMRVLR------ 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 556 agTSFLWSCA-PFLVSLVTFATYVLIDENnVLDATKTFVSlSLFNILRFPLTMLPmlITNL-------VQTQVSVNRINK 627
Cdd:TIGR02857 226 --IAFLSSAVlELFATLSVALVAVYIGFR-LLAGDLDLAT-GLFVLLLAPEFYLP--LRQLgaqyharADGVAAAEALFA 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 628 FLNSEELdPNSVLHDSSKPHPMSIE--NGEFSWGDE-ITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGV 704
Cdd:TIGR02857 300 VLDAAPR-PLAGKAPVTAAPASSLEfsGVSVAYPGRrPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGS 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 705 VNTVG-------------KLAYVPQQAWIQNATVRDNILFGQTY-DRKRYNKVIDACALRADIDILSAGDLTEIGEKGIN 770
Cdd:TIGR02857 379 IAVNGvpladadadswrdQIAWVPQHPFLFAGTIAENIRLARPDaSDAEIREALERAGLDEFVAALPQGLDTPIGEGGAG 458
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 939619619 771 LSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEEVigpKGILARKSRVLVTHGVTFLPQVDSIYVI 844
Cdd:TIGR02857 459 LSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEAL---RALAQGRTVLLVTHRLALAALADRIVVL 529
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
649-848 |
2.63e-33 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 127.11 E-value: 2.63e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 649 MSIENGEFSWGDEIT--LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVnTVG--------------KLA 712
Cdd:cd03228 1 IEFKNVSFSYPGRPKpvLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI-LIDgvdlrdldleslrkNIA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 713 YVPQQAWIQNATVRDNILfgqtydrkrynkvidacalradidilsagdlteigekginlSGGQKQRISLARAVYSDADLY 792
Cdd:cd03228 80 YVPQDPFLFSGTIRENIL-----------------------------------------SGGQRQRIAIARALLRDPPIL 118
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 939619619 793 LLDDPLSAVDAHVGKHIFEEVigpKGILARKSRVLVTHGVTFLPQVDSIYVIKMGE 848
Cdd:cd03228 119 ILDEATSALDPETEALILEAL---RALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
1326-1474 |
1.51e-32 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 123.91 E-value: 1.51e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1326 LRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTIIPQDPVLFSGS-----L 1400
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKEIGYVFQDPQLFPRLtvrenL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 939619619 1401 RINLDPFEIKT---DDEIWKALELSHLKSFVKSLaaglnheIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATA 1474
Cdd:pfam00005 81 RLGLLLKGLSKrekDARAEEALEKLGLGDLADRP-------VGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
625-868 |
1.93e-32 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 134.97 E-value: 1.93e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 625 INKFLNSEELDPNSVLHDSSKPHPMSIENGE---FSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEME-- 699
Cdd:PRK11174 324 LVTFLETPLAHPQQGEKELASNDPVTIEAEDleiLSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPyq 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 700 ---KLAGV-VNTVGKLAYVPQQAWI-QN-----ATVRDNILFGQ-TYDRKRYNKVIDACALRADIDILSAGDLTEIGEKG 768
Cdd:PRK11174 404 gslKINGIeLRELDPESWRKHLSWVgQNpqlphGTLRDNVLLGNpDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 769 INLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEEVigpKGILARKSRVLVTHGVTFLPQVDSIYVIKMGE 848
Cdd:PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL---NAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQ 560
|
250 260
....*....|....*....|
gi 939619619 849 ISESGTFDQLVKNKGAFADF 868
Cdd:PRK11174 561 IVQQGDYAELSQAGGLFATL 580
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
651-863 |
1.96e-32 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 126.57 E-value: 1.96e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 651 IENGEFSW-GDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG-------------KLAYVPQ 716
Cdd:cd03254 5 FENVNFSYdEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGidirdisrkslrsMIGVVLQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 717 QAWIQNATVRDNILFGQTYDRKryNKVIDAC-ALRAD--IDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYL 793
Cdd:cd03254 85 DTFLFSGTIMENIRLGRPNATD--EEVIEAAkEAGAHdfIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILI 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 794 LDDPLSAVDAHVGKHIFEEVigpKGILARKSRVLVTHGVTFLPQVDSIYVIKMGEISESGTFDQLVKNKG 863
Cdd:cd03254 163 LDEATSNIDTETEKLIQEAL---EKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
652-867 |
4.72e-32 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 125.81 E-value: 4.72e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 652 ENGEFSWGDE-ITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG-------------KLAYVPQQ 717
Cdd:cd03253 4 ENVTFAYDPGrPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGqdirevtldslrrAIGVVPQD 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 718 AWIQNATVRDNILFGqtydrkRYN----KVIDACaLRADID--ILSAGD--LTEIGEKGINLSGGQKQRISLARAVYSDA 789
Cdd:cd03253 84 TVLFNDTIGYNIRYG------RPDatdeEVIEAA-KAAQIHdkIMRFPDgyDTIVGERGLKLSGGEKQRVAIARAILKNP 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 939619619 790 DLYLLDDPLSAVDAHVGKHIFEEVigpKGILARKSRVLVTHGVTFLPQVDSIYVIKMGEISESGTFDQLVKNKGAFAD 867
Cdd:cd03253 157 PILLLDEATSALDTHTEREIQAAL---RDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAE 231
|
|
| ABC_6TM_CFTR_D2 |
cd18600 |
Six-transmembrane helical domain 2 of Cystic Fibrosis Transmembrane Conductance Regulator; ... |
979-1279 |
5.42e-32 |
|
Six-transmembrane helical domain 2 of Cystic Fibrosis Transmembrane Conductance Regulator; This group represents the six-transmembrane domain 2 (TMD2) of the ABC transporters that belong to the ABCC subfamily, such as the sulphonylurea receptors SUR1/2 (ABCC8), the cystic fibrosis transmembrane conductance regulator (CFTR, ABCC7), Multidrug-Resistance associated Proteins (MRP1-9), VMR1 (vacuolar multidrug resistance protein 1), and YOR1 (yeast oligomycin resistance transporter protein). This TM subunit exhibits the type 3 ATP-binding cassette (ABC) exporter fold, which is characterized by 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The type 3 ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds, a various type of lipids and polypeptides. All ABC transporters share a common architecture of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane by alternating between inward- and outward-facing conformations. By contrast, bacterial ABC exporters are typically assembled from dimers of TMD-NBD half-transporters. Thus, most bacterial ABC transporters are comprised of two identical TMDs and two identical NBDs.
Pssm-ID: 350044 [Multi-domain] Cd Length: 324 Bit Score: 128.38 E-value: 5.42e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 979 YKHYIKSVGIFLSVatLVLNFVFQAFQI---GSNLWLTQWANDQNVANDTGLRD-------------MYLGVYGAFGFGQ 1042
Cdd:cd18600 6 YLRYITSHKSLIFV--LILCLVIFAIEVaasLVGLWLLRSQADRVNTTRPESSSntyavivtftssyYVFYIYVGVADSL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1043 VATNFFSSLAISLGCLKCSQLLHQTLLYYNLRWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIV 1122
Cdd:cd18600 84 LAMGFFRGLPLVHTLITVSKTLHQKMLHAVLHAPMSTFNTMKAGRILNRFSKDTAILDDLLPLTIFDFIQLFLIVIGAIT 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1123 VISLSTPIFLAVIVPIAFLYYFAQRFYVATSRQLMRLESVSRSPIYSHFSETVTGASTIRAYNVGDRFIEESDAKVDKNQ 1202
Cdd:cd18600 164 VVSILQPYIFLATVPVIIAFIVLRAYFLRTSQQLKQLESEARSPIFAHLVTSLKGLWTLRAFGRQPYFETLFHKALNLHT 243
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 939619619 1203 VCKYPSVIANRWLAIRLEMVGNLIILFASLFAVLGGQTNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERI 1279
Cdd:cd18600 244 ANWFLYLSTLRWFQMRIEMIFVIFFTAVTFISIGTTGDGEGRVGIILTLAMNIMSTLQWAVNTSIDVDSLMRSVSRI 320
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
650-830 |
1.08e-31 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 123.80 E-value: 1.08e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK--------LAYVPQQA--- 718
Cdd:cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKplekerkrIGYVPQRRsid 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 719 WIQNATVRDNILFGQTYDR---KRYNKVIDACALRAdidiLSAGDLTEIGEKGI-NLSGGQKQRISLARAVYSDADLYLL 794
Cdd:cd03235 81 RDFPISVRDVVLMGLYGHKglfRRLSKADKAKVDEA----LERVGLSELADRQIgELSGGQQQRVLLARALVQDPDLLLL 156
|
170 180 190
....*....|....*....|....*....|....*...
gi 939619619 795 DDPLSAVDAHVGKHIFEEVIGpkgiLARKSR--VLVTH 830
Cdd:cd03235 157 DEPFAGVDPKTQEDIYELLRE----LRREGMtiLVVTH 190
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
1292-1485 |
1.31e-31 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 132.45 E-value: 1.31e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1292 ELEQDKNKPKNWPQEGRVEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDG 1371
Cdd:PRK11176 325 EQEKDEGKRVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1372 VDIASMGLHMLRSRLTIIPQDPVLFSGSLRINL--DPFEIKTDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVG 1449
Cdd:PRK11176 405 HDLRDYTLASLRNQVALVSQNVHLFNDTIANNIayARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484
|
170 180 190
....*....|....*....|....*....|....*.
gi 939619619 1450 QRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQ 1485
Cdd:PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQ 520
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
1329-1477 |
4.15e-30 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 127.65 E-value: 4.15e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1329 VSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIeAAGGRISIDGVDIASMGLHMLRSRLTIIPQDPVLFSGSLRINLDPFE 1408
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGN 447
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1409 IK-TDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVD 1477
Cdd:PRK11174 448 PDaSDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLD 517
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
650-867 |
1.79e-29 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 118.10 E-value: 1.79e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSWGDEIT--LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG-------------KLAYV 714
Cdd:cd03251 2 EFKNVTFRYPGDGPpvLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGhdvrdytlaslrrQIGLV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 715 PQQAWIQNATVRDNILFGQT-YDRKRYNKVIDACALRADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYL 793
Cdd:cd03251 82 SQDVFLFNDTVAENIAYGRPgATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILI 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 939619619 794 LDDPLSAVDAHVGKHIFEEVigpKGILARKSRVLVTHGVTFLPQVDSIYVIKMGEISESGTFDQLVKNKGAFAD 867
Cdd:cd03251 162 LDEATSALDTESERLVQAAL---ERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAK 232
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
644-830 |
1.94e-29 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 118.27 E-value: 1.94e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 644 SKPHPMSIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK--------LAYVP 715
Cdd:COG1121 2 MMMPAIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKpprrarrrIGYVP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 716 QQA---WIQNATVRDNILFGQTYDR---KRYNKVIDACALRAdidiLSAGDLTEIGEKGIN-LSGGQKQRISLARAVYSD 788
Cdd:COG1121 82 QRAevdWDFPITVRDVVLMGRYGRRglfRRPSRADREAVDEA----LERVGLEDLADRPIGeLSGGQQQRVLLARALAQD 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 939619619 789 ADLYLLDDPLSAVDAHvGKHIFEEVIgpkGILARKSR--VLVTH 830
Cdd:COG1121 158 PDLLLLDEPFAGVDAA-TEEALYELL---RELRREGKtiLVVTH 197
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1309-1484 |
1.94e-29 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 117.99 E-value: 1.94e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDLV--LRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHML---R 1383
Cdd:cd03257 2 LEVKNLSVSFPTGGGSVkaLDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRkirR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1384 SRLTIIPQDPvlfSGSL-------RINLDPFEIKTDDEIWKALELSHLKSFVK-SLAAG-LN---HEiaeggenLSVGQR 1451
Cdd:cd03257 82 KEIQMVFQDP---MSSLnprmtigEQIAEPLRIHGKLSKKEARKEAVLLLLVGvGLPEEvLNrypHE-------LSGGQR 151
|
170 180 190
....*....|....*....|....*....|...
gi 939619619 1452 QLVCLARALLRKTKVLVLDEATAAVDLETDDLI 1484
Cdd:cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQI 184
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
1309-1486 |
2.16e-29 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 117.82 E-value: 2.16e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGlDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTI 1388
Cdd:COG1122 1 IELENLSFSYPGG-TPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRELRRKVGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1389 IPQDP------------VLFsGSLRINLDPFEIKtdDEIWKALELSHLKSFvkslaagLNHEIAEggenLSVGQRQLVCL 1456
Cdd:COG1122 80 VFQNPddqlfaptveedVAF-GPENLGLPREEIR--ERVEEALELVGLEHL-------ADRPPHE----LSGGQKQRVAI 145
|
170 180 190
....*....|....*....|....*....|.
gi 939619619 1457 ARALLRKTKVLVLDEATAAVDLE-TDDLIQI 1486
Cdd:COG1122 146 AGVLAMEPEVLVLDEPTAGLDPRgRRELLEL 176
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
604-869 |
5.75e-29 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 125.24 E-value: 5.75e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 604 PLTMLPMLITNLVQTQVSVNRINK--FLNSEELDPNSVLHDSSKPHPMSIENGEFSWG--DEItLRNINIEVKKGSLVAL 679
Cdd:TIGR01193 427 PLENIINLQPKLQAARVANNRLNEvyLVDSEFINKKKRTELNNLNGDIVINDVSYSYGygSNI-LSDISLTIKMNSKTTI 505
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 680 VGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKL-------------AYVPQQAWIQNATVRDNILFGQTyDRKRYNKVIDA 746
Cdd:TIGR01193 506 VGMSGSGKSTLAKLLVGFFQARSGEILLNGFSlkdidrhtlrqfiNYLPQEPYIFSGSILENLLLGAK-ENVSQDEIWAA 584
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 747 CAL---RADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEEVIGpkgiLARK 823
Cdd:TIGR01193 585 CEIaeiKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN----LQDK 660
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 939619619 824 SRVLVTHGVTFLPQVDSIYVIKMGEISESGTFDQLVKNKGAFADFI 869
Cdd:TIGR01193 661 TIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLI 706
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
1310-1486 |
7.28e-29 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 115.64 E-value: 7.28e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1310 EFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTII 1389
Cdd:cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1390 PQDP------------VLFsGSLRINLDPFEI-KTDDEIWKALELSHLksfvkslaagLNHEIAEggenLSVGQRQLVCL 1456
Cdd:cd03225 81 FQNPddqffgptveeeVAF-GLENLGLPEEEIeERVEEALELVGLEGL----------RDRSPFT----LSGGQKQRVAI 145
|
170 180 190
....*....|....*....|....*....|.
gi 939619619 1457 ARALLRKTKVLVLDEATAAVDLE-TDDLIQI 1486
Cdd:cd03225 146 AGVLAMDPDILLLDEPTAGLDPAgRRELLEL 176
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
1310-1485 |
3.13e-28 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 112.31 E-value: 3.13e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1310 EFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTII 1389
Cdd:cd03246 2 EVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1390 PQDPVLFSGSLRINLdpfeiktddeiwkalelshlksfvkslaaglnheiaeggenLSVGQRQLVCLARALLRKTKVLVL 1469
Cdd:cd03246 82 PQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILVL 120
|
170
....*....|....*.
gi 939619619 1470 DEATAAVDLETDDLIQ 1485
Cdd:cd03246 121 DEPNSHLDVEGERALN 136
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
374-830 |
5.63e-28 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 120.54 E-value: 5.63e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 374 LYAVLLFVLAAAQTFILGQYFHRMfiVG----LRIRTALINAIYRKALRISNSTKKESTVGEIVNLMA--VDAQRFMELT 447
Cdd:TIGR02868 52 LSVAAVAVRAFGIGRAVFRYLERL--VGhdaaLRSLGALRVRVYERLARQALAGRRRLRRGDLLGRLGadVDALQDLYVR 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 448 TYLNMIWSAPLQIG--LALYFLWQQLGPSVLAGLAVMIILIPVNGVIASRIKTYQIRQMKykDERVKLMNEVLSGIKVLK 525
Cdd:TIGR02868 130 VIVPAGVALVVGAAavAAIAVLSVPAALILAAGLLLAGFVAPLVSLRAARAAEQALARLR--GELAAQLTDALDGAAELV 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 526 LYAWEPSFEKQVLDIRDKEIATLRSTAYLNAgtsfLWSCAPFLVSLVTFATYVLIDENNVLD--------ATKTFVSLSL 597
Cdd:TIGR02868 208 ASGALPAALAQVEEADRELTRAERRAAAATA----LGAALTLLAAGLAVLGALWAGGPAVADgrlapvtlAVLVLLPLAA 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 598 FNilrfPLTMLPMLITNLVQTQVSVNRINKFLNSEELDPNSVLH---DSSKPHP-MSIENGEFSW-GDEITLRNINIEVK 672
Cdd:TIGR02868 284 FE----AFAALPAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPaagAVGLGKPtLELRDLSAGYpGAPPVLDGVSLDLP 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 673 KGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG-------------KLAYVPQQAWIQNATVRDNILFGQ-TYDRK 738
Cdd:TIGR02868 360 PGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGvpvssldqdevrrRVSVCAQDAHLFDTTVRENLRLARpDATDE 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 739 RYNKVIDACALRADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEEVIGPkg 818
Cdd:TIGR02868 440 ELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAA-- 517
|
490
....*....|..
gi 939619619 819 iLARKSRVLVTH 830
Cdd:TIGR02868 518 -LSGRTVVLITH 528
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
1090-1490 |
6.14e-28 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 120.70 E-value: 6.14e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1090 NRFSKDIDTIDNVLpfnIRVVigqAYMVLATIVVISLStpIFLAVI-VPIA---------------FLYYFAQRfyvATS 1153
Cdd:PRK11160 121 NRLVADVDTLDHLY---LRLI---SPLVAALVVILVLT--IGLSFFdLTLAltlggillllllllpLLFYRLGK---KPG 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1154 RQLMRLESVSRSpiysHFSETVTGASTIRAYNVGDRF---IEESDAKVDKNQvckypSVIANrwlairLEMVGNLIILFA 1230
Cdd:PRK11160 190 QDLTHLRAQYRV----QLTEWLQGQAELTLFGAEDRYrqqLEQTEQQWLAAQ-----RRQAN------LTGLSQALMILA 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1231 SLFAVL----------GGQTNPG-LVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERIKEYgeTKQEAPWELEQDKNK 1299
Cdd:PRK11160 255 NGLTVVlmlwlaaggvGGNAQPGaLIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEI--TEQKPEVTFPTTSTA 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1300 PknwPQEGRVEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGL 1379
Cdd:PRK11160 333 A---ADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSE 409
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1380 HMLRSRLTIIPQDPVLFSGSLRINL---DPfeIKTDDEIWKALELSHLKSFVKSlAAGLNHEIAEGGENLSVGQRQLVCL 1456
Cdd:PRK11160 410 AALRQAISVVSQRVHLFSATLRDNLllaAP--NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGI 486
|
410 420 430
....*....|....*....|....*....|....*.
gi 939619619 1457 ARALLRKTKVLVLDEATAAVDLETDDLI--QIRHFC 1490
Cdd:PRK11160 487 ARALLHDAPLLLLDEPTEGLDAETERQIleLLAEHA 522
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
374-866 |
5.39e-27 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 119.06 E-value: 5.39e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 374 LYAVLLFVLAAAQTfilGQYFHRMFIVGLRIRTALINAIYRKALRISNSTKkestVGEIVNLMAVDAQRFME-LTTYLN- 451
Cdd:TIGR00958 209 LLSIASSVSAGLRG---GSFNYTMARINLRIREDLFRSLLRQDLGFFDENK----TGELTSRLSSDTQTMSRsLSLNVNv 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 452 MIWSapLQIGLALYFLWQQLGPSvlagLA-VMIILIPVNGVIASRIKTY------QIRQMKYKDERVKLmnEVLSGIKVL 524
Cdd:TIGR00958 282 LLRN--LVMLLGLLGFMLWLSPR----LTmVTLINLPLVFLAEKVFGKRyqllseELQEAVAKANQVAE--EALSGMRTV 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 525 KLYAWEPS----FEKQVLDIRDkeIATLRSTAYLnagtSFLWS---CAPFLVSLVTFATYVLIDENNV-LDATKTFV--S 594
Cdd:TIGR00958 354 RSFAAEEGeasrFKEALEETLQ--LNKRKALAYA----GYLWTtsvLGMLIQVLVLYYGGQLVLTGKVsSGNLVSFLlyQ 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 595 LSLFNILRFPLTMLPmlitNLVQTQVSVNRINKFLNSEELDPNSVLHdssKPHPMS--IE--NGEFSW---GDEITLRNI 667
Cdd:TIGR00958 428 EQLGEAVRVLSYVYS----GMMQAVGASEKVFEYLDRKPNIPLTGTL---APLNLEglIEfqDVSFSYpnrPDVPVLKGL 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 668 NIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG-------------KLAYVPQQAWIQNATVRDNILFGQT 734
Cdd:TIGR00958 501 TFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGvplvqydhhylhrQVALVGQEPVLFSGSVRENIAYGLT 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 735 Y--DRKRYNKVIDACAlRADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVgkhifEE 812
Cdd:TIGR00958 581 DtpDEEIMAAAKAANA-HDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC-----EQ 654
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 939619619 813 VIGPKGILARKSRVLVTHGVTFLPQVDSIYVIKMGEISESGTFDQLVKNKGAFA 866
Cdd:TIGR00958 655 LLQESRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYK 708
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
614-860 |
8.40e-27 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 117.06 E-value: 8.40e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 614 NLVQTQVSVNRINKFLNSEeldpnsvlhdSSKPHPMSIENGEFSW-----------GDEITLRNINIEVKKGSLVALVGT 682
Cdd:TIGR01842 283 QFSGARQAYKRLNELLANY----------PSRDPAMPLPEPEGHLsvenvtivppgGKKPTLRGISFSLQAGEALAIIGP 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 683 VGSGKSSVVQAFLGEMEKLAGVV------------NTVGK-LAYVPQQAWIQNATVRDNIL-FGQTYDRKrynKVIDACA 748
Cdd:TIGR01842 353 SGSGKSTLARLIVGIWPPTSGSVrldgadlkqwdrETFGKhIGYLPQDVELFPGTVAENIArFGENADPE---KIIEAAK 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 749 LrAD----IDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAhVGkhifeEVIGPKGILARKS 824
Cdd:TIGR01842 430 L-AGvhelILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDE-EG-----EQALANAIKALKA 502
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 939619619 825 R----VLVTHGVTFLPQVDSIYVIKMGEISESGTFDQLVK 860
Cdd:TIGR01842 503 RgitvVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
652-849 |
9.15e-27 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 109.99 E-value: 9.15e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 652 ENGEFSW-GDEI-TLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG-------------KLAYVPQ 716
Cdd:cd03245 6 RNVSFSYpNQEIpALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGtdirqldpadlrrNIGYVPQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 717 QAWIQNATVRDNILFGQTY-DRKRYNKVIDACALRADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLD 795
Cdd:cd03245 86 DVTLFYGTLRDNITLGAPLaDDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLD 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 939619619 796 DPLSAVDAHVGKHIFEEVigpKGILARKSRVLVTHGVTFLPQVDSIYVIKMGEI 849
Cdd:cd03245 166 EPTSAMDMNSEERLKERL---RQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
1306-1477 |
1.72e-26 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 116.39 E-value: 1.72e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1306 EGRVEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSR 1385
Cdd:COG4618 328 KGRLSVENLTVVPPGSKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDREELGRH 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1386 LTIIPQDPVLFSGSLRINLDPFEIKTDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLRKTK 1465
Cdd:COG4618 408 IGYLPQDVELFDGTIAENIARFGDADPEKVVAAAKLAGVHEMILRLPDGYDTRIGEGGARLSGGQRQRIGLARALYGDPR 487
|
170
....*....|..
gi 939619619 1466 VLVLDEATAAVD 1477
Cdd:COG4618 488 LVVLDEPNSNLD 499
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1278-1477 |
2.61e-26 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 115.00 E-value: 2.61e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1278 RIKEYGETKQ--------EAPWELEQDKNKPKNWPQEGR--VEFQNFQVRYREGLD---LVLRGVSFNIQGGEKVGIVGR 1344
Cdd:COG1123 220 RIVEDGPPEEilaapqalAAVPRLGAARGRAAPAAAAAEplLEVRNLSKRYPVRGKggvRAVDDVSLTLRRGETLGLVGE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1345 TGAGKSSLTLALFRIIEAAGGRISIDGVDIASMG---LHMLRSRLTIIPQDPvlfSGSlrinLDPFEiKTDDEIWKALEL 1421
Cdd:COG1123 300 SGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSrrsLRELRRRVQMVFQDP---YSS----LNPRM-TVGDIIAEPLRL 371
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 939619619 1422 SHLKSF------VKSLAA--GLNHEIAE--GGEnLSVGQRQLVCLARALLRKTKVLVLDEATAAVD 1477
Cdd:COG1123 372 HGLLSRaerrerVAELLErvGLPPDLADryPHE-LSGGQRQRVAIARALALEPKLLILDEPTSALD 436
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
1310-1490 |
3.01e-26 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 106.18 E-value: 3.01e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1310 EFQNFQVRYREGLdlVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTII 1389
Cdd:cd00267 1 EIENLSFRYGGRT--ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1390 PQdpvlfsgslrinldpfeiktddeiwkalelshlksfvkslaaglnheiaeggenLSVGQRQLVCLARALLRKTKVLVL 1469
Cdd:cd00267 79 PQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104
|
170 180
....*....|....*....|...
gi 939619619 1470 DEATAAVDLETDDLIQ--IRHFC 1490
Cdd:cd00267 105 DEPTSGLDPASRERLLelLRELA 127
|
|
| ABC_6TM_exporters |
cd07346 |
Six-transmembrane helical domain of the ATP-binding cassette transporters; This family ... |
333-625 |
3.75e-26 |
|
Six-transmembrane helical domain of the ATP-binding cassette transporters; This family represents a subunit of six transmembrane (TM) helices typically found in the ATP-binding cassette (ABC) transporters that function as exporters, which contain 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds and a various type of lipids. In addition to ABC exporters, ABC transporters include two classes of ABC importers, classified depending on details of their architecture and mechanism. Only the ABC exporters are included in this family. ABC transporters typically consist of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The sequences and structures of the TMDs are quite varied between the different type of transporters, suggesting chemical diversity of the translocated substrates, whereas NBDs are conserved among all ABC transporters. The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane. However, some ABC genes are organized as half-transporters, which must form either homodimers or heterodimers to form a functional unit. The ABC exporters play a role in multidrug resistance to antibiotics and anticancer agents, and mutations in these proteins have been shown to cause severe human diseases such as cystic fibrosis.
Pssm-ID: 349983 [Multi-domain] Cd Length: 292 Bit Score: 110.33 E-value: 3.75e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 333 FLFGALMKLFTDTLTFAQPQVLSLIISFVEAQDAEPEWkgILYAVLLFVLAAAQTFILGQYFHRMFIVGLRIRTALINAI 412
Cdd:cd07346 1 LLLALLLLLLATALGLALPLLTKLLIDDVIPAGDLSLL--LWIALLLLLLALLRALLSYLRRYLAARLGQRVVFDLRRDL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 413 YRKALRISNSTKKESTVGEIVNLMAVDAQRFMEL-TTYLNMIWSAPLQIGLALYFL----WQqlgpSVLAGLAVMIILIP 487
Cdd:cd07346 79 FRHLQRLSLSFFDRNRTGDLMSRLTSDVDAVQNLvSSGLLQLLSDVLTLIGALVILfylnWK----LTLVALLLLPLYVL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 488 VNGVIASRIKTYQIRQMKYKDERVKLMNEVLSGIKVLKLYAWEPS----FEKQVLDIRDKEIATLRSTAYLNAGTSFLWS 563
Cdd:cd07346 155 ILRYFRRRIRKASREVRESLAELSAFLQESLSGIRVVKAFAAEEReierFREANRDLRDANLRAARLSALFSPLIGLLTA 234
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 939619619 564 CAPFLVSLvtFATYVLIdeNNVLDATKTFVSLSLFNILRFPLTMLPMLITNLVQTQVSVNRI 625
Cdd:cd07346 235 LGTALVLL--YGGYLVL--QGSLTIGELVAFLAYLGMLFGPIQRLANLYNQLQQALASLERI 292
|
|
| type_I_sec_HlyB |
TIGR01846 |
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in ... |
513-867 |
5.22e-26 |
|
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273831 [Multi-domain] Cd Length: 694 Bit Score: 115.61 E-value: 5.22e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 513 LMNEVLSGIKVLKLYAWEPsfekQVLDIRDKEIA--TLRSTAYLNAGTsfLWSCAPFLVSLVTFATYVLIDENNVLDATK 590
Cdd:TIGR01846 319 FLVESVTGIETIKATATEP----QFQNRWDRQLAayVAASFRVTNLGN--IAGQAIELIQKLTFAILLWFGAHLVIGGAL 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 591 TFVSLSLFNIL----RFPLTMLPMLITNLVQTQVSVNRINKFLNSeeldPNSVLHDSSKPHP-----MSIENGEFSWGDE 661
Cdd:TIGR01846 393 SPGQLVAFNMLagrvTQPVLRLAQLWQDFQQTGIALERLGDILNS----PTEPRSAGLAALPelrgaITFENIRFRYAPD 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 662 --ITLRNINIEVKKGSLVALVGTVGSGKSSVV------------QAFLGEME-KLAGVVNTVGKLAYVPQQAWIQNATVR 726
Cdd:TIGR01846 469 spEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTkllqrlytpqhgQVLVDGVDlAIADPAWLRRQMGVVLQENVLFSRSIR 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 727 DNILFGQTydRKRYNKVIDACALRADIDILSA---GDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDA 803
Cdd:TIGR01846 549 DNIALCNP--GAPFEHVIHAAKLAGAHDFISElpqGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDY 626
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 939619619 804 HVGKHIFEEVigpKGILARKSRVLVTHGVTFLPQVDSIYVIKMGEISESGTFDQLVKNKGAFAD 867
Cdd:TIGR01846 627 ESEALIMRNM---REICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYAR 687
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1309-1478 |
5.80e-26 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 108.35 E-value: 5.80e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDL--VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRL 1386
Cdd:COG1124 2 LEVRNLSVSYGQGGRRvpVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKAFRRRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1387 TIIPQDPvlfSGSL-------RINLDPFEI----KTDDEIWKALELSHLKSfvkSLAAGLNHEiaeggenLSVGQRQLVC 1455
Cdd:COG1124 82 QMVFQDP---YASLhprhtvdRILAEPLRIhglpDREERIAELLEQVGLPP---SFLDRYPHQ-------LSGGQRQRVA 148
|
170 180
....*....|....*....|...
gi 939619619 1456 LARALLRKTKVLVLDEATAAVDL 1478
Cdd:COG1124 149 IARALILEPELLLLDEPTSALDV 171
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1309-1477 |
8.56e-26 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 113.46 E-value: 8.56e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAG---GRISIDGVDIASMGLHMLRSR 1385
Cdd:COG1123 5 LEVRDLSVRYPGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGrisGEVLLDGRDLLELSEALRGRR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1386 LTIIPQDPvlfsgslRINLDPFEIktDDEIWKALELSHL-----KSFVKSLAA--GLNHEIAEGGENLSVGQRQLVCLAR 1458
Cdd:COG1123 85 IGMVFQDP-------MTQLNPVTV--GDQIAEALENLGLsraeaRARVLELLEavGLERRLDRYPHQLSGGQRQRVAIAM 155
|
170
....*....|....*....
gi 939619619 1459 ALLRKTKVLVLDEATAAVD 1477
Cdd:COG1123 156 ALALDPDLLIADEPTTALD 174
|
|
| MsbA_rel |
TIGR02204 |
ABC transporter, permease/ATP-binding protein; This protein is related to a Proteobacterial ... |
624-868 |
1.54e-25 |
|
ABC transporter, permease/ATP-binding protein; This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Pssm-ID: 131259 [Multi-domain] Cd Length: 576 Bit Score: 113.26 E-value: 1.54e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 624 RINKFLNsEELDPNSVLHDSSKPHP----MSIENGEFSWG---DEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLG 696
Cdd:TIGR02204 310 RLIELLQ-AEPDIKAPAHPKTLPVPlrgeIEFEQVNFAYParpDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLR 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 697 EMEKLAGVVNTVG-------------KLAYVPQQAWIQNATVRDNILFGQTyDRKRyNKVIDAC-ALRAD--IDILSAGD 760
Cdd:TIGR02204 389 FYDPQSGRILLDGvdlrqldpaelraRMALVPQDPVLFAASVMENIRYGRP-DATD-EEVEAAArAAHAHefISALPEGY 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 761 LTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEEVigpKGILARKSRVLVTHGVTFLPQVDS 840
Cdd:TIGR02204 467 DTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL---ETLMKGRTTLIIAHRLATVLKADR 543
|
250 260
....*....|....*....|....*...
gi 939619619 841 IYVIKMGEISESGTFDQLVKNKGAFADF 868
Cdd:TIGR02204 544 IVVMDQGRIVAQGTHAELIAKGGLYARL 571
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
1309-1480 |
1.61e-25 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 105.63 E-value: 1.61e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRY---REGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGvdiasmglhmlrsR 1385
Cdd:cd03250 1 ISVEDASFTWdsgEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1386 LTIIPQDPVLFSGSLRINL---DPFEiktDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLR 1462
Cdd:cd03250 68 IAYVSQEPWIQNGTIRENIlfgKPFD---EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYS 144
|
170
....*....|....*...
gi 939619619 1463 KTKVLVLDEATAAVDLET 1480
Cdd:cd03250 145 DADIYLLDDPLSAVDAHV 162
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
1310-1485 |
3.16e-25 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 104.05 E-value: 3.16e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1310 EFQNFQVRYREGLdlVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTII 1389
Cdd:cd03214 1 EVENLSVGYGGRT--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1390 PQdpVLfsgslrinldpfeiktddeiwKALELSHLKsfvkslaaglNHEIAEggenLSVGQRQLVCLARALLRKTKVLVL 1469
Cdd:cd03214 79 PQ--AL---------------------ELLGLAHLA----------DRPFNE----LSGGERQRVLLARALAQEPPILLL 121
|
170 180
....*....|....*....|
gi 939619619 1470 DEATAAVDL----ETDDLIQ 1485
Cdd:cd03214 122 DEPTSHLDIahqiELLELLR 141
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1308-1478 |
3.92e-25 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 106.28 E-value: 3.92e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1308 RVEFQNFQVRYREGLdlVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLT 1387
Cdd:COG1120 1 MLEAENLSVGYGGRP--VLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELARRIA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1388 IIPQDPVL-FSGSLR----------INLDPFEIKTDDEI-WKALE---LSHLKsfvkslaaglNHEIAEggenLSVGQRQ 1452
Cdd:COG1120 79 YVPQEPPApFGLTVRelvalgryphLGLFGRPSAEDREAvEEALErtgLEHLA----------DRPVDE----LSGGERQ 144
|
170 180
....*....|....*....|....*.
gi 939619619 1453 LVCLARALLRKTKVLVLDEATAAVDL 1478
Cdd:COG1120 145 RVLIARALAQEPPLLLLDEPTSHLDL 170
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
1306-1479 |
6.90e-25 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 110.90 E-value: 6.90e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1306 EGRVEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSR 1385
Cdd:TIGR01842 314 EGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1386 LTIIPQDPVLFSGSLRINLDPF-EIKTDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLRKT 1464
Cdd:TIGR01842 394 IGYLPQDVELFPGTVAENIARFgENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP 473
|
170
....*....|....*
gi 939619619 1465 KVLVLDEATAAVDLE 1479
Cdd:TIGR01842 474 KLVVLDEPNSNLDEE 488
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
664-866 |
2.32e-24 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 103.33 E-value: 2.32e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG-------------KLAYVPQQAWIQNATVRDNIL 730
Cdd:cd03252 18 LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGhdlaladpawlrrQVGVVLQENVLFNRSIRDNIA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 731 FGQT-YDRKRynkVIDACAL---RADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVG 806
Cdd:cd03252 98 LADPgMSMER---VIEAAKLagaHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 807 KHIFEEVigpKGILARKSRVLVTHGVTFLPQVDSIYVIKMGEISESGTFDQLVKNKGAFA 866
Cdd:cd03252 175 HAIMRNM---HDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYA 231
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
649-854 |
1.33e-23 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 100.65 E-value: 1.33e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 649 MSIENGEFSWGDEI--TLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVV-------NTVG------KLAY 713
Cdd:cd03244 3 IEFKNVSLRYRPNLppVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIlidgvdiSKIGlhdlrsRISI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 714 VPQQAWIQNATVRDNI-LFGQTYDRKRYNkVIDACALRADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLY 792
Cdd:cd03244 83 IPQDPVLFSGTIRSNLdPFGEYSDEELWQ-ALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKIL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 939619619 793 LLDDPLSAVDAHVGKHIfEEVIGpkgiLARKSRVLVT--HGVTFLPQVDSIYVIKMGEISESGT 854
Cdd:cd03244 162 VLDEATASVDPETDALI-QKTIR----EAFKDCTVLTiaHRLDTIIDSDRILVLDKGRVVEFDS 220
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
612-869 |
3.49e-23 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 106.06 E-value: 3.49e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 612 ITNLVQTQVSVnrinKFLNSEELDPNSVLhdsskphpMSIENGEFSWGDEIT--LRNINIEVKKGSLVALVGTVGSGKSS 689
Cdd:PRK11160 314 INEITEQKPEV----TFPTTSTAAADQVS--------LTLNNVSFTYPDQPQpvLKGLSLQIKAGEKVALLGRTGCGKST 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 690 VVQAFLGEMEKLAGVVNTVGK-------------LAYVPQQAWIQNATVRDNILFgqtydrkrynkvidACALRAD---I 753
Cdd:PRK11160 382 LLQLLTRAWDPQQGEILLNGQpiadyseaalrqaISVVSQRVHLFSATLRDNLLL--------------AAPNASDealI 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 754 DILSA---GDLTE--------IGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFE---EVIgpkgi 819
Cdd:PRK11160 448 EVLQQvglEKLLEddkglnawLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILEllaEHA----- 522
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 939619619 820 lARKSRVLVTHGVTFLPQVDSIYVIKMGEISESGTFDQLVKNKGAFADFI 869
Cdd:PRK11160 523 -QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLK 571
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
1309-1481 |
5.42e-23 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 97.77 E-value: 5.42e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGlHMLRSRLTI 1388
Cdd:cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE-KALSSLISV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1389 IPQDPVLFSGSLRINLdpfeiktddeiwkalelshlksfvkslaaglnheiaegGENLSVGQRQLVCLARALLRKTKVLV 1468
Cdd:cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121
|
170
....*....|...
gi 939619619 1469 LDEATAAVDLETD 1481
Cdd:cd03247 122 LDEPTVGLDPITE 134
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
1309-1477 |
5.94e-23 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 99.18 E-value: 5.94e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREglDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEA-----AGGRISIDGVDIASMGLHM-- 1381
Cdd:cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLipgapDEGEVLLDGKDIYDLDVDVle 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1382 LRSRLTIIPQDPVLFSGS--------LRINLDPFEIKTDDEIWKALELSHLKSFVKSLAAGLNheiaeggenLSVGQRQL 1453
Cdd:cd03260 79 LRRRVGMVFQKPNPFPGSiydnvaygLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALG---------LSGGQQQR 149
|
170 180
....*....|....*....|....
gi 939619619 1454 VCLARALLRKTKVLVLDEATAAVD 1477
Cdd:cd03260 150 LCLARALANEPEVLLLDEPTSALD 173
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
659-857 |
1.49e-22 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 104.06 E-value: 1.49e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 659 GDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVV------------NTVGK-LAYVPQQAWIQNATV 725
Cdd:COG4618 343 SKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVrldgadlsqwdrEELGRhIGYLPQDVELFDGTI 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 726 RDNI-LFGQTYDRKrynkVIDAcALRADID--ILSagdL-----TEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDP 797
Cdd:COG4618 423 AENIaRFGDADPEK----VVAA-AKLAGVHemILR---LpdgydTRIGEGGARLSGGQRQRIGLARALYGDPRLVVLDEP 494
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 939619619 798 LSAVDAhvgkhifeevIGPKG----ILARKSR----VLVTHGVTFLPQVDSIYVIKMGEISESGTFDQ 857
Cdd:COG4618 495 NSNLDD----------EGEAAlaaaIRALKARgatvVVITHRPSLLAAVDKLLVLRDGRVQAFGPRDE 552
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
660-866 |
1.51e-22 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 103.95 E-value: 1.51e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 660 DEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFL-------GEME---------KLAGVVNTVgklAYVPQQAWIQNA 723
Cdd:PRK11176 355 EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTrfydideGEILldghdlrdyTLASLRNQV---ALVSQNVHLFND 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 724 TVRDNILF--GQTYDRKRYNKVID-ACALRAdIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSA 800
Cdd:PRK11176 432 TIANNIAYarTEQYSREQIEEAARmAYAMDF-INKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA 510
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 939619619 801 VDAHVGKHI---FEEVigpkgilaRKSR-VLV-THGVTFLPQVDSIYVIKMGEISESGTFDQLVKNKGAFA 866
Cdd:PRK11176 511 LDTESERAIqaaLDEL--------QKNRtSLViAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYA 573
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1309-1480 |
1.54e-22 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 97.82 E-value: 1.54e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDlVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASM---GLHMLRSR 1385
Cdd:COG2884 2 IRFENVSKRYPGGRE-ALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLkrrEIPYLRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1386 LTIIPQDP-----------VLFsgSLRIN-LDPFEIKTDdeIWKALELSHLKSFVKSLAaglnHEiaeggenLSVGQRQL 1453
Cdd:COG2884 81 IGVVFQDFrllpdrtvyenVAL--PLRVTgKSRKEIRRR--VREVLDLVGLSDKAKALP----HE-------LSGGEQQR 145
|
170 180
....*....|....*....|....*..
gi 939619619 1454 VCLARALLRKTKVLVLDEATAAVDLET 1480
Cdd:COG2884 146 VAIARALVNRPELLLADEPTGNLDPET 172
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
664-799 |
2.26e-22 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 95.02 E-value: 2.26e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG-------------KLAYVPQQAWIQNA-TVRDNI 729
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGqdltdderkslrkEIGYVFQDPQLFPRlTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 939619619 730 LFGQtYDRKRYNKVIDAcalRADIDI--LSAGDL--TEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLS 799
Cdd:pfam00005 81 RLGL-LLKGLSKREKDA---RAEEALekLGLGDLadRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
585-867 |
2.31e-22 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 103.25 E-value: 2.31e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 585 VLDATKTFVSLSLFnILRFPLTMLPML----ITNLVQT-QVSVNRINKFLNSEeldpnSVLHDSSKPHP-----MSIENG 654
Cdd:PRK10789 246 VVNGSLTLGQLTSF-VMYLGLMIWPMLalawMFNIVERgSAAYSRIRAMLAEA-----PVVKDGSEPVPegrgeLDVNIR 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 655 EFSW--GDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVV-------------NTVGKLAYVPQQAW 719
Cdd:PRK10789 320 QFTYpqTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIrfhdipltklqldSWRSRLAVVSQTPF 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 720 IQNATVRDNILFGQ-TYDRKRYNKVIDACALRADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPL 798
Cdd:PRK10789 400 LFSDTVANNIALGRpDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 939619619 799 SAVDAHVGKHIFEEVigpkgILARKSRVLV--THGVTFLPQVDSIYVIKMGEISESGTFDQLVKNKGAFAD 867
Cdd:PRK10789 480 SAVDGRTEHQILHNL-----RQWGEGRTVIisAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRD 545
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1308-1490 |
4.60e-22 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 96.01 E-value: 4.60e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1308 RVEFQNFQVRYREglDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLtlalFRII----EAAGGRISIDGVDIASMGLHmLR 1383
Cdd:COG4133 2 MLEAENLSCRRGE--RLLFSGLSFTLAAGEALALTGPNGSGKTTL----LRILagllPPSAGEVLWNGEPIRDARED-YR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1384 SRLTIIPQDPVLFSG-SLRINLDpF------EIKTDDEIWKALElshlksfvkslAAGLNHEIAEGGENLSVGQRQLVCL 1456
Cdd:COG4133 75 RRLAYLGHADGLKPElTVRENLR-FwaalygLRADREAIDEALE-----------AVGLAGLADLPVRQLSAGQKRRVAL 142
|
170 180 190
....*....|....*....|....*....|....*.
gi 939619619 1457 ARALLRKTKVLVLDEATAAVDLETDDLIQ--IRHFC 1490
Cdd:COG4133 143 ARLLLSPAPLWLLDEPFTALDAAGVALLAelIAAHL 178
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
1309-1480 |
6.95e-22 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 95.66 E-value: 6.95e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREglDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHmlRSRLTI 1388
Cdd:cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE--RRNIGM 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1389 IPQDPVLF----------SGsLRINLDPFEIKTD--DEIWKALELSHLksfvkslaagLNHEIAEggenLSVGQRQLVCL 1456
Cdd:cd03259 77 VFQDYALFphltvaeniaFG-LKLRGVPKAEIRArvRELLELVGLEGL----------LNRYPHE----LSGGQQQRVAL 141
|
170 180
....*....|....*....|....
gi 939619619 1457 ARALLRKTKVLVLDEATAAVDLET 1480
Cdd:cd03259 142 ARALAREPSLLLLDEPLSALDAKL 165
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
485-1485 |
7.74e-22 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 103.19 E-value: 7.74e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 485 LIPVNGVIASR-IKTYQIRQMKYKDERVKLMNEVLSGIKVLKLYAWEPSFEKQvLDIRDKeiatLRSTAYLNAgtSFLWS 563
Cdd:PTZ00265 209 LIYICGVICNKkVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKK-FNLSEK----LYSKYILKA--NFMES 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 564 CAPFLVS---LVTFA------TYVLIDENNVLDATKTFVSLSLFNIL------RFPLTMLPMLITNLVQTQVSVNRINKF 628
Cdd:PTZ00265 282 LHIGMINgfiLASYAfgfwygTRIIISDLSNQQPNNDFHGGSVISILlgvlisMFMLTIILPNITEYMKSLEATNSLYEI 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 629 LNSEELDPNS----VLHDSSKphpMSIENGEFSWG---DEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKL 701
Cdd:PTZ00265 362 INRKPLVENNddgkKLKDIKK---IQFKNVRFHYDtrkDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 702 AG--VVNTV------------GKLAYVPQQAWIQNATVRDNILFG----------------------------------- 732
Cdd:PTZ00265 439 EGdiIINDShnlkdinlkwwrSKIGVVSQDPLLFSNSIKNNIKYSlyslkdlealsnyynedgndsqenknkrnscrakc 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 733 --------QTYD-------RKRYNKVIDACALRADIDIL------SAGDLTE--IGEKGINLSGGQKQRISLARAVYSDA 789
Cdd:PTZ00265 519 agdlndmsNTTDsneliemRKNYQTIKDSEVVDVSKKVLihdfvsALPDKYEtlVGSNASKLSGGQKQRISIARAIIRNP 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 790 DLYLLDDPLSAVDaHVGKHIFEEVIGP-KGILARKSrVLVTHGVTFLPQVDSIYVIKMGEISESGTFDQLV--------- 859
Cdd:PTZ00265 599 KILILDEATSSLD-NKSEYLVQKTINNlKGNENRIT-IIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGedptkdnke 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 860 -KNKGAFADFIIQHLQEGNEEEEELNQIKRQISSTADVPELLGTVEKAIKLARTESLSDSISVTSADSLMGGggSLRRRT 938
Cdd:PTZ00265 677 nNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKS--SAYKDS 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 939 KRQDSHDSVASAASLK------KKQEVEGKLIETEKSQTGGVEF----------------AVYKH---YIKSVGI-FLSV 992
Cdd:PTZ00265 755 ERGYDPDEMNGNSKHEnesasnKKSCKMSDENASENNAGGKLPFlrnlfkrkpkapnnlrIVYREifsYKKDVTIiALSI 834
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 993 atLVLNFVFQAFQIGSNLWLTQWANDQNVANDTGLRDMYLGVYG-AFGFGQVATNFFSSLaISLGCLKCSQL-LHQTLLY 1070
Cdd:PTZ00265 835 --LVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAiAMFISETLKNYYNNV-IGEKVEKTMKRrLFENILY 911
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1071 YNlrwpMELFDT---TPlGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIVVISLSTPIFLAVIVPIAFLYY--FA 1145
Cdd:PTZ00265 912 QE----ISFFDQdkhAP-GLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMrvFA 986
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1146 QRFYVATSRQLMRLESVSRSPIYSHFS-------------ETVTGASTIRAYNVGDRFIEESDAKVDKNQVCKYPSVIAN 1212
Cdd:PTZ00265 987 IRARLTANKDVEKKEINQPGTVFAYNSddeifkdpsfliqEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVN 1066
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1213 R------------------WLAIRLEMVGNLII--LFASLFAVLggqtnpglvgLSVSYALQvtqtlnwLVRMSSDIETN 1272
Cdd:PTZ00265 1067 SmlwgfsqsaqlfinsfayWFGSFLIRRGTILVddFMKSLFTFL----------FTGSYAGK-------LMSLKGDSENA 1129
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1273 IVSVERIkeYGETKQEAPWELEQD---KNKPKNwPQEGRVEFQNFQVRYREGLDL-VLRGVSFNIQGGEKVGIVGRTGAG 1348
Cdd:PTZ00265 1130 KLSFEKY--YPLIIRKSNIDVRDNggiRIKNKN-DIKGKIEIMDVNFRYISRPNVpIYKDLTFSCDSKKTTAIVGETGSG 1206
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1349 KSSLTLALFRIIEAA------------------------------------------------------GGRISIDGVDI 1374
Cdd:PTZ00265 1207 KSTVMSLLMRFYDLKndhhivfknehtndmtneqdyqgdeeqnvgmknvnefsltkeggsgedstvfknSGKILLDGVDI 1286
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1375 ASMGLHMLRSRLTIIPQDPVLFSGSLRINLDpF--EIKTDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQ 1452
Cdd:PTZ00265 1287 CDYNLKDLRNLFSIVSQEPMLFNMSIYENIK-FgkEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQ 1365
|
1210 1220 1230
....*....|....*....|....*....|...
gi 939619619 1453 LVCLARALLRKTKVLVLDEATAAVDLETDDLIQ 1485
Cdd:PTZ00265 1366 RIAIARALLREPKILLLDEATSSLDSNSEKLIE 1398
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
1309-1485 |
1.21e-21 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 93.79 E-value: 1.21e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYreGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHM--LRSRL 1386
Cdd:cd03229 1 LELKNVSKRY--GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELppLRRRI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1387 TIIPQDPVLFSgslriNLDPFEIktddeiwkalelshlksfvkslaaglnheIAEGgenLSVGQRQLVCLARALLRKTKV 1466
Cdd:cd03229 79 GMVFQDFALFP-----HLTVLEN-----------------------------IALG---LSGGQQQRVALARALAMDPDV 121
|
170
....*....|....*....
gi 939619619 1467 LVLDEATAAVDLETDDLIQ 1485
Cdd:cd03229 122 LLLDEPTSALDPITRREVR 140
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1325-1485 |
1.21e-21 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 95.69 E-value: 1.21e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLhMLRSRLTIIPQDPVLFSG-SLRIN 1403
Cdd:COG4555 16 ALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPR-EARRQIGVLPDERGLYDRlTVREN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1404 LDPF---------EIKTD-DEIWKALELShlkSFVKSLAAGLnheiaeggenlSVGQRQLVCLARALLRKTKVLVLDEAT 1473
Cdd:COG4555 95 IRYFaelyglfdeELKKRiEELIELLGLE---EFLDRRVGEL-----------STGMKKKVALARALVHDPKVLLLDEPT 160
|
170
....*....|..
gi 939619619 1474 AAVDLETDDLIQ 1485
Cdd:COG4555 161 NGLDVMARRLLR 172
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
650-848 |
1.24e-21 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 94.84 E-value: 1.24e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSWGD--EITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKL-------------AYV 714
Cdd:cd03225 1 ELKNLSFSYPDgaRPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDltklslkelrrkvGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 715 PQQAWIQ--NATVRDNILFG---QTYDRKRYNKVIDACalradidiLSAGDLTEIGEKGI-NLSGGQKQRISLARAVYSD 788
Cdd:cd03225 81 FQNPDDQffGPTVEEEVAFGlenLGLPEEEIEERVEEA--------LELVGLEGLRDRSPfTLSGGQKQRVAIAGVLAMD 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 939619619 789 ADLYLLDDPLSAVDAHVGKHIFEEVIGpkgiLARKSR--VLVTHGVTFLPQV-DSIYVIKMGE 848
Cdd:cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKK----LKAEGKtiIIVTHDLDLLLELaDRVIVLEDGK 211
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
1328-1477 |
1.78e-21 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 97.49 E-value: 1.78e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1328 GVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMG---LHMLRSRLTIIPQDPvlfSGSL---- 1400
Cdd:COG4608 36 GVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSgreLRPLRRRMQMVFQDP---YASLnprm 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1401 ---RINLDPFEIKT-------DDEIWKALELshlksfVkslaaGLN--------HEiaeggenLSVGQRQLVCLARALLR 1462
Cdd:COG4608 113 tvgDIIAEPLRIHGlaskaerRERVAELLEL------V-----GLRpehadrypHE-------FSGGQRQRIGIARALAL 174
|
170
....*....|....*
gi 939619619 1463 KTKVLVLDEATAAVD 1477
Cdd:COG4608 175 NPKLIVCDEPVSALD 189
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
664-830 |
2.39e-21 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 93.45 E-value: 2.39e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG--KLAYVPQQ---AWIQNATVRDNILFGqTYDRK 738
Cdd:NF040873 8 LHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAGgaRVAYVPQRsevPDSLPLTVRDLVAMG-RWARR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 739 RYNKVIDACALRADIDILSAGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEevigpk 817
Cdd:NF040873 87 GLWRRLTRDDRAAVDDALERVGLADLAGRQLGeLSGGQRQRALLAQGLAQEADLLLLDEPTTGLDAESRERIIA------ 160
|
170
....*....|....*...
gi 939619619 818 gILARKSR-----VLVTH 830
Cdd:NF040873 161 -LLAEEHArgatvVVVTH 177
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
1208-1480 |
2.78e-21 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 99.88 E-value: 2.78e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1208 SVIANRWLAIRLEM--------VGNLIILFASLFA---VLGGQTNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSV 1276
Cdd:COG4178 253 AVIANWRRLIRRQRnltffttgYGQLAVIFPILVAaprYFAGEITLGGLMQAASAFGQVQGALSWFVDNYQSLAEWRATV 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1277 ERIKEYGETKQEAPwELEQDKNKPKNwPQEGRVEFQNFQVRYREGlDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLtlal 1356
Cdd:COG4178 333 DRLAGFEEALEAAD-ALPEAASRIET-SEDGALALEDLTLRTPDG-RPLLEDLSLSLKPGERLLITGPSGSGKSTL---- 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1357 FRIIeaAG------GRISIDGvdiasmGLHMLrsrltIIPQDPVLFSGSLRINL---DPFEIKTDDEIWKALELSHLKSF 1427
Cdd:COG4178 406 LRAI--AGlwpygsGRIARPA------GARVL-----FLPQRPYLPLGTLREALlypATAEAFSDAELREALEAVGLGHL 472
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 939619619 1428 VKSLaaglnHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLET 1480
Cdd:COG4178 473 AERL-----DEEADWDQVLSLGEQQRLAFARLLLHKPDWLFLDEATSALDEEN 520
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1309-1486 |
3.65e-21 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 94.39 E-value: 3.65e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREglDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIAsmglhmlRSRLTI 1388
Cdd:COG1121 7 IELENLTVSYGG--RPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPR-------RARRRI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1389 --IPQ----DP--------VLFSGSL-RINLDPFEIKTDDE-IWKALE---LSHLKsfvkslaaglNHEIAEggenLSVG 1449
Cdd:COG1121 78 gyVPQraevDWdfpitvrdVVLMGRYgRRGLFRRPSRADREaVDEALErvgLEDLA----------DRPIGE----LSGG 143
|
170 180 190
....*....|....*....|....*....|....*...
gi 939619619 1450 QRQLVCLARALLRKTKVLVLDEATAAVDLET-DDLIQI 1486
Cdd:COG1121 144 QQQRVLLARALAQDPDLLLLDEPFAGVDAATeEALYEL 181
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
1309-1480 |
3.69e-21 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 92.08 E-value: 3.69e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLdlVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHmLRSRLTI 1388
Cdd:cd03230 1 IEVRNLSKRYGKKT--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEE-VKRRIGY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1389 IPQDPVLFSgslriNLDPFEiktddeiwkalelsHLKsfvkslaaglnheiaeggenLSVGQRQLVCLARALLRKTKVLV 1468
Cdd:cd03230 78 LPEEPSLYE-----NLTVRE--------------NLK--------------------LSGGMKQRLALAQALLHDPELLI 118
|
170
....*....|..
gi 939619619 1469 LDEATAAVDLET 1480
Cdd:cd03230 119 LDEPTSGLDPES 130
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1326-1477 |
4.35e-21 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 98.99 E-value: 4.35e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1326 LRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEaAGGRISIDGVDIASMG---LHMLRSRLTIIPQDPvlFsGSL-- 1400
Cdd:COG4172 302 VDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIP-SEGEIRFDGQDLDGLSrraLRPLRRRMQVVFQDP--F-GSLsp 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1401 ---------------RINLDPFEIktDDEIWKALELSHLKsfvkslAAGLN---HEiaeggenLSVGQRQLVCLARALLR 1462
Cdd:COG4172 378 rmtvgqiiaeglrvhGPGLSAAER--RARVAEALEEVGLD------PAARHrypHE-------FSGGQRQRIAIARALIL 442
|
170
....*....|....*
gi 939619619 1463 KTKVLVLDEATAAVD 1477
Cdd:COG4172 443 EPKLLVLDEPTSALD 457
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
1310-1474 |
5.64e-21 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 93.27 E-value: 5.64e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1310 EFQNFQVRYreGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMlRSRLTI- 1388
Cdd:cd03224 2 EVENLNAGY--GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE-RARAGIg 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1389 -IPQDPVLFSG-SLRINLD-----PFEIKTDDEIWKALEL-SHLKSFVKSLAAglnheiaeggeNLSVGQRQLVCLARAL 1460
Cdd:cd03224 79 yVPEGRRIFPElTVEENLLlgayaRRRAKRKARLERVYELfPRLKERRKQLAG-----------TLSGGEQQMLAIARAL 147
|
170
....*....|....
gi 939619619 1461 LRKTKVLVLDEATA 1474
Cdd:cd03224 148 MSRPKLLLLDEPSE 161
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
1310-1480 |
9.39e-21 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 93.02 E-value: 9.39e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1310 EFQNFQVRYREGlDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMG---LHMLRSRL 1386
Cdd:cd03256 2 EVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKgkaLRQLRRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1387 TIIPQDP-----------VLfSGSL------RINLDPFeikTDDEIWKALELshLKSFvkslaaGLNHEIAEGGENLSVG 1449
Cdd:cd03256 81 GMIFQQFnlierlsvlenVL-SGRLgrrstwRSLFGLF---PKEEKQRALAA--LERV------GLLDKAYQRADQLSGG 148
|
170 180 190
....*....|....*....|....*....|.
gi 939619619 1450 QRQLVCLARALLRKTKVLVLDEATAAVDLET 1480
Cdd:cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPAS 179
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
1325-1488 |
1.04e-20 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 98.25 E-value: 1.04e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTIIPQDPVLFSGSLRINL 1404
Cdd:PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNI 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1405 ---DPfeIKTDDEIWKALELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETD 1481
Cdd:PRK10789 410 algRP--DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTE 487
|
....*..
gi 939619619 1482 DliQIRH 1488
Cdd:PRK10789 488 H--QILH 492
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
649-853 |
1.07e-20 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 92.20 E-value: 1.07e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 649 MSIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK-----------LAYVPQQ 717
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRdvtgvpperrnIGMVFQD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 718 -AWIQNATVRDNILFGqTYDRKRYNKVIDACALRadidILSAGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADLYLLD 795
Cdd:cd03259 81 yALFPHLTVAENIAFG-LKLRGVPKAEIRARVRE----LLELVGLEGLLNRYPHeLSGGQQQRVALARALAREPSLLLLD 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 939619619 796 DPLSAVDAHVGKHIFEEVigpKGILAR--KSRVLVTHGVT-FLPQVDSIYVIKMGEISESG 853
Cdd:cd03259 156 EPLSALDAKLREELREEL---KELQRElgITTIYVTHDQEeALALADRIAVMNEGRIVQVG 213
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
649-858 |
1.34e-20 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 92.24 E-value: 1.34e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 649 MSIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAF-----LGEMEKLAGVVNTVGKLAYVP-------- 715
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLnrlndLIPGAPDEGEVLLDGKDIYDLdvdvlelr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 716 -------QQAWIQNATVRDNILFGQTYDRKRYNKVIDACALRAdidiLSAGDLTEIGE---KGINLSGGQKQRISLARAV 785
Cdd:cd03260 81 rrvgmvfQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEA----LRKAALWDEVKdrlHALGLSGGQQQRLCLARAL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 939619619 786 YSDADLYLLDDPLSAVDAhVGKHIFEEVIGPkgiLARKSR-VLVTHGvtfLPQV----DSIYVIKMGEISESGTFDQL 858
Cdd:cd03260 157 ANEPEVLLLDEPTSALDP-ISTAKIEELIAE---LKKEYTiVIVTHN---MQQAarvaDRTAFLLNGRLVEFGPTEQI 227
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1325-1477 |
1.58e-20 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 94.35 E-value: 1.58e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEA---AGGRISIDGVDIASMGLHMLR----SRLTIIPQDPvlfS 1397
Cdd:COG0444 20 AVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLKLSEKELRkirgREIQMIFQDP---M 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1398 GSL-------RINLDPFEI---KTDDEIW-KALEL----------SHLKSFvkslaaglNHEiaeggenLSVGQRQLVCL 1456
Cdd:COG0444 97 TSLnpvmtvgDQIAEPLRIhggLSKAEAReRAIELlervglpdpeRRLDRY--------PHE-------LSGGMRQRVMI 161
|
170 180
....*....|....*....|.
gi 939619619 1457 ARALLRKTKVLVLDEATAAVD 1477
Cdd:COG0444 162 ARALALEPKLLIADEPTTALD 182
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
650-848 |
2.19e-20 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 89.23 E-value: 2.19e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGvvntvgklayvpqQAWIQNATVRDNI 729
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSG-------------EILIDGKDIAKLP 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 730 LFgqtydrkrynkvidacALRADIDILSAgdlteigekginLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHvGKHI 809
Cdd:cd00267 68 LE----------------ELRRRIGYVPQ------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPA-SRER 118
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 939619619 810 FEEVIgpKGILARKSRVL-VTHGVTFLPQV-DSIYVIKMGE 848
Cdd:cd00267 119 LLELL--RELAEEGRTVIiVTHDPELAELAaDRVIVLKDGK 157
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
660-849 |
3.09e-20 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 90.99 E-value: 3.09e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 660 DEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK-------------LAYVPQQAWIQNATVR 726
Cdd:cd03248 26 DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKpisqyehkylhskVSLVGQEPVLFARSLQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 727 DNILFG-QTYDRKRYNKVIDACALRADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHv 805
Cdd:cd03248 106 DNIAYGlQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE- 184
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 939619619 806 GKHIFEEVIgpKGILARKSRVLVTHGVTFLPQVDSIYVIKMGEI 849
Cdd:cd03248 185 SEQQVQQAL--YDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
664-858 |
1.20e-19 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 89.74 E-value: 1.20e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVnTVG-------------KLAYVPQQAWI-QNATVRDNI 729
Cdd:COG1131 16 LDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEV-RVLgedvardpaevrrRIGYVPQEPALyPDLTVRENL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 730 -LFGQTYDrkrynkvIDACALRADID-ILSAGDLTEIGEKGI-NLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAhVG 806
Cdd:COG1131 95 rFFARLYG-------LPRKEARERIDeLLELFGLTDAADRKVgTLSGGMKQRLGLALALLHDPELLILDEPTSGLDP-EA 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 939619619 807 KHIFEEVIgpKGILARKSRVLV-THgvtFLPQV----DSIYVIKMGEISESGTFDQL 858
Cdd:COG1131 167 RRELWELL--RELAAEGKTVLLsTH---YLEEAerlcDRVAIIDKGRIVADGTPDEL 218
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
649-853 |
1.74e-19 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 87.37 E-value: 1.74e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 649 MSIENGEFSWGDEIT--LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK------------LAYV 714
Cdd:cd03247 1 LSINNVSFSYPEQEQqvLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVpvsdlekalsslISVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 715 PQQAWIQNATVRDNIlfgqtydrkrynkvidacalradidilsagdlteigekGINLSGGQKQRISLARAVYSDADLYLL 794
Cdd:cd03247 81 NQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVLL 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 939619619 795 DDPLSAVDAHVGKHIFEEVIgpkGILARKSRVLVTHGVTFLPQVDSIYVIKMGEISESG 853
Cdd:cd03247 123 DEPTVGLDPITERQLLSLIF---EVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
650-804 |
2.03e-19 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 91.67 E-value: 2.03e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSvvqafLGEMekLAG--------------VVNTVG----KL 711
Cdd:COG3839 5 ELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKST-----LLRM--IAGledptsgeiliggrDVTDLPpkdrNI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 712 AYVPQQ-AWIQNATVRDNILFGQtydrkRYNKVidacaLRADID--ILSAGDLTEIGE----KGINLSGGQKQRISLARA 784
Cdd:COG3839 78 AMVFQSyALYPHMTVYENIAFPL-----KLRKV-----PKAEIDrrVREAAELLGLEDlldrKPKQLSGGQRQRVALGRA 147
|
170 180
....*....|....*....|
gi 939619619 785 VYSDADLYLLDDPLSAVDAH 804
Cdd:COG3839 148 LVREPKVFLLDEPLSNLDAK 167
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
1310-1486 |
2.25e-19 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 88.36 E-value: 2.25e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1310 EFQNFQVRYREGLdlVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIAsmglhMLRSRLTII 1389
Cdd:cd03235 1 EVEDLTVSYGGHP--VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1390 PQ-------------DPVLFSGSLRINLDPFEIKTD----DEIWKALELSHLKsfvkslaaglNHEIAEggenLSVGQRQ 1452
Cdd:cd03235 74 PQrrsidrdfpisvrDVVLMGLYGHKGLFRRLSKADkakvDEALERVGLSELA----------DRQIGE----LSGGQQQ 139
|
170 180 190
....*....|....*....|....*....|....*
gi 939619619 1453 LVCLARALLRKTKVLVLDEATAAVDLET-DDLIQI 1486
Cdd:cd03235 140 RVLLARALVQDPDLLLLDEPFAGVDPKTqEDIYEL 174
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1309-1484 |
2.27e-19 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 88.79 E-value: 2.27e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDLV--LRGVSFNIQGGEKVGIVGRTGAGKSSLtLALFRIIEA-AGGRISIDGVDIASM---GLHML 1382
Cdd:cd03258 2 IELKNVSKVFGDTGGKVtaLKDVSLSVPKGEIFGIIGRSGAGKSTL-IRCINGLERpTSGSVLVDGTDLTLLsgkELRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1383 RSRLTIIPQDPVLFSGslRINLD----PFEI---KTDDEIWKALELSHLksfvkslaAGLNHEIAEGGENLSVGQRQLVC 1455
Cdd:cd03258 81 RRRIGMIFQHFNLLSS--RTVFEnvalPLEIagvPKAEIEERVLELLEL--------VGLEDKADAYPAQLSGGQKQRVG 150
|
170 180
....*....|....*....|....*....
gi 939619619 1456 LARALLRKTKVLVLDEATAAVDLETDDLI 1484
Cdd:cd03258 151 IARALANNPKVLLCDEATSALDPETTQSI 179
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
1309-1480 |
2.53e-19 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 88.32 E-value: 2.53e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLD--LVLRGVSFNIQGGEKVGIVGRTGAGKSSLtLALFRIIEAA-GGRISIDGVDIASMGLHML--- 1382
Cdd:cd03255 1 IELKNLSKTYGGGGEkvQALKGVSLSIEKGEFVAIVGPSGSGKSTL-LNILGGLDRPtSGEVRVDGTDISKLSEKELaaf 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1383 -RSRLTIIPQD---------------PVLFSGSLRinldpFEIKTddeiwKALELshLKSFvkSLAAGLNHEIAEggenL 1446
Cdd:cd03255 80 rRRHIGFVFQSfnllpdltalenvelPLLLAGVPK-----KERRE-----RAEEL--LERV--GLGDRLNHYPSE----L 141
|
170 180 190
....*....|....*....|....*....|....
gi 939619619 1447 SVGQRQLVCLARALLRKTKVLVLDEATAAVDLET 1480
Cdd:cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSET 175
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
664-832 |
4.99e-19 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 87.53 E-value: 4.99e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK--------LAYVPQQA----WiqnATVRDNILF 731
Cdd:cd03293 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEpvtgpgpdRGYVFQQDallpW---LTVLDNVAL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 732 GQtydrkRYNKVIDACALRADIDILSAGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIF 810
Cdd:cd03293 97 GL-----ELQGVPKAEARERAEELLELVGLSGFENAYPHqLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQ 171
|
170 180
....*....|....*....|....*
gi 939619619 811 EEVIGpkgiLARKSR---VLVTHGV 832
Cdd:cd03293 172 EELLD----IWRETGktvLLVTHDI 192
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1309-1480 |
5.15e-19 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 87.41 E-value: 5.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDLV--LRGVSFNIQGGEKVGIVGRTGAGKSSL--TLALfrIIEAAGGRISIDGVDIASMG---LHM 1381
Cdd:COG1136 5 LELRNLTKSYGTGEGEVtaLRGVSLSIEAGEFVAIVGPSGSGKSTLlnILGG--LDRPTSGEVLIDGQDISSLSereLAR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1382 LRSR-LTIIPQD---------------PVLFSGslrinLDPFEIKTD-DEIWKALELSHLksfvkslaagLNHEIAEgge 1444
Cdd:COG1136 83 LRRRhIGFVFQFfnllpeltalenvalPLLLAG-----VSRKERRERaRELLERVGLGDR----------LDHRPSQ--- 144
|
170 180 190
....*....|....*....|....*....|....*.
gi 939619619 1445 nLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLET 1480
Cdd:COG1136 145 -LSGGQQQRVAIARALVNRPKLILADEPTGNLDSKT 179
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
649-804 |
5.94e-19 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 88.18 E-value: 5.94e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 649 MSIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVnTVG--------------KLAYV 714
Cdd:COG1120 2 LEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEV-LLDgrdlaslsrrelarRIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 715 PQQ---AWiqNATVRDNILFG--------QTYDRKRYNKVIDAcalradidiLSAGDLTEIGEKGIN-LSGGQKQRISLA 782
Cdd:COG1120 81 PQEppaPF--GLTVRELVALGryphlglfGRPSAEDREAVEEA---------LERTGLEHLADRPVDeLSGGERQRVLIA 149
|
170 180
....*....|....*....|...
gi 939619619 783 RAVYSDADLYLLDDPLSAVD-AH 804
Cdd:COG1120 150 RALAQEPPLLLLDEPTSHLDlAH 172
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
664-868 |
6.42e-19 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 92.72 E-value: 6.42e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVV----QAF---LGEMeKLAGV-VNTVGK------LAYVPQQAWIQNATVRDNI 729
Cdd:PRK13657 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLInllqRVFdpqSGRI-LIDGTdIRTVTRaslrrnIAVVFQDAGLFNRSIEDNI 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 730 LFGQTydrKRYNKVIDACALRAD----IDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHV 805
Cdd:PRK13657 430 RVGRP---DATDEEMRAAAERAQahdfIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVET 506
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 939619619 806 G---KHIFEEVigpkgilaRKSRV--LVTHGVTFLPQVDSIYVIKMGEISESGTFDQLVKNKGAFADF 868
Cdd:PRK13657 507 EakvKAALDEL--------MKGRTtfIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAAL 566
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
664-832 |
6.99e-19 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 88.22 E-value: 6.99e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSV-------VQAFLGEMEkLAG--VVNTVGKLAYVPQQA----WiqnATVRDNIL 730
Cdd:COG1116 27 LDDVSLTVAAGEFVALVGPSGCGKSTLlrliaglEKPTSGEVL-VDGkpVTGPGPDRGVVFQEPallpW---LTVLDNVA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 731 FG-------QTYDRKRYNKVIDACALRADIDILSAgdlteigekgiNLSGGQKQRISLARAVYSDADLYLLDDPLSAVDA 803
Cdd:COG1116 103 LGlelrgvpKAERRERARELLELVGLAGFEDAYPH-----------QLSGGMRQRVAIARALANDPEVLLMDEPFGALDA 171
|
170 180 190
....*....|....*....|....*....|..
gi 939619619 804 HVGKHIFEEVIGpkgiLARKSR---VLVTHGV 832
Cdd:COG1116 172 LTRERLQDELLR----LWQETGktvLFVTHDV 199
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
657-805 |
1.68e-18 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 85.77 E-value: 1.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 657 SWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAG-------VVNTVG----KLAYVPQQ-AWIQNAT 724
Cdd:cd03301 9 RFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGriyiggrDVTDLPpkdrDIAMVFQNyALYPHMT 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 725 VRDNILFGQTYdRKRYNKVIDAcalradiDILSAGDLTEIGE----KGINLSGGQKQRISLARAVYSDADLYLLDDPLSA 800
Cdd:cd03301 89 VYDNIAFGLKL-RKVPKDEIDE-------RVREVAELLQIEHlldrKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160
|
....*
gi 939619619 801 VDAHV 805
Cdd:cd03301 161 LDAKL 165
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
1309-1488 |
1.69e-18 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 85.99 E-value: 1.69e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLD--LVLRGVSFNIQGGEKVGIVGRTGAGKSSLtlalFRII----EAAGGRISIDGVDIASmglhmL 1382
Cdd:cd03293 1 LEVRNVSKTYGGGGGavTALEDISLSVEEGEFVALVGPSGCGKSTL----LRIIagleRPTSGEVLVDGEPVTG-----P 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1383 RSRLTIIPQDPVLF---------SGSLRINLDPFEiKTDDEIWKALELSHLKSFvkslaagLNHEIAEggenLSVGQRQL 1453
Cdd:cd03293 72 GPDRGYVFQQDALLpwltvldnvALGLELQGVPKA-EARERAEELLELVGLSGF-------ENAYPHQ----LSGGMRQR 139
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 939619619 1454 VCLARALLRKTKVLVLDEATAAVDLET-----DDLIQIRH 1488
Cdd:cd03293 140 VALARALAVDPDVLLLDEPFSALDALTreqlqEELLDIWR 179
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
650-853 |
1.90e-18 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 84.41 E-value: 1.90e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVnTVG--------------KLAYVP 715
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI-LLDgkdlaslspkelarKIAYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 716 QqawiqnatvrdnilfgqtydrkrynkvidacalradidILSAGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADLYLL 794
Cdd:cd03214 80 Q--------------------------------------ALELLGLAHLADRPFNeLSGGERQRVLLARALAQEPPILLL 121
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 939619619 795 DDPLSAVDAHVGKHIFEEVIGpkgiLARKSR---VLVTHGVTFLPQV-DSIYVIKMGEISESG 853
Cdd:cd03214 122 DEPTSHLDIAHQIELLELLRR----LARERGktvVMVLHDLNLAARYaDRVILLKDGRIVAQG 180
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
649-861 |
2.03e-18 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 88.67 E-value: 2.03e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 649 MSIE--NGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAflgemekLAG--------------VVNT----- 707
Cdd:COG1118 1 MSIEvrNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRI-------IAGletpdsgrivlngrDLFTnlppr 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 708 ---VGklaYVPQQ-AWIQNATVRDNILFGQTyDRKRYNKVIDAcalRADiDILSAGDLTEIGEKGIN-LSGGQKQRISLA 782
Cdd:COG1118 74 errVG---FVFQHyALFPHMTVAENIAFGLR-VRPPSKAEIRA---RVE-ELLELVQLEGLADRYPSqLSGGQRQRVALA 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 783 RAVYSDADLYLLDDPLSAVDAHVGK-------HIFEEVigpkGIlarkSRVLVTH------GVTflpqvDSIYVIKMGEI 849
Cdd:COG1118 146 RALAVEPEVLLLDEPFGALDAKVRKelrrwlrRLHDEL----GG----TTVFVTHdqeealELA-----DRVVVMNQGRI 212
|
250
....*....|..
gi 939619619 850 SESGTFDQLVKN 861
Cdd:COG1118 213 EQVGTPDEVYDR 224
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
650-830 |
2.90e-18 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 84.87 E-value: 2.90e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK-------------LAYVPQ 716
Cdd:COG4619 2 ELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKplsampppewrrqVAYVPQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 717 Q-AWIQNaTVRDNILFGQTYDRKRYNKViDACALRADIDiLSAGDLteigEKGI-NLSGGQKQRISLARAVYSDADLYLL 794
Cdd:COG4619 82 EpALWGG-TVRDNLPFPFQLRERKFDRE-RALELLERLG-LPPDIL----DKPVeRLSGGERQRLALIRALLLQPDVLLL 154
|
170 180 190
....*....|....*....|....*....|....*...
gi 939619619 795 DDPLSAVDAHvGKHIFEEVIgpKGILARKSR--VLVTH 830
Cdd:COG4619 155 DEPTSALDPE-NTRRVEELL--REYLAEEGRavLWVSH 189
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1310-1474 |
3.29e-18 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 85.42 E-value: 3.29e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1310 EFQNFQVRYreGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMlRSRLTI- 1388
Cdd:COG0410 5 EVENLHAGY--GGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHR-IARLGIg 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1389 -IPQDPVLFSG-SLRINL--------DPFEIKTDDEiwKALEL-SHLKSFVKSLAAglnheiaeggeNLSVGQRQLVCLA 1457
Cdd:COG0410 82 yVPEGRRIFPSlTVEENLllgayarrDRAEVRADLE--RVYELfPRLKERRRQRAG-----------TLSGGEQQMLAIG 148
|
170
....*....|....*..
gi 939619619 1458 RALLRKTKVLVLDEATA 1474
Cdd:COG0410 149 RALMSRPKLLLLDEPSL 165
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
650-849 |
3.96e-18 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 83.42 E-value: 3.96e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSWGD--EITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVV-------NTVGK------LAYV 714
Cdd:cd03246 2 EVENVSFRYPGaePPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVrldgadiSQWDPnelgdhVGYL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 715 PQQAWIQNATVRDNILfgqtydrkrynkvidacalradidilsagdlteigekginlSGGQKQRISLARAVYSDADLYLL 794
Cdd:cd03246 82 PQDDELFSGSIAENIL-----------------------------------------SGGQRQRLGLARALYGNPRILVL 120
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 939619619 795 DDPLSAVDAHVGKHIFEEVIGPKgiLARKSRVLVTHGVTFLPQVDSIYVIKMGEI 849
Cdd:cd03246 121 DEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLASADRILVLEDGRV 173
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
655-861 |
4.53e-18 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 89.58 E-value: 4.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 655 EFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTV----------------GKLAYVPQQA 718
Cdd:COG1123 13 RYPGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGRISGEVlldgrdllelsealrgRRIGMVFQDP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 719 WIQ--NATVRDNILFGQtydrkRYNKVIDACALRADIDILSAGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADLYLLD 795
Cdd:COG1123 93 MTQlnPVTVGDQIAEAL-----ENLGLSRAEARARVLELLEAVGLERRLDRYPHqLSGGQRQRVAIAMALALDPDLLIAD 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 796 DPLSAVDAHVGKHIFEEVigpkGILAR---KSRVLVTHGVTFLPQV-DSIYVIKMGEISESGTFDQLVKN 861
Cdd:COG1123 168 EPTTALDVTTQAEILDLL----RELQRergTTVLLITHDLGVVAEIaDRVVVMDDGRIVEDGPPEEILAA 233
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
651-872 |
5.60e-18 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 84.91 E-value: 5.60e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 651 IENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG------------KLAYVPQQA 718
Cdd:COG4555 4 VENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGedvrkeprearrQIGVLPDER 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 719 WI-QNATVRDNI-LFGQTYDRKRynkviDACALRADiDILSAGDLTEIGEKGI-NLSGGQKQRISLARAVYSDADLYLLD 795
Cdd:COG4555 84 GLyDRLTVRENIrYFAELYGLFD-----EELKKRIE-ELIELLGLEEFLDRRVgELSTGMKKKVALARALVHDPKVLLLD 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 796 DPLSAVDAhVGKHIFEEVIgpKGILARKSRVLV-THGVTFLPQV-DSIYVIKMGEISESGTFDQLVKNKG------AFAD 867
Cdd:COG4555 158 EPTNGLDV-MARRLLREIL--RALKKEGKTVLFsSHIMQEVEALcDRVVILHKGKVVAQGSLDELREEIGeenledAFVA 234
|
....*
gi 939619619 868 FIIQH 872
Cdd:COG4555 235 LIGSE 239
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
664-849 |
6.02e-18 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 84.08 E-value: 6.02e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVqAFLGEMEKL-AGVVNTVGK-----------------LAYVPQQ-AWIQNAT 724
Cdd:cd03255 20 LKGVSLSIEKGEFVAIVGPSGSGKSTLL-NILGGLDRPtSGEVRVDGTdisklsekelaafrrrhIGFVFQSfNLLPDLT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 725 VRDNILFGQTYDRKRYNKvidaCALRAdIDILSAGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADLYLLDDPLSAVDA 803
Cdd:cd03255 99 ALENVELPLLLAGVPKKE----RRERA-EELLERVGLGDRLNHYPSeLSGGQQQRVAIARALANDPKIILADEPTGNLDS 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 939619619 804 HVGKHIFEevigpkgILARKSR------VLVTHGVTFLPQVDSIYVIKMGEI 849
Cdd:cd03255 174 ETGKEVME-------LLRELNKeagttiVVVTHDPELAEYADRIIELRDGKI 218
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
651-869 |
6.06e-18 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 84.69 E-value: 6.06e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 651 IENGEFSWGdEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK-----------LAYVPQQ-A 718
Cdd:cd03299 3 VENLSKDWK-EFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKditnlppekrdISYVPQNyA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 719 WIQNATVRDNILFG---QTYDRKRYNKVIDACALRADIDILsagdlteIGEKGINLSGGQKQRISLARAVYSDADLYLLD 795
Cdd:cd03299 82 LFPHMTVYKNIAYGlkkRKVDKKEIERKVLEIAEMLGIDHL-------LNRKPETLSGGEQQRVAIARALVVNPKILLLD 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 796 DPLSAVDAHVGKHIFEEVigpkGILARKSRVLVTHgVTF-----LPQVDSIYVIKMGEISESGTFDQLVKN--KGAFADF 868
Cdd:cd03299 155 EPFSALDVRTKEKLREEL----KKIRKEFGVTVLH-VTHdfeeaWALADKVAIMLNGKLIQVGKPEEVFKKpkNEFVAEF 229
|
.
gi 939619619 869 I 869
Cdd:cd03299 230 L 230
|
|
| ABC_6TM_exporters |
cd07346 |
Six-transmembrane helical domain of the ATP-binding cassette transporters; This family ... |
988-1279 |
7.96e-18 |
|
Six-transmembrane helical domain of the ATP-binding cassette transporters; This family represents a subunit of six transmembrane (TM) helices typically found in the ATP-binding cassette (ABC) transporters that function as exporters, which contain 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds and a various type of lipids. In addition to ABC exporters, ABC transporters include two classes of ABC importers, classified depending on details of their architecture and mechanism. Only the ABC exporters are included in this family. ABC transporters typically consist of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The sequences and structures of the TMDs are quite varied between the different type of transporters, suggesting chemical diversity of the translocated substrates, whereas NBDs are conserved among all ABC transporters. The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane. However, some ABC genes are organized as half-transporters, which must form either homodimers or heterodimers to form a functional unit. The ABC exporters play a role in multidrug resistance to antibiotics and anticancer agents, and mutations in these proteins have been shown to cause severe human diseases such as cystic fibrosis.
Pssm-ID: 349983 [Multi-domain] Cd Length: 292 Bit Score: 85.68 E-value: 7.96e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 988 IFLSVATLVLNFVFQAFQIgsnlWLTQWANDQNVAN-DTGLRDMYLGVYGAFGFGQVATNFFSSLAISlgclKCSQLLHQ 1066
Cdd:cd07346 1 LLLALLLLLLATALGLALP----LLTKLLIDDVIPAgDLSLLLWIALLLLLLALLRALLSYLRRYLAA----RLGQRVVF 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1067 TL---LYYNL-RWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIVV-ISLSTPIFLAVIVPIAFL 1141
Cdd:cd07346 73 DLrrdLFRHLqRLSLSFFDRNRTGDLMSRLTSDVDAVQNLVSSGLLQLLSDVLTLIGALVIlFYLNWKLTLVALLLLPLY 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1142 YYFAQRFYV---ATSRQLMrlESVSRspIYSHFSETVTGASTIRAYNVGDRFIEESDAKVDKNQVCKYPSVIANRWLAIR 1218
Cdd:cd07346 153 VLILRYFRRrirKASREVR--ESLAE--LSAFLQESLSGIRVVKAFAAEEREIERFREANRDLRDANLRAARLSALFSPL 228
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 939619619 1219 LEMVGNLIILFASLFA---VLGGQTNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERI 1279
Cdd:cd07346 229 IGLLTALGTALVLLYGgylVLQGSLTIGELVAFLAYLGMLFGPIQRLANLYNQLQQALASLERI 292
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1304-1486 |
9.48e-18 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 84.76 E-value: 9.48e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1304 PQEGRVEFQNFQVRYREGLD--LVLRGVSFNIQGGEKVGIVGRTGAGKSSLtlalFRII----EAAGGRISIDGVDIASM 1377
Cdd:COG1116 3 AAAPALELRGVSKRFPTGGGgvTALDDVSLTVAAGEFVALVGPSGCGKSTL----LRLIagleKPTSGEVLVDGKPVTGP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1378 GlhmlrSRLTIIPQDPVLF----------SGsLRI-NLDPFEIKtdDEIWKALELSHLKSFVKSLAaglnHEiaeggenL 1446
Cdd:COG1116 79 G-----PDRGVVFQEPALLpwltvldnvaLG-LELrGVPKAERR--ERARELLELVGLAGFEDAYP----HQ-------L 139
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 939619619 1447 SVGQRQLVCLARALLRKTKVLVLDEATAAVDLET-----DDLIQI 1486
Cdd:COG1116 140 SGGMRQRVAIARALANDPEVLLMDEPFGALDALTrerlqDELLRL 184
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
1309-1486 |
9.98e-18 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 82.09 E-value: 9.98e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYreGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDG--VDIASMGlHMLRSRL 1386
Cdd:cd03216 1 LELRGITKRF--GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGkeVSFASPR-DARRAGI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1387 TIIPQdpvlfsgslrinldpfeiktddeiwkalelshlksfvkslaaglnheiaeggenLSVGQRQLVCLARALLRKTKV 1466
Cdd:cd03216 78 AMVYQ------------------------------------------------------LSVGERQMVEIARALARNARL 103
|
170 180
....*....|....*....|.
gi 939619619 1467 LVLDEATAAVDL-ETDDLIQI 1486
Cdd:cd03216 104 LILDEPTAALTPaEVERLFKV 124
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
659-814 |
1.05e-17 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 83.30 E-value: 1.05e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 659 GDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK------------LAYVPQQ-AWIQNATV 725
Cdd:COG4133 13 GERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEpirdaredyrrrLAYLGHAdGLKPELTV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 726 RDNILF-----GQTYDRKRYNKVIDACALRADIDILSAgdlteigekgiNLSGGQKQRISLARAVYSDADLYLLDDPLSA 800
Cdd:COG4133 93 RENLRFwaalyGLRADREAIDEALEAVGLAGLADLPVR-----------QLSAGQKRRVALARLLLSPAPLWLLDEPFTA 161
|
170
....*....|....
gi 939619619 801 VDAHvGKHIFEEVI 814
Cdd:COG4133 162 LDAA-GVALLAELI 174
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
650-860 |
1.12e-17 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 84.09 E-value: 1.12e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG----------------KLAY 713
Cdd:cd03261 2 ELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGedisglseaelyrlrrRMGM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 714 VPQQawiqNA-----TVRDNILF--------GQTYDRKRYNKVIDACALRADIDILSAgdlteigekgiNLSGGQKQRIS 780
Cdd:cd03261 82 LFQS----GAlfdslTVFENVAFplrehtrlSEEEIREIVLEKLEAVGLRGAEDLYPA-----------ELSGGMKKRVA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 781 LARAVYSDADLYLLDDPLSAVDAhVGKHIFEEVIgpkgilaRKSR-------VLVTHGVTFLPQV-DSIYVIKMGEISES 852
Cdd:cd03261 147 LARALALDPELLLYDEPTAGLDP-IASGVIDDLI-------RSLKkelgltsIMVTHDLDTAFAIaDRIAVLYDGKIVAE 218
|
....*...
gi 939619619 853 GTFDQLVK 860
Cdd:cd03261 219 GTPEELRA 226
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1309-1480 |
1.56e-17 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 85.90 E-value: 1.56e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDLV--LRGVSFNIQGGEKVGIVGRTGAGKSslTLAlfRII----EAAGGRISIDGVDIASM---GL 1379
Cdd:COG1135 2 IELENLSKTFPTKGGPVtaLDDVSLTIEKGEIFGIIGYSGAGKS--TLI--RCInlleRPTSGSVLVDGVDLTALserEL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1380 HMLRSRLTIIPQDPVLFSgS----------LRI-NLDPFEIKTddeiwKALELshLKsFVkslaaGLNHEIAEGGENLSV 1448
Cdd:COG1135 78 RAARRKIGMIFQHFNLLS-SrtvaenvalpLEIaGVPKAEIRK-----RVAEL--LE-LV-----GLSDKADAYPSQLSG 143
|
170 180 190
....*....|....*....|....*....|..
gi 939619619 1449 GQRQLVCLARALLRKTKVLVLDEATAAVDLET 1480
Cdd:COG1135 144 GQKQRVGIARALANNPKVLLCDEATSALDPET 175
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
650-862 |
2.25e-17 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 82.77 E-value: 2.25e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSWGDEIT-LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVnTVG--------------KLAYV 714
Cdd:COG1122 2 ELENLSFSYPGGTPaLDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEV-LVDgkditkknlrelrrKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 715 PQQAWIQ--NATVRDNILFG---QTYDRKRynkvIDAcalRADiDILSAGDLTEIGEKGI-NLSGGQKQRISLARAVYSD 788
Cdd:COG1122 81 FQNPDDQlfAPTVEEDVAFGpenLGLPREE----IRE---RVE-EALELVGLEHLADRPPhELSGGQKQRVAIAGVLAME 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 789 ADLYLLDDPLSAVDAHVGKHIFEevigpkgILAR-----KSRVLVTHGVTFLPQV-DSIYVIKMGEISESGTFDQLVKNK 862
Cdd:COG1122 153 PEVLVLDEPTAGLDPRGRRELLE-------LLKRlnkegKTVIIVTHDLDLVAELaDRVIVLDDGRIVADGTPREVFSDY 225
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
650-861 |
2.60e-17 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 83.12 E-value: 2.60e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSWGD-EITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG-------------KLAYVP 715
Cdd:cd03295 2 EFENVTKRYGGgKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGedireqdpvelrrKIGYVI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 716 QQAWI-QNATVRDNI-----LFGqtYDRKRYNKvidacalRADiDILSAGDLTEIGEKG---INLSGGQKQRISLARAVY 786
Cdd:cd03295 82 QQIGLfPHMTVEENIalvpkLLK--WPKEKIRE-------RAD-ELLALVGLDPAEFADrypHELSGGQQQRVGVARALA 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 939619619 787 SDADLYLLDDPLSAVDAHVGKHIFEEVIGPKGILaRKSRVLVTHGV-TFLPQVDSIYVIKMGEISESGTFDQLVKN 861
Cdd:cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQEL-GKTIVFVTHDIdEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
650-849 |
2.66e-17 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 80.90 E-value: 2.66e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVV------------NTVGKLAYVPQQ 717
Cdd:cd03230 2 EVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIkvlgkdikkepeEVKRRIGYLPEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 718 A-WIQNATVRDNIlfgqtydrkrynkvidacalradidilsagdlteigekgiNLSGGQKQRISLARAVYSDADLYLLDD 796
Cdd:cd03230 82 PsLYENLTVRENL----------------------------------------KLSGGMKQRLALAQALLHDPELLILDE 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 939619619 797 PLSAVDAhVGKHIFEEVIgpKGILAR-KSRVLVTHGVTFLPQV-DSIYVIKMGEI 849
Cdd:cd03230 122 PTSGLDP-ESRREFWELL--RELKKEgKTILLSSHILEEAERLcDRVAILNNGRI 173
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
1309-1480 |
4.12e-17 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 81.69 E-value: 4.12e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLdLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIAsmGLH-----MLR 1383
Cdd:cd03292 1 IEFINVTKTYPNGT-AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVS--DLRgraipYLR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1384 SRLTIIPQDPVLFSgslriNLDPFEiktddEIWKALELSHL--KSFVKSLAA-----GLNHEIAEGGENLSVGQRQLVCL 1456
Cdd:cd03292 78 RKIGVVFQDFRLLP-----DRNVYE-----NVAFALEVTGVppREIRKRVPAalelvGLSHKHRALPAELSGGEQQRVAI 147
|
170 180
....*....|....*....|....
gi 939619619 1457 ARALLRKTKVLVLDEATAAVDLET 1480
Cdd:cd03292 148 ARAIVNSPTILIADEPTGNLDPDT 171
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
649-858 |
6.16e-17 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 84.37 E-value: 6.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 649 MSIE--NGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK-----------LAYVP 715
Cdd:PRK10851 1 MSIEiaNIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTdvsrlhardrkVGFVF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 716 QQ-AWIQNATVRDNILFGQTY--DRKRYNK-VIDACALRadidILSAGDLTEIGEK-GINLSGGQKQRISLARAVYSDAD 790
Cdd:PRK10851 81 QHyALFRHMTVFDNIAFGLTVlpRRERPNAaAIKAKVTQ----LLEMVQLAHLADRyPAQLSGGQKQRVALARALAVEPQ 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 939619619 791 LYLLDDPLSAVDAHVGK-------HIFEEVigpkgilaRKSRVLVTHGVTFLPQV-DSIYVIKMGEISESGTFDQL 858
Cdd:PRK10851 157 ILLLDEPFGALDAQVRKelrrwlrQLHEEL--------KFTSVFVTHDQEEAMEVaDRVVVMSQGNIEQAGTPDQV 224
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
649-858 |
7.22e-17 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 81.62 E-value: 7.22e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 649 MSIE--NGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKLA-----------YVP 715
Cdd:cd03296 1 MSIEvrNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDAtdvpvqernvgFVF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 716 QQ-AWIQNATVRDNILFGQTYDRKRYNKVIDACALRADiDILSAGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADLYL 793
Cdd:cd03296 81 QHyALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVH-ELLKLVQLDWLADRYPAqLSGGQRQRVALARALAVEPKVLL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 939619619 794 LDDPLSAVDAHVGKHIfeevigpKGILAR------KSRVLVTHGVTFLPQV-DSIYVIKMGEISESGTFDQL 858
Cdd:cd03296 160 LDEPFGALDAKVRKEL-------RRWLRRlhdelhVTTVFVTHDQEEALEVaDRVVVMNKGRIEQVGTPDEV 224
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1309-1477 |
1.02e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 81.96 E-value: 1.02e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTI 1388
Cdd:PRK13632 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1389 IPQDP-VLFSGslrinldpfeIKTDDEIWKALE-----LSHLKSFVKSLA--AGLNHEIAEGGENLSVGQRQLVCLARAL 1460
Cdd:PRK13632 88 IFQNPdNQFIG----------ATVEDDIAFGLEnkkvpPKKMKDIIDDLAkkVGMEDYLDKEPQNLSGGQKQRVAIASVL 157
|
170
....*....|....*..
gi 939619619 1461 LRKTKVLVLDEATAAVD 1477
Cdd:PRK13632 158 ALNPEIIIFDESTSMLD 174
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
1309-1484 |
1.06e-16 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 79.12 E-value: 1.06e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGlDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLtlalFRII----EAAGGRISIDGvdiasmglhmlRS 1384
Cdd:cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSL----FRALaglwPWGSGRIGMPE-----------GE 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1385 RLTIIPQDPVLFSGSLRinldpfeiktdDEI---WkalelshlksfvkslaaglnheiaegGENLSVGQRQLVCLARALL 1461
Cdd:cd03223 65 DLLFLPQRPYLPLGTLR-----------EQLiypW--------------------------DDVLSGGEQQRLAFARLLL 107
|
170 180
....*....|....*....|...
gi 939619619 1462 RKTKVLVLDEATAAVDLETDDLI 1484
Cdd:cd03223 108 HKPKFVFLDEATSALDEESEDRL 130
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
649-863 |
1.07e-16 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 85.54 E-value: 1.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 649 MSIENGEFSW-GDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK-------------LAYV 714
Cdd:PRK10790 341 IDIDNVSFAYrDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRplsslshsvlrqgVAMV 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 715 PQQAWIQNATVRDNILFGQTYDRKRYNKVIDACALRADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLL 794
Cdd:PRK10790 421 QQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILIL 500
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 939619619 795 DDPLSAVDAHVgkhifEEVIGPKGILARKSRVLV--THGVTFLPQVDSIYVIKMGEISESGTFDQLVKNKG 863
Cdd:PRK10790 501 DEATANIDSGT-----EQAIQQALAAVREHTTLVviAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQG 566
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
1323-1480 |
1.18e-16 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 80.84 E-value: 1.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1323 DLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIAsmGLHMLRSRLTIIPQDPVLF------ 1396
Cdd:cd03299 12 EFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKRDISYVPQNYALFphmtvy 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1397 ---SGSLRINLDP-FEIKTD-DEIWKALELSHLksfvkslaagLNHEIaeggENLSVGQRQLVCLARALLRKTKVLVLDE 1471
Cdd:cd03299 90 kniAYGLKKRKVDkKEIERKvLEIAEMLGIDHL----------LNRKP----ETLSGGEQQRVAIARALVVNPKILLLDE 155
|
....*....
gi 939619619 1472 ATAAVDLET 1480
Cdd:cd03299 156 PFSALDVRT 164
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
664-851 |
1.82e-16 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 80.09 E-value: 1.82e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAfLGEMEK-------LAGV-VNTVG----------KLAYVPQQA-WIQNAT 724
Cdd:COG1136 24 LRGVSLSIEAGEFVAIVGPSGSGKSTLLNI-LGGLDRptsgevlIDGQdISSLSerelarlrrrHIGFVFQFFnLLPELT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 725 VRDNILFGQTYDRKRYNKVIDacalRADiDILSAGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADLYLLDDPLSAVDA 803
Cdd:COG1136 103 ALENVALPLLLAGVSRKERRE----RAR-ELLERVGLGDRLDHRPSqLSGGQQQRVAIARALVNRPKLILADEPTGNLDS 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 939619619 804 HVGKHIFEevigpkgILARKSR------VLVTHGVTFLPQVDSIYVIKMGEISE 851
Cdd:COG1136 178 KTGEEVLE-------LLRELNRelgttiVMVTHDPELAARADRVIRLRDGRIVS 224
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1309-1490 |
2.12e-16 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 79.72 E-value: 2.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYR--EGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIAS--------MG 1378
Cdd:cd03266 2 ITADALTKRFRdvKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKepaearrrLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1379 LHM----LRSRLTIIPQdpVLFSGSLRinldpfeiktddeiwkALELSHLKSFVKSLAA--GLNHEIAEGGENLSVGQRQ 1452
Cdd:cd03266 82 FVSdstgLYDRLTAREN--LEYFAGLY----------------GLKGDELTARLEELADrlGMEELLDRRVGGFSTGMRQ 143
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 939619619 1453 LVCLARALLRKTKVLVLDEATAAVD-LETDDLIQ-IRHFC 1490
Cdd:cd03266 144 KVAIARALVHDPPVLLLDEPTTGLDvMATRALREfIRQLR 183
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
664-867 |
2.27e-16 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 84.49 E-value: 2.27e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSsvvqaflgemeklagvvnTVGKLAY------------------------------ 713
Cdd:COG5265 374 LKGVSFEVPAGKTVAIVGPSGAGKS------------------TLARLLFrfydvtsgrilidgqdirdvtqaslraaig 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 714 -VPQQAWIQNATVRDNILFGQT-YDRKRYNKVIDACALRADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADL 791
Cdd:COG5265 436 iVPQDTVLFNDTIAYNIAYGRPdASEEEVEAAARAAQIHDFIESLPDGYDTRVGERGLKLSGGEKQRVAIARTLLKNPPI 515
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 792 YLLDDPLSAVDAHVGKHIFEEvigpkgiLARKSR---VLV-THGVTFLPQVDSIYVIKMGEISESGTFDQLVKNKGAFAD 867
Cdd:COG5265 516 LIFDEATSALDSRTERAIQAA-------LREVARgrtTLViAHRLSTIVDADEILVLEAGRIVERGTHAELLAQGGLYAQ 588
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1309-1484 |
2.38e-16 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 82.16 E-value: 2.38e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDLV--LRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASM---GLHMLR 1383
Cdd:PRK11153 2 IELKNISKVFPQGGRTIhaLNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALsekELRKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1384 SRLTIIPQDPVLFSG---------SLRI-NLDPFEIKTD-DEIWKALELSHLKSFVKSlaaglnheiaeggeNLSVGQRQ 1452
Cdd:PRK11153 82 RQIGMIFQHFNLLSSrtvfdnvalPLELaGTPKAEIKARvTELLELVGLSDKADRYPA--------------QLSGGQKQ 147
|
170 180 190
....*....|....*....|....*....|..
gi 939619619 1453 LVCLARALLRKTKVLVLDEATAAVDLETDDLI 1484
Cdd:PRK11153 148 RVAIARALASNPKVLLCDEATSALDPATTRSI 179
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
1325-1477 |
2.40e-16 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 79.89 E-value: 2.40e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMlRSRLTII--PQDPVLFSG-SLR 1401
Cdd:cd03218 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK-RARLGIGylPQEASIFRKlTVE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1402 INLDPF--EIKTDDEIWKA-----LELSHLKSFVKSLAAGlnheiaeggenLSVGQRQLVCLARALLRKTKVLVLDEATA 1474
Cdd:cd03218 94 ENILAVleIRGLSKKEREEkleelLEEFHITHLRKSKASS-----------LSGGERRRVEIARALATNPKFLLLDEPFA 162
|
...
gi 939619619 1475 AVD 1477
Cdd:cd03218 163 GVD 165
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1311-1480 |
6.07e-16 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 82.81 E-value: 6.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1311 FQNFQVRYreGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSltlaLFRII----EAAGGRISID-GVDIASMglhmlrsr 1385
Cdd:COG0488 1 LENLSKSF--GGRPLLDDVSLSINPGDRIGLVGRNGAGKST----LLKILagelEPDSGEVSIPkGLRIGYL-------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1386 ltiiPQDPVLFSG---------------SLRINLDPFEIKTDDEIWKALELSHL------------KSFVKSLAAGLNHE 1438
Cdd:COG0488 67 ----PQEPPLDDDltvldtvldgdaelrALEAELEELEAKLAEPDEDLERLAELqeefealggweaEARAEEILSGLGFP 142
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 939619619 1439 IAEGG---ENLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLET 1480
Cdd:COG0488 143 EEDLDrpvSELSGGWRRRVALARALLSEPDLLLLDEPTNHLDLES 187
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
664-853 |
7.21e-16 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 78.32 E-value: 7.21e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK----------------LAYVPQQAwiQNA---- 723
Cdd:cd03257 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKdllklsrrlrkirrkeIQMVFQDP--MSSlnpr 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 724 -TVRDNILFGQtydRKRYNKVIDACALRADIDILSAGDLTE--IGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSA 800
Cdd:cd03257 99 mTIGEQIAEPL---RIHGKLSKKEARKEAVLLLLVGVGLPEevLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSA 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 801 VDAHVGKHIFEevigpkgILAR------KSRVLVTHGVTFLPQV-DSIYVIKMGEISESG 853
Cdd:cd03257 176 LDVSVQAQILD-------LLKKlqeelgLTLLFITHDLGVVAKIaDRVAVMYAGKIVEEG 228
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
1309-1485 |
7.70e-16 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 78.70 E-value: 7.70e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREglDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMG---LHMLRSR 1385
Cdd:cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSeaeLYRLRRR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1386 LTIIPQDPVLFSgSLRI------NLDPFEIKTDDEIwKALELSHLKsfvkslAAGLnheiaEGGEN-----LSVGQRQLV 1454
Cdd:cd03261 79 MGMLFQSGALFD-SLTVfenvafPLREHTRLSEEEI-REIVLEKLE------AVGL-----RGAEDlypaeLSGGMKKRV 145
|
170 180 190
....*....|....*....|....*....|....*
gi 939619619 1455 CLARALLRKTKVLVLDEATAAVD----LETDDLIQ 1485
Cdd:cd03261 146 ALARALALDPELLLYDEPTAGLDpiasGVIDDLIR 180
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
1309-1480 |
1.45e-15 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 77.18 E-value: 1.45e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYreGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDI--ASMGLHMLRSRL 1386
Cdd:cd03262 1 IEIKNLHKSF--GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLtdDKKNINELRQKV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1387 TIIPQDPVLFSgslriNLDPFEIKTDDEIW---------KALELSHLKSfvkslaAGLNHEIAEGGENLSVGQRQLVCLA 1457
Cdd:cd03262 79 GMVFQQFNLFP-----HLTVLENITLAPIKvkgmskaeaEERALELLEK------VGLADKADAYPAQLSGGQQQRVAIA 147
|
170 180
....*....|....*....|...
gi 939619619 1458 RALLRKTKVLVLDEATAAVDLET 1480
Cdd:cd03262 148 RALAMNPKVMLFDEPTSALDPEL 170
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1325-1478 |
1.55e-15 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 80.66 E-value: 1.55e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTIIPQDPvlfsgSLRINl 1404
Cdd:PRK09536 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDT-----SLSFE- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1405 dpFEIKTDDEIWKALELSHLKSFVKSLAAGLNHEIAEGG---------ENLSVGQRQLVCLARALLRKTKVLVLDEATAA 1475
Cdd:PRK09536 92 --FDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGvaqfadrpvTSLSGGERQRVLLARALAQATPVLLLDEPTAS 169
|
...
gi 939619619 1476 VDL 1478
Cdd:PRK09536 170 LDI 172
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
1309-1485 |
1.78e-15 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 77.73 E-value: 1.78e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDLVlRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTI 1388
Cdd:cd03295 1 IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1389 IPQDPVLF---SGSLRINLDP-----FEIKTDDEIWKALELSHLKSfvKSLAAGLNHEiaeggenLSVGQRQLVCLARAL 1460
Cdd:cd03295 80 VIQQIGLFphmTVEENIALVPkllkwPKEKIRERADELLALVGLDP--AEFADRYPHE-------LSGGQQQRVGVARAL 150
|
170 180
....*....|....*....|....*
gi 939619619 1461 LRKTKVLVLDEATAAVDLETDDLIQ 1485
Cdd:cd03295 151 AADPPLLLMDEPFGALDPITRDQLQ 175
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
651-848 |
2.17e-15 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 75.69 E-value: 2.17e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 651 IENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAG-------VVNTVG--------KLAYVP 715
Cdd:cd03229 3 LKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGsilidgeDLTDLEdelpplrrRIGMVF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 716 QQ-AWIQNATVRDNILFGqtydrkrynkvidacalradidilsagdlteigekginLSGGQKQRISLARAVYSDADLYLL 794
Cdd:cd03229 83 QDfALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPDVLLL 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 939619619 795 DDPLSAVDAHVGKHIFEEVigpKGILAR--KSRVLVTHGVTFLPQV-DSIYVIKMGE 848
Cdd:cd03229 125 DEPTSALDPITRREVRALL---KSLQAQlgITVVLVTHDLDEAARLaDRVVVLRDGK 178
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1325-1486 |
2.31e-15 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 80.83 E-value: 2.31e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMG-LHMLRSRLTIIPQDPVLFSG-SLRI 1402
Cdd:COG1129 19 ALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSpRDAQAAGIAIIHQELNLVPNlSVAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1403 NLdpF---EIKTDDEI-WKALElshlkSFVKSLAAGLNHEI---AEGGEnLSVGQRQLVCLARALLRKTKVLVLDEATAA 1475
Cdd:COG1129 99 NI--FlgrEPRRGGLIdWRAMR-----RRARELLARLGLDIdpdTPVGD-LSVAQQQLVEIARALSRDARVLILDEPTAS 170
|
170
....*....|..
gi 939619619 1476 VDL-ETDDLIQI 1486
Cdd:COG1129 171 LTErEVERLFRI 182
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
664-862 |
3.60e-15 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 76.43 E-value: 3.60e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSS-------VVQAFLGE------------MEKLAGVvntvgKLAYVPQQAWI-QNA 723
Cdd:cd03218 16 VNGVSLSVKQGEIVGLLGPNGAGKTTtfymivgLVKPDSGKilldgqditklpMHKRARL-----GIGYLPQEASIfRKL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 724 TVRDNI---LFGQTYDRKRYNKVIDAcalradidILSAGDLTEI-GEKGINLSGGQKQRISLARAVYSDADLYLLDDPLS 799
Cdd:cd03218 91 TVEENIlavLEIRGLSKKEREEKLEE--------LLEEFHITHLrKSKASSLSGGERRRVEIARALATNPKFLLLDEPFA 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 800 AVDAHVGKHIfeevigpKGILAR-KSR---VLVT-HGV--TfLPQVDSIYVIKMGEISESGTFDQLVKNK 862
Cdd:cd03218 163 GVDPIAVQDI-------QKIIKIlKDRgigVLITdHNVreT-LSITDRAYIIYEGKVLAEGTPEEIAANE 224
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
650-869 |
3.92e-15 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 76.51 E-value: 3.92e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK-LAYVP----------QQ- 717
Cdd:cd03300 2 ELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKdITNLPphkrpvntvfQNy 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 718 AWIQNATVRDNILFGQTYdRKRYNKVIDACALRAdidiLSAGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADLYLLDD 796
Cdd:cd03300 82 ALFPHLTVFENIAFGLRL-KKLPKAEIKERVAEA----LDLVQLEGYANRKPSqLSGGQQQRVAIARALVNEPKVLLLDE 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 797 PLSAVDAHVGKHIFEEvigpkgiLARKSRVLvthGVTF----------LPQVDSIYVIKMGEISESGTFDQLVKN-KGAF 865
Cdd:cd03300 157 PLGALDLKLRKDMQLE-------LKRLQKEL---GITFvfvthdqeeaLTMSDRIAVMNKGKIQQIGTPEEIYEEpANRF 226
|
....*
gi 939619619 866 -ADFI 869
Cdd:cd03300 227 vADFI 231
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
1325-1486 |
3.99e-15 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 76.32 E-value: 3.99e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHmLRSRLTIIP--QDPVLFSG---- 1398
Cdd:cd03219 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPH-EIARLGIGRtfQIPRLFPEltvl 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1399 -----------SLRINLDPF---EIKTDDEIWKALELSHLksfvkslaAGLNHEIAEggeNLSVGQRQLVCLARALLRKT 1464
Cdd:cd03219 94 envmvaaqartGSGLLLARArreEREARERAEELLERVGL--------ADLADRPAG---ELSYGQQRRLEIARALATDP 162
|
170 180
....*....|....*....|...
gi 939619619 1465 KVLVLDEATAAVDL-ETDDLIQI 1486
Cdd:cd03219 163 KLLLLDEPAAGLNPeETEELAEL 185
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
664-858 |
4.04e-15 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 75.93 E-value: 4.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK--------------LAYVPQ-QAWIQNATVRDN 728
Cdd:cd03224 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRditglppheraragIGYVPEgRRIFPELTVEEN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 729 ILFGqTYDRKRynkvidaCALRADIDILSA--GDLTEI-GEKGINLSGGQKQRISLARAVYSDADLYLLDDP---LSAVd 802
Cdd:cd03224 96 LLLG-AYARRR-------AKRKARLERVYElfPRLKERrKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPsegLAPK- 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 939619619 803 ahVGKHIFEEVIGpkgiLARK--SRVLVTHGVTFLPQV-DSIYVIKMGEISESGTFDQL 858
Cdd:cd03224 167 --IVEEIFEAIRE----LRDEgvTILLVEQNARFALEIaDRAYVLERGRVVLEGTAAEL 219
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
1316-1477 |
4.11e-15 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 76.33 E-value: 4.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1316 VRYREGlDLVLRgVSFNIQGGEKVGIVGRTGAGKSSLtLAL---FriIEAAGGRISIDGVDIASMGLHmlrSR-LTIIPQ 1391
Cdd:COG3840 7 LTYRYG-DFPLR-FDLTIAAGERVAILGPSGAGKSTL-LNLiagF--LPPDSGRILWNGQDLTALPPA---ERpVSMLFQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1392 DPVLFSG-SLRIN----LDPfeiktddeiwkALELSHL-KSFVKSLAA--GLNHEIAEGGENLSVGQRQLVCLARALLRK 1463
Cdd:COG3840 79 ENNLFPHlTVAQNiglgLRP-----------GLKLTAEqRAQVEQALErvGLAGLLDRLPGQLSGGQRQRVALARCLVRK 147
|
170
....*....|....
gi 939619619 1464 TKVLVLDEATAAVD 1477
Cdd:COG3840 148 RPILLLDEPFSALD 161
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
1326-1485 |
5.41e-15 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 75.83 E-value: 5.41e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1326 LRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSR----LTIIPQDPVLFSGSLR 1401
Cdd:cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRnrysVAYAAQKPWLLNATVE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1402 INLdPFEIKTDDEIWKAL-ELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLE- 1479
Cdd:cd03290 97 ENI-TFGSPFNKQRYKAVtDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHl 175
|
....*.
gi 939619619 1480 TDDLIQ 1485
Cdd:cd03290 176 SDHLMQ 181
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
650-830 |
5.50e-15 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 78.22 E-value: 5.50e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQA---FL----GEMEkLAG-VVNTV--GK--LAYVPQQ 717
Cdd:COG3842 7 ELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMiagFEtpdsGRIL-LDGrDVTGLppEKrnVGMVFQD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 718 AwiqnA-----TVRDNILFGQTYdRKRYNKVIDAcalRADiDILSAGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADL 791
Cdd:COG3842 86 Y----AlfphlTVAENVAFGLRM-RGVPKAEIRA---RVA-ELLELVGLEGLADRYPHqLSGGQQQRVALARALAPEPRV 156
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 939619619 792 YLLDDPLSAVDAHVGKHIFEEVigpKGILAR--KSRVLVTH 830
Cdd:COG3842 157 LLLDEPLSALDAKLREEMREEL---RRLQRElgITFIYVTH 194
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
673-805 |
6.55e-15 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 75.41 E-value: 6.55e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 673 KGSLVALVGTVGSGKSSVVQAFLGeMEKLAG---VVNTV---------------GKLAYVPQQ-AWIQNATVRDNILFGq 733
Cdd:cd03297 22 NEEVTGIFGASGAGKSTLLRCIAG-LEKPDGgtiVLNGTvlfdsrkkinlppqqRKIGLVFQQyALFPHLNVRENLAFG- 99
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 939619619 734 tYDRKRYNKVIDacalRADiDILSAGDLTEIGEKGI-NLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHV 805
Cdd:cd03297 100 -LKRKRNREDRI----SVD-ELLDLLGLDHLLNRYPaQLSGGEKQRVALARALAAQPELLLLDEPFSALDRAL 166
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
664-854 |
7.50e-15 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 75.14 E-value: 7.50e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG-------------KLAYVPQQAWIQNATVRDNIl 730
Cdd:cd03369 24 LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGidistipledlrsSLTIIPQDPTLFSGTIRSNL- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 731 fgqtydrKRYNKVidacalrADIDILSAgdlTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVgKHIF 810
Cdd:cd03369 103 -------DPFDEY-------SDEEIYGA---LRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT-DALI 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 939619619 811 EEVIgpKGILARKSRVLVTHGVTFLPQVDSIYVIKMGEISESGT 854
Cdd:cd03369 165 QKTI--REEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1315-1477 |
8.00e-15 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 75.52 E-value: 8.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1315 QVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTIIPQDPV 1394
Cdd:PRK10247 12 NVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1395 LFSGSLRINLD-PFEI--KTDDEiwkalelshlKSFVKSLAA-GLNHEIAEGGEN-LSVGQRQLVCLARALLRKTKVLVL 1469
Cdd:PRK10247 92 LFGDTVYDNLIfPWQIrnQQPDP----------AIFLDDLERfALPDTILTKNIAeLSGGEKQRISLIRNLQFMPKVLLL 161
|
....*...
gi 939619619 1470 DEATAAVD 1477
Cdd:PRK10247 162 DEITSALD 169
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
648-804 |
8.43e-15 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 78.34 E-value: 8.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 648 PMSIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG-------------KLAYV 714
Cdd:PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGddvealsaraasrRVASV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 715 PQQAWIQ-NATVRDNILFGQTYDRKRYN-------KVIDACALRADIDILSAGDLTEigekginLSGGQKQRISLARAVY 786
Cdd:PRK09536 83 PQDTSLSfEFDVRQVVEMGRTPHRSRFDtwtetdrAAVERAMERTGVAQFADRPVTS-------LSGGERQRVLLARALA 155
|
170
....*....|....*...
gi 939619619 787 SDADLYLLDDPLSAVDAH 804
Cdd:PRK09536 156 QATPVLLLDEPTASLDIN 173
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1309-1477 |
8.44e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 76.43 E-value: 8.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDlVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDG--VDIASMGLHMLRSRL 1386
Cdd:PRK13636 6 LKVEELNYNYSDGTH-ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGkpIDYSRKGLMKLRESV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1387 TIIPQDP--VLFSGSL--RINLDPFEIK-TDDEIWKALELSHLKSFVKSLAAGLNHEiaeggenLSVGQRQLVCLARALL 1461
Cdd:PRK13636 85 GMVFQDPdnQLFSASVyqDVSFGAVNLKlPEDEVRKRVDNALKRTGIEHLKDKPTHC-------LSFGQKKRVAIAGVLV 157
|
170
....*....|....*.
gi 939619619 1462 RKTKVLVLDEATAAVD 1477
Cdd:PRK13636 158 MEPKVLVLDEPTAGLD 173
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
382-865 |
9.51e-15 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 79.99 E-value: 9.51e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 382 LAAAQTFILGQYFHRMFIVGLRIRTALINAIYRKALRISNSTKKESTVGEIVNlmavdaqRF-MELTTYLNMIwsaPLQI 460
Cdd:TIGR00957 1014 LGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVN-------RFsKELDTVDSMI---PPVI 1083
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 461 GLALYFLWQQLGPSVLAGLAVMI--ILIPVNGVIASRIKTYQI---RQMKyKDERVKL------MNEVLSGIKVLKLYAW 529
Cdd:TIGR00957 1084 KMFMGSLFNVIGALIVILLATPIaaVIIPPLGLLYFFVQRFYVassRQLK-RLESVSRspvyshFNETLLGVSVIRAFEE 1162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 530 EPSFEKQV-LDIRDKEIA---TLRSTAYLNAGTSFLWSCapflvsLVTFATYVLIDENNVLDATKTFVSLSLFNILRFPL 605
Cdd:TIGR00957 1163 QERFIHQSdLKVDENQKAyypSIVANRWLAVRLECVGNC------IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYL 1236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 606 TMLPMLITNLVQTQVSVNRINKFLNSEELDPNSVLHD---SSKPHPMSIENGEFSW----GDEITLRNINIEVKKGSLVA 678
Cdd:TIGR00957 1237 NWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETappSGWPPRGRVEFRNYCLryreDLDLVLRHINVTIHGGEKVG 1316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 679 LVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG-------------KLAYVPQQAWIQNATVRDNI-LFGQTYDRKRYnKVI 744
Cdd:TIGR00957 1317 IVGRTGAGKSSLTLGLFRINESAEGEIIIDGlniakiglhdlrfKITIIPQDPVLFSGSLRMNLdPFSQYSDEEVW-WAL 1395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 745 DACALRADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHI-------FEEVigpk 817
Cdd:TIGR00957 1396 ELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIqstirtqFEDC---- 1471
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 939619619 818 gilarkSRVLVTHGVTFLPQVDSIYVIKMGEISESGTFDQLVKNKGAF 865
Cdd:TIGR00957 1472 ------TVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIF 1513
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
1315-1484 |
1.13e-14 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 74.32 E-value: 1.13e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1315 QVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTIIPQDPV 1394
Cdd:TIGR01189 5 NLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHENILYLGHLPGL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1395 LFSGSLRINLD---PFEIKTDDEIWKALELSHLKSFVKSLAAglnheiaeggeNLSVGQRQLVCLARALLRKTKVLVLDE 1471
Cdd:TIGR01189 85 KPELSALENLHfwaAIHGGAQRTIEDALAAVGLTGFEDLPAA-----------QLSAGQQRRLALARLWLSRRPLWILDE 153
|
170
....*....|...
gi 939619619 1472 ATAAVDLETDDLI 1484
Cdd:TIGR01189 154 PTTALDKAGVALL 166
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
664-802 |
1.22e-14 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 76.07 E-value: 1.22e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK----------LAYVPQQA---WIQNATVRDNIL 730
Cdd:PRK15056 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQptrqalqknlVAYVPQSEevdWSFPVLVEDVVM 102
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 939619619 731 FGQ-------TYDRKRYNKVIDACALRADidiLSAGDLTEIGEkginLSGGQKQRISLARAVYSDADLYLLDDPLSAVD 802
Cdd:PRK15056 103 MGRyghmgwlRRAKKRDRQIVTAALARVD---MVEFRHRQIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVD 174
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
1309-1479 |
1.32e-14 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 74.54 E-value: 1.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLdlVLRGVSFNIQGGeKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHmLRSRLTI 1388
Cdd:cd03264 1 LQLENLTKRYGKKR--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQK-LRRRIGY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1389 IPQDPVLFSG-SLRINLDPFEI-------KTDDEIWKALELSHLKSFVKSLAAGLnheiaeggenlSVGQRQLVCLARAL 1460
Cdd:cd03264 77 LPQEFGVYPNfTVREFLDYIAWlkgipskEVKARVDEVLELVNLGDRAKKKIGSL-----------SGGMRRRVGIAQAL 145
|
170
....*....|....*....
gi 939619619 1461 LRKTKVLVLDEATAAVDLE 1479
Cdd:cd03264 146 VGDPSILIVDEPTAGLDPE 164
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
1321-1487 |
1.66e-14 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 74.14 E-value: 1.66e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1321 GLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIasmGLHMLRSRLTII-PQD---PVLf 1396
Cdd:PRK13539 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI---DDPDVAEACHYLgHRNamkPAL- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1397 sgSLRINLdpfeiktddEIWKALELSHLKSFVKSLAA-GLNHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAA 1475
Cdd:PRK13539 89 --TVAENL---------EFWAAFLGGEELDIAAALEAvGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA 157
|
170
....*....|....*.
gi 939619619 1476 VDLETD----DLIQIR 1487
Cdd:PRK13539 158 LDAAAValfaELIRAH 173
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1309-1491 |
3.76e-14 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 73.97 E-value: 3.76e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLdlVLRGVSFNIQGGEKVGIVGRTGAGKSSL-TLALFRIIEAAGGRISI-----DGVDI-------- 1374
Cdd:COG1119 4 LELRNVTVRRGGKT--ILDDISWTVKPGEHWAILGPNGAGKSTLlSLITGDLPPTYGNDVRLfgerrGGEDVwelrkrig 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1375 -ASMGLHM-LRSRLTIIpqDPVL--FSGSLRI--NLDPFEIKTDDEIWKALELSHLKsfvkslaaglNHEIAEggenLSV 1448
Cdd:COG1119 82 lVSPALQLrFPRDETVL--DVVLsgFFDSIGLyrEPTDEQRERARELLELLGLAHLA----------DRPFGT----LSQ 145
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 939619619 1449 GQRQLVCLARALLRKTKVLVLDEATAAVDLE-TDDLIQ-IRHFCH 1491
Cdd:COG1119 146 GEQRRVLIARALVKDPELLILDEPTAGLDLGaRELLLAlLDKLAA 190
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1315-1478 |
4.05e-14 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 74.04 E-value: 4.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1315 QVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTIIPQDPV 1394
Cdd:PRK13548 7 NLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1395 L-FSGS----LRINLDPF---EIKTDDEIWKALE---LSHLKSfvKSLAAglnheiaeggenLSVGQRQLVCLARALLR- 1462
Cdd:PRK13548 87 LsFPFTveevVAMGRAPHglsRAEDDALVAAALAqvdLAHLAG--RDYPQ------------LSGGEQQRVQLARVLAQl 152
|
170 180
....*....|....*....|.
gi 939619619 1463 -----KTKVLVLDEATAAVDL 1478
Cdd:PRK13548 153 wepdgPPRWLLLDEPTSALDL 173
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1325-1484 |
4.56e-14 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 73.97 E-value: 4.56e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLtlalFRIIeaAG------GRISIDGVDIASMGLHMlRSRLtI--IPQDPVL- 1395
Cdd:COG1101 21 ALDGLNLTIEEGDFVTVIGSNGAGKSTL----LNAI--AGslppdsGSILIDGKDVTKLPEYK-RAKY-IgrVFQDPMMg 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1396 ------------------FSGSLRINLDpfeiKTDDEIWKALelshlksfVKSLAAGLNHEIAEGGENLSVGQRQLVCLA 1457
Cdd:COG1101 93 tapsmtieenlalayrrgKRRGLRRGLT----KKRRELFREL--------LATLGLGLENRLDTKVGLLSGGQRQALSLL 160
|
170 180
....*....|....*....|....*..
gi 939619619 1458 RALLRKTKVLVLDEATAAVDLETDDLI 1484
Cdd:COG1101 161 MATLTKPKLLLLDEHTAALDPKTAALV 187
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1304-1477 |
6.59e-14 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 73.53 E-value: 6.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1304 PQEGRVEFQNFQVRYreGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIE-----AAGGRISIDGVDI--AS 1376
Cdd:COG1117 7 TLEPKIEVRNLNVYY--GDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMNDlipgaRVEGEILLDGEDIydPD 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1377 MGLHMLRSRLTIIPQDPVLFSGS--------LRINldpfEIKTDDEIWKALElshlksfvKSL-AAGLNHEIA----EGG 1443
Cdd:COG1117 85 VDVVELRRRVGMVFQKPNPFPKSiydnvaygLRLH----GIKSKSELDEIVE--------ESLrKAALWDEVKdrlkKSA 152
|
170 180 190
....*....|....*....|....*....|....
gi 939619619 1444 ENLSVGQRQLVCLARALLRKTKVLVLDEATAAVD 1477
Cdd:COG1117 153 LGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 186
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
1326-1487 |
6.82e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 73.93 E-value: 6.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1326 LRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHM--LRSRLTIIPQDP--VLFS---- 1397
Cdd:PRK13637 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLsdIRKKVGLVFQYPeyQLFEetie 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1398 -----GSLRINLDPFEIKtdDEIWKALELshlksfvkslaAGLNHEIAEGGE--NLSVGQRQLVCLARALLRKTKVLVLD 1470
Cdd:PRK13637 103 kdiafGPINLGLSEEEIE--NRVKRAMNI-----------VGLDYEDYKDKSpfELSGGQKRRVAIAGVVAMEPKILILD 169
|
170
....*....|....*....
gi 939619619 1471 EATAAVDLETDDLI--QIR 1487
Cdd:PRK13637 170 EPTAGLDPKGRDEIlnKIK 188
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1310-1477 |
7.86e-14 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 76.28 E-value: 7.86e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1310 EFQNFQVRY--REGL-------DLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIeAAGGRISIDGvdiasMGLH 1380
Cdd:PRK15134 277 DVEQLQVAFpiRKGIlkrtvdhNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDG-----QPLH 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1381 ------ML--RSRLTIIPQDPvlfSGSLRINLDPFEIktddeIWKALELSHlksfvKSLAAGLNHE-----IAEGG---- 1443
Cdd:PRK15134 351 nlnrrqLLpvRHRIQVVFQDP---NSSLNPRLNVLQI-----IEEGLRVHQ-----PTLSAAQREQqviavMEEVGldpe 417
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 939619619 1444 ------ENLSVGQRQLVCLARALLRKTKVLVLDEATAAVD 1477
Cdd:PRK15134 418 trhrypAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
662-861 |
1.18e-13 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 73.06 E-value: 1.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 662 ITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG-----------------KLAYVPQQ-AWIQNA 723
Cdd:cd03294 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGqdiaamsrkelrelrrkKISMVFQSfALLPHR 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 724 TVRDNILFG---QTYDRK-RYNKVIDAcalradidiLSAGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADLYLLDDPL 798
Cdd:cd03294 118 TVLENVAFGlevQGVPRAeREERAAEA---------LELVGLEGWEHKYPDeLSGGMQQRVGLARALAVDPDILLMDEAF 188
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 939619619 799 SAVDAHVGKHIFEEVIGpkgiLARKSR---VLVTH--------GvtflpqvDSIYVIKMGEISESGTFDQLVKN 861
Cdd:cd03294 189 SALDPLIRREMQDELLR----LQAELQktiVFITHdldealrlG-------DRIAIMKDGRLVQVGTPEEILTN 251
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1325-1477 |
1.22e-13 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 72.37 E-value: 1.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLtlalFRII----EAAGGRISIDGVDIASMGLHMlRSRLTI--IPQDPVLFSG 1398
Cdd:COG1137 18 VVKDVSLEVNQGEIVGLLGPNGAGKTTT----FYMIvglvKPDSGRIFLDGEDITHLPMHK-RARLGIgyLPQEASIFRK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1399 -----SLRI-----NLDPFEIKTD-DEIWKALELSHLKsfvKSLAAGLNheiaeGGEnlsvgqRQLVCLARALLRKTKVL 1467
Cdd:COG1137 93 ltvedNILAvlelrKLSKKEREERlEELLEEFGITHLR---KSKAYSLS-----GGE------RRRVEIARALATNPKFI 158
|
170
....*....|
gi 939619619 1468 VLDEATAAVD 1477
Cdd:COG1137 159 LLDEPFAGVD 168
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
1310-1490 |
1.27e-13 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 71.36 E-value: 1.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1310 EFQNFQVRYREGLdlVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLAL-------FRiieaAGGRISIDGVDIAsmGLHML 1382
Cdd:COG4136 3 SLENLTITLGGRP--LLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIagtlspaFS----ASGEVLLNGRRLT--ALPAE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1383 RSRLTIIPQDPVLFS-----GSLRINLdPFEIKT---DDEIWKALElshlksfvkslAAGL----NHEIAEggenLSVGQ 1450
Cdd:COG4136 75 QRRIGILFQDDLLFPhlsvgENLAFAL-PPTIGRaqrRARVEQALE-----------EAGLagfaDRDPAT----LSGGQ 138
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 939619619 1451 RQLVCLARALLRKTKVLVLDEATAAVDLETDDliQIRHFC 1490
Cdd:COG4136 139 RARVALLRALLAEPRALLLDEPFSKLDAALRA--QFREFV 176
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1309-1480 |
1.44e-13 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 73.98 E-value: 1.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYreGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLtlaLfRII----EAAGGRISIDGVDIASMGLHmlRS 1384
Cdd:COG3842 6 LELENVSKRY--GDVTALDDVSLSIEPGEFVALLGPSGCGKTTL---L-RMIagfeTPDSGRILLDGRDVTGLPPE--KR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1385 RLTIIPQDPVLFS----------GsLRI-NLDPFEIKtdDEIWKALELSHLKSFVKSLAaglnHEiaeggenLSVGQRQL 1453
Cdd:COG3842 78 NVGMVFQDYALFPhltvaenvafG-LRMrGVPKAEIR--ARVAELLELVGLEGLADRYP----HQ-------LSGGQQQR 143
|
170 180
....*....|....*....|....*..
gi 939619619 1454 VCLARALLRKTKVLVLDEATAAVDLET 1480
Cdd:COG3842 144 VALARALAPEPRVLLLDEPLSALDAKL 170
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
664-803 |
1.59e-13 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 72.20 E-value: 1.59e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKL--------AYVPQQ----AWIqnaTVRDNILF 731
Cdd:COG4525 23 LQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPvtgpgadrGVVFQKdallPWL---NVLDNVAF 99
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 939619619 732 GQtydrkRYNKVIDA-CALRADiDILSAGDLTEIGEKGI-NLSGGQKQRISLARAVYSDADLYLLDDPLSAVDA 803
Cdd:COG4525 100 GL-----RLRGVPKAeRRARAE-ELLALVGLADFARRRIwQLSGGMRQRVGIARALAADPRFLLMDEPFGALDA 167
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1307-1471 |
1.59e-13 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 73.95 E-value: 1.59e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1307 GRVEFQNFQVRYreGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLtlaLfRII----EAAGGRISIDGVDIASM----- 1377
Cdd:COG3839 2 ASLELENVSKSY--GGVEALKDIDLDIEDGEFLVLLGPSGCGKSTL---L-RMIagleDPTSGEILIGGRDVTDLppkdr 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1378 GLHMlrsrltiIPQDPVLF----------SGsLRI-NLDPFEIKTD-DEIWKALELSHLksfvkslaagLNHEIAEggen 1445
Cdd:COG3839 76 NIAM-------VFQSYALYphmtvyeniaFP-LKLrKVPKAEIDRRvREAAELLGLEDL----------LDRKPKQ---- 133
|
170 180
....*....|....*....|....*.
gi 939619619 1446 LSVGQRQLVCLARALLRKTKVLVLDE 1471
Cdd:COG3839 134 LSGGQRQRVALGRALVREPKVFLLDE 159
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
664-860 |
1.85e-13 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 71.76 E-value: 1.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKLAYVPQQAWI--------QNA--------TVRD 727
Cdd:COG1124 21 LKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKAFrrrvqmvfQDPyaslhprhTVDR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 728 NI-----LFGQTYDRKRYNKVIDACALRADIdilsagdLTEIGEKginLSGGQKQRISLARAVYSDADLYLLDDPLSAVD 802
Cdd:COG1124 101 ILaeplrIHGLPDREERIAELLEQVGLPPSF-------LDRYPHQ---LSGGQRQRVAIARALILEPELLLLDEPTSALD 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 939619619 803 AHVGKHI---FEEVIGPKGIlarkSRVLVTHG---VTFLpqVDSIYVIKMGEISESGTFDQLVK 860
Cdd:COG1124 171 VSVQAEIlnlLKDLREERGL----TYLFVSHDlavVAHL--CDRVAVMQNGRIVEELTVADLLA 228
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1325-1486 |
1.90e-13 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 71.99 E-value: 1.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLtlalFRII----EAAGGRISIDGVDIASMGLH------MLRS--------RL 1386
Cdd:COG0411 19 AVDDVSLEVERGEIVGLIGPNGAGKTTL----FNLItgfyRPTSGRILFDGRDITGLPPHriarlgIARTfqnprlfpEL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1387 T-----IIPQDPVLFSGSLRINLDPF-----EIKTDDEIWKALELSHLKSFVKSLAAglnheiaeggeNLSVGQRQLVCL 1456
Cdd:COG0411 95 TvlenvLVAAHARLGRGLLAALLRLPrarreEREARERAEELLERVGLADRADEPAG-----------NLSYGQQRRLEI 163
|
170 180 190
....*....|....*....|....*....|.
gi 939619619 1457 ARALLRKTKVLVLDEATAAVDL-ETDDLIQI 1486
Cdd:COG0411 164 ARALATEPKLLLLDEPAAGLNPeETEELAEL 194
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
1326-1478 |
2.04e-13 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 73.07 E-value: 2.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1326 LRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIAS---MGLHMLRSRLTIIPQDPVlfsGSL-- 1400
Cdd:PRK11308 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKadpEAQKLLRQKIQIVFQNPY---GSLnp 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1401 -----RINLDPFEIKTDdeiwkaleLSHLKSFVKSLA----AGLNHEIAEGGENL-SVGQRQLVCLARALLRKTKVLVLD 1470
Cdd:PRK11308 108 rkkvgQILEEPLLINTS--------LSAAERREKALAmmakVGLRPEHYDRYPHMfSGGQRQRIAIARALMLDPDVVVAD 179
|
....*...
gi 939619619 1471 EATAAVDL 1478
Cdd:PRK11308 180 EPVSALDV 187
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
1309-1477 |
2.23e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 72.08 E-value: 2.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDlVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTI 1388
Cdd:PRK13647 5 IEVEDLHFRYKDGTK-ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1389 IPQDP--VLFS---------GSLRINLDPFEIKTDDEiwKALELSHLKSFVKslaaglnheiaEGGENLSVGQRQLVCLA 1457
Cdd:PRK13647 84 VFQDPddQVFSstvwddvafGPVNMGLDKDEVERRVE--EALKAVRMWDFRD-----------KPPYHLSYGQKKRVAIA 150
|
170 180
....*....|....*....|
gi 939619619 1458 RALLRKTKVLVLDEATAAVD 1477
Cdd:PRK13647 151 GVLAMDPDVIVLDEPMAYLD 170
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
1309-1478 |
2.39e-13 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 71.11 E-value: 2.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYreGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLtlalFRII----EAAGGRISIDGVDIASMGLHmlRS 1384
Cdd:cd03300 1 IELENVSKFY--GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTL----LRLIagfeTPTSGEILLDGKDITNLPPH--KR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1385 RLTIIPQDPVLF---------SGSLRI-NLDPFEIKtdDEIWKALELSHLKSFvkslaagLNHEIAEggenLSVGQRQLV 1454
Cdd:cd03300 73 PVNTVFQNYALFphltvfeniAFGLRLkKLPKAEIK--ERVAEALDLVQLEGY-------ANRKPSQ----LSGGQQQRV 139
|
170 180
....*....|....*....|....
gi 939619619 1455 CLARALLRKTKVLVLDEATAAVDL 1478
Cdd:cd03300 140 AIARALVNEPKVLLLDEPLGALDL 163
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
1325-1477 |
2.67e-13 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 71.46 E-value: 2.67e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMlRSRLTI--IPQDPVLFSG-SLR 1401
Cdd:PRK10895 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA-RARRGIgyLPQEASIFRRlSVY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1402 INLDP-FEIKTD----------DEIWKALELSHLKSFVkslaaglnheiaegGENLSVGQRQLVCLARALLRKTKVLVLD 1470
Cdd:PRK10895 97 DNLMAvLQIRDDlsaeqredraNELMEEFHIEHLRDSM--------------GQSLSGGERRRVEIARALAANPKFILLD 162
|
....*..
gi 939619619 1471 EATAAVD 1477
Cdd:PRK10895 163 EPFAGVD 169
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
1325-1491 |
2.98e-13 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 70.82 E-value: 2.98e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVD--------IASMGLhMLRSRLTIIPQDPVLF 1396
Cdd:cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVpwkrrkkfLRRIGV-VFGQKTQLWWDLPVID 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1397 SGSL--RI-NLDPFEIKTD-DEIWKALELSH-LKSFVKslaaglnheiaeggeNLSVGQRQLVCLARALLRKTKVLVLDE 1471
Cdd:cd03267 115 SFYLlaAIyDLPPARFKKRlDELSELLDLEElLDTPVR---------------QLSLGQRMRAEIAAALLHEPEILFLDE 179
|
170 180
....*....|....*....|
gi 939619619 1472 ATAAVDLETDDliQIRHFCH 1491
Cdd:cd03267 180 PTIGLDVVAQE--NIRNFLK 197
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
650-862 |
3.00e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 71.56 E-value: 3.00e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSWGDEIT--LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK------LAYVPQQAWI- 720
Cdd:PRK13632 9 KVENVSFSYPNSENnaLKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGItiskenLKEIRKKIGIi 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 721 -QN-------ATVRDNILFG---QTYDRKRYNKVIDACALRADIDILsagdlteIGEKGINLSGGQKQRISLARAVYSDA 789
Cdd:PRK13632 89 fQNpdnqfigATVEDDIAFGlenKKVPPKKMKDIIDDLAKKVGMEDY-------LDKEPQNLSGGQKQRVAIASVLALNP 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 939619619 790 DLYLLDDPLSAVDAHvGKHIFEEVIGPKGILARKSRVLVTHGVTFLPQVDSIYVIKMGEISESGTFDQLVKNK 862
Cdd:PRK13632 162 EIIIFDESTSMLDPK-GKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
657-861 |
4.52e-13 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 70.51 E-value: 4.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 657 SWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAfLGEMEKLAGVVNTVGKLA----------------YVPQQAWI 720
Cdd:PRK09493 10 HFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRC-INKLEEITSGDLIVDGLKvndpkvderlirqeagMVFQQFYL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 721 -QNATVRDNILFGQTYDRKrynkvidacALRADIDILSAGDLTEIG-EKGIN-----LSGGQKQRISLARAVYSDADLYL 793
Cdd:PRK09493 89 fPHLTALENVMFGPLRVRG---------ASKEEAEKQARELLAKVGlAERAHhypseLSGGQQQRVAIARALAVKPKLML 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 939619619 794 LDDPLSAVDAHVgKHifeEVIGPKGILARK--SRVLVTHGVTFLPQVDS-IYVIKMGEISESGTFDQLVKN 861
Cdd:PRK09493 160 FDEPTSALDPEL-RH---EVLKVMQDLAEEgmTMVIVTHEIGFAEKVASrLIFIDKGRIAEDGDPQVLIKN 226
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
650-834 |
5.06e-13 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 69.87 E-value: 5.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKLAYVPQQAWIQ-------- 721
Cdd:cd03262 2 EIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINElrqkvgmv 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 722 --------NATVRDNILFGQTYDRKRYNKVIDACALRAdidilsagdLTEIG--EKG----INLSGGQKQRISLARAVYS 787
Cdd:cd03262 82 fqqfnlfpHLTVLENITLAPIKVKGMSKAEAEERALEL---------LEKVGlaDKAdaypAQLSGGQQQRVAIARALAM 152
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 939619619 788 DADLYLLDDPLSAVDAHVGKhifeEVIGPKGILARKSR--VLVTHGVTF 834
Cdd:cd03262 153 NPKVMLFDEPTSALDPELVG----EVLDVMKDLAEEGMtmVVVTHEMGF 197
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
1309-1477 |
5.24e-13 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 70.45 E-value: 5.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYreGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLtlalFRII----EAAGGRISIDGVDIASMGL----- 1379
Cdd:cd03296 3 IEVRNVSKRF--GDFVALDDVSLDIPSGELVALLGPSGSGKTTL----LRLIagleRPDSGTILFGGEDATDVPVqernv 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1380 ------HMLRSRLTIIpqDPVLFSgsLRI---NLDPFEIKTDDEIWKALELSHLKSFVKSLAAglnheiaeggeNLSVGQ 1450
Cdd:cd03296 77 gfvfqhYALFRHMTVF--DNVAFG--LRVkprSERPPEAEIRAKVHELLKLVQLDWLADRYPA-----------QLSGGQ 141
|
170 180
....*....|....*....|....*..
gi 939619619 1451 RQLVCLARALLRKTKVLVLDEATAAVD 1477
Cdd:cd03296 142 RQRVALARALAVEPKVLLLDEPFGALD 168
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
664-858 |
5.48e-13 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 73.40 E-value: 5.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVV----NTVGKLA------------YVPQQAWIQ-NA--T 724
Cdd:COG1123 281 VDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSIlfdgKDLTKLSrrslrelrrrvqMVFQDPYSSlNPrmT 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 725 VRDNILFGQtydrkRYNKVIDACALRADI-DILSAGDLTE------IGEkginLSGGQKQRISLARAVYSDADLYLLDDP 797
Cdd:COG1123 361 VGDIIAEPL-----RLHGLLSRAERRERVaELLERVGLPPdladryPHE----LSGGQRQRVAIARALALEPKLLILDEP 431
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 939619619 798 LSAVDAHVGKHI---FEEvigpkgiLARKSR---VLVTHGVTFLPQV-DSIYVIKMGEISESGTFDQL 858
Cdd:COG1123 432 TSALDVSVQAQIlnlLRD-------LQRELGltyLFISHDLAVVRYIaDRVAVMYDGRIVEDGPTEEV 492
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
1322-1480 |
6.68e-13 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 68.61 E-value: 6.68e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1322 LDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLH-MLRSRLTIIPQDP----VLF 1396
Cdd:cd03215 12 VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRdAIRAGIAYVPEDRkregLVL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1397 SGSLRINldpfeiktddeiwkaLELSHLksfvkslaaglnheiaeggenLSVGQRQLVCLARALLRKTKVLVLDEATAAV 1476
Cdd:cd03215 92 DLSVAEN---------------IALSSL---------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGV 135
|
....
gi 939619619 1477 DLET 1480
Cdd:cd03215 136 DVGA 139
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1325-1477 |
7.46e-13 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 72.74 E-value: 7.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDG--VDIAS------MGLHML---RSRLTIIPQDP 1393
Cdd:COG1129 267 VVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGkpVRIRSprdairAGIAYVpedRKGEGLVLDLS 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1394 VL----------FSGSLRINldpfeiktddeiwKALELSHLKSFVKSL---AAGLNHEIAeggeNLSVGQRQLVCLARAL 1460
Cdd:COG1129 347 IRenitlasldrLSRGGLLD-------------RRRERALAEEYIKRLrikTPSPEQPVG----NLSGGNQQKVVLAKWL 409
|
170
....*....|....*..
gi 939619619 1461 LRKTKVLVLDEATAAVD 1477
Cdd:COG1129 410 ATDPKVLILDEPTRGID 426
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
1309-1477 |
7.75e-13 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 69.23 E-value: 7.75e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREglDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDG--VDIASmglhmlRSRL 1386
Cdd:cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGkpLDIAA------RNRI 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1387 TIIP-----------QDPVLFSGSLRiNLDPFEIKTDDEIW-KALELSHLKSfvKSLaaglnheiaeggENLSVGQRQLV 1454
Cdd:cd03269 73 GYLPeerglypkmkvIDQLVYLAQLK-GLKKEEARRRIDEWlERLELSEYAN--KRV------------EELSKGNQQKV 137
|
170 180
....*....|....*....|...
gi 939619619 1455 CLARALLRKTKVLVLDEATAAVD 1477
Cdd:cd03269 138 QFIAAVIHDPELLILDEPFSGLD 160
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
650-849 |
7.93e-13 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 69.21 E-value: 7.93e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSWGDEIT-LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKLA----------YVPQQA 718
Cdd:cd03226 1 RIENISFSYKKGTEiLDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIkakerrksigYVMQDV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 719 WIQ--NATVRDNILFGqtydrkryNKVIDACALRADiDILSAGDLTEIGEKG-INLSGGQKQRISLARAVYSDADLYLLD 795
Cdd:cd03226 81 DYQlfTDSVREELLLG--------LKELDAGNEQAE-TVLKDLDLYALKERHpLSLSGGQKQRLAIAAALLSGKDLLIFD 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 939619619 796 DPLSAVDAH----VGKHIfeevigpkGILAR--KSRVLVTHGVTFLPQV-DSIYVIKMGEI 849
Cdd:cd03226 152 EPTSGLDYKnmerVGELI--------RELAAqgKAVIVITHDYEFLAKVcDRVLLLANGAI 204
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
1309-1477 |
9.54e-13 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 68.82 E-value: 9.54e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYreGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASM-----GLHMLR 1383
Cdd:cd03301 1 VELENVTKRF--GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLppkdrDIAMVF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1384 SRLTIIPQ----DPVLFSGSLRiNLDPFEIKTD-DEIWKALELSHLksfvkslaagLNHEIAEggenLSVGQRQLVCLAR 1458
Cdd:cd03301 79 QNYALYPHmtvyDNIAFGLKLR-KVPKDEIDERvREVAELLQIEHL----------LDRKPKQ----LSGGQRQRVALGR 143
|
170
....*....|....*....
gi 939619619 1459 ALLRKTKVLVLDEATAAVD 1477
Cdd:cd03301 144 AIVREPKVFLMDEPLSNLD 162
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
664-853 |
1.04e-12 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 69.10 E-value: 1.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKLAYVPQ-QAWIQ-NATVRDNILFGQTY---DRK 738
Cdd:cd03220 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGlGGGFNpELTGRENIYLNGRLlglSRK 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 739 RYNKVIDACAlradidilsagDLTEIGE------KgiNLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAH----VGKH 808
Cdd:cd03220 118 EIDEKIDEII-----------EFSELGDfidlpvK--TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAfqekCQRR 184
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 939619619 809 IFEEVIGPKGIlarksrVLVTHGVTFLPQV-DSIYVIKMGEISESG 853
Cdd:cd03220 185 LRELLKQGKTV------ILVSHDPSSIKRLcDRALVLEKGKIRFDG 224
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
650-845 |
1.41e-12 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 66.70 E-value: 1.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNT--VGKLAYVPQqawiqnatvrd 727
Cdd:cd03221 2 ELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWgsTVKIGYFEQ----------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 728 nilfgqtydrkrynkvidacalradidilsagdlteigekginLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGK 807
Cdd:cd03221 71 -------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIE 107
|
170 180 190
....*....|....*....|....*....|....*....
gi 939619619 808 HIFEEVIGPKGILarksrVLVTHGVTFLPQV-DSIYVIK 845
Cdd:cd03221 108 ALEEALKEYPGTV-----ILVSHDRYFLDQVaTKIIELE 141
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
649-841 |
1.79e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 69.30 E-value: 1.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 649 MSIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAfLGEMEKLAGVVNTVGKLAYVPQQAWIQNATV--- 725
Cdd:PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKC-LNRMNELESEVRVEGRVEFFNQNIYERRVNLnrl 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 726 ---------RDNILFGQTYDRKRYNKVIDACALRADID-----ILSAGDL-----TEIGEKGINLSGGQKQRISLARAVY 786
Cdd:PRK14258 87 rrqvsmvhpKPNLFPMSVYDNVAYGVKIVGWRPKLEIDdivesALKDADLwdeikHKIHKSALDLSGGQQQRLCIARALA 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 939619619 787 SDADLYLLDDPLSAVDAHVGKHIfEEVIGPKGILARKSRVLVTHGvtfLPQVDSI 841
Cdd:PRK14258 167 VKPKVLLMDEPCFGLDPIASMKV-ESLIQSLRLRSELTMVIVSHN---LHQVSRL 217
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
1325-1479 |
2.01e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 68.79 E-value: 2.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIE-----AAGGRISIDGVDIASMGLHMLRSRLTIIPQDPVLFSgs 1399
Cdd:PRK14247 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIElypeaRVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP-- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1400 lriNLDPFE-----------IKTDDEIWK----ALELSHLKSFVKslaaglNHEIAEGGEnLSVGQRQLVCLARALLRKT 1464
Cdd:PRK14247 96 ---NLSIFEnvalglklnrlVKSKKELQErvrwALEKAQLWDEVK------DRLDAPAGK-LSGGQQQRLCIARALAFQP 165
|
170
....*....|....*
gi 939619619 1465 KVLVLDEATAAVDLE 1479
Cdd:PRK14247 166 EVLLADEPTANLDPE 180
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1325-1487 |
2.01e-12 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 71.62 E-value: 2.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIA--------SMGLHMlrsrltiIPQDPVLF 1396
Cdd:PRK15439 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCArltpakahQLGIYL-------VPQEPLLF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1397 SG-SLRINLdPFEIKTddeiwKALELSHLKSFVKSLAAGLNHEIAEGgeNLSVGQRQLVCLARALLRKTKVLVLDEATAA 1475
Cdd:PRK15439 99 PNlSVKENI-LFGLPK-----RQASMQKMKQLLAALGCQLDLDSSAG--SLEVADRQIVEILRGLMRDSRILILDEPTAS 170
|
170
....*....|....
gi 939619619 1476 VD-LETDDLI-QIR 1487
Cdd:PRK15439 171 LTpAETERLFsRIR 184
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
1280-1477 |
2.66e-12 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 68.82 E-value: 2.66e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1280 KEYGETKQEAPWELEQDKNKPknwpqegrvefqnfQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRI 1359
Cdd:cd03294 8 KIFGKNPQKAFKLLAKGKSKE--------------EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1360 IEAAGGRISIDGVDIASMG---LHMLRS-RLTIIPQDPVLFSGslRINLD----PFEIKTDDE------IWKALELSHLK 1425
Cdd:cd03294 74 IEPTSGKVLIDGQDIAAMSrkeLRELRRkKISMVFQSFALLPH--RTVLEnvafGLEVQGVPRaereerAAEALELVGLE 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 939619619 1426 SFvkslaagLNHEIAEggenLSVGQRQLVCLARALLRKTKVLVLDEATAAVD 1477
Cdd:cd03294 152 GW-------EHKYPDE----LSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1325-1480 |
2.68e-12 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 68.23 E-value: 2.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLtLALfriieAAG------GRISIDGVDIASM---GLHMLRSRL--------T 1387
Cdd:COG4181 27 ILKGISLEVEAGESVAIVGASGSGKSTL-LGL-----LAGldrptsGTVRLAGQDLFALdedARARLRARHvgfvfqsfQ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1388 IIPQ----DPVLFSGSLRINLDPFEIKTDdeiwkALE---LSHLksfvkslaagLNHEIAEggenLSVGQRQLVCLARAL 1460
Cdd:COG4181 101 LLPTltalENVMLPLELAGRRDARARARA-----LLErvgLGHR----------LDHYPAQ----LSGGEQQRVALARAF 161
|
170 180
....*....|....*....|
gi 939619619 1461 LRKTKVLVLDEATAAVDLET 1480
Cdd:COG4181 162 ATEPAILFADEPTGNLDAAT 181
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
1287-1484 |
3.06e-12 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 69.12 E-value: 3.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1287 QEAPWEL----EQDKNKPKNWPQEGRVEFQNFQVRYREgldlVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEA 1362
Cdd:cd03291 14 DEGFGELlekaKQENNDRKHSSDDNNLFFSNLCLVGAP----VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1363 AGGRISIDGvdiasmglhmlrsRLTIIPQDPVLFSGSLRINLdPFEIKTDDEIWKA-LELSHLKSFVKSLAAGLNHEIAE 1441
Cdd:cd03291 90 SEGKIKHSG-------------RISFSSQFSWIMPGTIKENI-IFGVSYDEYRYKSvVKACQLEEDITKFPEKDNTVLGE 155
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 939619619 1442 GGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLI 1484
Cdd:cd03291 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEI 198
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1305-1477 |
3.57e-12 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 68.50 E-value: 3.57e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1305 QEGRVEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRS 1384
Cdd:PRK13635 2 KEEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1385 RLTIIPQDP------------VLFSgslrinLDPFEIKTDDEIWK---ALELSHLKSFvkslaagLNHEIAeggeNLSVG 1449
Cdd:PRK13635 82 QVGMVFQNPdnqfvgatvqddVAFG------LENIGVPREEMVERvdqALRQVGMEDF-------LNREPH----RLSGG 144
|
170 180
....*....|....*....|....*...
gi 939619619 1450 QRQLVCLARALLRKTKVLVLDEATAAVD 1477
Cdd:PRK13635 145 QKQRVAIAGVLALQPDIIILDEATSMLD 172
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
648-830 |
4.66e-12 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 68.68 E-value: 4.66e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 648 PMSIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG------------KLAYVP 715
Cdd:PRK13537 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGepvpsrarharqRVGVVP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 716 QQAWIQ-NATVRDNIL-FGQTYD------RKRYNKVIDACALRADIDilsagdlTEIGEkginLSGGQKQRISLARAVYS 787
Cdd:PRK13537 87 QFDNLDpDFTVRENLLvFGRYFGlsaaaaRALVPPLLEFAKLENKAD-------AKVGE----LSGGMKRRLTLARALVN 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 939619619 788 DADLYLLDDPLSAVDAHVGKHIFEEVigpKGILAR-KSRVLVTH 830
Cdd:PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERL---RSLLARgKTILLTTH 196
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
649-854 |
4.71e-12 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 68.12 E-value: 4.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 649 MSIENGEFSWGD--EITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVnTVGKLAYVPQQAW------- 719
Cdd:PRK13635 6 IRVEHISFRYPDaaTYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI-TVGGMVLSEETVWdvrrqvg 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 720 --IQN-------ATVRDNILFG---QTYDRKRYNKVIDAcALRaDIDILSAGDlteigEKGINLSGGQKQRISLARAVYS 787
Cdd:PRK13635 85 mvFQNpdnqfvgATVQDDVAFGlenIGVPREEMVERVDQ-ALR-QVGMEDFLN-----REPHRLSGGQKQRVAIAGVLAL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 788 DADLYLLDDPLSAVDAhVGKhifEEVIGPKGILARKSRVLV---THGVTFLPQVDSIYVIKMGEISESGT 854
Cdd:PRK13635 158 QPDIIILDEATSMLDP-RGR---REVLETVRQLKEQKGITVlsiTHDLDEAAQADRVIVMNKGEILEEGT 223
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1329-1478 |
5.24e-12 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 70.65 E-value: 5.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1329 VSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMG---LHMLRSRLTIIPQDPVlfsgslrINLD 1405
Cdd:PRK10261 343 VSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSpgkLQALRRDIQFIFQDPY-------ASLD 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1406 PFEiKTDDEIWKALELSHL---KSFVKSLA-----AGLNHEIA-EGGENLSVGQRQLVCLARALLRKTKVLVLDEATAAV 1476
Cdd:PRK10261 416 PRQ-TVGDSIMEPLRVHGLlpgKAAAARVAwllerVGLLPEHAwRYPHEFSGGQRQRICIARALALNPKVIIADEAVSAL 494
|
..
gi 939619619 1477 DL 1478
Cdd:PRK10261 495 DV 496
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
651-797 |
5.68e-12 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 70.09 E-value: 5.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 651 IENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVnTVG---KLAYVPQQawiQ-----N 722
Cdd:COG0488 318 LEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTV-KLGetvKIGYFDQH---QeeldpD 393
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 939619619 723 ATVRDNIlfGQTYDRKRYNKVIDACAlradiDILSAGD--LTEIGekgiNLSGGQKQRISLARAVYSDADLYLLDDP 797
Cdd:COG0488 394 KTVLDEL--RDGAPGGTEQEVRGYLG-----RFLFSGDdaFKPVG----VLSGGEKARLALAKLLLSPPNVLLLDEP 459
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
657-830 |
6.11e-12 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 68.70 E-value: 6.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 657 SWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGklAYVPQQAWIQNA------------- 723
Cdd:PRK13536 50 SYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLG--VPVPARARLARArigvvpqfdnldl 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 724 --TVRDNILFGQTYDRKRYNKVIDACALRADIDILSAGDLTEIGEkginLSGGQKQRISLARAVYSDADLYLLDDPLSAV 801
Cdd:PRK13536 128 efTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSD----LSGGMKRRLTLARALINDPQLLILDEPTTGL 203
|
170 180 190
....*....|....*....|....*....|
gi 939619619 802 DAHVGKHIFEEVigpKGILAR-KSRVLVTH 830
Cdd:PRK13536 204 DPHARHLIWERL---RSLLARgKTILLTTH 230
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
1317-1478 |
6.49e-12 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 67.51 E-value: 6.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1317 RYREGL------DLVlRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIaSMGLHMLRS-RLTII 1389
Cdd:PRK15112 15 RYRTGWfrrqtvEAV-KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL-HFGDYSYRSqRIRMI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1390 PQDPV-----------LFSGSLRINLDPFEIKTDDEIWKALELSHLksfVKSLAAGLNHEIAEggenlsvGQRQLVCLAR 1458
Cdd:PRK15112 93 FQDPStslnprqrisqILDFPLRLNTDLEPEQREKQIIETLRQVGL---LPDHASYYPHMLAP-------GQKQRLGLAR 162
|
170 180
....*....|....*....|
gi 939619619 1459 ALLRKTKVLVLDEATAAVDL 1478
Cdd:PRK15112 163 ALILRPKVIIADEALASLDM 182
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
649-830 |
6.53e-12 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 66.54 E-value: 6.53e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 649 MSIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK---------LAYVPQQAW 719
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKpldiaarnrIGYLPEERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 720 I-QNATVRDNIL-FGQTYDRKRYnkviDAcalRADID-ILSAGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADLYLLD 795
Cdd:cd03269 81 LyPKMKVIDQLVyLAQLKGLKKE----EA---RRRIDeWLERLELSEYANKRVEeLSKGNQQKVQFIAAVIHDPELLILD 153
|
170 180 190
....*....|....*....|....*....|....*..
gi 939619619 796 DPLSAVDAhVGKHIFEEVIGPkgiLARKSR--VLVTH 830
Cdd:cd03269 154 EPFSGLDP-VNVELLKDVIRE---LARAGKtvILSTH 186
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
1333-1477 |
6.88e-12 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 66.36 E-value: 6.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1333 IQGGEKVGIVGRTGAGKSSL--TLALFRIieAAGGRISIDGVDIASMglHMLRSRLTIIPQDPVLFS-----GSLRINLD 1405
Cdd:cd03298 21 FAQGEITAIVGPSGSGKSTLlnLIAGFET--PQSGRVLINGVDVTAA--PPADRPVSMLFQENNLFAhltveQNVGLGLS 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 939619619 1406 PfEIKTDDEIWKAlelshlksfVKSLAA--GLNHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVD 1477
Cdd:cd03298 97 P-GLKLTAEDRQA---------IEVALArvGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALD 160
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
1325-1491 |
9.68e-12 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 67.02 E-value: 9.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASM---GLHMLRSRLTIIPQDPV------- 1394
Cdd:PRK10419 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLnraQRKAFRRDIQMVFQDSIsavnprk 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1395 ----LFSGSLR--INLDPFEiktddEIWKALELshLKsfvkslAAGLNHEIAEG-GENLSVGQRQLVCLARALLRKTKVL 1467
Cdd:PRK10419 107 tvreIIREPLRhlLSLDKAE-----RLARASEM--LR------AVDLDDSVLDKrPPQLSGGQLQRVCLARALAVEPKLL 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 939619619 1468 VLDEATAAVDLE-----------------------TDDLIQIRHFCH 1491
Cdd:PRK10419 174 ILDEAVSNLDLVlqagvirllkklqqqfgtaclfiTHDLRLVERFCQ 220
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
651-797 |
1.07e-11 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 69.32 E-value: 1.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 651 IENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG--KLAYVPQQAWI-QNATVRD 727
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPKglRIGYLPQEPPLdDDLTVLD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 728 NILFG--------QTYDR------------KRYNKV------IDACALRADID-ILSAGDLTEI-GEKGI-NLSGGQKQR 778
Cdd:COG0488 81 TVLDGdaelraleAELEEleaklaepdedlERLAELqeefeaLGGWEAEARAEeILSGLGFPEEdLDRPVsELSGGWRRR 160
|
170
....*....|....*....
gi 939619619 779 ISLARAVYSDADLYLLDDP 797
Cdd:COG0488 161 VALARALLSEPDLLLLDEP 179
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
659-814 |
1.10e-11 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 65.67 E-value: 1.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 659 GDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK----LAYVPQQAWI--QNA-----TVRD 727
Cdd:PRK13539 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGdiddPDVAEACHYLghRNAmkpalTVAE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 728 NILFGQTYdRKRYNKVIDACalradIDILSAGDLTEIgeKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHvGK 807
Cdd:PRK13539 93 NLEFWAAF-LGGEELDIAAA-----LEAVGLAPLAHL--PFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA-AV 163
|
....*..
gi 939619619 808 HIFEEVI 814
Cdd:PRK13539 164 ALFAELI 170
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
1325-1485 |
1.17e-11 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 66.98 E-value: 1.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAG-----GRISIDGVDIAS--MGLHMLRSRLTIIPQDPVLFS 1397
Cdd:PRK14258 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESevrveGRVEFFNQNIYErrVNLNRLRRQVSMVHPKPNLFP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1398 GSLRINL---------DPfEIKTDDEIWKALELSHLKSFVKslaaglnHEIAEGGENLSVGQRQLVCLARALLRKTKVLV 1468
Cdd:PRK14258 102 MSVYDNVaygvkivgwRP-KLEIDDIVESALKDADLWDEIK-------HKIHKSALDLSGGQQQRLCIARALAVKPKVLL 173
|
170 180
....*....|....*....|.
gi 939619619 1469 LDEATAAVD----LETDDLIQ 1485
Cdd:PRK14258 174 MDEPCFGLDpiasMKVESLIQ 194
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
657-854 |
1.21e-11 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 68.44 E-value: 1.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 657 SWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVV-------QAFLGEM----EKLAGV------VNTVGKlayvpQQAW 719
Cdd:PRK09452 23 SFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLrliagfeTPDSGRImldgQDITHVpaenrhVNTVFQ-----SYAL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 720 IQNATVRDNILFGQtydrkRYNKVIDACALRADIDILSAGDLTEIGE-KGINLSGGQKQRISLARAVYSDADLYLLDDPL 798
Cdd:PRK09452 98 FPHMTVFENVAFGL-----RMQKTPAAEITPRVMEALRMVQLEEFAQrKPHQLSGGQQQRVAIARAVVNKPKVLLLDESL 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 939619619 799 SAVDAHVGKHIFEEvigpkgiLARKSRVLvthGVTF----------LPQVDSIYVIKMGEISESGT 854
Cdd:PRK09452 173 SALDYKLRKQMQNE-------LKALQRKL---GITFvfvthdqeeaLTMSDRIVVMRDGRIEQDGT 228
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
664-832 |
1.21e-11 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 66.34 E-value: 1.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKLAYVP---QQAWIQN------ATVRDNILFGQT 734
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPgpdRMVVFQNysllpwLTVRENIALAVD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 735 YDRKRYNKVIDACALRADIDILSagdLTEIGEKGIN-LSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEEV 813
Cdd:TIGR01184 81 RVLPDLSKSERRAIVEEHIALVG---LTEAADKRPGqLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL 157
|
170 180
....*....|....*....|.
gi 939619619 814 IgpkGIL--ARKSRVLVTHGV 832
Cdd:TIGR01184 158 M---QIWeeHRVTVLMVTHDV 175
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
648-803 |
1.23e-11 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 66.62 E-value: 1.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 648 PMSIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLG-----EMEKLAGvvntvgklayvpqQAWIQN 722
Cdd:PRK11247 12 PLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGletpsAGELLAG-------------TAPLAE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 723 AtvRDNI-LFGQTYDRKRYNKVID-----------ACALRAdidiLSAGDLTE-IGEKGINLSGGQKQRISLARAVYSDA 789
Cdd:PRK11247 79 A--REDTrLMFQDARLLPWKKVIDnvglglkgqwrDAALQA----LAAVGLADrANEWPAALSGGQKQRVALARALIHRP 152
|
170
....*....|....
gi 939619619 790 DLYLLDDPLSAVDA 803
Cdd:PRK11247 153 GLLLLDEPLGALDA 166
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
664-861 |
1.24e-11 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 66.07 E-value: 1.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGeMEK-------LAGV-VNTVGKLAYVPQQAWI----------QNATV 725
Cdd:cd03258 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING-LERptsgsvlVDGTdLTLLSGKELRKARRRIgmifqhfnllSSRTV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 726 RDNILF-------GQTYDRKRYNKVIDACALRADIDILSAgdlteigekgiNLSGGQKQRISLARAVYSDADLYLLDDPL 798
Cdd:cd03258 100 FENVALpleiagvPKAEIEERVLELLELVGLEDKADAYPA-----------QLSGGQKQRVGIARALANNPKVLLCDEAT 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 939619619 799 SAVDAHVGKHIFEevigpkgiLARKSR-------VLVTHGVTFLPQV-DSIYVIKMGEISESGTFDQLVKN 861
Cdd:cd03258 169 SALDPETTQSILA--------LLRDINrelgltiVLITHEMEVVKRIcDRVAVMEKGEVVEEGTVEEVFAN 231
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
666-804 |
1.26e-11 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 68.20 E-value: 1.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 666 NINIEVKKGSLVALVGTVGSGKSSVVQAflgemekLAGVVN------TVG------------------KLAYVPQQAwiq 721
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRA-------IAGLERpdsgriRLGgevlqdsargiflpphrrRIGYVFQEA--- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 722 nA-----TVRDNILFGqtydRKRynkvidACALRADIDILSAGDLTEIG---EKGI-NLSGGQKQRISLARAVYSDADLY 792
Cdd:COG4148 87 -RlfphlSVRGNLLYG----RKR------APRAERRISFDEVVELLGIGhllDRRPaTLSGGERQRVAIGRALLSSPRLL 155
|
170
....*....|..
gi 939619619 793 LLDDPLSAVDAH 804
Cdd:COG4148 156 LMDEPLAALDLA 167
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
651-802 |
1.33e-11 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 66.05 E-value: 1.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 651 IENGEFSWGDEIT-LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVV-------NTVGK---------LAY 713
Cdd:cd03256 3 VENLSKTYPNGKKaLKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVlidgtdiNKLKGkalrqlrrqIGM 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 714 VPQQ-AWIQNATVRDNILFG------------QTYDRKRYNKvidACALRADIDILS-----AGdlteigekgiNLSGGQ 775
Cdd:cd03256 83 IFQQfNLIERLSVLENVLSGrlgrrstwrslfGLFPKEEKQR---ALAALERVGLLDkayqrAD----------QLSGGQ 149
|
170 180
....*....|....*....|....*..
gi 939619619 776 KQRISLARAVYSDADLYLLDDPLSAVD 802
Cdd:cd03256 150 QQRVAIARALMQQPKLILADEPVASLD 176
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
649-830 |
1.36e-11 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 67.94 E-value: 1.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 649 MSIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK-LAYVP-----------Q 716
Cdd:PRK11607 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVdLSHVPpyqrpinmmfqS 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 717 QAWIQNATVRDNILFGQTYDRKRYNKVIDACAlradiDILSAGDLTEI-GEKGINLSGGQKQRISLARAVYSDADLYLLD 795
Cdd:PRK11607 100 YALFPHMTVEQNIAFGLKQDKLPKAEIASRVN-----EMLGLVHMQEFaKRKPHQLSGGQRQRVALARSLAKRPKLLLLD 174
|
170 180 190
....*....|....*....|....*....|....*..
gi 939619619 796 DPLSAVDAHVGKHIFEEVIgpkGILAR--KSRVLVTH 830
Cdd:PRK11607 175 EPMGALDKKLRDRMQLEVV---DILERvgVTCVMVTH 208
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
1047-1471 |
1.44e-11 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 69.06 E-value: 1.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1047 FFSSLAISLGCLKCSQLL-----HQTLlyYNLRwpMELFD---TTPL--------GRIVNRFSKDIDTIDNVLPFNIRVV 1110
Cdd:COG4615 54 FAGLLVLLLLSRLASQLLltrlgQHAV--ARLR--LRLSRrilAAPLerlerigaARLLAALTEDVRTISQAFVRLPELL 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1111 IGQAYMVLATIVVISLSTPIFLAVIVPIAFLYYFAQRFyVATSRQLMRLESVSRSPIYSHFSETVTGA-----STIRAYN 1185
Cdd:COG4615 130 QSVALVLGCLAYLAWLSPPLFLLTLVLLGLGVAGYRLL-VRRARRHLRRAREAEDRLFKHFRALLEGFkelklNRRRRRA 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1186 VGDRFIEESDAKVDKNqvckypSVIANRWLAIrLEMVGNLIILF--ASLFAVLggqtnPGLVGLS----VSYAL------ 1253
Cdd:COG4615 209 FFDEDLQPTAERYRDL------RIRADTIFAL-ANNWGNLLFFAliGLILFLL-----PALGWADpavlSGFVLvllflr 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1254 -QVTQTLNWLVRMSSdieTNiVSVERIKEYG--ETKQEAPWELEQDKNKPKNWpqeGRVEFQNfqVRYR-------EGLD 1323
Cdd:COG4615 277 gPLSQLVGALPTLSR---AN-VALRKIEELElaLAAAEPAAADAAAPPAPADF---QTLELRG--VTYRypgedgdEGFT 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1324 LvlrG-VSFNIQGGEKVGIVGRTGAGKSslTLA-----LFRiieAAGGRISIDGVDIASMGLHMLRSRLTIIPQDPVLFS 1397
Cdd:COG4615 348 L---GpIDLTIRRGELVFIVGGNGSGKS--TLAklltgLYR---PESGEILLDGQPVTADNREAYRQLFSAVFSDFHLFD 419
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1398 GslriNLDPFEIKTDDEI--W-KALELSHLKSFvkslaaglnheiaEGGE----NLSVGQRQLVCLARALLRKTKVLVLD 1470
Cdd:COG4615 420 R----LLGLDGEADPARAreLlERLELDHKVSV-------------EDGRfsttDLSQGQRKRLALLVALLEDRPILVFD 482
|
.
gi 939619619 1471 E 1471
Cdd:COG4615 483 E 483
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
1325-1484 |
1.48e-11 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 65.21 E-value: 1.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTIIPQDPVLFSGSLRINL 1404
Cdd:cd03231 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1405 DPF-EIKTDDEIWKALELSHLksfvkslaAGLNHEIAEggeNLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDL 1483
Cdd:cd03231 95 RFWhADHSDEQVEEALARVGL--------NGFEDRPVA---QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVAR 163
|
.
gi 939619619 1484 I 1484
Cdd:cd03231 164 F 164
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
659-830 |
1.58e-11 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 65.51 E-value: 1.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 659 GDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK-LAYVPQQA----------------WIQ 721
Cdd:cd03292 12 NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQdVSDLRGRAipylrrkigvvfqdfrLLP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 722 NATVRDNILF-------GQTYDRKRYNKVIDACALRADIDILSAGdlteigekginLSGGQKQRISLARAVYSDADLYLL 794
Cdd:cd03292 92 DRNVYENVAFalevtgvPPREIRKRVPAALELVGLSHKHRALPAE-----------LSGGEQQRVAIARAIVNSPTILIA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 939619619 795 DDPLSAVDAHVGKHIFEEVigpKGILARKSRVLV-TH 830
Cdd:cd03292 161 DEPTGNLDPDTTWEIMNLL---KKINKAGTTVVVaTH 194
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1310-1477 |
1.63e-11 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 68.56 E-value: 1.63e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1310 EFQNFQVRYR--EGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRI----IEAAGGRISIDGVDIASMGLHMLR 1383
Cdd:COG4172 8 SVEDLSVAFGqgGGTVEAVKGVSFDIAAGETLALVGESGSGKSVTALSILRLlpdpAAHPSGSILFDGQDLLGLSERELR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1384 ----SRLTIIPQDPV-----LFS-G-----SLRI--NLDPFEIKTddeiwKALEL----------SHLKSFvkslaaglN 1436
Cdd:COG4172 88 rirgNRIAMIFQEPMtslnpLHTiGkqiaeVLRLhrGLSGAAARA-----RALELlervgipdpeRRLDAY--------P 154
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 939619619 1437 HEiaeggenLSVGQRQLVCLARALLRKTKVLVLDEATAAVD 1477
Cdd:COG4172 155 HQ-------LSGGQRQRVMIAMALANEPDLLIADEPTTALD 188
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
1317-1484 |
1.74e-11 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 65.61 E-value: 1.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1317 RYREG--LDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASM---GLHMLRSR-LTIIP 1390
Cdd:PRK11629 14 RYQEGsvQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLssaAKAELRNQkLGFIY 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1391 Q------D---------PVLFSGSlrinlDPFEIKTddeiwKALELshlksfvksLAA-GLNHEIAEGGENLSVGQRQLV 1454
Cdd:PRK11629 94 QfhhllpDftalenvamPLLIGKK-----KPAEINS-----RALEM---------LAAvGLEHRANHRPSELSGGERQRV 154
|
170 180 190
....*....|....*....|....*....|
gi 939619619 1455 CLARALLRKTKVLVLDEATAAVDLETDDLI 1484
Cdd:PRK11629 155 AIARALVNNPRLVLADEPTGNLDARNADSI 184
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
664-797 |
1.87e-11 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 65.46 E-value: 1.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEmEKL-AGVVNTVG----------------KLAYVPQQAW-IQNATV 725
Cdd:COG2884 18 LSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGE-ERPtSGQVLVNGqdlsrlkrreipylrrRIGVVFQDFRlLPDRTV 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 939619619 726 RDNILFG---QTYDRKRYNKVIDAcALradidilsagDLTEIGEKG----INLSGGQKQRISLARAVYSDADLYLLDDP 797
Cdd:COG2884 97 YENVALPlrvTGKSRKEIRRRVRE-VL----------DLVGLSDKAkalpHELSGGEQQRVAIARALVNRPELLLADEP 164
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
651-854 |
1.88e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 66.55 E-value: 1.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 651 IENGEFSWGDEI-TLRNINIEVKKGSLVALVGTVGSGKSSVVQAF-----------------LGEMEKLAGVVNTVGKLA 712
Cdd:PRK13644 4 LENVSYSYPDGTpALENINLVIKKGEYIGIIGKNGSGKSTLALHLngllrpqkgkvlvsgidTGDFSKLQGIRKLVGIVF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 713 YVPQQAWIqNATVRDNILFGQTydrkryNKVIDACALRADIDILsagdLTEIG-EK-----GINLSGGQKQRISLARAVY 786
Cdd:PRK13644 84 QNPETQFV-GRTVEEDLAFGPE------NLCLPPIEIRKRVDRA----LAEIGlEKyrhrsPKTLSGGQGQCVALAGILT 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 787 SDADLYLLDDPLSAVDAHVGKHIFEEV--IGPKGilarKSRVLVTHGVTFLPQVDSIYVIKMGEISESGT 854
Cdd:PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIkkLHEKG----KTIVYITHNLEELHDADRIIVMDRGKIVLEGE 218
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1325-1477 |
1.89e-11 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 65.53 E-value: 1.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISID----GVDIASMGLH-MLRSR----------LTII 1389
Cdd:COG4778 26 VLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRhdggWVDLAQASPReILALRrrtigyvsqfLRVI 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1390 PqdpvlfsgslRInldpfeiktddeiwKALELshlksfVKS--LAAGLNHEIAEG-----------GENL--------SV 1448
Cdd:COG4778 106 P----------RV--------------SALDV------VAEplLERGVDREEARArarellarlnlPERLwdlppatfSG 155
|
170 180
....*....|....*....|....*....
gi 939619619 1449 GQRQLVCLARALLRKTKVLVLDEATAAVD 1477
Cdd:COG4778 156 GEQQRVNIARGFIADPPLLLLDEPTASLD 184
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
664-830 |
1.91e-11 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 65.20 E-value: 1.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEmekLAGVVNTVGKL-----------------AYVPQQAWI-QNATV 725
Cdd:COG4136 17 LAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGT---LSPAFSASGEVllngrrltalpaeqrriGILFQDDLLfPHLSV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 726 RDNILFGQTYDRKRYNKviDACALRAdidiLSAGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADLYLLDDPLSAVDAH 804
Cdd:COG4136 94 GENLAFALPPTIGRAQR--RARVEQA----LEEAGLAGFADRDPAtLSGGQRARVALLRALLAEPRALLLDEPFSKLDAA 167
|
170 180 190
....*....|....*....|....*....|
gi 939619619 805 ----VGKHIFEEvIGPKGILArksrVLVTH 830
Cdd:COG4136 168 lraqFREFVFEQ-IRQRGIPA----LLVTH 192
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
648-811 |
2.21e-11 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 68.62 E-value: 2.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 648 PMSIENGEfswgdeITLRNINIEVKKGSLVALVGTVGSGKSSVvQAFLGEMEKLAGVVNTV---GKLAYVPQQAWIQNAT 724
Cdd:TIGR00954 458 PLVTPNGD------VLIESLSFEVPSGNNLLICGPNGCGKSSL-FRILGELWPVYGGRLTKpakGKLFYVPQRPYMTLGT 530
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 725 VRDNILFGQTYDRKRYNKVIDACAlradIDILSAGDLTEIGEKGIN----------LSGGQKQRISLARAVYSDADLYLL 794
Cdd:TIGR00954 531 LRDQIIYPDSSEDMKRRGLSDKDL----EQILDNVQLTHILEREGGwsavqdwmdvLSGGEKQRIAMARLFYHKPQFAIL 606
|
170
....*....|....*..
gi 939619619 795 DDPLSAVDAHVGKHIFE 811
Cdd:TIGR00954 607 DECTSAVSVDVEGYMYR 623
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1309-1488 |
2.23e-11 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 65.50 E-value: 2.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYreGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDI--ASMGLHMLR--- 1383
Cdd:PRK09493 2 IEFKNVSKHF--GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVndPKVDERLIRqea 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1384 ----SRLTIIPQ----DPVLFsGSLRINldpfEIKTDDEIWKALELshLKSFvkSLAAGLNHEIAEggenLSVGQRQLVC 1455
Cdd:PRK09493 80 gmvfQQFYLFPHltalENVMF-GPLRVR----GASKEEAEKQAREL--LAKV--GLAERAHHYPSE----LSGGQQQRVA 146
|
170 180 190
....*....|....*....|....*....|...
gi 939619619 1456 LARALLRKTKVLVLDEATAAVDLEtddliqIRH 1488
Cdd:PRK09493 147 IARALAVKPKLMLFDEPTSALDPE------LRH 173
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
667-802 |
2.28e-11 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 67.06 E-value: 2.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 667 INIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG-----------------KLAYVPQQAWI-QNATVRDN 728
Cdd:TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGrtlfdsrkgiflppekrRIGYVFQEARLfPHLSVRGN 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 939619619 729 ILFGQTYDRKRYNKVIDAcalrADIDILSAGDLTEIGEKgiNLSGGQKQRISLARAVYSDADLYLLDDPLSAVD 802
Cdd:TIGR02142 96 LRYGMKRARPSERRISFE----RVIELLGIGHLLGRLPG--RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
648-862 |
2.51e-11 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 65.39 E-value: 2.51e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 648 PM-SIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK-LAYVPQQAWI----- 720
Cdd:COG1127 4 PMiEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQdITGLSEKELYelrrr 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 721 -----QNA------TVRDNILFGQtydrkRYNKVIDAcALRADI--DILSAGDLTEIGEKGIN-LSGGQKQRISLARAVY 786
Cdd:COG1127 84 igmlfQGGalfdslTVFENVAFPL-----REHTDLSE-AEIRELvlEKLELVGLPGAADKMPSeLSGGMRKRVALARALA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 787 SDADLYLLDDPLSAVDAhVGKHIFEEVIgpkgilaRKSR-------VLVTHGVTFLPQV-DSIYVIKMGEISESGTFDQL 858
Cdd:COG1127 158 LDPEILLYDEPTAGLDP-ITSAVIDELI-------RELRdelgltsVVVTHDLDSAFAIaDRVAVLADGKIIAEGTPEEL 229
|
....
gi 939619619 859 VKNK 862
Cdd:COG1127 230 LASD 233
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
649-869 |
2.77e-11 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 65.42 E-value: 2.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 649 MSIE--NGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAF-LGEMEKlAGVVNTVG---------------- 709
Cdd:PRK11124 1 MSIQlnGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLnLLEMPR-SGTLNIAGnhfdfsktpsdkaire 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 710 ---KLAYVPQQ--AWiQNATVRDNILFGQTydrkRYNKVIDACALRADIDILSAGDLTEIGEK-GINLSGGQKQRISLAR 783
Cdd:PRK11124 80 lrrNVGMVFQQynLW-PHLTVQQNLIEAPC----RVLGLSKDQALARAEKLLERLRLKPYADRfPLHLSGGQQQRVAIAR 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 784 AVYSDADLYLLDDPLSAVD----AHVGKHIFEevIGPKGIlarkSRVLVTHGVTFLPQVDSiYVIKM--GEISESGTFDQ 857
Cdd:PRK11124 155 ALMMEPQVLLFDEPTAALDpeitAQIVSIIRE--LAETGI----TQVIVTHEVEVARKTAS-RVVYMenGHIVEQGDASC 227
|
250
....*....|...
gi 939619619 858 LVKNK-GAFADFI 869
Cdd:PRK11124 228 FTQPQtEAFKNYL 240
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1326-1486 |
2.95e-11 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 67.74 E-value: 2.95e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1326 LRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDG--VDIAS------MGLHMlrsrltiIPQDPVLFs 1397
Cdd:COG3845 21 NDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGkpVRIRSprdaiaLGIGM-------VHQHFMLV- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1398 gslrinlDPFeikTddeiwkALE-----LSHLKSFVKSLAAgLNHEIAEGGE-------------NLSVGQRQLVCLARA 1459
Cdd:COG3845 93 -------PNL---T------VAEnivlgLEPTKGGRLDRKA-ARARIRELSErygldvdpdakveDLSVGEQQRVEILKA 155
|
170 180
....*....|....*....|....*....
gi 939619619 1460 LLRKTKVLVLDEATaAV--DLETDDLIQI 1486
Cdd:COG3845 156 LYRGARILILDEPT-AVltPQEADELFEI 183
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
1328-1477 |
3.30e-11 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 66.65 E-value: 3.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1328 GVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMG---LHMLRSRLTIIPQDPvLFSGSLRINL 1404
Cdd:PRK15079 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKddeWRAVRSDIQMIFQDP-LASLNPRMTI 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1405 dpfeiktDDEIWKALELSH-------LKSFVKSLAA--GL-----N---HEiaeggenLSVGQRQLVCLARALLRKTKVL 1467
Cdd:PRK15079 118 -------GEIIAEPLRTYHpklsrqeVKDRVKAMMLkvGLlpnliNrypHE-------FSGGQCQRIGIARALILEPKLI 183
|
170
....*....|
gi 939619619 1468 VLDEATAAVD 1477
Cdd:PRK15079 184 ICDEPVSALD 193
|
|
| ABC_6TM_TmrB_like |
cd18541 |
Six-transmembrane helical domain (TmrB) of the heterodimeric Thermus thermophilus multidrug ... |
333-625 |
3.86e-11 |
|
Six-transmembrane helical domain (TmrB) of the heterodimeric Thermus thermophilus multidrug resistance proteins TmrAB, and similar proteins; This group represents the six-transmembrane helical domain (6-TMD) of the heterodimeric Thermus thermophilus multidrug resistance proteins A and B (TmrAB), a homolog of the Antigen Translocation Complex Tap, and similar proteins. TmrAB has been shown to able to restore antigen processing in human TAP-deficient cells. The 6-transmembrane (TM) helices typically found in the ATP-binding cassette (ABC) transporters that function as exporters, which contain 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds and a various type of lipids. ABC transporters typically consist of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The sequences and structures of the TMDs are quite varied between the different type of transporters, suggesting significant structural diversity of the translocated substrates, while NBDs are conserved among all ABC transporters. The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane. However, some ABC genes are organized as half-transporters, which must form either homodimers or heterodimers to form a functional transporter. The ABC exporters play a role in multidrug resistance to antibiotics and anticancer agents, and mutations in these proteins have been shown to cause severe human diseases such as cystic fibrosis.
Pssm-ID: 349985 [Multi-domain] Cd Length: 293 Bit Score: 65.90 E-value: 3.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 333 FLFGALMKLFTDTLTFAQPQVLSLIISFVEAQDAEpeWKGILYAVLLFVLAAAQTFILgQYFHRMFIVGL--RIRTALIN 410
Cdd:cd18541 1 YLLGILFLILVDLLQLLIPRIIGRAIDALTAGTLT--ASQLLRYALLILLLALLIGIF-RFLWRYLIFGAsrRIEYDLRN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 411 AIYRKALRISNSTKKESTVGEIVNLMAVDAQRFMELTTY-LNMIWSAPLQIGLALYFLWQQLGPSVLAGLAVMIILIPVN 489
Cdd:cd18541 78 DLFAHLLTLSPSFYQKNRTGDLMARATNDLNAVRMALGPgILYLVDALFLGVLVLVMMFTISPKLTLIALLPLPLLALLV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 490 GVIASRI-KTYQIRQMKYKD--ERVKlmnEVLSGIKVLKLYAWEPS----FEKQVLDIRDKEIATLRSTAYLNAGTSFLW 562
Cdd:cd18541 158 YRLGKKIhKRFRKVQEAFSDlsDRVQ---ESFSGIRVIKAFVQEEAeierFDKLNEEYVEKNLRLARVDALFFPLIGLLI 234
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 939619619 563 SCApFLVSLVtFATYVLIDENNVLDatkTFVSLSL-FNILRFPLTMLPMLItNLVQT-QVSVNRI 625
Cdd:cd18541 235 GLS-FLIVLW-YGGRLVIRGTITLG---DLVAFNSyLGMLIWPMMALGWVI-NLIQRgAASLKRI 293
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
664-797 |
4.41e-11 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 67.35 E-value: 4.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK--------------LAYVP----QQAWIQNATV 725
Cdd:COG1129 268 VRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKpvrirsprdairagIAYVPedrkGEGLVLDLSI 347
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 939619619 726 RDNILFGqTYDRKRYNKVID-------ACALRADIDILSAGDLTEIGekgiNLSGGQKQRISLARAVYSDADLYLLDDP 797
Cdd:COG1129 348 RENITLA-SLDRLSRGGLLDrrreralAEEYIKRLRIKTPSPEQPVG----NLSGGNQQKVVLAKWLATDPKVLILDEP 421
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1309-1487 |
4.56e-11 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 65.60 E-value: 4.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYreGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMlRSRLTI 1388
Cdd:PRK13537 8 IDFRNVEKRY--GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHA-RQRVGV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1389 IPQdpvlFSgslriNLDP-FEIKTDDEIWK---ALELSHLKSFVKSL---AAGLNHEIAEGGEnLSVGQRQLVCLARALL 1461
Cdd:PRK13537 85 VPQ----FD-----NLDPdFTVRENLLVFGryfGLSAAAARALVPPLlefAKLENKADAKVGE-LSGGMKRRLTLARALV 154
|
170 180
....*....|....*....|....*.
gi 939619619 1462 RKTKVLVLDEATAAVDLETDDLIQIR 1487
Cdd:PRK13537 155 NDPDVLVLDEPTTGLDPQARHLMWER 180
|
|
| ABC_6TM_Tm288_like |
cd18547 |
Six-transmembrane helical domain Tm288 of a heterodimeric ABC transporter Tm287/288 from ... |
1076-1279 |
5.49e-11 |
|
Six-transmembrane helical domain Tm288 of a heterodimeric ABC transporter Tm287/288 from Thermotoga maritima and similar proteins; This group represents the six-transmembrane helical domain (Tm288) of a heterodimeric ABC transporter Tm287/288 from Thermotoga maritima and similar proteins. This TMD possesses the ATP-binding cassette (ABC) exporter fold, which is characterized by 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds, a various type of lipids and polypeptides. ABC transporters typically consist of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The sequences and structures of the TMDs are quite varied between the different type of transporters, suggesting significant structural diversity of the translocated substrates, while NBDs are conserved among all ABC transporters. The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane by alternating between inward- and outward-facing conformations. Moreover, some ABC genes are organized as half-transporters, which must form either homodimers or heterodimers to form a functional transporter. The ABC exporters play a role in multidrug resistance to antibiotics and anticancer agents, and mutations in these proteins have been shown to cause severe human diseases such as cystic fibrosis.
Pssm-ID: 349991 [Multi-domain] Cd Length: 298 Bit Score: 65.50 E-value: 5.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1076 PMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIVV-ISLSTPIFLAVIVPIAFLYYFA-------QR 1147
Cdd:cd18547 92 PLSYFDTHSHGDIMSRVTNDVDNISQALSQSLTQLISSILTIVGTLIMmLYISPLLTLIVLVTVPLSLLVTkfiakrsQK 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1148 FYVATSRQLMRLEsvsrspiySHFSETVTGASTIRAYNVGDRFIEESDAKVDKNQVCkypSVIANRWLAIR---LEMVGN 1224
Cdd:cd18547 172 YFRKQQKALGELN--------GYIEEMISGQKVVKAFNREEEAIEEFDEINEELYKA---SFKAQFYSGLLmpiMNFINN 240
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 939619619 1225 L----IILFASLFaVLGGQTNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERI 1279
Cdd:cd18547 241 LgyvlVAVVGGLL-VINGALTVGVIQAFLQYSRQFSQPINQISQQINSLQSALAGAERV 298
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1328-1477 |
5.97e-11 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 66.75 E-value: 5.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1328 GVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGG----RISIDGVDIASMG----------LHMLRSRLTIIPQDP 1393
Cdd:TIGR03269 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGevnvRVGDEWVDMTKPGpdgrgrakryIGILHQEYDLYPHRT 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1394 VLFSGSLRINLD-PFeiktddeiwkalELSHLKSFVKSLAAGLNHEIAEG-----GENLSVGQRQLVCLARALLRKTKVL 1467
Cdd:TIGR03269 382 VLDNLTEAIGLElPD------------ELARMKAVITLKMVGFDEEKAEEildkyPDELSEGERHRVALAQVLIKEPRIV 449
|
170
....*....|
gi 939619619 1468 VLDEATAAVD 1477
Cdd:TIGR03269 450 ILDEPTGTMD 459
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
658-861 |
6.28e-11 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 64.61 E-value: 6.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 658 WGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQA--FLGEMEKLAGVVN---------TVGKLAyVPQQAWIQNATVR 726
Cdd:PRK10619 15 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCinFLEKPSEGSIVVNgqtinlvrdKDGQLK-VADKNQLRLLRTR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 727 DNILFgQTYDRKRYNKVIDAcALRADIDIL--SAGDLTEIGEK-----GIN----------LSGGQKQRISLARAVYSDA 789
Cdd:PRK10619 94 LTMVF-QHFNLWSHMTVLEN-VMEAPIQVLglSKQEARERAVKylakvGIDeraqgkypvhLSGGQQQRVSIARALAMEP 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 939619619 790 DLYLLDDPLSAVDAH-VGkhifeEVIGPKGILAR--KSRVLVTHGVTFLPQVDS-IYVIKMGEISESGTFDQLVKN 861
Cdd:PRK10619 172 EVLLFDEPTSALDPElVG-----EVLRIMQQLAEegKTMVVVTHEMGFARHVSShVIFLHQGKIEEEGAPEQLFGN 242
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
1325-1491 |
8.89e-11 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 63.32 E-value: 8.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHM-LRSRLTIIpqDPVLFSGSLRiN 1403
Cdd:cd03220 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGgFNPELTGR--ENIYLNGRLL-G 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1404 LDPFEIKT-DDEIWkalELSHLKSF----VK------------SLAAGLNHEIAEGGENLSVGQR--QLVCLAR--ALLR 1462
Cdd:cd03220 114 LSRKEIDEkIDEII---EFSELGDFidlpVKtyssgmkarlafAIATALEPDILLIDEVLAVGDAafQEKCQRRlrELLK 190
|
170 180
....*....|....*....|....*....
gi 939619619 1463 KTKVLVLdeataaVdleTDDLIQIRHFCH 1491
Cdd:cd03220 191 QGKTVIL------V---SHDPSSIKRLCD 210
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
664-862 |
9.01e-11 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 63.61 E-value: 9.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK--------------LAYVPQQAWI-QNATVRDN 728
Cdd:cd03219 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEditglppheiarlgIGRTFQIPRLfPELTVLEN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 729 ILFGQTYDRK------RYNKVIDACALRADiDILsagDLTEIGEKG----INLSGGQKQRISLARAVYSDADLYLLDDP- 797
Cdd:cd03219 96 VMVAAQARTGsglllaRARREEREARERAE-ELL---ERVGLADLAdrpaGELSYGQQRRLEIARALATDPKLLLLDEPa 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 798 --LSAVDAHVGKHIFEEvigpkgiLARKSR--VLVTHGVTFLPQV-DSIYVIKMGEISESGTFDQLVKNK 862
Cdd:cd03219 172 agLNPEETEELAELIRE-------LRERGItvLLVEHDMDVVMSLaDRVTVLDQGRVIAEGTPDEVRNNP 234
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
658-861 |
1.22e-10 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 63.71 E-value: 1.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 658 WGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAF-----LGEMEKLAGVVNTVGKLAYVPQQAWIQ----------- 721
Cdd:PRK14267 14 YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFnrlleLNEEARVEGEVRLFGRNIYSPDVDPIEvrrevgmvfqy 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 722 -----NATVRDNILFGQtydrkRYNKVIDAcalRADID-----ILSAGDLTE-----IGEKGINLSGGQKQRISLARAVY 786
Cdd:PRK14267 94 pnpfpHLTIYDNVAIGV-----KLNGLVKS---KKELDervewALKKAALWDevkdrLNDYPSNLSGGQRQRLVIARALA 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 939619619 787 SDADLYLLDDPLSAVDAhVGKHIFEEVigpkgILARKSR---VLVTHGVTFLPQV-DSIYVIKMGEISESGTFDQLVKN 861
Cdd:PRK14267 166 MKPKILLMDEPTANIDP-VGTAKIEEL-----LFELKKEytiVLVTHSPAQAARVsDYVAFLYLGKLIEVGPTRKVFEN 238
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
650-861 |
1.24e-10 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 63.47 E-value: 1.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSvvqaFL-----------GEMEkLAGV--------VNTV-G 709
Cdd:COG1126 3 EIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKST----LLrcinlleepdsGTIT-VDGEdltdskkdINKLrR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 710 KLAYVPQQ-AWIQNATVRDNILFGQTYDRKRYNKVIDACALRAdidilsagdLTEIG--EKG----INLSGGQKQRISLA 782
Cdd:COG1126 78 KVGMVFQQfNLFPHLTVLENVTLAPIKVKKMSKAEAEERAMEL---------LERVGlaDKAdaypAQLSGGQQQRVAIA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 783 RAVYSDADLYLLDDPLSAVD----AHVgkhifEEVIgpKGiLARKSR--VLVTHGVTFLPQV-DSIYVIKMGEISESGTF 855
Cdd:COG1126 149 RALAMEPKVMLFDEPTSALDpelvGEV-----LDVM--RD-LAKEGMtmVVVTHEMGFAREVaDRVVFMDGGRIVEEGPP 220
|
....*.
gi 939619619 856 DQLVKN 861
Cdd:COG1126 221 EEFFEN 226
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
664-869 |
1.25e-10 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 64.11 E-value: 1.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFL------GEMEkLAGVV-NTVG------KLAYVPQQAWIQNATVRDNI- 729
Cdd:cd03289 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLrllnteGDIQ-IDGVSwNSVPlqkwrkAFGVIPQKVFIFSGTFRKNLd 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 730 LFGQTYDRKRYnKVIDACALRADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAhVGKHI 809
Cdd:cd03289 99 PYGKWSDEEIW-KVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP-ITYQV 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 810 FEEVIgpKGILARKSRVLVTHGVTFLPQVDSIYVIKMGEISESGTFDQLVKNKGAFADFI 869
Cdd:cd03289 177 IRKTL--KQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAI 234
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
1325-1477 |
1.26e-10 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 64.78 E-value: 1.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLtlaLfRIIeaAG------GRISIDGVDIASmGLHMLRSRLTIIPQDPVLFS- 1397
Cdd:COG1118 17 LLDDVSLEIASGELVALLGPSGSGKTTL---L-RII--AGletpdsGRIVLNGRDLFT-NLPPRERRVGFVFQHYALFPh 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1398 ---------GsLRI-NLDPFEIKTDDEIWkaLELSHLKSFVKSLAAglnheiaeggeNLSVGQRQLVCLARALLRKTKVL 1467
Cdd:COG1118 90 mtvaeniafG-LRVrPPSKAEIRARVEEL--LELVQLEGLADRYPS-----------QLSGGQRQRVALARALAVEPEVL 155
|
170
....*....|
gi 939619619 1468 VLDEATAAVD 1477
Cdd:COG1118 156 LLDEPFGALD 165
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
1330-1477 |
1.45e-10 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 63.06 E-value: 1.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1330 SFNIQGGEKVGIVGRTGAGKSSLtLALFR-IIEAAGGRISIDGVDiasmglHmlrsRLTIIPQDPV--------LFSG-S 1399
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTL-LNLIAgFLTPASGSLTLNGQD------H----TTTPPSRRPVsmlfqennLFSHlT 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1400 LRIN----LDPfeiktddeiwkALELSHL-KSFVKSLAA--GLNHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEA 1472
Cdd:PRK10771 88 VAQNiglgLNP-----------GLKLNAAqREKLHAIARqmGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEP 156
|
....*
gi 939619619 1473 TAAVD 1477
Cdd:PRK10771 157 FSALD 161
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1329-1486 |
1.51e-10 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 64.86 E-value: 1.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1329 VSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMG-----LHMLRSRLTIIPQDPV---LFSGSL 1400
Cdd:PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPpyqrpINMMFQSYALFPHMTVeqnIAFGLK 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1401 RINLDPFEIKtdDEIWKALELSHLKSFVKSLAaglnHEiaeggenLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLET 1480
Cdd:PRK11607 118 QDKLPKAEIA--SRVNEMLGLVHMQEFAKRKP----HQ-------LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKL 184
|
....*.
gi 939619619 1481 DDLIQI 1486
Cdd:PRK11607 185 RDRMQL 190
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
1309-1477 |
1.52e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 63.56 E-value: 1.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGlDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIA--SMGLHMLRSRL 1386
Cdd:PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKydKKSLLEVRKTV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1387 TIIPQDP--VLFSGSLR--INLDPFEIKTD-DEIWKALELShLKsfvkslAAGLnheiaEGGEN-----LSVGQRQLVCL 1456
Cdd:PRK13639 81 GIVFQNPddQLFAPTVEedVAFGPLNLGLSkEEVEKRVKEA-LK------AVGM-----EGFENkpphhLSGGQKKRVAI 148
|
170 180
....*....|....*....|.
gi 939619619 1457 ARALLRKTKVLVLDEATAAVD 1477
Cdd:PRK13639 149 AGILAMKPEIIVLDEPTSGLD 169
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
664-864 |
1.73e-10 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 62.74 E-value: 1.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKS----SVV--------QAFLGE-------MEKLA--GvvntvgkLAYVPQQAWI-Q 721
Cdd:COG1137 19 VKDVSLEVNQGEIVGLLGPNGAGKTttfyMIVglvkpdsgRIFLDGedithlpMHKRArlG-------IGYLPQEASIfR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 722 NATVRDNI---LFGQTYDRKRYNKVIDacalradiDILSAGDLTEIGE-KGINLSGGQKQRISLARAVYSDADLYLLDDP 797
Cdd:COG1137 92 KLTVEDNIlavLELRKLSKKEREERLE--------ELLEEFGITHLRKsKAYSLSGGERRRVEIARALATNPKFILLDEP 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 939619619 798 LSAVD--AhvgkhifeeVIGPKGILAR-KSR---VLVT-HGV--TfLPQVDSIYVIKMGEISESGTFDQLVKNKGA 864
Cdd:COG1137 164 FAGVDpiA---------VADIQKIIRHlKERgigVLITdHNVreT-LGICDRAYIISEGKVLAEGTPEEILNNPLV 229
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
657-803 |
2.02e-10 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 64.28 E-value: 2.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 657 SWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGeMEKLagvvnTVGKLaYVPQQ------------------- 717
Cdd:PRK11000 12 AYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG-LEDI-----TSGDL-FIGEKrmndvppaergvgmvfqsy 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 718 AWIQNATVRDNILFG-------QTYDRKRYNKVIDacalradidILSAGDLTEIGEKGinLSGGQKQRISLARAVYSDAD 790
Cdd:PRK11000 85 ALYPHLSVAENMSFGlklagakKEEINQRVNQVAE---------VLQLAHLLDRKPKA--LSGGQRQRVAIGRTLVAEPS 153
|
170
....*....|...
gi 939619619 791 LYLLDDPLSAVDA 803
Cdd:PRK11000 154 VFLLDEPLSNLDA 166
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
1325-1485 |
2.35e-10 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 62.76 E-value: 2.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISID------GVDIASMGLHMLRSRLTIIPQDPVLFS- 1397
Cdd:PRK14246 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDgkvlyfGKDIFQIDAIKLRKEVGMVFQQPNPFPh 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1398 ----GSLRINLDPFEIKTDDEIWKALELSHLK-SFVKSLAAGLNHEIAEggenLSVGQRQLVCLARALLRKTKVLVLDEA 1472
Cdd:PRK14246 105 lsiyDNIAYPLKSHGIKEKREIKKIVEECLRKvGLWKEVYDRLNSPASQ----LSGGQQQRLTIARALALKPKVLLMDEP 180
|
170
....*....|...
gi 939619619 1473 TAAVDLETDDLIQ 1485
Cdd:PRK14246 181 TSMIDIVNSQAIE 193
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
657-849 |
2.56e-10 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 60.52 E-value: 2.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 657 SWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAflgemekLAGVvntvgklaYVPQQAwiqnatvrdNILF-GQTY 735
Cdd:cd03216 9 RFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKI-------LSGL--------YKPDSG---------EILVdGKEV 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 736 DRKRYNKvidacALRAdidilsagdlteigekGIN----LSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFE 811
Cdd:cd03216 65 SFASPRD-----ARRA----------------GIAmvyqLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK 123
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 939619619 812 EVigpKGILAR-KSRVLVTHgvtFLPQV----DSIYVIKMGEI 849
Cdd:cd03216 124 VI---RRLRAQgVAVIFISH---RLDEVfeiaDRVTVLRDGRV 160
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
650-830 |
2.59e-10 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 62.41 E-value: 2.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGvvNTVG----------------KLAY 713
Cdd:COG1119 5 ELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYG--NDVRlfgerrggedvwelrkRIGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 714 V-P--QQAWIQNATVRDNIL---FGQTYdrkRYNKVIDACALRADiDILSAGDLTEIGEKGIN-LSGGQKQRISLARAVY 786
Cdd:COG1119 83 VsPalQLRFPRDETVLDVVLsgfFDSIG---LYREPTDEQRERAR-ELLELLGLAHLADRPFGtLSQGEQRRVLIARALV 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 939619619 787 SDADLYLLDDPLSAVDAHvGKHIFEEVIgpkGILARKSR---VLVTH 830
Cdd:COG1119 159 KDPELLILDEPTAGLDLG-ARELLLALL---DKLAAEGAptlVLVTH 201
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
664-803 |
2.72e-10 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 62.79 E-value: 2.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKLAYVP---------QQAWIQNATVRDNILFG-Q 733
Cdd:PRK11248 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPgaergvvfqNEGLLPWRNVQDNVAFGlQ 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 939619619 734 TYDRKRYNKVIDACALRADIDilsagdLTEIGEKGI-NLSGGQKQRISLARAVYSDADLYLLDDPLSAVDA 803
Cdd:PRK11248 97 LAGVEKMQRLEIAHQMLKKVG------LEGAEKRYIwQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
1336-1486 |
2.86e-10 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 61.93 E-value: 2.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1336 GEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGV--DIASMGLHM--LRSRLTIIPQDPVLFSG-SLRINL------ 1404
Cdd:cd03297 23 EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTvlFDSRKKINLppQQRKIGLVFQQYALFPHlNVRENLafglkr 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1405 -DPFEIK-TDDEIWKALELSHLksfvkslaagLNHEIAEggenLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDD 1482
Cdd:cd03297 103 kRNREDRiSVDELLDLLGLDHL----------LNRYPAQ----LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRL 168
|
....
gi 939619619 1483 LIQI 1486
Cdd:cd03297 169 QLLP 172
|
|
| ABC_6TM_TmrA_like |
cd18544 |
Six-transmembrane helical domain (TmrA) of the heterodimeric Thermus thermophilus multidrug ... |
988-1279 |
2.96e-10 |
|
Six-transmembrane helical domain (TmrA) of the heterodimeric Thermus thermophilus multidrug resistance proteins TmrAB, and similar proteins; This group represents the six-transmembrane helical domain (TrmA) of the heterodimeric Thermus thermophilus multidrug resistance proteins A and B (TmrAB), a homolog of the Antigen Translocation Complex Tap, and similar proteins. TmrAB has been shown to able to restore antigen processing in human TAP-deficient cells. The 6-transmembrane (TM) helices typically found in the ATP-binding cassette (ABC) transporters that function as exporters, which contain 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds and a various type of lipids. ABC transporters typically consist of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The sequences and structures of the TMDs are quite varied between the different type of transporters, suggesting significant structural diversity of the translocated substrates, while NBDs are conserved among all ABC transporters. The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane. However, some ABC genes are organized as half-transporters, which must form either homodimers or heterodimers to form a functional transporter. The ABC exporters play a role in multidrug resistance to antibiotics and anticancer agents, and mutations in these proteins have been shown to cause severe human diseases such as cystic fibrosis.
Pssm-ID: 349988 [Multi-domain] Cd Length: 294 Bit Score: 63.18 E-value: 2.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 988 IFLSVATLVLNFVFQAFQIgsnlWLTQWANDQNVANDTGLRDM---YLGVYGAFGFGQVATNFFSSLAISLGCLKCSQLL 1064
Cdd:cd18544 1 FILALLLLLLATALELLGP----LLIKRAIDDYIVPGQGDLQGlllLALLYLGLLLLSFLLQYLQTYLLQKLGQRIIYDL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1065 HQTLLYYNLRWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIVV-ISLS---TPIFLAVIVPIAF 1140
Cdd:cd18544 77 RRDLFSHIQRLPLSFFDRTPVGRLVTRVTNDTEALNELFTSGLVTLIGDLLLLIGILIAmFLLNwrlALISLLVLPLLLL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1141 LYYFAQRFyvatSRQLMRLESVSRSPIYSHFSETVTGASTIRAYNVGDRFIEESDAKVDKNQVCKYPSVIANRWLAIRLE 1220
Cdd:cd18544 157 ATYLFRKK----SRKAYREVREKLSRLNAFLQESISGMSVIQLFNREKREFEEFDEINQEYRKANLKSIKLFALFRPLVE 232
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 939619619 1221 MVGNLIIlfASLFAVLGGQTNPGLVGLSVSYA-LQVTQTLNWLVRMSSD----IETNIVSVERI 1279
Cdd:cd18544 233 LLSSLAL--ALVLWYGGGQVLSGAVTLGVLYAfIQYIQRFFRPIRDLAEkfniLQSAMASAERI 294
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
650-854 |
3.43e-10 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 62.45 E-value: 3.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSW--GDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKLAYVPQQAW-------- 719
Cdd:TIGR04520 2 EVENVSFSYpeSEKPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLDTLDEENLWeirkkvgm 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 720 -IQN-------ATVRDNILFG---QTYDRKRYNKVIDacalradiDILSAGDLTEIGEKG-INLSGGQKQRISLARAVYS 787
Cdd:TIGR04520 82 vFQNpdnqfvgATVEDDVAFGlenLGVPREEMRKRVD--------EALKLVGMEDFRDREpHLLSGGQKQRVAIAGVLAM 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 939619619 788 DADLYLLDDPLSAVDAhVGKhifEEVIgpKGILA-RKSR----VLVTHGVTFLPQVDSIYVIKMGEISESGT 854
Cdd:TIGR04520 154 RPDIIILDEATSMLDP-KGR---KEVL--ETIRKlNKEEgitvISITHDMEEAVLADRVIVMNKGKIVAEGT 219
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1309-1477 |
3.50e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 62.46 E-value: 3.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTI 1388
Cdd:PRK13648 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1389 IPQDPV-LFSGS---------LRINLDPFEiKTDDEIWKALELshlksfVKSLAAGlNHEiaegGENLSVGQRQLVCLAR 1458
Cdd:PRK13648 88 VFQNPDnQFVGSivkydvafgLENHAVPYD-EMHRRVSEALKQ------VDMLERA-DYE----PNALSGGQKQRVAIAG 155
|
170
....*....|....*....
gi 939619619 1459 ALLRKTKVLVLDEATAAVD 1477
Cdd:PRK13648 156 VLALNPSVIILDEATSMLD 174
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1329-1477 |
4.17e-10 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 64.18 E-value: 4.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1329 VSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAA-GGRISIDG--VDIAS------MGLHML---RSRLTIIPQDPV-- 1394
Cdd:PRK13549 281 VSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRwEGEIFIDGkpVKIRNpqqaiaQGIAMVpedRKRDGIVPVMGVgk 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1395 --------LFSGSLRINlDPFEIKTDDEiwkalELSHLKsfVKSLAAGLnhEIAeggeNLSVGQRQLVCLARALLRKTKV 1466
Cdd:PRK13549 361 nitlaaldRFTGGSRID-DAAELKTILE-----SIQRLK--VKTASPEL--AIA----RLSGGNQQKAVLAKCLLLNPKI 426
|
170
....*....|.
gi 939619619 1467 LVLDEATAAVD 1477
Cdd:PRK13549 427 LILDEPTRGID 437
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
1313-1478 |
4.19e-10 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 63.20 E-value: 4.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1313 NFQVRyREGLDLVlrgVSFNIQGGEKVGIVGRTGAGKSSLtlalFRIIeaAG------GRISIDG---VDIASmGLHML- 1382
Cdd:COG4148 6 DFRLR-RGGFTLD---VDFTLPGRGVTALFGPSGSGKTTL----LRAI--AGlerpdsGRIRLGGevlQDSAR-GIFLPp 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1383 -RSRLTIIPQDPVLFSG-SLRINLD-------PFEIKTD-DEIWKALELSHLksfvkslaagLNHEIAeggeNLSVGQRQ 1452
Cdd:COG4148 75 hRRRIGYVFQEARLFPHlSVRGNLLygrkrapRAERRISfDEVVELLGIGHL----------LDRRPA----TLSGGERQ 140
|
170 180
....*....|....*....|....*.
gi 939619619 1453 LVCLARALLRKTKVLVLDEATAAVDL 1478
Cdd:COG4148 141 RVAIGRALLSSPRLLLMDEPLAALDL 166
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
664-861 |
4.33e-10 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 61.54 E-value: 4.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK--------------LAYVPQQAWI-QNATVRDN 728
Cdd:COG0410 19 LHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEditglpphriarlgIGYVPEGRRIfPSLTVEEN 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 729 ILFGqTYDRKrynkviDACALRADIDilsagdltEIGE-----------KGINLSGGQKQRISLARAVYSDADLYLLDDP 797
Cdd:COG0410 99 LLLG-AYARR------DRAEVRADLE--------RVYElfprlkerrrqRAGTLSGGEQQMLAIGRALMSRPKLLLLDEP 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 939619619 798 ---LSAVdahVGKHIFEevigpkgILAR-KSR----VLVTHGVTFLPQV-DSIYVIKMGEISESGTFDQLVKN 861
Cdd:COG0410 164 slgLAPL---IVEEIFE-------IIRRlNREgvtiLLVEQNARFALEIaDRAYVLERGRIVLEGTAAELLAD 226
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
656-830 |
4.78e-10 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 61.37 E-value: 4.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 656 FSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVnTVGK-------------LAYVPQQawiqN 722
Cdd:cd03263 10 YKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA-YINGysirtdrkaarqsLGYCPQF----D 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 723 A-----TVRDNILF-------GQTYDRKRYNKVIDACALRADIDilsagdlTEIGekgiNLSGGQKQRISLARAVYSDAD 790
Cdd:cd03263 85 AlfdelTVREHLRFyarlkglPKSEIKEEVELLLRVLGLTDKAN-------KRAR----TLSGGMKRKLSLAIALIGGPS 153
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 939619619 791 LYLLDDPLSAVDaHVGKHIFEEVIgpKGILARKSRVLVTH 830
Cdd:cd03263 154 VLLLDEPTSGLD-PASRRAIWDLI--LEVRKGRSIILTTH 190
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
664-861 |
4.84e-10 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 61.69 E-value: 4.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAfLGEMEKLAGVVNTVGKL------AYVPQQAWI-----------QN---- 722
Cdd:PRK11264 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRC-INLLEQPEAGTIRVGDItidtarSLSQQKGLIrqlrqhvgfvfQNfnlf 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 723 --ATVRDNILFGQTYDRK--RYNKVIDACALRADIDIlsAGDLTEIGEKginLSGGQKQRISLARAVYSDADLYLLDDPL 798
Cdd:PRK11264 98 phRTVLENIIEGPVIVKGepKEEATARARELLAKVGL--AGKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPT 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 939619619 799 SAVDAH-VGkhifeEVIGPKGILARKSR--VLVTHGVTFLPQV-DSIYVIKMGEISESGTFDQLVKN 861
Cdd:PRK11264 173 SALDPElVG-----EVLNTIRQLAQEKRtmVIVTHEMSFARDVaDRAIFMDQGRIVEQGPAKALFAD 234
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
1309-1480 |
4.90e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 62.31 E-value: 4.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDlVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMG-LHMLRSRLT 1387
Cdd:PRK13644 2 IRLENVSYSYPDGTP-ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSkLQGIRKLVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1388 IIPQDPV-----------LFSGSLRINLDPFEIKtddeiwkalelshlKSFVKSLA-AGLNHEIAEGGENLSVGQRQLVC 1455
Cdd:PRK13644 81 IVFQNPEtqfvgrtveedLAFGPENLCLPPIEIR--------------KRVDRALAeIGLEKYRHRSPKTLSGGQGQCVA 146
|
170 180
....*....|....*....|....*
gi 939619619 1456 LARALLRKTKVLVLDEATAAVDLET 1480
Cdd:PRK13644 147 LAGILTMEPECLIFDEVTSMLDPDS 171
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
1315-1477 |
4.96e-10 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 63.51 E-value: 4.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1315 QVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMG-----------LHMLR 1383
Cdd:PRK10070 33 QILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISdaelrevrrkkIAMVF 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1384 SRLTIIPQDPVLFSGSLRINLDPFEIKTDDEiwKALELSHlksfvkslAAGLNHEIAEGGENLSVGQRQLVCLARALLRK 1463
Cdd:PRK10070 113 QSFALMPHMTVLDNTAFGMELAGINAEERRE--KALDALR--------QVGLENYAHSYPDELSGGMRQRVGLARALAIN 182
|
170
....*....|....
gi 939619619 1464 TKVLVLDEATAAVD 1477
Cdd:PRK10070 183 PDILLMDEAFSALD 196
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
1253-1490 |
5.20e-10 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 64.55 E-value: 5.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1253 LQVTQTLNWLVRMSSDIETNIVSVE--------RIKEYGETKQE-------APWE---------LEQDKNKPKNWPQEGR 1308
Cdd:TIGR01271 349 MTVTRQFPGAIQTWYDSLGAITKIQdflckeeyKTLEYNLTTTEvemvnvtASWDegigelfekIKQNNKARKQPNGDDG 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREgldlVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGvdiasmglhmlrsRLTI 1388
Cdd:TIGR01271 429 LFFSNFSLYVTP----VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISF 491
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1389 IPQDPVLFSGSLRINLdPFEIKTDDEIWKA-LELSHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLRKTKVL 1467
Cdd:TIGR01271 492 SPQTSWIMPGTIKDNI-IFGLSYDEYRYTSvIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLY 570
|
250 260
....*....|....*....|...
gi 939619619 1468 VLDEATAAVDLETDDLIQIRHFC 1490
Cdd:TIGR01271 571 LLDSPFTHLDVVTEKEIFESCLC 593
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1316-1487 |
5.27e-10 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 62.93 E-value: 5.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1316 VRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGlHMLRSRLTIIPQ-DPV 1394
Cdd:PRK13536 47 VSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIGVVPQfDNL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1395 LFSGSLRINL----DPFEIKTDD---EIWKALELSHLKSFVKSLAAglnheiaeggeNLSVGQRQLVCLARALLRKTKVL 1467
Cdd:PRK13536 126 DLEFTVRENLlvfgRYFGMSTREieaVIPSLLEFARLESKADARVS-----------DLSGGMKRRLTLARALINDPQLL 194
|
170 180
....*....|....*....|
gi 939619619 1468 VLDEATAAVDLETDDLIQIR 1487
Cdd:PRK13536 195 ILDEPTTGLDPHARHLIWER 214
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1325-1471 |
5.32e-10 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 62.43 E-value: 5.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSltlaLFRII----EAAGGRISIDG-----VDIASMGlHM-----LRSRLTIIP 1390
Cdd:COG4152 16 AVDDVSFTVPKGEIFGLLGPNGAGKTT----TIRIIlgilAPDSGEVLWDGepldpEDRRRIG-YLpeergLYPKMKVGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1391 QdpVLFSGSLRiNLDPFEIKTDDEIW-KALELSHLKsfvkslaaglNHEIaeggENLSVGQRQLVCLARALLRKTKVLVL 1469
Cdd:COG4152 91 Q--LVYLARLK-GLSKAEAKRRADEWlERLGLGDRA----------NKKV----EELSKGNQQKVQLIAALLHDPELLIL 153
|
..
gi 939619619 1470 DE 1471
Cdd:COG4152 154 DE 155
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
279-864 |
6.30e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 64.23 E-value: 6.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 279 QNVRKNYKNKARVEPKAQFSNGNVTFENPHGEKNG---------RKKGMAS--IMPPIYKSFGGVFLFGALMK--LFTDT 345
Cdd:PLN03232 847 QEVNTNDENILKLGPTVTIDVSERNLGSTKQGKRGrsvlvkqeeRETGIISwnVLMRYNKAVGGLWVVMILLVcyLTTEV 926
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 346 LTFAQPQVLSLIISFVEAQDAEPEWKGILYAVLLF----VLAAAQTFILGQYFHrmfiVGLRIRTALINAIYRKAL---- 417
Cdd:PLN03232 927 LRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFgqvaVTFTNSFWLISSSLH----AAKRLHDAMLNSILRAPMlffh 1002
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 418 -----RISNSTKKEstVGEIVNLMAVDAQRFMELttylnmiwsaplqiglalyfLWQQLGPSVLAGLAVMIIL---IPVN 489
Cdd:PLN03232 1003 tnptgRVINRFSKD--IGDIDRNVANLMNMFMNQ--------------------LWQLLSTFALIGTVSTISLwaiMPLL 1060
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 490 GVIASRIKTYQ--IRQMKYKDERVK-----LMNEVLSG---IKVLKLYAWEPSFEKQVLD--IRdKEIATLRSTAYL--- 554
Cdd:PLN03232 1061 ILFYAAYLYYQstSREVRRLDSVTRspiyaQFGEALNGlssIRAYKAYDRMAKINGKSMDnnIR-FTLANTSSNRWLtir 1139
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 555 --NAGTSFLWSCAPFLVsLVTFATyvlidENNVLDATKTFVSLSL-FNILrfplTMLPMLITNLVQTQVSVNRINKFLNS 631
Cdd:PLN03232 1140 leTLGGVMIWLTATFAV-LRNGNA-----ENQAGFASTMGLLLSYtLNIT----TLLSGVLRQASKAENSLNSVERVGNY 1209
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 632 EELDPNSVLHDSSKPHPMSIENGEFSWGDEITLR----------NINIEVKKGSLVALVGTVGSGKSSVVQAF--LGEME 699
Cdd:PLN03232 1210 IDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRyrpglppvlhGLSFFVSPSEKVGVVGRTGAGKSSMLNALfrIVELE 1289
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 700 K-----------LAGVVNTVGKLAYVPQQAWIQNATVRDNI-LFGQTYDRKRYnKVIDACALRADIDILSAGDLTEIGEK 767
Cdd:PLN03232 1290 KgrimiddcdvaKFGLTDLRRVLSIIPQSPVLFSGTVRFNIdPFSEHNDADLW-EALERAHIKDVIDRNPFGLDAEVSEG 1368
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 768 GINLSGGQKQRISLARAVYSDADLYLLDDPLSAV----DAHVGKHIFEEvigpkgiLARKSRVLVTHGVTFLPQVDSIYV 843
Cdd:PLN03232 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVdvrtDSLIQRTIREE-------FKSCTMLVIAHRLNTIIDCDKILV 1441
|
650 660
....*....|....*....|.
gi 939619619 844 IKMGEISESGTFDQLVKNKGA 864
Cdd:PLN03232 1442 LSSGQVLEYDSPQELLSRDTS 1462
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
664-849 |
6.70e-10 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 59.75 E-value: 6.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK--------------LAYVP----QQAWIQNATV 725
Cdd:cd03215 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKpvtrrsprdairagIAYVPedrkREGLVLDLSV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 726 RDNILFGQTydrkrynkvidacalradidilsagdlteigekginLSGGQKQRISLARAVYSDADLYLLDDPLSAVDahV 805
Cdd:cd03215 96 AENIALSSL------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVD--V 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 939619619 806 G--KHIFEEVIgpkgILARKSR--VLVThgvTFLPQV----DSIYVIKMGEI 849
Cdd:cd03215 138 GakAEIYRLIR----ELADAGKavLLIS---SELDELlglcDRILVMYEGRI 182
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
670-800 |
7.15e-10 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 63.67 E-value: 7.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 670 EVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKLAYVPQqaWI---QNATVRDnILFGQT--YDRKRYNkvi 744
Cdd:PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQ--YIkpdYDGTVED-LLRSITddLGSSYYK--- 434
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 939619619 745 dacalradIDILSAGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADLYLLDDPlSA 800
Cdd:PRK13409 435 --------SEIIKPLQLERLLDKNVKdLSGGELQRVAIAACLSRDADLYLLDEP-SA 482
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
658-829 |
7.70e-10 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 60.75 E-value: 7.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 658 WGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEK---LAGVVNTVGK----------LAYVPQQ-AWIQNA 723
Cdd:cd03234 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGggtTSGQILFNGQprkpdqfqkcVAYVRQDdILLPGL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 724 TVRDNILF-----GQTYDRKRYNKVIDACALRADIDILSAGdlteiGEKGINLSGGQKQRISLARAVYSDADLYLLDDPL 798
Cdd:cd03234 97 TVRETLTYtailrLPRKSSDAIRKKRVEDVLLRDLALTRIG-----GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPT 171
|
170 180 190
....*....|....*....|....*....|..
gi 939619619 799 SAVDAHVGKHIFEEVIGpkgiLARKSR-VLVT 829
Cdd:cd03234 172 SGLDSFTALNLVSTLSQ----LARRNRiVILT 199
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
670-802 |
8.05e-10 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 60.88 E-value: 8.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 670 EVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNT-VGKLAYVPQQAWI-QNATVRDnILFGQT---YDRKRYNkvi 744
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIeLDTVSYKPQYIKAdYEGTVRD-LLSSITkdfYTHPYFK--- 96
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 939619619 745 dacalradIDILSAGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADLYLLDDPLSAVD 802
Cdd:cd03237 97 --------TEIAKPLQIEQILDREVPeLSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
652-830 |
8.18e-10 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 61.34 E-value: 8.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 652 ENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAF-----LGEMEKLAGVVNTVGKLAYVPQqawIQNATVR 726
Cdd:PRK14243 14 ENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFnrlndLIPGFRVEGKVTFHGKNLYAPD---VDPVEVR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 727 DNIlfGQTYDRKR-YNKVI-DACALRADIDILSaGDLTEIGEK------------------GINLSGGQKQRISLARAVY 786
Cdd:PRK14243 91 RRI--GMVFQKPNpFPKSIyDNIAYGARINGYK-GDMDELVERslrqaalwdevkdklkqsGLSLSGGQQQRLCIARAIA 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 939619619 787 SDADLYLLDDPLSAVDAHVGKHIfEEVIgpKGILARKSRVLVTH 830
Cdd:PRK14243 168 VQPEVILMDEPCSALDPISTLRI-EELM--HELKEQYTIIIVTH 208
|
|
| ABC_6TM_exporter_like |
cd18540 |
Six-transmembrane helical domain (TMD) of an uncharacterized ABC exporter, and similar ... |
1012-1279 |
8.38e-10 |
|
Six-transmembrane helical domain (TMD) of an uncharacterized ABC exporter, and similar proteins; This group includes a subunit of six transmembrane (TM) helices typically found in the ATP-binding cassette (ABC) transporters that function as exporters, which contain 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds and a various type of lipids. ABC transporters typically consist of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The sequences and structures of the TMDs are quite varied between the different type of transporters, suggesting the chemical diversity of the translocated substrates, while NBDs are conserved among all ABC transporters. The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane. However, some ABC genes are organized as half-transporters, which must form either homodimers or heterodimers to form a functional transporter. The ABC exporters play a role in multidrug resistance to antibiotics and anticancer agents, and mutations in these proteins have been shown to cause severe human diseases such as cystic fibrosis.
Pssm-ID: 349984 [Multi-domain] Cd Length: 295 Bit Score: 61.73 E-value: 8.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1012 LTQWANDQNVANDT--GLRdMYLGVYGAFGFGQVATNF-FSSLAISLgclkcsqllhQTLLYYNLR---------WPMEL 1079
Cdd:cd18540 24 LTKYAIDHFITPGTldGLT-GFILLYLGLILIQALSVFlFIRLAGKI----------EMGVSYDLRkkafehlqtLSFSY 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1080 FDTTPLGRIVNRFSKDIDTIDNVLPFN-IRVVIGQAYMVLATIVVISLS---TPIFLAVIVPIAFLYYFAQRFYVATSRQ 1155
Cdd:cd18540 93 FDKTPVGWIMARVTSDTQRLGEIISWGlVDLVWGITYMIGILIVMLILNwklALIVLAVVPVLAVVSIYFQKKILKAYRK 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1156 LMRLESVsrspIYSHFSETVTGASTIRAYNVGDRFIEESDAKVDKnqvCKYPSVIANRWLAIRLEMVGNL------IILF 1229
Cdd:cd18540 173 VRKINSR----ITGAFNEGITGAKTTKTLVREEKNLREFKELTEE---MRRASVRAARLSALFLPIVLFLgsiataLVLW 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 939619619 1230 ASLFAVLGGQTNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERI 1279
Cdd:cd18540 246 YGGILVLAGAITIGTLVAFISYATQFFEPIQQLARVLAELQSAQASAERV 295
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
1316-1485 |
9.10e-10 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 61.23 E-value: 9.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1316 VRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLtLALFRIIEAAGGRISIDGvdiaSMGLHMLRSRLTIIPQDPVL 1395
Cdd:PRK11247 18 VSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTL-LRLLAGLETPSAGELLAG----TAPLAEAREDTRLMFQDARL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1396 FSGSLRINLDPFEIKTDdeiWKALELSHLKsfvkslAAGLNHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAA 1475
Cdd:PRK11247 93 LPWKKVIDNVGLGLKGQ---WRDAALQALA------AVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGA 163
|
170
....*....|....
gi 939619619 1476 VD----LETDDLIQ 1485
Cdd:PRK11247 164 LDaltrIEMQDLIE 177
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
664-830 |
1.01e-09 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 60.36 E-value: 1.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKL--AGVVNtvgklayVPQQAWIQNATVRDNILFGQTYDRKRYn 741
Cdd:COG2401 46 LRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTpvAGCVD-------VPDNQFGREASLIDAIGRKGDFKDAVE- 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 742 kVIDACALrADIDILSAgdlteigeKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVD---AHVGKHIFEEvigpkg 818
Cdd:COG2401 118 -LLNAVGL-SDAVLWLR--------RFKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDrqtAKRVARNLQK------ 181
|
170
....*....|....*
gi 939619619 819 iLARKSR---VLVTH 830
Cdd:COG2401 182 -LARRAGitlVVATH 195
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
656-814 |
1.11e-09 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 60.11 E-value: 1.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 656 FSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK-LAYVPQQAWIQNA----------- 723
Cdd:PRK10247 15 YLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEdISTLKPEIYRQQVsycaqtptlfg 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 724 -TVRDNILF-----GQTYDRKrynkvidacALRADIDILSAGDltEIGEKGIN-LSGGQKQRISLARAVYSDADLYLLDD 796
Cdd:PRK10247 95 dTVYDNLIFpwqirNQQPDPA---------IFLDDLERFALPD--TILTKNIAeLSGGEKQRISLIRNLQFMPKVLLLDE 163
|
170
....*....|....*...
gi 939619619 797 PLSAVDAHvGKHIFEEVI 814
Cdd:PRK10247 164 ITSALDES-NKHNVNEII 180
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
1309-1480 |
1.12e-09 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 58.23 E-value: 1.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYreGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLtlalfriieaaggrisidgvdiasmgLHMLRSRLTI 1388
Cdd:cd03221 1 IELENLSKTY--GGKLLLKDISLTINPGDRIGLVGRNGAGKSTL--------------------------LKLIAGELEP 52
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1389 IpqdpvlfSGSLRINldpfeiktddeiwKALELSHLksfvkslaaglnheiaeggENLSVGQRQLVCLARALLRKTKVLV 1468
Cdd:cd03221 53 D-------EGIVTWG-------------STVKIGYF-------------------EQLSGGEKMRLALAKLLLENPNLLL 93
|
170
....*....|..
gi 939619619 1469 LDEATAAVDLET 1480
Cdd:cd03221 94 LDEPTNHLDLES 105
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
664-811 |
1.12e-09 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 60.80 E-value: 1.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLG----------EMEKLAGVVNTVGKLA-----------YVPQQAWIQN 722
Cdd:PRK09984 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGlitgdksagsHIELLGRTVQREGRLArdirksrantgYIFQQFNLVN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 723 A-TVRDNILFGQTYDRKRYNKVIDACALRADIDILSAgdLTEIG------EKGINLSGGQKQRISLARAVYSDADLYLLD 795
Cdd:PRK09984 100 RlSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQA--LTRVGmvhfahQRVSTLSGGQQQRVAIARALMQQAKVILAD 177
|
170
....*....|....*.
gi 939619619 796 DPLSAVDAHVGKHIFE 811
Cdd:PRK09984 178 EPIASLDPESARIVMD 193
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
664-804 |
1.14e-09 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 60.94 E-value: 1.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK-------------LAYVPQQAWIQNA-TVRDNI 729
Cdd:PRK13548 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRpladwspaelarrRAVLPQHSSLSFPfTVEEVV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 730 LFGQ---TYDRKRYNKVIDACALRADIDILSAGDLTEigekginLSGGQKQRISLARA---VYSDAD---LYLLDDPLSA 800
Cdd:PRK13548 98 AMGRaphGLSRAEDDALVAAALAQVDLAHLAGRDYPQ-------LSGGEQQRVQLARVlaqLWEPDGpprWLLLDEPTSA 170
|
....*
gi 939619619 801 VD-AH 804
Cdd:PRK13548 171 LDlAH 175
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1329-1478 |
1.26e-09 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 62.53 E-value: 1.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1329 VSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAA-GGRISIDG--VDIASMgLHMLRSRLTIIPQD-------PVL--- 1395
Cdd:TIGR02633 279 VSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKfEGNVFINGkpVDIRNP-AQAIRAGIAMVPEDrkrhgivPILgvg 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1396 ----------FSGSLRINldpfEIKTDDEIWKALELSHLKSFVKSLAAGlnheiaeggeNLSVGQRQLVCLARALLRKTK 1465
Cdd:TIGR02633 358 knitlsvlksFCFKMRID----AAAELQIIGSAIQRLKVKTASPFLPIG----------RLSGGNQQKAVLAKMLLTNPR 423
|
170
....*....|...
gi 939619619 1466 VLVLDEATAAVDL 1478
Cdd:TIGR02633 424 VLILDEPTRGVDV 436
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1308-1477 |
1.27e-09 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 61.66 E-value: 1.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1308 RVEFQNfqvryREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIeAAGGRIS----IDGVDIASM---GLH 1380
Cdd:PRK09473 19 RVTFST-----PDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL-AANGRIGgsatFNGREILNLpekELN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1381 MLRS-RLTIIPQDPVlfsgslrINLDPFeIKTDDEIWKALEL----SHLKSF---VKSLAA-----------GLNHEiae 1441
Cdd:PRK09473 93 KLRAeQISMIFQDPM-------TSLNPY-MRVGEQLMEVLMLhkgmSKAEAFeesVRMLDAvkmpearkrmkMYPHE--- 161
|
170 180 190
....*....|....*....|....*....|....*.
gi 939619619 1442 ggenLSVGQRQLVCLARALLRKTKVLVLDEATAAVD 1477
Cdd:PRK09473 162 ----FSGGMRQRVMIAMALLCRPKLLIADEPTTALD 193
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
649-830 |
1.29e-09 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 60.56 E-value: 1.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 649 MSIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAfLGEMEKLAGVVNTVGKLAY--------------- 713
Cdd:PRK14239 6 LQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRS-INRMNDLNPEVTITGSIVYnghniysprtdtvdl 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 714 ------VPQQAWIQNATVRDNILFG----QTYDRKRYNKVIDACALRADI-----DILSagdlteigEKGINLSGGQKQR 778
Cdd:PRK14239 85 rkeigmVFQQPNPFPMSIYENVVYGlrlkGIKDKQVLDEAVEKSLKGASIwdevkDRLH--------DSALGLSGGQQQR 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 939619619 779 ISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEEVIGPKgilARKSRVLVTH 830
Cdd:PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK---DDYTMLLVTR 205
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
649-804 |
1.36e-09 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 60.51 E-value: 1.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 649 MSIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK-------------LAYVP 715
Cdd:COG4559 2 LEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRplaawspwelarrRAVLP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 716 QQAWIQNA-TVRDNILFG---QTYDRKRYNKVIDACALRADIDILSAGDLTEigekginLSGGQKQRISLARA------- 784
Cdd:COG4559 82 QHSSLAFPfTVEEVVALGrapHGSSAAQDRQIVREALALVGLAHLAGRSYQT-------LSGGEQQRVQLARVlaqlwep 154
|
170 180
....*....|....*....|.
gi 939619619 785 VYSDADLYLLDDPLSAVD-AH 804
Cdd:COG4559 155 VDGGPRWLFLDEPTSALDlAH 175
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
1305-1484 |
1.42e-09 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 62.84 E-value: 1.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1305 QEGRVEFQNFQVRYREGlDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLtlalFRII----EAAGGRISIDGvdiasmglh 1380
Cdd:TIGR00954 448 QDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNNLLICGPNGCGKSSL----FRILgelwPVYGGRLTKPA--------- 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1381 mlRSRLTIIPQDPVLFSGSLR---INLD-PFEIK----TDDEIWKALELSHLKSFVK---SLAAglnheIAEGGENLSVG 1449
Cdd:TIGR00954 514 --KGKLFYVPQRPYMTLGTLRdqiIYPDsSEDMKrrglSDKDLEQILDNVQLTHILEregGWSA-----VQDWMDVLSGG 586
|
170 180 190
....*....|....*....|....*....|....*
gi 939619619 1450 QRQLVCLARALLRKTKVLVLDEATAAVDLETDDLI 1484
Cdd:TIGR00954 587 EKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYM 621
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
1324-1477 |
1.46e-09 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 59.43 E-value: 1.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1324 LVLRGVSFNIQGGEKVGIVGRTGAGKSSLtlalFRII----EAAGGRISIDGVDIASMGLHMLR------------SRLT 1387
Cdd:PRK13538 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSL----LRILaglaRPDAGEVLWQGEPIRRQRDEYHQdllylghqpgikTELT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1388 iiPQDPVLFSGSLRINLDpfeiktDDEIWKALElshlksfvkslAAGLnheiaEGGEN-----LSVGQRQLVCLARALLR 1462
Cdd:PRK13538 91 --ALENLRFYQRLHGPGD------DEALWEALA-----------QVGL-----AGFEDvpvrqLSAGQQRRVALARLWLT 146
|
170
....*....|....*
gi 939619619 1463 KTKVLVLDEATAAVD 1477
Cdd:PRK13538 147 RAPLWILDEPFTAID 161
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
664-870 |
1.71e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 60.56 E-value: 1.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVN--------------------TVGKLAYVPQQAWIQNa 723
Cdd:PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTvdditithktkdkyirpvrkRIGMVFQFPESQLFED- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 724 TVRDNILFGQtydrKRYNKVIDACALRADIDILSAGDLTEIGEKG-INLSGGQKQRISLARAVYSDADLYLLDDPLSAVD 802
Cdd:PRK13646 102 TVEREIIFGP----KNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSpFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLD 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 939619619 803 AHvGKHIFEEVIGPKGILARKSRVLVTHGVTFLPQ-VDSIYVIKMGEISESGTFDQLVKNKGAFADFII 870
Cdd:PRK13646 178 PQ-SKRQVMRLLKSLQTDENKTIILVSHDMNEVARyADEVIVMKEGSIVSQTSPKELFKDKKKLADWHI 245
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
648-802 |
1.85e-09 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 60.03 E-value: 1.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 648 PMSIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK-------------LAYV 714
Cdd:PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKpismlssrqlarrLALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 715 PQQAWI-QNATVRDNILFGQ-----------TYDRKRYNKVIDacalRADIDILSAGDLTEigekginLSGGQKQRISLA 782
Cdd:PRK11231 82 PQHHLTpEGITVRELVAYGRspwlslwgrlsAEDNARVNQAME----QTRINHLADRRLTD-------LSGGQRQRAFLA 150
|
170 180
....*....|....*....|
gi 939619619 783 RAVYSDADLYLLDDPLSAVD 802
Cdd:PRK11231 151 MVLAQDTPVVLLDEPTTYLD 170
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1324-1477 |
2.06e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 60.49 E-value: 2.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1324 LVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMG-LHMLRSRLTIIPQDP--------- 1393
Cdd:PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEEnLWDIRNKAGMVFQNPdnqivativ 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1394 ---VLFsGSLRINLDPFEIKTD-DEIWKALELSHLKSFVKSLaaglnheiaeggenLSVGQRQLVCLARALLRKTKVLVL 1469
Cdd:PRK13633 104 eedVAF-GPENLGIPPEEIRERvDESLKKVGMYEYRRHAPHL--------------LSGGQKQRVAIAGILAMRPECIIF 168
|
....*...
gi 939619619 1470 DEATAAVD 1477
Cdd:PRK13633 169 DEPTAMLD 176
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
670-800 |
2.18e-09 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 62.11 E-value: 2.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 670 EVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKLAYVPQqaWI---QNATVRDNIlfgqtydRKRYNKVIDA 746
Cdd:COG1245 362 EIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVDEDLKISYKPQ--YIspdYDGTVEEFL-------RSANTDDFGS 432
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 939619619 747 CALRADIdiLSAGDLTEIGEKGI-NLSGGQKQRISLARAVYSDADLYLLDDPlSA 800
Cdd:COG1245 433 SYYKTEI--IKPLGLEKLLDKNVkDLSGGELQRVAIAACLSRDADLYLLDEP-SA 484
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
1315-1479 |
2.21e-09 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 59.98 E-value: 2.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1315 QVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASM-------------GLHM 1381
Cdd:PRK10619 10 DLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVrdkdgqlkvadknQLRL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1382 LRSRLTIIPQDPVLFSgslriNLDPFEIKTDDEIwKALELSHLKS---FVKSLAAGLNHEIAEGG--ENLSVGQRQLVCL 1456
Cdd:PRK10619 90 LRTRLTMVFQHFNLWS-----HMTVLENVMEAPI-QVLGLSKQEArerAVKYLAKVGIDERAQGKypVHLSGGQQQRVSI 163
|
170 180
....*....|....*....|...
gi 939619619 1457 ARALLRKTKVLVLDEATAAVDLE 1479
Cdd:PRK10619 164 ARALAMEPEVLLFDEPTSALDPE 186
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
664-872 |
2.61e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 60.13 E-value: 2.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNT--------------------VGKLAYVPQQAWIQNA 723
Cdd:PRK13643 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVgdivvsstskqkeikpvrkkVGVVFQFPESQLFEET 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 724 TVRDnILFG-QTYD-RKRYNKVIDACALRAdidilsAGDLTEIGEKG-INLSGGQKQRISLARAVYSDADLYLLDDPLSA 800
Cdd:PRK13643 102 VLKD-VAFGpQNFGiPKEKAEKIAAEKLEM------VGLADEFWEKSpFELSGGQMRRVAIAGILAMEPEVLVLDEPTAG 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 939619619 801 VD--AHVGKHIFEEVIGPKGilarKSRVLVTHGVTFLPQ-VDSIYVIKMGEISESGTFDQLVKNkgafADFIIQH 872
Cdd:PRK13643 175 LDpkARIEMMQLFESIHQSG----QTVVLVTHLMDDVADyADYVYLLEKGHIISCGTPSDVFQE----VDFLKAH 241
|
|
| ABC_6TM_TAP_ABCB8_10_like |
cd18557 |
Six-transmembrane helical domain (6-TMD) of the ABC transporter TAP, ABCB8 and ABCB10; This ... |
1073-1279 |
3.01e-09 |
|
Six-transmembrane helical domain (6-TMD) of the ABC transporter TAP, ABCB8 and ABCB10; This group includes ABC transporter associated with antigen processing (TAP), which is essential to cellular immunity against viral infection, as well as ABCB8 and ABCB10, which are found in the inner membrane of mitochondria, with the nucleotide-binding domains (NBDs) inside the mitochondrial matrix. TAP is involved in the transport of antigens from the cytoplasm to the endoplasmic reticulum(ER) for association with MHC class I molecules, which play a central role in the adaptive immune response to viruses and cancers by presenting antigenic peptides to CD8+ cytotoxic T lymphocytes (CTLs). Mammalian ABCB10 is essential for erythropoiesis and for protection of mitochondria against oxidative stress, while ABCB8 is essential for normal cardiac function, maintenance of mitochondrial iron homeostasis and maturation of cytosolic Fe/S proteins.
Pssm-ID: 350001 [Multi-domain] Cd Length: 289 Bit Score: 59.88 E-value: 3.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1073 LRWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVL-ATIVVISLS---TPIFLAVIVPIAFLYYFAQRF 1148
Cdd:cd18557 80 LRQEIAFFDKHKTGELTSRLSSDTSVLQSAVTDNLSQLLRNILQVIgGLIILFILSwklTLVLLLVIPLLLIASKIYGRY 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1149 YVATSRQLmrLESVSRSPiySHFSETVTGASTIRAYNVGDRFIEESDAKVDKNQVCKYPSVIAN---RWLAIRLEMVGNL 1225
Cdd:cd18557 160 IRKLSKEV--QDALAKAG--QVAEESLSNIRTVRSFSAEEKEIRRYSEALDRSYRLARKKALANalfQGITSLLIYLSLL 235
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 939619619 1226 IILFASLFAVLGGQTNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERI 1279
Cdd:cd18557 236 LVLWYGGYLVLSGQLTVGELTSFILYTIMVASSVGGLSSLLADIMKALGASERV 289
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
452-851 |
3.01e-09 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 61.53 E-value: 3.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 452 MIWSAPLQIGLALYFLWqqLGPSVLAGLAV-MIILIPVNGVIASRIKTYqIRQMKYKDERV-KLMNEVLSGIKVLKL--- 526
Cdd:PRK10522 128 LVQGIILTLGSAAYLAW--LSPKMLLVTAIwMAVTIWGGFVLVARVYKH-MATLRETEDKLyNDYQTVLEGRKELTLnre 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 527 ---YAWEPSFEKQVLDIRDKeiATLRSTAYLNAGTsflWSCAPFL--VSLVTFATYVLIDENNVLDATktfVSLSLFnIL 601
Cdd:PRK10522 205 raeYVFENEYEPDAQEYRHH--IIRADTFHLSAVN---WSNIMMLgaIGLVFYMANSLGWADTNVAAT---YSLTLL-FL 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 602 RFPLT----MLPMLITnlvqTQVSVNRINKFlnseELDPNSvlHDSSKPHP------MSIENGEFSWGDE-ITLRNINIE 670
Cdd:PRK10522 276 RTPLLsavgALPTLLS----AQVAFNKLNKL----ALAPYK--AEFPRPQAfpdwqtLELRNVTFAYQDNgFSVGPINLT 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 671 VKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK-LAYVPQQAWIQ--NATVRDNILFGQTYDRKryNKVIDAC 747
Cdd:PRK10522 346 IKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKpVTAEQPEDYRKlfSAVFTDFHLFDQLLGPE--GKPANPA 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 748 ALRADIDILSAGDLTEIGE---KGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVgKHIFEEVIGPKGILARKS 824
Cdd:PRK10522 424 LVEKWLERLKMAHKLELEDgriSNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHF-RREFYQVLLPLLQEMGKT 502
|
410 420
....*....|....*....|....*..
gi 939619619 825 RVLVTHGVTFLPQVDSIYVIKMGEISE 851
Cdd:PRK10522 503 IFAISHDDHYFIHADRLLEMRNGQLSE 529
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
714-859 |
3.27e-09 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 61.97 E-value: 3.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 714 VPQQAWIQNATVRDNILFG-QTYDRKRYNKVIDACALRADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLY 792
Cdd:PTZ00265 1301 VSQEPMLFNMSIYENIKFGkEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKIL 1380
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 939619619 793 LLDDPLSAVDAHVGKHIFEEVIGPKGiLARKSRVLVTHGVTFLPQVDSIYVI----KMGEISES-GTFDQLV 859
Cdd:PTZ00265 1381 LLDEATSSLDSNSEKLIEKTIVDIKD-KADKTIITIAHRIASIKRSDKIVVFnnpdRTGSFVQAhGTHEELL 1451
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
660-803 |
3.84e-09 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 60.98 E-value: 3.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 660 DEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAflgemekLAG---------VVNTVGKLAYVPQQAWIQNATVRDNIL 730
Cdd:COG4178 375 GRPLLEDLSLSLKPGERLLITGPSGSGKSTLLRA-------IAGlwpygsgriARPAGARVLFLPQRPYLPLGTLREALL 447
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 939619619 731 FGQT---YDRKRYNKVIDACALrADIdilsAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDA 803
Cdd:COG4178 448 YPATaeaFSDAELREALEAVGL-GHL----AERLDEEADWDQVLSLGEQQRLAFARLLLHKPDWLFLDEATSALDE 518
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
649-858 |
3.86e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 59.34 E-value: 3.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 649 MSIENGEFSWGDEITLRNIN---IEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKlAYVPQQAW------ 719
Cdd:PRK13642 5 LEVENLVFKYEKESDVNQLNgvsFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGE-LLTAENVWnlrrki 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 720 ---IQN-------ATVRDNILFGQTYDRKRYNKVIDacalRADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDA 789
Cdd:PRK13642 84 gmvFQNpdnqfvgATVEDDVAFGMENQGIPREEMIK----RVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 939619619 790 DLYLLDDPLSAVDAhVGKHIFEEVIGPKGILARKSRVLVTHGVTFLPQVDSIYVIKMGEISESGTFDQL 858
Cdd:PRK13642 160 EIIILDESTSMLDP-TGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSEL 227
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
659-861 |
4.04e-09 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 60.43 E-value: 4.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 659 GDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG-----------------KLAYVPQQ-AWI 720
Cdd:PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGvdiakisdaelrevrrkKIAMVFQSfALM 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 721 QNATVRDNILFGQTYD----RKRYNKVIDACAlRADIDILSAGDLTEigekginLSGGQKQRISLARAVYSDADLYLLDD 796
Cdd:PRK10070 119 PHMTVLDNTAFGMELAginaEERREKALDALR-QVGLENYAHSYPDE-------LSGGMRQRVGLARALAINPDILLMDE 190
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 939619619 797 PLSAVDAHVGKHIFEEVIGPKGILARkSRVLVTHGVTFLPQV-DSIYVIKMGEISESGTFDQLVKN 861
Cdd:PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQR-TIVFISHDLDEAMRIgDRIAIMQNGEVVQVGTPDEILNN 255
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1325-1488 |
4.18e-09 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 58.97 E-value: 4.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGvdiasmglhmlRSRLTIIPQ----DPVL-FSGS 1399
Cdd:PRK09544 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIGYVPQklylDTTLpLTVN 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1400 LRINLDPFEIKTDdeIWKALelshlksfvKSLAAGlnHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVD-- 1477
Cdd:PRK09544 88 RFLRLRPGTKKED--ILPAL---------KRVQAG--HLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDvn 154
|
170
....*....|....
gi 939619619 1478 --LETDDLI-QIRH 1488
Cdd:PRK09544 155 gqVALYDLIdQLRR 168
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1325-1381 |
4.63e-09 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 58.55 E-value: 4.63e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGvDIASM-----GLHM 1381
Cdd:COG1134 41 ALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNG-RVSALlelgaGFHP 101
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
664-854 |
4.73e-09 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 59.32 E-value: 4.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK--------LAYVPQQAWI--QNA-------TVR 726
Cdd:PRK13639 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEpikydkksLLEVRKTVGIvfQNPddqlfapTVE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 727 DNILFGQTY----DRKRYNKVIDAcalradidilsagdLTEIGEKGI------NLSGGQKQRISLARAVYSDADLYLLDD 796
Cdd:PRK13639 98 EDVAFGPLNlglsKEEVEKRVKEA--------------LKAVGMEGFenkpphHLSGGQKKRVAIAGILAMKPEIIVLDE 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 939619619 797 PLSAVDAHVGKHIFEEV--IGPKGIlarkSRVLVTHGVTFLP-QVDSIYVIKMGEISESGT 854
Cdd:PRK13639 164 PTSGLDPMGASQIMKLLydLNKEGI----TIIISTHDVDLVPvYADKVYVMSDGKIIKEGT 220
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
1309-1477 |
5.03e-09 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 58.70 E-value: 5.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYreGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIE-----AAGGRISIDGVDIASMGLHML- 1382
Cdd:PRK14267 5 IETVNLRVYY--GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLElneeaRVEGEVRLFGRNIYSPDVDPIe 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1383 -RSRLTIIPQDPVLF-------SGSLRINLDPFeIKTDDEIWKALELSHLKSfvkSLAAGLNHEIAEGGENLSVGQRQLV 1454
Cdd:PRK14267 83 vRREVGMVFQYPNPFphltiydNVAIGVKLNGL-VKSKKELDERVEWALKKA---ALWDEVKDRLNDYPSNLSGGQRQRL 158
|
170 180
....*....|....*....|...
gi 939619619 1455 CLARALLRKTKVLVLDEATAAVD 1477
Cdd:PRK14267 159 VIARALAMKPKILLMDEPTANID 181
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
664-831 |
5.56e-09 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 57.75 E-value: 5.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVV----NTVGKLAYVPQQ--AWIQNA-------TVRDNIL 730
Cdd:TIGR01189 16 FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVrwngTPLAEQRDEPHEniLYLGHLpglkpelSALENLH 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 731 FgqtydrkrYNKVIDAcalrADIDILSAgdLTEIGEKGIN------LSGGQKQRISLARAVYSDADLYLLDDPLSAVDAH 804
Cdd:TIGR01189 96 F--------WAAIHGG----AQRTIEDA--LAAVGLTGFEdlpaaqLSAGQQRRLALARLWLSRRPLWILDEPTTALDKA 161
|
170 180 190
....*....|....*....|....*....|
gi 939619619 805 -VGK--HIFEEVIGPKGILarksrVLVTHG 831
Cdd:TIGR01189 162 gVALlaGLLRAHLARGGIV-----LLTTHQ 186
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
651-858 |
6.20e-09 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 57.76 E-value: 6.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 651 IENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG------------KLAYVPQQA 718
Cdd:cd03265 3 VENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGhdvvreprevrrRIGIVFQDL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 719 WIQNA-TVRDNI-LFGQTYDRKRynkviDACALRADiDILSAGDLTEIGEKGI-NLSGGQKQRISLARAVYSDADLYLLD 795
Cdd:cd03265 83 SVDDElTGWENLyIHARLYGVPG-----AERRERID-ELLDFVGLLEAADRLVkTYSGGMRRRLEIARSLVHRPEVLFLD 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 939619619 796 DPLSAVDAHVGKHIFEEVigpKGILARK--SRVLVTHGVTFLPQV-DSIYVIKMGEISESGTFDQL 858
Cdd:cd03265 157 EPTIGLDPQTRAHVWEYI---EKLKEEFgmTILLTTHYMEEAEQLcDRVAIIDHGRIIAEGTPEEL 219
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
664-872 |
6.58e-09 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 58.38 E-value: 6.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG-------------KLAYVPQQAWIQNATVRDNIL 730
Cdd:cd03288 37 LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGidisklplhtlrsRLSIILQDPILFSGSIRFNLD 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 731 FGQTYDRKRYNKVIDACALRADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVgKHIF 810
Cdd:cd03288 117 PECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT-ENIL 195
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 939619619 811 EEVIgpKGILARKSRVLVTHGVTFLPQVDSIYVIKMGEISESGTFDQLVKNK-GAFADFIIQH 872
Cdd:cd03288 196 QKVV--MTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEdGVFASLVRTD 256
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
641-830 |
7.33e-09 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 58.51 E-value: 7.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 641 HDSSKPHPMSIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAF-----L-------GEMEkLAGV---- 704
Cdd:COG1117 4 PASTLEPKIEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLnrmndLipgarveGEIL-LDGEdiyd 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 705 --VNTVG---KLAYVPQQAwiqN---ATVRDNILFGQtydrkRYNKVIDacalRADIDilsagdltEIGEK--------- 767
Cdd:COG1117 83 pdVDVVElrrRVGMVFQKP---NpfpKSIYDNVAYGL-----RLHGIKS----KSELD--------EIVEEslrkaalwd 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 939619619 768 ---------GINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIfEEVigpkgILARKSR---VLVTH 830
Cdd:COG1117 143 evkdrlkksALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKI-EEL-----ILELKKDytiVIVTH 211
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
664-861 |
7.47e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 58.91 E-value: 7.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEME------------------KLAGVVNTVGKLAYVPQQAWIQNaTV 725
Cdd:PRK13637 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKptsgkiiidgvditdkkvKLSDIRKKVGLVFQYPEYQLFEE-TI 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 726 RDNILFGQT----YDRKRYNKVIDAcalradIDILSAgDLTEIGEKG-INLSGGQKQRISLARAVYSDADLYLLDDPLSA 800
Cdd:PRK13637 102 EKDIAFGPInlglSEEEIENRVKRA------MNIVGL-DYEDYKDKSpFELSGGQKRRVAIAGVVAMEPKILILDEPTAG 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 939619619 801 VDAHVGKHIFEEVigpKGILARKSR--VLVTHGVTFLPQ-VDSIYVIKMGEISESGTFDQLVKN 861
Cdd:PRK13637 175 LDPKGRDEILNKI---KELHKEYNMtiILVSHSMEDVAKlADRIIVMNKGKCELQGTPREVFKE 235
|
|
| ABC_6TM_PCAT1_LagD_like |
cd18570 |
Six-transmembrane helical domain (6-TMD) of the peptidase-containing ATP-binding cassette ... |
1042-1279 |
8.68e-09 |
|
Six-transmembrane helical domain (6-TMD) of the peptidase-containing ATP-binding cassette transporters; This group includes the 6-TMD of the peptidase-containing ATP-binding cassette transporters (PCATs) such as Clostridium thermocellum PCAT1, a polypeptide processing and secretion transporter, and LagD, a bacteriocin ABC transporter from Lactococcus lactis. Bacterial exporters are typically formed by dimers of TMD-NBD half-transporters. Thus, most bacterial ABC transporters are formed of two identical TMDs and two identical NBDs. The transporters involved in protein secretion often contain additional peptidase domains essential for substrate processing. These peptidase domains belong to the cysteine protease superfamily, classified as family C39, bacteriocin-processing peptidase. LagD is highly similar to the peptidase-containing ATP-binding cassette transporters (PCATs). In Gram-positive bacteria, the PCATs are responsible for exporting quorum-sensing or antimicrobial peptides called bacteriocins.
Pssm-ID: 350014 [Multi-domain] Cd Length: 294 Bit Score: 58.61 E-value: 8.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1042 QVATNFFSSLAIslgcLKCSQLLHQTLL--YYN--LRWPMELFDTTPLGRIVNRFSkDIDTIDNVLPFNIRVVIGQAYMV 1117
Cdd:cd18570 55 QSLLSYIRSYLL----LKLSQKLDIRLIlgYFKhlLKLPLSFFETRKTGEIISRFN-DANKIREAISSTTISLFLDLLMV 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1118 LAT-IVVISLSTPIFLAVIVPI---AFLYYFAQRFYVATSRQLMRLESVsrspIYSHFSETVTGASTIRAYNVGDRFIEE 1193
Cdd:cd18570 130 IISgIILFFYNWKLFLITLLIIplyILIILLFNKPFKKKNREVMESNAE----LNSYLIESLKGIETIKSLNAEEQFLKK 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1194 SDAKVDK--NQVCKYpSVIANRWLAIR--LEMVGNLIILFASLFAVLGGQTNPG-LVGLsvsYALQV--TQTLNWLVRMS 1266
Cdd:cd18570 206 IEKKFSKllKKSFKL-GKLSNLQSSIKglISLIGSLLILWIGSYLVIKGQLSLGqLIAF---NALLGyfLGPIENLINLQ 281
|
250
....*....|...
gi 939619619 1267 SDIETNIVSVERI 1279
Cdd:cd18570 282 PKIQEAKVAADRL 294
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1324-1480 |
9.46e-09 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 59.69 E-value: 9.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1324 LVLRGVSFNIQGGEKVGIVGRTGAGKSSltlaLFRII----EAAGGRISI-DGVDIA--SMGLHMLRSRLTII------- 1389
Cdd:COG0488 329 TLLDDLSLRIDRGDRIGLIGPNGAGKST----LLKLLagelEPDSGTVKLgETVKIGyfDQHQEELDPDKTVLdelrdga 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1390 PQDPV----------LFSGslrinldpfeiktdDEIWKalelshlksFVKSlaaglnheiaeggenLSVGQRQLVCLARA 1459
Cdd:COG0488 405 PGGTEqevrgylgrfLFSG--------------DDAFK---------PVGV---------------LSGGEKARLALAKL 446
|
170 180
....*....|....*....|.
gi 939619619 1460 LLRKTKVLVLDEATAAVDLET 1480
Cdd:COG0488 447 LLSPPNVLLLDEPTNHLDIET 467
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
644-854 |
9.85e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 58.27 E-value: 9.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 644 SKPHPMSIENGEFSWGD--EITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEM--EKLAGVVNTVGKLAYVPQQAW 719
Cdd:PRK13640 1 MKDNIVEFKHVSFTYPDskKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLlpDDNPNSKITVDGITLTAKTVW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 720 ---------IQN-------ATVRDNILFG---QTYDRKRYNKVIDacalradiDILSAGDLTE-IGEKGINLSGGQKQRI 779
Cdd:PRK13640 81 direkvgivFQNpdnqfvgATVGDDVAFGlenRAVPRPEMIKIVR--------DVLADVGMLDyIDSEPANLSGGQKQRV 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 939619619 780 SLARAVYSDADLYLLDDPLSAVDAHVGKHIFEEVIGpkgiLARKSRVLV---THGVTFLPQVDSIYVIKMGEISESGT 854
Cdd:PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRK----LKKKNNLTVisiTHDIDEANMADQVLVLDDGKLLAQGS 226
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
1325-1484 |
1.14e-08 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 56.77 E-value: 1.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSL--TLALFRIIEAAGGRISIDGVDIASMGLHmLRSR--LTIIPQDPVLFSGsl 1400
Cdd:cd03217 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLakTIMGHPKYEVTEGEILFKGEDITDLPPE-ERARlgIFLAFQYPPEIPG-- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1401 rinldpfeIKTDDeiwkalelshlksFVKSLaaglnheiaegGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLET 1480
Cdd:cd03217 92 --------VKNAD-------------FLRYV-----------NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDA 139
|
....
gi 939619619 1481 DDLI 1484
Cdd:cd03217 140 LRLV 143
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1327-1477 |
1.49e-08 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 59.29 E-value: 1.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1327 RGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMG-LHMLRSRLTIIPQD----------PVL 1395
Cdd:PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALStAQRLARGLVYLPEDrqssglyldaPLA 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1396 FS-GSLRINLDPFEIKTddeiwkALELSHLKSFVKSLAAGLNHEIAEGGeNLSVGQRQLVCLARALLRKTKVLVLDEATA 1474
Cdd:PRK15439 360 WNvCALTHNRRGFWIKP------ARENAVLERYRRALNIKFNHAEQAAR-TLSGGNQQKVLIAKCLEASPQLLIVDEPTR 432
|
...
gi 939619619 1475 AVD 1477
Cdd:PRK15439 433 GVD 435
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
1325-1484 |
1.64e-08 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 56.09 E-value: 1.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDG---------------------VDIASMGLHMLR 1383
Cdd:NF040873 7 VLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAGgarvayvpqrsevpdslpltvRDLVAMGRWARR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1384 srltiipqdpvlfsGSLRinldpfEIKTDD--EIWKALELSHLKSFVK-SLAAglnheiaeggenLSVGQRQLVCLARAL 1460
Cdd:NF040873 87 --------------GLWR------RLTRDDraAVDDALERVGLADLAGrQLGE------------LSGGQRQRALLAQGL 134
|
170 180
....*....|....*....|....
gi 939619619 1461 LRKTKVLVLDEATAAVDLETDDLI 1484
Cdd:NF040873 135 AQEADLLLLDEPTTGLDAESRERI 158
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
1312-1480 |
1.65e-08 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 56.51 E-value: 1.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1312 QNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIasmglhmlrsrltIIPQ 1391
Cdd:COG2401 32 EAFGVELRVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVAGCVDVPDN-------------QFGR 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1392 DPVLfsgslrinLDPFEIKTDdeIWKALELSHlksfvkslAAGLN---------HEiaeggenLSVGQRQLVCLARALLR 1462
Cdd:COG2401 99 EASL--------IDAIGRKGD--FKDAVELLN--------AVGLSdavlwlrrfKE-------LSTGQKFRFRLALLLAE 153
|
170
....*....|....*...
gi 939619619 1463 KTKVLVLDEATAAVDLET 1480
Cdd:COG2401 154 RPKLLVIDEFCSHLDRQT 171
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
1325-1477 |
1.68e-08 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 56.02 E-value: 1.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSL--TLALFRIIEAAGGRISIDGVDIasmGLHMLRSRLTIIPQDPVLFSgslri 1402
Cdd:cd03213 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLlnALAGRRTGLGVSGEVLINGRPL---DKRSFRKIIGYVPQDDILHP----- 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 939619619 1403 NLDPFEiktddeiwkALELS-HLKSfvkslaaglnheiaeggenLSVGQRQLVCLARALLRKTKVLVLDEATAAVD 1477
Cdd:cd03213 96 TLTVRE---------TLMFAaKLRG-------------------LSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1292-1477 |
1.85e-08 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 58.88 E-value: 1.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1292 ELEQDKNKPKNWPQEGRVEFQNFQVRYREGLDlVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDG 1371
Cdd:COG3845 241 EVLLRVEKAPAEPGEVVLEVENLSVRDDRGVP-ALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDG 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1372 VDIASMG-LHMLRSRLTIIPQDP-----VLfSGSLRINLdpfeiktddeiwkALELSHLKSFVKSL-------------- 1431
Cdd:COG3845 320 EDITGLSpRERRRLGVAYIPEDRlgrglVP-DMSVAENL-------------ILGRYRRPPFSRGGfldrkairafaeel 385
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 939619619 1432 -------AAGLNHEIAeggeNLSVGQRQLVCLARALLRKTKVLVLDEATAAVD 1477
Cdd:COG3845 386 ieefdvrTPGPDTPAR----SLSGGNQQKVILARELSRDPKLLIAAQPTRGLD 434
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
649-802 |
1.96e-08 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 57.02 E-value: 1.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 649 MSIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVvqafLGEMEKL----AGVVNTVG-------------KL 711
Cdd:COG4604 2 IEIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTL----LSMISRLlppdSGEVLVDGldvattpsrelakRL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 712 AYVPQQawiqNA-----TVRDNILFGQ-TYDRKRYNK----VIDacalRAdIDILsagDLTEIGEKGIN-LSGGQKQRIS 780
Cdd:COG4604 78 AILRQE----NHinsrlTVRELVAFGRfPYSKGRLTAedreIID----EA-IAYL---DLEDLADRYLDeLSGGQRQRAF 145
|
170 180
....*....|....*....|..
gi 939619619 781 LARAVYSDADLYLLDDPLSAVD 802
Cdd:COG4604 146 IAMVLAQDTDYVLLDEPLNNLD 167
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1309-1486 |
2.28e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 57.05 E-value: 2.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLD-LVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLT 1387
Cdd:PRK13650 5 IEVKNLTFKYKEDQEkYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1388 IIPQDP------------VLFsGSLRINLDPFEIKtdDEIWKALELSHLKSFVKSLAAglnheiaeggeNLSVGQRQLVC 1455
Cdd:PRK13650 85 MVFQNPdnqfvgatveddVAF-GLENKGIPHEEMK--ERVNEALELVGMQDFKEREPA-----------RLSGGQKQRVA 150
|
170 180 190
....*....|....*....|....*....|..
gi 939619619 1456 LARALLRKTKVLVLDEATAAVDLETD-DLIQI 1486
Cdd:PRK13650 151 IAGAVAMRPKIIILDEATSMLDPEGRlELIKT 182
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1325-1484 |
2.50e-08 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 58.28 E-value: 2.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALF----------RII------EAAG--GRISIDGVDIASMGLHM----- 1381
Cdd:TIGR03269 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRgmdqyeptsgRIIyhvalcEKCGyvERPSKVGEPCPVCGGTLepeev 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1382 ------------LRSRLTIIPQDPVLFSGSLRI------NLDPFEIKTDDEIWKALELSHLksfvkslaAGLNHEIAEGG 1443
Cdd:TIGR03269 95 dfwnlsdklrrrIRKRIAIMLQRTFALYGDDTVldnvleALEEIGYEGKEAVGRAVDLIEM--------VQLSHRITHIA 166
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 939619619 1444 ENLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLI 1484
Cdd:TIGR03269 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLV 207
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
664-811 |
2.50e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 57.15 E-value: 2.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK-------------------LAYVPQQAWIQNAT 724
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYhitpetgnknlkklrkkvsLVFQFPEAQLFENT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 725 VRDNILFGQtydrKRYNKVIDACALRADIDILSAGDLTEIGEKG-INLSGGQKQRISLARAVYSDADLYLLDDPLSAVDA 803
Cdd:PRK13641 103 VLKDVEFGP----KNFGFSEDEAKEKALKWLKKVGLSEDLISKSpFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDP 178
|
....*...
gi 939619619 804 HVGKHIFE 811
Cdd:PRK13641 179 EGRKEMMQ 186
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1309-1484 |
2.55e-08 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 57.12 E-value: 2.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDlVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTI 1388
Cdd:PRK13652 4 IETRDLCYSYSGSKE-ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1389 IPQDP--VLFSGSLR--INLDPFEIKTDDEIWKalelSHLKSFVKSLaaGLNHEIAEGGENLSVGQRQLVCLARALLRKT 1464
Cdd:PRK13652 83 VFQNPddQIFSPTVEqdIAFGPINLGLDEETVA----HRVSSALHML--GLEELRDRVPHHLSGGEKKRVAIAGVIAMEP 156
|
170 180
....*....|....*....|.
gi 939619619 1465 KVLVLDEATAAVDLE-TDDLI 1484
Cdd:PRK13652 157 QVLVLDEPTAGLDPQgVKELI 177
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
659-849 |
2.76e-08 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 58.58 E-value: 2.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 659 GDEIT--LRNINIEVKKGSLVALVGTVGSGKSSVVQaFLGEMEK-LAGVVNTVGklayvpqqawiQN-ATVRDNIL---- 730
Cdd:PRK10535 17 GEEQVevLKGISLDIYAGEMVAIVGASGSGKSTLMN-ILGCLDKpTSGTYRVAG-----------QDvATLDADALaqlr 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 731 ---FGQTYDRKRYNKVIDAcALRADIDILSAGD------------LTEIG-EKGIN-----LSGGQKQRISLARAVYSDA 789
Cdd:PRK10535 85 rehFGFIFQRYHLLSHLTA-AQNVEVPAVYAGLerkqrllraqelLQRLGlEDRVEyqpsqLSGGQQQRVSIARALMNGG 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 939619619 790 DLYLLDDPLSAVDAHVGkhifEEVIGPKGILARKSR--VLVTHGVTFLPQVDSIYVIKMGEI 849
Cdd:PRK10535 164 QVILADEPTGALDSHSG----EEVMAILHQLRDRGHtvIIVTHDPQVAAQAERVIEIRDGEI 221
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
1317-1477 |
2.87e-08 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 56.94 E-value: 2.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1317 RYREglDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDG--VDIASMGLHMLRSRLTIIPQDP- 1393
Cdd:PRK13638 10 RYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGkpLDYSKRGLLALRQQVATVFQDPe 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1394 --VLFSG-------SLRiNLDPFEIKTDDEIWKALELSHLKSFVKSLAAGLNHeiaeggenlsvGQRQLVCLARALLRKT 1464
Cdd:PRK13638 88 qqIFYTDidsdiafSLR-NLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSH-----------GQKKRVAIAGALVLQA 155
|
170
....*....|...
gi 939619619 1465 KVLVLDEATAAVD 1477
Cdd:PRK13638 156 RYLLLDEPTAGLD 168
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
659-803 |
3.31e-08 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 55.58 E-value: 3.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 659 GDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK------------LAYVPQQAWIQNA-TV 725
Cdd:cd03231 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGpldfqrdsiargLLYLGHAPGIKTTlSV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 726 RDNILFgqtydrkrynkvidACALRADIDILSAgdLTEIGEKGI------NLSGGQKQRISLARAVYSDADLYLLDDPLS 799
Cdd:cd03231 91 LENLRF--------------WHADHSDEQVEEA--LARVGLNGFedrpvaQLSAGQQRRVALARLLLSGRPLWILDEPTT 154
|
....
gi 939619619 800 AVDA 803
Cdd:cd03231 155 ALDK 158
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1326-1478 |
3.52e-08 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 57.94 E-value: 3.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1326 LRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDG----------VDIASMGLHMLR----SRLTIIPQ 1391
Cdd:PRK10261 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKmllrrrsrqvIELSEQSAAQMRhvrgADMAMIFQ 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1392 DPVlfsgslrINLDPFeIKTDDEIWKALELSHLKSFVKSLAAGLNH----EIAEGGE-------NLSVGQRQLVCLARAL 1460
Cdd:PRK10261 112 EPM-------TSLNPV-FTVGEQIAESIRLHQGASREEAMVEAKRMldqvRIPEAQTilsryphQLSGGMRQRVMIAMAL 183
|
170
....*....|....*...
gi 939619619 1461 LRKTKVLVLDEATAAVDL 1478
Cdd:PRK10261 184 SCRPAVLIADEPTTALDV 201
|
|
| ABC_6TM_MsbA_like |
cd18552 |
Six-transmembrane helical domain of the bacterial ABC lipid flippase MsbA and similar proteins; ... |
1073-1279 |
3.62e-08 |
|
Six-transmembrane helical domain of the bacterial ABC lipid flippase MsbA and similar proteins; The bacterial lipid flippase MsbA is found in Gram-negative bacteria and transports lipid A and lipopolysaccharide (LPS) from the cytoplasmic leaflet to the periplasmic leaflet of the inner membrane. MsbA is also a polyspecific transporter capable of transporting a broad spectrum of drug molecules. Additionally, MsbA exhibits significant sequence similarity to mammalian multidrug resistance (MDR) proteins such as human MDR protein 1 (MDR1) and LmrA from Lactococcus lactis. This subgroup also contains a putative transporter Brevibacillus brevis TycD; the location of the tycD gene within the Tyc (tyrocidine) biosynthesis operon suggests that TycD may play a role in the secretion of the cyclic decapeptide antibiotic tyrocidine. This transmembrane (TM) subunit possesses the ATP-binding cassette (ABC) exporter fold, which is characterized by 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds, a various type of lipids and polypeptides. ABC transporters typically consist of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The sequences and structures of the TMDs are quite varied between the different type of transporters, suggesting significant structural diversity of the translocated substrates, while NBDs are conserved among all ABC transporters. The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane by alternating between inward- and outward-facing conformations. Moreover, some ABC genes are organized as half-transporters, which must form either homodimers or heterodimers to form a functional transporter. The ABC exporters play a role in multidrug resistance to antibiotics and anticancer agents, and mutations in these proteins have been shown to cause severe human diseases such as cystic fibrosis.
Pssm-ID: 349996 [Multi-domain] Cd Length: 292 Bit Score: 56.66 E-value: 3.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1073 LRWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIVV-ISLS---TPIFLaVIVPIAFL--YYFAQ 1146
Cdd:cd18552 83 LRLPLSFFDRNSSGDLISRITNDVNQVQNALTSALTVLVRDPLTVIGLLGVlFYLDwklTLIAL-VVLPLAALpiRRIGK 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1147 RFYVATSRQLMRLESVSrspiySHFSETVTGASTIRAYNVGDRFIEESDAKVDKNQvckypsVIANRWLAIR------LE 1220
Cdd:cd18552 162 RLRKISRRSQESMGDLT-----SVLQETLSGIRVVKAFGAEDYEIKRFRKANERLR------RLSMKIARARalssplME 230
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 939619619 1221 MVGNL---IILFASLFAVLGGQTNPG-LVGLsVSYALQVTQTLNWLVRMSSDIETNIVSVERI 1279
Cdd:cd18552 231 LLGAIaiaLVLWYGGYQVISGELTPGeFISF-ITALLLLYQPIKRLSNVNANLQRGLAAAERI 292
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
656-853 |
3.77e-08 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 56.55 E-value: 3.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 656 FSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKLAYVPQQAWI----QNATVRdnilf 731
Cdd:PRK13638 9 FRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLalrqQVATVF----- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 732 gQTYDRKRYNKVID---ACALR------ADI-----DILSAGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADLYLLDD 796
Cdd:PRK13638 84 -QDPEQQIFYTDIDsdiAFSLRnlgvpeAEItrrvdEALTLVDAQHFRHQPIQcLSHGQKKRVAIAGALVLQARYLLLDE 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 939619619 797 PLSAVDAhVGKHIFEEVIgpKGILARKSRVLV-THGVTFLPQV-DSIYVIKMGEISESG 853
Cdd:PRK13638 163 PTAGLDP-AGRTQMIAII--RRIVAQGNHVIIsSHDIDLIYEIsDAVYVLRQGQILTHG 218
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1309-1477 |
4.31e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 56.25 E-value: 4.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDL-VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLT 1387
Cdd:PRK13642 5 LEVENLVFKYEKESDVnQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1388 IIPQDP------VLFSGSLRINLD----PFE--IKTDDEIWKALELSHLKSfvkslaaglnHEIAEggenLSVGQRQLVC 1455
Cdd:PRK13642 85 MVFQNPdnqfvgATVEDDVAFGMEnqgiPREemIKRVDEALLAVNMLDFKT----------REPAR----LSGGQKQRVA 150
|
170 180
....*....|....*....|..
gi 939619619 1456 LARALLRKTKVLVLDEATAAVD 1477
Cdd:PRK13642 151 VAGIIALRPEIIILDESTSMLD 172
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
660-858 |
4.75e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 56.28 E-value: 4.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 660 DEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKLaYVPQQAW---------IQN-------A 723
Cdd:PRK13650 19 EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDL-LTEENVWdirhkigmvFQNpdnqfvgA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 724 TVRDNILFGQTydrkryNKVIDACALRADID-ILSAGDLTEIGEKG-INLSGGQKQRISLARAVYSDADLYLLDDPLSAV 801
Cdd:PRK13650 98 TVEDDVAFGLE------NKGIPHEEMKERVNeALELVGMQDFKEREpARLSGGQKQRVAIAGAVAMRPKIIILDEATSML 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 939619619 802 DahvgkhifeevigPKGIL-----ARKSR-------VLVTHGVTFLPQVDSIYVIKMGEISESGTFDQL 858
Cdd:PRK13650 172 D-------------PEGRLeliktIKGIRddyqmtvISITHDLDEVALSDRVLVMKNGQVESTSTPREL 227
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
664-860 |
5.53e-08 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 57.34 E-value: 5.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSS-------VVQAFLGEME--------------KLAGVvntvgklAYVPQQ-AWIQ 721
Cdd:COG1129 20 LDGVSLELRPGEVHALLGENGAGKSTlmkilsgVYQPDSGEILldgepvrfrsprdaQAAGI-------AIIHQElNLVP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 722 NATVRDNILFGQ------TYDRKRYNKviDACAL--RADIDIlsagDL-TEIGEkginLSGGQKQRISLARAVYSDADLY 792
Cdd:COG1129 93 NLSVAENIFLGReprrggLIDWRAMRR--RARELlaRLGLDI----DPdTPVGD----LSVAQQQLVEIARALSRDARVL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 793 LLDDPLSAVDAHVGKHIFEevigpkgILAR-KSR----VLVTHgvtFLPQV----DSIYVIKMGEISESG-----TFDQL 858
Cdd:COG1129 163 ILDEPTASLTEREVERLFR-------IIRRlKAQgvaiIYISH---RLDEVfeiaDRVTVLRDGRLVGTGpvaelTEDEL 232
|
..
gi 939619619 859 VK 860
Cdd:COG1129 233 VR 234
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
1309-1485 |
6.10e-08 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 55.56 E-value: 6.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYreGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFR---IIEA--AGGRISIDGVDIASMGLH--M 1381
Cdd:PRK14243 11 LRTENLNVYY--GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRlndLIPGfrVEGKVTFHGKNLYAPDVDpvE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1382 LRSRLTIIPQDPVLFSGSL--------RINldPFEIKTDDEIWKALELSHLKSFVKSlaaglnhEIAEGGENLSVGQRQL 1453
Cdd:PRK14243 89 VRRRIGMVFQKPNPFPKSIydniaygaRIN--GYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159
|
170 180 190
....*....|....*....|....*....|....*.
gi 939619619 1454 VCLARALLRKTKVLVLDEATAAVD----LETDDLIQ 1485
Cdd:PRK14243 160 LCIARAIAVQPEVILMDEPCSALDpistLRIEELMH 195
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
664-861 |
6.20e-08 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 56.21 E-value: 6.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLG-------------------------EMEKLAGvvntvGKLAYVPQQA 718
Cdd:COG0444 21 VDGVSFDVRRGETLGLVGESGSGKSTLARAILGllpppgitsgeilfdgedllklsekELRKIRG-----REIQMIFQDP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 719 wiQNA-----TVRDNI-----LFGQTYDRKRYNKVIDAcalradidilsagdLTEIG----EKGIN-----LSGGQKQRI 779
Cdd:COG0444 96 --MTSlnpvmTVGDQIaeplrIHGGLSKAEARERAIEL--------------LERVGlpdpERRLDrypheLSGGMRQRV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 780 SLARAVYSDADLYLLDDPLSAVDAHVGKHI---FEEvigpkgiLARKSR---VLVTH--GVtflpqV----DSIYVIKMG 847
Cdd:COG0444 160 MIARALALEPKLLIADEPTTALDVTIQAQIlnlLKD-------LQRELGlaiLFITHdlGV-----VaeiaDRVAVMYAG 227
|
250
....*....|....
gi 939619619 848 EISESGTFDQLVKN 861
Cdd:COG0444 228 RIVEEGPVEELFEN 241
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
650-853 |
6.41e-08 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 54.89 E-value: 6.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSWGDEITLRNINIEVKKGsLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG------------KLAYVPQQ 717
Cdd:cd03264 2 QLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGqdvlkqpqklrrRIGYLPQE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 718 -AWIQNATVRDNIlfgqtydrkRYN---KVIDACALRADID-ILSAGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADL 791
Cdd:cd03264 81 fGVYPNFTVREFL---------DYIawlKGIPSKEVKARVDeVLELVNLGDRAKKKIGsLSGGMRRRVGIAQALVGDPSI 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 792 YLLDDPLSAVDAhvgkhifEEVIGPKGILAR----KSRVLVTHGVTflpQVDSIY----VIKMGEISESG 853
Cdd:cd03264 152 LIVDEPTAGLDP-------EERIRFRNLLSElgedRIVILSTHIVE---DVESLCnqvaVLNKGKLVFEG 211
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
664-847 |
7.41e-08 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 53.87 E-value: 7.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAflgemeklagVVNTVGKLAYVPqqawiqnatvrdnilFGQTYDrkrYNKV 743
Cdd:cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNE----------GLYASGKARLIS---------------FLPKFS---RNKL 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 744 IDACALRADIDiLSAGDLTeIGEKGINLSGGQKQRISLARAVYSDAD--LYLLDDPLSAVDaHVGKHIFEEVIgpKGILA 821
Cdd:cd03238 63 IFIDQLQFLID-VGLGYLT-LGQKLSTLSGGELQRVKLASELFSEPPgtLFILDEPSTGLH-QQDINQLLEVI--KGLID 137
|
170 180
....*....|....*....|....*..
gi 939619619 822 RKSRV-LVTHGVTFLPQVDsiYVIKMG 847
Cdd:cd03238 138 LGNTViLIEHNLDVLSSAD--WIIDFG 162
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1326-1477 |
7.65e-08 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 55.17 E-value: 7.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1326 LRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIE-----AAGGRISIDGVDIASMGLHM--LRSRLTIIPQDPVLFSG 1398
Cdd:PRK14239 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDlnpevTITGSIVYNGHNIYSPRTDTvdLRKEIGMVFQQPNPFPM 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1399 S--------LRINLDPFEIKTDDEIWKALELSHLKSFVKSLAaglnHEIAEGgenLSVGQRQLVCLARALLRKTKVLVLD 1470
Cdd:PRK14239 101 SiyenvvygLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRL----HDSALG---LSGGQQQRVCIARVLATSPKIILLD 173
|
....*..
gi 939619619 1471 EATAAVD 1477
Cdd:PRK14239 174 EPTSALD 180
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
664-801 |
7.69e-08 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 56.72 E-value: 7.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG--------KLAY------VPQQ-AWIQNATVRDN 728
Cdd:PRK09700 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNinynkldhKLAAqlgigiIYQElSVIDELTVLEN 100
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 939619619 729 ILFGQTYDRKRYN-KVIDACALR--ADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAV 801
Cdd:PRK09700 101 LYIGRHLTKKVCGvNIIDWREMRvrAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
1318-1480 |
8.00e-08 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 54.68 E-value: 8.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1318 YREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHmLRSRLTIIPQDPVLfs 1397
Cdd:cd03265 8 KKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPRE-VRRRIGIVFQDLSV-- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1398 gslrinldpfeiktDDEI--WKALEL---------SHLKSFVKSLAAGLnhEIAEGGENL----SVGQRQLVCLARALLR 1462
Cdd:cd03265 85 --------------DDELtgWENLYIharlygvpgAERRERIDELLDFV--GLLEAADRLvktySGGMRRRLEIARSLVH 148
|
170
....*....|....*...
gi 939619619 1463 KTKVLVLDEATAAVDLET 1480
Cdd:cd03265 149 RPEVLFLDEPTIGLDPQT 166
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
1309-1477 |
8.01e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 55.58 E-value: 8.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRII---EAAGGRISIDGVDIASMGLHMLRSR 1385
Cdd:PRK13640 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLlpdDNPNSKITVDGITLTAKTVWDIREK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1386 LTIIPQDP-VLFSGSlrinldpfeiKTDDEIWKALE-----LSHLKSFVKSLAA--GLNHEIAEGGENLSVGQRQLVCLA 1457
Cdd:PRK13640 86 VGIVFQNPdNQFVGA----------TVGDDVAFGLEnravpRPEMIKIVRDVLAdvGMLDYIDSEPANLSGGQKQRVAIA 155
|
170 180
....*....|....*....|
gi 939619619 1458 RALLRKTKVLVLDEATAAVD 1477
Cdd:PRK13640 156 GILAVEPKIIILDESTSMLD 175
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
657-860 |
8.14e-08 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 56.27 E-value: 8.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 657 SWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGeMEKlagvvNTVGKLAY----VPQQAwIQNatvRDNILFG 732
Cdd:PRK11432 15 RFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG-LEK-----PTEGQIFIdgedVTHRS-IQQ---RDICMVF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 733 QTY----------------------DRKRYNKVIDACALRadidilsagDLTEIGEKGIN-LSGGQKQRISLARAVYSDA 789
Cdd:PRK11432 85 QSYalfphmslgenvgyglkmlgvpKEERKQRVKEALELV---------DLAGFEDRYVDqISGGQQQRVALARALILKP 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 939619619 790 DLYLLDDPLSAVDAHVGKHIFE---EVIGPKGIlarkSRVLVTHGVTFLPQV-DSIYVIKMGEISESGTFDQLVK 860
Cdd:PRK11432 156 KVLLFDEPLSNLDANLRRSMREkirELQQQFNI----TSLYVTHDQSEAFAVsDTVIVMNKGKIMQIGSPQELYR 226
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1325-1477 |
1.04e-07 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 56.11 E-value: 1.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLtlalFRII----EAAGGRISIDGVDIA--------------SMGL--HMlrs 1384
Cdd:PRK09452 29 VISNLDLTINNGEFLTLLGPSGCGKTTV----LRLIagfeTPDSGRIMLDGQDIThvpaenrhvntvfqSYALfpHM--- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1385 rlTIIpqDPVLFsgSLRINLDPF-EIKTddEIWKALELSHLKSFVkslaaglNHEIAeggeNLSVGQRQLVCLARALLRK 1463
Cdd:PRK09452 102 --TVF--ENVAF--GLRMQKTPAaEITP--RVMEALRMVQLEEFA-------QRKPH----QLSGGQQQRVAIARAVVNK 162
|
170
....*....|....
gi 939619619 1464 TKVLVLDEATAAVD 1477
Cdd:PRK09452 163 PKVLLLDESLSALD 176
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1326-1486 |
1.06e-07 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 56.33 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1326 LRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDI--------ASMGLHMLRSRLTIIPQDPV--- 1394
Cdd:PRK09700 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYnkldhklaAQLGIGIIYQELSVIDELTVlen 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1395 LFSGSLRINlDPFEIKTDDeiWKALElshLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATA 1474
Cdd:PRK09700 101 LYIGRHLTK-KVCGVNIID--WREMR---VRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTS 174
|
170
....*....|...
gi 939619619 1475 AV-DLETDDLIQI 1486
Cdd:PRK09700 175 SLtNKEVDYLFLI 187
|
|
| ABC_6TM_Tm287_like |
cd18548 |
Six-transmembrane helical domain Tm287 of a heterodimeric ABC transporter Tm287/288 from ... |
333-625 |
1.40e-07 |
|
Six-transmembrane helical domain Tm287 of a heterodimeric ABC transporter Tm287/288 from Thermotoga maritima and similar proteins; This group represents the six-transmembrane helical domain (Tm287) of a heterodimeric ABC transporter Tm287/288 from Thermotoga maritima and similar proteins. This TMD possesses the ATP-binding cassette (ABC) exporter fold, which is characterized by 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds, a various type of lipids and polypeptides. ABC transporters typically consist of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The sequences and structures of the TMDs are quite varied between the different type of transporters, suggesting significant structural diversity of the translocated substrates, while NBDs are conserved among all ABC transporters. The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane by alternating between inward- and outward-facing conformations. Moreover, some ABC genes are organized as half-transporters, which must form either homodimers or heterodimers to form a functional transporter. The ABC exporters play a role in multidrug resistance to antibiotics and anticancer agents, and mutations in these proteins have been shown to cause severe human diseases such as cystic fibrosis.
Pssm-ID: 349992 [Multi-domain] Cd Length: 292 Bit Score: 54.71 E-value: 1.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 333 FLFGALMKLFTDTLTFAQPQVLSLII-SFVEAQDAEPEWKgilYAVLLFVLAAAQTF--ILGQYFhrMFIVGLRIRTALI 409
Cdd:cd18548 1 AILAPLFKLLEVLLELLLPTLMADIIdEGIANGDLSYILR---TGLLMLLLALLGLIagILAGYF--AAKASQGFGRDLR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 410 NAIYRKALRISNSTKKESTVGEIVNLMAVDA---QRFMELTtyLNMIWSAPLQIGLALYFLWQ---QLGPSVLAGLAVMI 483
Cdd:cd18548 76 KDLFEKIQSFSFAEIDKFGTSSLITRLTNDVtqvQNFVMML--LRMLVRAPIMLIGAIIMAFRinpKLALILLVAIPILA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 484 ILIpvnGVIASR-IKTYQIRQMKYkDERVKLMNEVLSGIKVLKLYAWEP----SFEKQVLDIRDKEIATLRSTAYLNAGT 558
Cdd:cd18548 154 LVV---FLIMKKaIPLFKKVQKKL-DRLNRVVRENLTGIRVIRAFNREDyeeeRFDKANDDLTDTSLKAGRLMALLNPLM 229
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 939619619 559 SFLWSCApfLVSLVTFATYvLIDENNVLdaTKTFVSLS--LFNILrFPLTMLPMLITNLVQTQVSVNRI 625
Cdd:cd18548 230 MLIMNLA--IVAILWFGGH-LINAGSLQ--VGDLVAFInyLMQIL-MSLMMLSMVFVMLPRASASAKRI 292
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1326-1486 |
1.46e-07 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 56.09 E-value: 1.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1326 LRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAA--GGRISIDGVDIAS--------MGLHMLRSRLTIIPQDPVL 1395
Cdd:PRK13549 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGtyEGEIIFEGEELQAsnirdterAGIAIIHQELALVKELSVL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1396 ---FSGSlriNLDPFEIKTDDEIwkalelsHLKSfvKSLAAGLNHEI--AEGGENLSVGQRQLVCLARALLRKTKVLVLD 1470
Cdd:PRK13549 101 eniFLGN---EITPGGIMDYDAM-------YLRA--QKLLAQLKLDInpATPVGNLGLGQQQLVEIAKALNKQARLLILD 168
|
170
....*....|....*..
gi 939619619 1471 EATAAV-DLETDDLIQI 1486
Cdd:PRK13549 169 EPTASLtESETAVLLDI 185
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
1316-1484 |
1.90e-07 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 54.12 E-value: 1.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1316 VRYREGlDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIAsmglHMLRSRL-TIIPQ-DP 1393
Cdd:PRK15056 14 VTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR----QALQKNLvAYVPQsEE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1394 VLFSgslrinldpFEIKTDDEI---------WKALELSHLKSFVKSLAAG---LNHEIAEGGEnLSVGQRQLVCLARALL 1461
Cdd:PRK15056 89 VDWS---------FPVLVEDVVmmgryghmgWLRRAKKRDRQIVTAALARvdmVEFRHRQIGE-LSGGQKKRVFLARAIA 158
|
170 180
....*....|....*....|...
gi 939619619 1462 RKTKVLVLDEATAAVDLETDDLI 1484
Cdd:PRK15056 159 QQGQVILLDEPFTGVDVKTEARI 181
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
649-802 |
2.17e-07 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 53.03 E-value: 2.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 649 MSIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK------------LAYVPQ 716
Cdd:PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQsikkdlctyqkqLCFVGH 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 717 QAWIQ-NATVRDNILFGQTYDRKryNKVIDACalradIDILSAGDLTEIgEKGInLSGGQKQRISLARAVYSDADLYLLD 795
Cdd:PRK13540 82 RSGINpYLTLRENCLYDIHFSPG--AVGITEL-----CRLFSLEHLIDY-PCGL-LSSGQKRQVALLRLWMSKAKLWLLD 152
|
....*..
gi 939619619 796 DPLSAVD 802
Cdd:PRK13540 153 EPLVALD 159
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
664-851 |
2.60e-07 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 53.21 E-value: 2.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSV--------------VQAF------LGEmEKLAGVVNtvGKLAYVpQQAW--IQ 721
Cdd:COG4181 28 LKGISLEVEAGESVAIVGASGSGKSTLlgllagldrptsgtVRLAgqdlfaLDE-DARARLRA--RHVGFV-FQSFqlLP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 722 NATVRDNI-----LFGQTYDRKRYNKVIDACALRADIDILSAGdlteigekginLSGGQKQRISLARAVYSDADLYLLDD 796
Cdd:COG4181 104 TLTALENVmlpleLAGRRDARARARALLERVGLGHRLDHYPAQ-----------LSGGEQQRVALARAFATEPAILFADE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 939619619 797 PLSAVDAHVGKHI----FEevigpkgiLARKSR---VLVTHGVTFLPQVDSIYVIKMGEISE 851
Cdd:COG4181 173 PTGNLDAATGEQIidllFE--------LNRERGttlVLVTHDPALAARCDRVLRLRAGRLVE 226
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
664-804 |
2.68e-07 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 52.55 E-value: 2.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLG--EMEKLAGVVNTVGK----------LAYVPQQ-AWIQNATVRDNIL 730
Cdd:cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGrrTGLGVSGEVLINGRpldkrsfrkiIGYVPQDdILHPTLTVRETLM 104
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 939619619 731 FgqtydrkrynkvidACALRadidilsagdlteigekgiNLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAH 804
Cdd:cd03213 105 F--------------AAKLR-------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSS 145
|
|
| ABC_6TM_YknU_like |
cd18542 |
Six-transmembrane helical domain (6-TMD) of the uncharacterized ABC transporter YknU and ... |
333-625 |
2.87e-07 |
|
Six-transmembrane helical domain (6-TMD) of the uncharacterized ABC transporter YknU and similar proteins; This group represents the six-transmembrane helical domain (6-TMD) of the uncharacterized ABC transporter YknU and similar proteins. This TMD possesses the ATP-binding cassette (ABC) exporter fold, which is characterized by 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds and a various type of lipids. ABC transporters typically consist of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The sequences and structures of the TMDs are quite varied between the different type of transporters, suggesting significant structural diversity of the translocated substrates, while NBDs are conserved among all ABC transporters. The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane. However, some ABC genes are organized as half-transporters, which must form either homodimers or heterodimers to form a functional transporter. The ABC exporters play a role in multidrug resistance to antibiotics and anticancer agents, and mutations in these proteins have been shown to cause severe human diseases such as cystic fibrosis.
Pssm-ID: 349986 [Multi-domain] Cd Length: 292 Bit Score: 53.97 E-value: 2.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 333 FLFGALMKLFTDTLTFAQPQVLSLII-SFVEAQDAEPEWkgiLYAVLLFVLAAAQTFIlgQYFHRMFI------VGLRIR 405
Cdd:cd18542 1 YLLAILALLLATALNLLIPLLIRRIIdSVIGGGLRELLW---LLALLILGVALLRGVF--RYLQGYLAekasqkVAYDLR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 406 taliNAIYRKALRISNSTKKESTVGEIVNLMAVDA---QRFmeLTTYLNMIWSAPLQIGLALYFLWqqlgpSVLAGLA-V 481
Cdd:cd18542 76 ----NDLYDHLQRLSFSFHDKARTGDLMSRCTSDVdtiRRF--LAFGLVELVRAVLLFIGALIIMF-----SINWKLTlI 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 482 MIILIPVNGVIASRIKTyQIRQMKYK-DERVKLMN----EVLSGIKVLKLYAWEPS----FEKQVLDIRDKEIATLRSTA 552
Cdd:cd18542 145 SLAIIPFIALFSYVFFK-KVRPAFEEiREQEGELNtvlqENLTGVRVVKAFAREDYeiekFDKENEEYRDLNIKLAKLLA 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 553 YLNAGTSFLWSCAPFLV----------------SLVTFATYVlidennvldatktfvslslfNILRFPLTMLPMLITNLV 616
Cdd:cd18542 224 KYWPLMDFLSGLQIVLVlwvggylvingeitlgELVAFISYL--------------------WMLIWPVRQLGRLINDMS 283
|
....*....
gi 939619619 617 QTQVSVNRI 625
Cdd:cd18542 284 RASASAERI 292
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
647-853 |
2.91e-07 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 53.59 E-value: 2.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 647 HPMSIENGEFSWGDEI-TLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKLAYVPQQAWIQN--- 722
Cdd:PRK13647 3 NIIEVEDLHFRYKDGTkALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSkvg 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 723 ------------ATVRDNILFG---QTYDRKRYNKVIDAcALRADidilsagDLTEIGEKG-INLSGGQKQRISLARAVY 786
Cdd:PRK13647 83 lvfqdpddqvfsSTVWDDVAFGpvnMGLDKDEVERRVEE-ALKAV-------RMWDFRDKPpYHLSYGQKKRVAIAGVLA 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 939619619 787 SDADLYLLDDPLSAVDAHVGKHIFEevigpkgILAR-----KSRVLVTHGVTFLPQ-VDSIYVIKMGEISESG 853
Cdd:PRK13647 155 MDPDVIVLDEPMAYLDPRGQETLME-------ILDRlhnqgKTVIVATHDVDLAAEwADQVIVLKEGRVLAEG 220
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
664-804 |
2.91e-07 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 53.68 E-value: 2.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEK--LAGVVNTVGKL-------------------AYVPQQAwiQN 722
Cdd:PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGggAPRGARVTGDVtlngeplaaidaprlarlrAVLPQAA--QP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 723 A---TVRDNILFGQTYDRKR------YNKVIDACAL-RADIDILSAGDLTeigekgiNLSGGQKQRISLARAV------- 785
Cdd:PRK13547 95 AfafSAREIVLLGRYPHARRagalthRDGEIAWQALaLAGATALVGRDVT-------TLSGGELARVQFARVLaqlwpph 167
|
170 180
....*....|....*....|..
gi 939619619 786 --YSDADLYLLDDPLSAVD-AH 804
Cdd:PRK13547 168 daAQPPRYLLLDEPTAALDlAH 189
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
650-804 |
3.12e-07 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 52.50 E-value: 3.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK------------LAYVPQQ 717
Cdd:PRK13538 3 EARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEpirrqrdeyhqdLLYLGHQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 718 AWIQNA-TVRDNILFgqtydrkrynkvidACALRADID---ILSAgdLTEIGEKGI------NLSGGQKQRISLARAVYS 787
Cdd:PRK13538 83 PGIKTElTALENLRF--------------YQRLHGPGDdeaLWEA--LAQVGLAGFedvpvrQLSAGQQRRVALARLWLT 146
|
170
....*....|....*..
gi 939619619 788 DADLYLLDDPLSAVDAH 804
Cdd:PRK13538 147 RAPLWILDEPFTAIDKQ 163
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
1309-1486 |
3.60e-07 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 53.68 E-value: 3.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDLVLRG---VSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDI----ASMGLHM 1381
Cdd:PRK13641 3 IKFENVDYIYSPGTPMEKKGldnISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHItpetGNKNLKK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1382 LRSRLTIIPQDP--VLFSGSL--RINLDPFEIKTDDEIWKALELSHLKSfvkslaAGLNHEIAEGGE-NLSVGQRQLVCL 1456
Cdd:PRK13641 83 LRKKVSLVFQFPeaQLFENTVlkDVEFGPKNFGFSEDEAKEKALKWLKK------VGLSEDLISKSPfELSGGQMRRVAI 156
|
170 180 190
....*....|....*....|....*....|.
gi 939619619 1457 ARALLRKTKVLVLDEATAAVDLET-DDLIQI 1486
Cdd:PRK13641 157 AGVMAYEPEILCLDEPAAGLDPEGrKEMMQL 187
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1326-1486 |
3.81e-07 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 54.53 E-value: 3.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1326 LRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIA-SMGLHMLRSRLTIIPQDpvlfsgslrINL 1404
Cdd:PRK11288 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRfASTTAALAAGVAIIYQE---------LHL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1405 DPfEIKTDDEIWkaleLSHLKS---FV--KSLAAGLNHEIAEGGEN---------LSVGQRQLVCLARALLRKTKVLVLD 1470
Cdd:PRK11288 91 VP-EMTVAENLY----LGQLPHkggIVnrRLLNYEAREQLEHLGVDidpdtplkyLSIGQRQMVEIAKALARNARVIAFD 165
|
170
....*....|....*..
gi 939619619 1471 EATAAVDL-ETDDLIQI 1486
Cdd:PRK11288 166 EPTSSLSArEIEQLFRV 182
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1326-1489 |
4.01e-07 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 53.55 E-value: 4.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1326 LRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDI--------ASMGLHM-LRSRL--TIIPQDpv 1394
Cdd:COG4586 38 VDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGYVPfkrrkefaRRIGVVFgQRSQLwwDLPAID-- 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1395 lfsgSLRINLDPFEIktDDEIWKA--------LELSH-LKSFVKslaaglnheiaeggeNLSVGQRQLVCLARALLRKTK 1465
Cdd:COG4586 116 ----SFRLLKAIYRI--PDAEYKKrldelvelLDLGElLDTPVR---------------QLSLGQRMRCELAAALLHRPK 174
|
170 180
....*....|....*....|....
gi 939619619 1466 VLVLDEATAAVDLETDDliQIRHF 1489
Cdd:COG4586 175 ILFLDEPTIGLDVVSKE--AIREF 196
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1309-1471 |
4.04e-07 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 52.96 E-value: 4.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYreGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIAS-MGLHMLRSRLT 1387
Cdd:PRK11614 6 LSFDKVSAHY--GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDwQTAKIMREAVA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1388 IIPQDPVLFSG-SLRINLDPFEIKTDDEIWKalelsHLKSFVKSLAAGLNHEIAEGGENLSVGQRQLVCLARALLRKTKV 1466
Cdd:PRK11614 84 IVPEGRRVFSRmTVEENLAMGGFFAERDQFQ-----ERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL 158
|
....*
gi 939619619 1467 LVLDE 1471
Cdd:PRK11614 159 LLLDE 163
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
1324-1477 |
4.25e-07 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 52.66 E-value: 4.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1324 LVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAG---GRISIDGVDiasMGLHMLRSRLTIIPQDPVLFSG-- 1398
Cdd:cd03234 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGttsGQILFNGQP---RKPDQFQKCVAYVRQDDILLPGlt 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1399 -----------SLRINLDPFEIKTDDEIWKALELSHLKsfvkslaagLNHEIAEGgenLSVGQRQLVCLARALLRKTKVL 1467
Cdd:cd03234 98 vretltytailRLPRKSSDAIRKKRVEDVLLRDLALTR---------IGGNLVKG---ISGGERRRVSIAVQLLWDPKVL 165
|
170
....*....|
gi 939619619 1468 VLDEATAAVD 1477
Cdd:cd03234 166 ILDEPTSGLD 175
|
|
| ABC_6TM_TAP_ABCB8_10_like |
cd18557 |
Six-transmembrane helical domain (6-TMD) of the ABC transporter TAP, ABCB8 and ABCB10; This ... |
336-569 |
4.52e-07 |
|
Six-transmembrane helical domain (6-TMD) of the ABC transporter TAP, ABCB8 and ABCB10; This group includes ABC transporter associated with antigen processing (TAP), which is essential to cellular immunity against viral infection, as well as ABCB8 and ABCB10, which are found in the inner membrane of mitochondria, with the nucleotide-binding domains (NBDs) inside the mitochondrial matrix. TAP is involved in the transport of antigens from the cytoplasm to the endoplasmic reticulum(ER) for association with MHC class I molecules, which play a central role in the adaptive immune response to viruses and cancers by presenting antigenic peptides to CD8+ cytotoxic T lymphocytes (CTLs). Mammalian ABCB10 is essential for erythropoiesis and for protection of mitochondria against oxidative stress, while ABCB8 is essential for normal cardiac function, maintenance of mitochondrial iron homeostasis and maturation of cytosolic Fe/S proteins.
Pssm-ID: 350001 [Multi-domain] Cd Length: 289 Bit Score: 53.33 E-value: 4.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 336 GALMKLFTDTLTFAQPQVLSLII-SFVEAQDAEPEWKGILYAVLLFVLAAAQTFILGQYFHrmfIVGLRIRTALINAIYR 414
Cdd:cd18557 1 GLLFLLISSAAQLLLPYLIGRLIdTIIKGGDLDVLNELALILLAIYLLQSVFTFVRYYLFN---IAGERIVARLRRDLFS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 415 KALRISNSTKKESTVGEIVNLMAVDAQRFME-LTTYLNMIWSAPLQIGLALYFLW---QQLGPsvlaglaVMIILIPVNg 490
Cdd:cd18557 78 SLLRQEIAFFDKHKTGELTSRLSSDTSVLQSaVTDNLSQLLRNILQVIGGLIILFilsWKLTL-------VLLLVIPLL- 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 491 VIASRIKTYQIRQM--KYKDERVKLM---NEVLSGIKVLKLYAWEP----SFEKQVLDIRDKEIATLRSTAYLNAGTSFL 561
Cdd:cd18557 150 LIASKIYGRYIRKLskEVQDALAKAGqvaEESLSNIRTVRSFSAEEkeirRYSEALDRSYRLARKKALANALFQGITSLL 229
|
....*...
gi 939619619 562 WSCAPFLV 569
Cdd:cd18557 230 IYLSLLLV 237
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
660-858 |
4.64e-07 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 52.74 E-value: 4.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 660 DEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKLAYVPQQAWIQNA---------------- 723
Cdd:PRK14246 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAiklrkevgmvfqqpnp 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 724 ----TVRDNILF----GQTYDRKRYNKVIDACalradidILSAGDLTEIGEK----GINLSGGQKQRISLARAVYSDADL 791
Cdd:PRK14246 102 fphlSIYDNIAYplksHGIKEKREIKKIVEEC-------LRKVGLWKEVYDRlnspASQLSGGQQQRLTIARALALKPKV 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 939619619 792 YLLDDPLSAVDAhVGKHIFEEVIGPkgILARKSRVLVTHGVTFLPQV-DSIYVIKMGEISESGTFDQL 858
Cdd:PRK14246 175 LLMDEPTSMIDI-VNSQAIEKLITE--LKNEIAIVIVSHNPQQVARVaDYVAFLYNGELVEWGSSNEI 239
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
660-802 |
5.06e-07 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 51.00 E-value: 5.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 660 DEITLRNINIEVKKGSLVALVGTVGSGKSSVVQA-------FLGEMEKLAGvvntvGKLAYVPQQAWIQNATVRDNILFg 732
Cdd:cd03223 13 GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRAlaglwpwGSGRIGMPEG-----EDLLFLPQRPYLPLGTLREQLIY- 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 733 qTYDRKrynkvidacalradidilsagdlteigekginLSGGQKQRISLARAVYSDADLYLLDDPLSAVD 802
Cdd:cd03223 87 -PWDDV--------------------------------LSGGEQQRLAFARLLLHKPKFVFLDEATSALD 123
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
1325-1477 |
7.17e-07 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 53.96 E-value: 7.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMG---LHMLR--------SRLTIIP--- 1390
Cdd:PRK10535 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDadaLAQLRrehfgfifQRYHLLShlt 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1391 -----QDPVLFSGSLRinldpfeiKTDDEIWKALeLSHLksfvkslaaGLNHEIAEGGENLSVGQRQLVCLARALLRKTK 1465
Cdd:PRK10535 103 aaqnvEVPAVYAGLER--------KQRLLRAQEL-LQRL---------GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQ 164
|
170
....*....|..
gi 939619619 1466 VLVLDEATAAVD 1477
Cdd:PRK10535 165 VILADEPTGALD 176
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
664-854 |
7.80e-07 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 52.77 E-value: 7.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQ--AFLgemEK-LAGVVnTVG-----------------KLAYVPQQ-AWIQN 722
Cdd:COG1135 21 LDDVSLTIEKGEIFGIIGYSGAGKSTLIRciNLL---ERpTSGSV-LVDgvdltalserelraarrKIGMIFQHfNLLSS 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 723 ATVRDNILF-----GqtYDRKRynkvIDAcalRADiDILsagDLTEIGEKG----INLSGGQKQRISLARAVYSDADLYL 793
Cdd:COG1135 97 RTVAENVALpleiaG--VPKAE----IRK---RVA-ELL---ELVGLSDKAdaypSQLSGGQKQRVGIARALANNPKVLL 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 939619619 794 LDDPLSAVDahvgkhifeevigP---KGILA--RKSR-------VLVTH--GVtflpqV----DSIYVIKMGEISESGT 854
Cdd:COG1135 164 CDEATSALD-------------PettRSILDllKDINrelgltiVLITHemDV-----VrricDRVAVLENGRIVEQGP 224
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
659-863 |
8.46e-07 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 51.37 E-value: 8.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 659 GDEItLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAgvvnTVGKLAYVPQqawiqnatvrdNILFGQTYDRK 738
Cdd:cd03217 12 GKEI-LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV----TEGEILFKGE-----------DITDLPPEERA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 739 RyNKVIDACALRADIDILSAGD-LTEIGEkgiNLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEEVigpK 817
Cdd:cd03217 76 R-LGIFLAFQYPPEIPGVKNADfLRYVNE---GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVI---N 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 939619619 818 GILARKSRVL-VTHGVTFLPQV--DSIYVIKMGEISESGTFD--QLVKNKG 863
Cdd:cd03217 149 KLREEGKSVLiITHYQRLLDYIkpDRVHVLYDGRIVKSGDKElaLEIEKKG 199
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1312-1477 |
8.70e-07 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 53.56 E-value: 8.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1312 QNFQVRYREG--LDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAA-----GGRISIDGVDIASMGLHMLR- 1383
Cdd:PRK15134 9 ENLSVAFRQQqtVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPpvvypSGDIRFHGESLLHASEQTLRg 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1384 ---SRLTIIPQDPVlfsgslrINLDPFEiktddEIWKALelshlkSFVKSLAAGLNHEIAEG------------------ 1442
Cdd:PRK15134 89 vrgNKIAMIFQEPM-------VSLNPLH-----TLEKQL------YEVLSLHRGMRREAARGeilncldrvgirqaakrl 150
|
170 180 190
....*....|....*....|....*....|....*...
gi 939619619 1443 ---GENLSVGQRQLVCLARALLRKTKVLVLDEATAAVD 1477
Cdd:PRK15134 151 tdyPHQLSGGERQRVMIAMALLTRPELLIADEPTTALD 188
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
1325-1478 |
8.87e-07 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 52.14 E-value: 8.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAG--------GRISIDGVDIASMGLHMLRSRLTIIPQ--DPV 1394
Cdd:PRK13547 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGaprgarvtGDVTLNGEPLAAIDAPRLARLRAVLPQaaQPA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1395 L-FSGSLRINLDPF---------EIKTDDEIWKALELshlksfvkslaAGLNHEIAEGGENLSVGQRQLVCLARAL---- 1460
Cdd:PRK13547 96 FaFSAREIVLLGRYpharragalTHRDGEIAWQALAL-----------AGATALVGRDVTTLSGGELARVQFARVLaqlw 164
|
170 180
....*....|....*....|...
gi 939619619 1461 -----LRKTKVLVLDEATAAVDL 1478
Cdd:PRK13547 165 pphdaAQPPRYLLLDEPTAALDL 187
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
666-862 |
1.02e-06 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 51.82 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 666 NINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVV--------------NTVGKLAYVPQQAWI-QNATVRDNiL 730
Cdd:PRK10895 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIiiddedisllplhaRARRGIGYLPQEASIfRRLSVYDN-L 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 731 FGQTYDRKRYNKviDACALRADiDILSAGDLTEIGEK-GINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAhvgkhi 809
Cdd:PRK10895 100 MAVLQIRDDLSA--EQREDRAN-ELMEEFHIEHLRDSmGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDP------ 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 939619619 810 fEEVIGPKGILA--RKS--RVLVT-HGV-TFLPQVDSIYVIKMGEISESGTFDQLVKNK 862
Cdd:PRK10895 171 -ISVIDIKRIIEhlRDSglGVLITdHNVrETLAVCERAYIVSQGHLIAHGTPTEILQDE 228
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
670-857 |
1.06e-06 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 50.65 E-value: 1.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 670 EVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG-KLAYVPQQawiqnatvrdnilfgqtydrkrynkvidaca 748
Cdd:cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGiTPVYKPQY------------------------------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 749 lradidilsagdlteigekgINLSGGQKQRISLARAVYSDADLYLLDDPLSAVD-------AHVGKHIFEEvigpkgilA 821
Cdd:cd03222 70 --------------------IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDieqrlnaARAIRRLSEE--------G 121
|
170 180 190
....*....|....*....|....*....|....*.
gi 939619619 822 RKSRVLVTHGVTFLPQVDSIYVIKMGEISESGTFDQ 857
Cdd:cd03222 122 KKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQ 157
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
649-859 |
1.16e-06 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 52.88 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 649 MSIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLG--EMEKLAGVVntVGKLAYVPQQAWIQ----- 721
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGmdQYEPTSGRI--IYHVALCEKCGYVErpskv 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 722 ---------------------------NATVRDNILFGQTY----DRKRYNKVIDA---CALRADIDILSAGDLTE---- 763
Cdd:TIGR03269 79 gepcpvcggtlepeevdfwnlsdklrrRIRKRIAIMLQRTFalygDDTVLDNVLEAleeIGYEGKEAVGRAVDLIEmvql 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 764 ---IGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEEVIgpKGILARK-SRVLVTHgvtfLPQV- 838
Cdd:TIGR03269 159 shrITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALE--EAVKASGiSMVLTSH----WPEVi 232
|
250 260
....*....|....*....|....*
gi 939619619 839 ----DSIYVIKMGEISESGTFDQLV 859
Cdd:TIGR03269 233 edlsDKAIWLENGEIKEEGTPDEVV 257
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
664-861 |
1.31e-06 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 51.93 E-value: 1.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQ---------------------AFLGEMEKLAGVVNTVGKLAYVPQQAWIQN 722
Cdd:PRK13645 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQltngliisetgqtivgdyaipANLKKIKEVKRLRKEIGLVFQFPEYQLFQE 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 723 aTVRDNILFGQTY----DRKRYNKV---IDACALRADIdilsagdlteIGEKGINLSGGQKQRISLARAVYSDADLYLLD 795
Cdd:PRK13645 107 -TIEKDIAFGPVNlgenKQEAYKKVpelLKLVQLPEDY----------VKRSPFELSGGQKRRVALAGIIAMDGNTLVLD 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 939619619 796 DPLSAVDAHvGKHIFEEVIGPKGILARKSRVLVTHGV-TFLPQVDSIYVIKMGEISESGTFDQLVKN 861
Cdd:PRK13645 176 EPTGGLDPK-GEEDFINLFERLNKEYKKRIIMVTHNMdQVLRIADEVIVMHEGKVISIGSPFEIFSN 241
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
671-828 |
1.43e-06 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 52.89 E-value: 1.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 671 VKKGSLVALVGTVGSGKSSVVQAFLGEM-----------------------------EKLA-GVVNTVGKLAYVPQQAWI 720
Cdd:PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELipnlgdyeeepswdevlkrfrgtelqnyfKKLYnGEIKVVHKPQYVDLIPKV 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 721 QNATVRDniLFGQTYDRKRYNKVIDACALRADIDilsagdlTEIGEkginLSGGQKQRISLARAVYSDADLYLLDDPLSA 800
Cdd:PRK13409 176 FKGKVRE--LLKKVDERGKLDEVVERLGLENILD-------RDISE----LSGGELQRVAIAAALLRDADFYFFDEPTSY 242
|
170 180 190
....*....|....*....|....*....|
gi 939619619 801 VDahvgkhIFEEVIGPKGI--LARKSRVLV 828
Cdd:PRK13409 243 LD------IRQRLNVARLIreLAEGKYVLV 266
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
1326-1477 |
1.48e-06 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 51.03 E-value: 1.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1326 LRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMG---LHMLRSRLTIIPQD-PVLFSGSLR 1401
Cdd:PRK10908 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKnreVPFLRRQIGMIFQDhHLLMDRTVY 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 939619619 1402 INLD-PFEIK--TDDEIWKALELSHLKsfVKSLAAGLNHEIaeggeNLSVGQRQLVCLARALLRKTKVLVLDEATAAVD 1477
Cdd:PRK10908 98 DNVAiPLIIAgaSGDDIRRRVSAALDK--VGLLDKAKNFPI-----QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD 169
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1326-1477 |
1.62e-06 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 52.70 E-value: 1.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1326 LRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASmglhmlRSrltiiPQDPvLFSGSLRINLD 1405
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVT------RS-----PQDG-LANGIVYISED 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1406 PfeiKTDDEIwkaLELShlksfVK---SLAA---------GLNH--EIAEGGE-----------------NLSVGQRQLV 1454
Cdd:PRK10762 336 R---KRDGLV---LGMS-----VKenmSLTAlryfsraggSLKHadEQQAVSDfirlfniktpsmeqaigLLSGGNQQKV 404
|
170 180
....*....|....*....|...
gi 939619619 1455 CLARALLRKTKVLVLDEATAAVD 1477
Cdd:PRK10762 405 AIARGLMTRPKVLILDEPTRGVD 427
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
664-814 |
1.72e-06 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 50.44 E-value: 1.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG------------KLAYVP-QQAWIQNATVRDNIL 730
Cdd:cd03266 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGfdvvkepaearrRLGFVSdSTGLYDRLTARENLE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 731 -FGQTYDRKRYnkvidacALRADIDILSagDLTEIGE----KGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAhV 805
Cdd:cd03266 101 yFAGLYGLKGD-------ELTARLEELA--DRLGMEElldrRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDV-M 170
|
....*....
gi 939619619 806 GKHIFEEVI 814
Cdd:cd03266 171 ATRALREFI 179
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
664-791 |
1.95e-06 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 52.34 E-value: 1.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK--------------LAYVPQ----QAWIQNATV 725
Cdd:COG3845 274 LKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEditglsprerrrlgVAYIPEdrlgRGLVPDMSV 353
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 939619619 726 RDNILFGQtYDRKRYNK--VIDACALRA-------DIDILSAGDLTEIGekgiNLSGGQKQRISLARAVYSDADL 791
Cdd:COG3845 354 AENLILGR-YRRPPFSRggFLDRKAIRAfaeelieEFDVRTPGPDTPAR----SLSGGNQQKVILARELSRDPKL 423
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
657-800 |
2.06e-06 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 52.24 E-value: 2.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 657 SWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQA---------------FLGEMEKLAGVVNTVGK-LAYVPQQ-AW 719
Cdd:PRK13549 14 TFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVlsgvyphgtyegeiiFEGEELQASNIRDTERAgIAIIHQElAL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 720 IQNATVRDNILFGQ---TYDRKRYNKVIDACA-----LRADIDIlsagdlteiGEKGINLSGGQKQRISLARAVYSDADL 791
Cdd:PRK13549 94 VKELSVLENIFLGNeitPGGIMDYDAMYLRAQkllaqLKLDINP---------ATPVGNLGLGQQQLVEIAKALNKQARL 164
|
....*....
gi 939619619 792 YLLDDPLSA 800
Cdd:PRK13549 165 LILDEPTAS 173
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
657-803 |
2.21e-06 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 52.13 E-value: 2.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 657 SWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQA---------------FLGEMEKLAGVVNTVGK-LAYVPQQ-AW 719
Cdd:TIGR02633 10 TFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKIlsgvyphgtwdgeiyWSGSPLKASNIRDTERAgIVIIHQElTL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 720 IQNATVRDNILFGQTY----DRKRYNKVIDAC-ALRADIDILSAGDLTEIGEKGinlsGGQKQRISLARAVYSDADLYLL 794
Cdd:TIGR02633 90 VPELSVAENIFLGNEItlpgGRMAYNAMYLRAkNLLRELQLDADNVTRPVGDYG----GGQQQLVEIAKALNKQARLLIL 165
|
....*....
gi 939619619 795 DDPLSAVDA 803
Cdd:TIGR02633 166 DEPSSSLTE 174
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
651-802 |
2.22e-06 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 50.52 E-value: 2.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 651 IENGEFSWGDEITlrNINIEVKKGSLVALVGTVGSGKS---SVVQAFLGEMEklagvvntvGKLayvpqqaWIQNA---- 723
Cdd:COG3840 4 LDDLTYRYGDFPL--RFDLTIAAGERVAILGPSGAGKStllNLIAGFLPPDS---------GRI-------LWNGQdlta 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 724 ---------------------TVRDNILFGQTYDRKrynkvidacaLRAD-----IDILSAGDLTEIGEK--GInLSGGQ 775
Cdd:COG3840 66 lppaerpvsmlfqennlfphlTVAQNIGLGLRPGLK----------LTAEqraqvEQALERVGLAGLLDRlpGQ-LSGGQ 134
|
170 180
....*....|....*....|....*..
gi 939619619 776 KQRISLARAVYSDADLYLLDDPLSAVD 802
Cdd:COG3840 135 RQRVALARCLVRKRPILLLDEPFSALD 161
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1327-1478 |
2.25e-06 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 52.09 E-value: 2.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1327 RGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASmglhmlRSRLTIIPQDPVLFSGSLRIN--L 1404
Cdd:PRK09700 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISP------RSPLDAVKKGMAYITESRRDNgfF 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1405 DPFEIKTDDEIWKALELSHLKSFV----------------KSLA---AGLNHEIAEggenLSVGQRQLVCLARALLRKTK 1465
Cdd:PRK09700 354 PNFSIAQNMAISRSLKDGGYKGAMglfhevdeqrtaenqrELLAlkcHSVNQNITE----LSGGNQQKVLISKWLCCCPE 429
|
170
....*....|...
gi 939619619 1466 VLVLDEATAAVDL 1478
Cdd:PRK09700 430 VIIFDEPTRGIDV 442
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
1309-1477 |
2.28e-06 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 51.17 E-value: 2.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGL---DLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIdGVDIASMG-----LH 1380
Cdd:PRK13634 3 ITFQKVEHRYQYKTpfeRRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-GERVITAGkknkkLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1381 MLRSRLTIIPQDP--VLFSGSLR--INLDP--FEIKTDDEIWKALELSHLksfvkslaAGLNHEIAEGGE-NLSVGQRQL 1453
Cdd:PRK13634 82 PLRKKVGIVFQFPehQLFEETVEkdICFGPmnFGVSEEDAKQKAREMIEL--------VGLPEELLARSPfELSGGQMRR 153
|
170 180
....*....|....*....|....
gi 939619619 1454 VCLARALLRKTKVLVLDEATAAVD 1477
Cdd:PRK13634 154 VAIAGVLAMEPEVLVLDEPTAGLD 177
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
669-802 |
2.67e-06 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 49.80 E-value: 2.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 669 IEVKKGSLVALVGTVGSGKSSVVQAFLG-EMEK-----LAGVVNTVGKLAYVPQQAWIQ------NATVRDNILFGQT-- 734
Cdd:cd03298 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGfETPQsgrvlINGVDVTAAPPADRPVSMLFQennlfaHLTVEQNVGLGLSpg 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 939619619 735 -----YDRKRynkvIDACALRADIDILsagDLTEIGEkginLSGGQKQRISLARAVYSDADLYLLDDPLSAVD 802
Cdd:cd03298 99 lkltaEDRQA----IEVALARVGLAGL---EKRLPGE----LSGGERQRVALARVLVRDKPVLLLDEPFAALD 160
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
1298-1477 |
2.82e-06 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 51.90 E-value: 2.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1298 NKPKNWPqegRVEFQNFQVRYREGlDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASM 1377
Cdd:PRK10522 315 QAFPDWQ---TLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAE 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1378 GLHMLRSRLTIIPQDPVLFSGSLriNLDPFEIKTDD-EIW-KALELSHLKSFVkslaaglNHEIAEggENLSVGQRQLVC 1455
Cdd:PRK10522 391 QPEDYRKLFSAVFTDFHLFDQLL--GPEGKPANPALvEKWlERLKMAHKLELE-------DGRISN--LKLSKGQKKRLA 459
|
170 180
....*....|....*....|..
gi 939619619 1456 LARALLRKTKVLVLDEATAAVD 1477
Cdd:PRK10522 460 LLLALAEERDILLLDEWAADQD 481
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1326-1480 |
2.97e-06 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 50.40 E-value: 2.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1326 LRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRII---EAAGGRISIDG----------VDIASMGLHM--------LRS 1384
Cdd:PRK09984 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLItgdKSAGSHIELLGrtvqregrlaRDIRKSRANTgyifqqfnLVN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1385 RLTIIPQDPVLFSGSL---RINLDPFEIKTDDEIWKALElshlksfvkslAAGLNHEIAEGGENLSVGQRQLVCLARALL 1461
Cdd:PRK09984 100 RLSVLENVLIGALGSTpfwRTCFSWFTREQKQRALQALT-----------RVGMVHFAHQRVSTLSGGQQQRVAIARALM 168
|
170
....*....|....*....
gi 939619619 1462 RKTKVLVLDEATAAVDLET 1480
Cdd:PRK09984 169 QQAKVILADEPIASLDPES 187
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
667-803 |
3.25e-06 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 51.00 E-value: 3.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 667 INIEVKKGSLVALVGTVGSGKSSVVQ--AFL-----GEMEkLAG-VVNTVG----KLAYVpqqawIQN------ATVRDN 728
Cdd:PRK11650 23 IDLDVADGEFIVLVGPSGCGKSTLLRmvAGLeritsGEIW-IGGrVVNELEpadrDIAMV-----FQNyalyphMSVREN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 729 ILFGqtydrkrynkvidacaL------RADID--ILSAGDLTEIGE----KGINLSGGQKQRISLARAVYSDADLYLLDD 796
Cdd:PRK11650 97 MAYG----------------LkirgmpKAEIEerVAEAARILELEPlldrKPRELSGGQRQRVAMGRAIVREPAVFLFDE 160
|
....*..
gi 939619619 797 PLSAVDA 803
Cdd:PRK11650 161 PLSNLDA 167
|
|
| ABC_6TM_CvaB_RaxB_like |
cd18567 |
Six-transmembrane helical domain (6-TMD) of the ABC transporter subunit of the type 1 ... |
995-1185 |
3.84e-06 |
|
Six-transmembrane helical domain (6-TMD) of the ABC transporter subunit of the type 1 secretion systems, CvaB and RaxB, and similar proteins; This group represents the six-transmembrane helical domain (6-TMD) of the peptidase-containing ABC transporter subunit of T1SS (Type 1 secretion systems), such as Escherichia coli colicin V secretion/processing ATP-binding protein CvaB and putative ABC transporter RaxB. These ABC-transporter proteins carry a proteolytic peptidase domain in their N-termini, termed as C39, which cleaves a double glycine (GG) motif-containing signal peptide from substrates before secretion. RaxB is part of the T1SS RaxABC, which is responsible for the type 1-dependent secretion of the bacterial quorum-sensing molecule AvrXa21. Both CvaB and RaxB belong to a subgroup of T1SS ABC transporters that contain a C39 peptidase domain. T1SS are found in pathogenic Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium.
Pssm-ID: 350011 [Multi-domain] Cd Length: 294 Bit Score: 50.54 E-value: 3.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 995 LVLNFVFQAFQIGSNLwLTQWANDQN-VANDTGLRDMYLGVYGAFGFGQVATNFFSSLAI-SLGCLKCSQLLHQtLLYYN 1072
Cdd:cd18567 8 LLLSLALELFALASPL-YLQLVIDEViVSGDRDLLTVLAIGFGLLLLLQALLSALRSWLVlYLSTSLNLQWTSN-LFRHL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1073 LRWPMELFDTTPLGRIVNRFSKdIDTIDNVLPFNIRVVIGQAYMVLATIVVISLSTPIfLAVIVPIAFLYYFAQRFyvAT 1152
Cdd:cd18567 86 LRLPLSYFEKRHLGDIVSRFGS-LDEIQQTLTTGFVEALLDGLMAILTLVMMFLYSPK-LALIVLAAVALYALLRL--AL 161
|
170 180 190
....*....|....*....|....*....|....*.
gi 939619619 1153 SRQLMRLES---VSRSPIYSHFSETVTGASTIRAYN 1185
Cdd:cd18567 162 YPPLRRATEeqiVASAKEQSHFLETIRGIQTIKLFG 197
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
652-802 |
4.11e-06 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 49.98 E-value: 4.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 652 ENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAG----------------VVNTVGKLAyvp 715
Cdd:PRK10253 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGhvwldgehiqhyaskeVARRIGLLA--- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 716 qqawiQNATVRDNILFGQTYDRKRY---------NKVIDACALRAdidiLSAGDLTEIGEKGIN-LSGGQKQRISLARAV 785
Cdd:PRK10253 88 -----QNATTPGDITVQELVARGRYphqplftrwRKEDEEAVTKA----MQATGITHLADQSVDtLSGGQRQRAWIAMVL 158
|
170
....*....|....*..
gi 939619619 786 YSDADLYLLDDPLSAVD 802
Cdd:PRK10253 159 AQETAIMLLDEPTTWLD 175
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
664-871 |
5.51e-06 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 50.82 E-value: 5.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEK---------LAGVVNTVGKL----AYVPQQ-AWIQNATVRDNI 729
Cdd:TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKgvkgsgsvlLNGMPIDAKEMraisAYVQQDdLFIPTLTVREHL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 730 LF----------GQTYDRKRYNKVIDACALR--ADIDILSAGDLteigeKGinLSGGQKQRISLARAVYSDADLYLLDDP 797
Cdd:TIGR00955 121 MFqahlrmprrvTKKEKRERVDEVLQALGLRkcANTRIGVPGRV-----KG--LSGGERKRLAFASELLTDPPLLFCDEP 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 798 LSAVDAHVGKHIFEEVIGpkgiLARKSR--VLVTH--GVTFLPQVDSIYVIKMGEISESGTFDQLVK--NKGAF------ 865
Cdd:TIGR00955 194 TSGLDSFMAYSVVQVLKG----LAQKGKtiICTIHqpSSELFELFDKIILMAEGRVAYLGSPDQAVPffSDLGHpcpeny 269
|
....*...
gi 939619619 866 --ADFIIQ 871
Cdd:TIGR00955 270 npADFYVQ 277
|
|
| ABC_6TM_YknU_like |
cd18542 |
Six-transmembrane helical domain (6-TMD) of the uncharacterized ABC transporter YknU and ... |
986-1279 |
5.63e-06 |
|
Six-transmembrane helical domain (6-TMD) of the uncharacterized ABC transporter YknU and similar proteins; This group represents the six-transmembrane helical domain (6-TMD) of the uncharacterized ABC transporter YknU and similar proteins. This TMD possesses the ATP-binding cassette (ABC) exporter fold, which is characterized by 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds and a various type of lipids. ABC transporters typically consist of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The sequences and structures of the TMDs are quite varied between the different type of transporters, suggesting significant structural diversity of the translocated substrates, while NBDs are conserved among all ABC transporters. The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane. However, some ABC genes are organized as half-transporters, which must form either homodimers or heterodimers to form a functional transporter. The ABC exporters play a role in multidrug resistance to antibiotics and anticancer agents, and mutations in these proteins have been shown to cause severe human diseases such as cystic fibrosis.
Pssm-ID: 349986 [Multi-domain] Cd Length: 292 Bit Score: 49.74 E-value: 5.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 986 VGIFLSVATLVLNFVfqafqigsNLWLTQWANDQN-VANDTGLRDMYLGVYGAFGFGQVATNFFSSLAISlgclKCSQLL 1064
Cdd:cd18542 3 LAILALLLATALNLL--------IPLLIRRIIDSViGGGLRELLWLLALLILGVALLRGVFRYLQGYLAE----KASQKV 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1065 HQTL---LYYNL-RWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIVV-ISLSTP---IFLAVIV 1136
Cdd:cd18542 71 AYDLrndLYDHLqRLSFSFHDKARTGDLMSRCTSDVDTIRRFLAFGLVELVRAVLLFIGALIImFSINWKltlISLAIIP 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1137 PIAFL-YYFAQRF---YVATSRQLMRLESVsrspiyshFSETVTGASTIRAYNVGD----RFIEESDAKVDKNqvckyps 1208
Cdd:cd18542 151 FIALFsYVFFKKVrpaFEEIREQEGELNTV--------LQENLTGVRVVKAFAREDyeieKFDKENEEYRDLN------- 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1209 VIANRWLAIR------LEMVGNLIILFASLFAVLGGQTNPG-LVGLSvSYALQvtqtLNWLVRMS----SDIETNIVSVE 1277
Cdd:cd18542 216 IKLAKLLAKYwplmdfLSGLQIVLVLWVGGYLVINGEITLGeLVAFI-SYLWM----LIWPVRQLgrliNDMSRASASAE 290
|
..
gi 939619619 1278 RI 1279
Cdd:cd18542 291 RI 292
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
667-854 |
5.67e-06 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 51.55 E-value: 5.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 667 INIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK------------LAYVPQQAWI-QNATVRDNILF-G 732
Cdd:TIGR01257 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKdietnldavrqsLGMCPQHNILfHHLTVAEHILFyA 1028
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 733 QTYDRKRYNKVIDACALRADidilsAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEE 812
Cdd:TIGR01257 1029 QLKGRSWEEAQLEMEAMLED-----TGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDL 1103
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 939619619 813 VIGPKgilARKSRVLVTHGVTFLPQV-DSIYVIKMGEISESGT 854
Cdd:TIGR01257 1104 LLKYR---SGRTIIMSTHHMDEADLLgDRIAIISQGRLYCSGT 1143
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
649-797 |
7.15e-06 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 49.11 E-value: 7.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 649 MSIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK--------------LAYV 714
Cdd:PRK11614 6 LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKditdwqtakimreaVAIV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 715 PQQAWI-QNATVRDNILFGQTY-DRKRYN----KVIDACALRADIDILSAGdlteigekgiNLSGGQKQRISLARAVYSD 788
Cdd:PRK11614 86 PEGRRVfSRMTVEENLAMGGFFaERDQFQerikWVYELFPRLHERRIQRAG----------TMSGGEQQMLAIGRALMSQ 155
|
....*....
gi 939619619 789 ADLYLLDDP 797
Cdd:PRK11614 156 PRLLLLDEP 164
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1329-1477 |
7.38e-06 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 50.29 E-value: 7.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1329 VSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDG--VDIASMGlHMLRSRLTIIPQD-------PVLfsgS 1399
Cdd:PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGkpIDIRSPR-DAIRAGIMLCPEDrkaegiiPVH---S 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1400 LRINLD--------PFEIKTDDEiWkalELSHLKSFVKSLA---AGLNHEIAeggeNLSVGQRQLVCLARALLRKTKVLV 1468
Cdd:PRK11288 348 VADNINisarrhhlRAGCLINNR-W---EAENADRFIRSLNiktPSREQLIM----NLSGGNQQKAILGRWLSEDMKVIL 419
|
....*....
gi 939619619 1469 LDEATAAVD 1477
Cdd:PRK11288 420 LDEPTRGID 428
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
1342-1477 |
7.61e-06 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 50.78 E-value: 7.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1342 VGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASmGLHMLRSRLTIIPQDPVLFSGSLRINLDPFEIKTDDEIWKALEL 1421
Cdd:TIGR01257 962 LGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL 1040
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 939619619 1422 sHLKSFVKSlaAGLNHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVD 1477
Cdd:TIGR01257 1041 -EMEAMLED--TGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVD 1093
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
664-810 |
8.99e-06 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 50.11 E-value: 8.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK--------------LAYVPQQA-WIQNATVRDN 728
Cdd:PRK10982 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKeidfksskealengISMVHQELnLVLQRSVMDN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 729 ILFGQT------YDRKRYNKVIDACALRADIDIlsagdltEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVD 802
Cdd:PRK10982 94 MWLGRYptkgmfVDQDKMYRDTKAIFDELDIDI-------DPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLT 166
|
....*...
gi 939619619 803 AHVGKHIF 810
Cdd:PRK10982 167 EKEVNHLF 174
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
1321-1479 |
9.00e-06 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 48.86 E-value: 9.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1321 GLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSL--TLALFRIieAAGGRISIDG------VDIASMGLHMLRSRLTIIPQd 1392
Cdd:PRK11124 13 GAHQALFDITLDCPQGETLVLLGPSGAGKSSLlrVLNLLEM--PRSGTLNIAGnhfdfsKTPSDKAIRELRRNVGMVFQ- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1393 pvlfsgslRINLDPFEIKTDDEI---WKALELShlKSFVKSLAAGL--NHEIAEGGE----NLSVGQRQLVCLARALLRK 1463
Cdd:PRK11124 90 --------QYNLWPHLTVQQNLIeapCRVLGLS--KDQALARAEKLleRLRLKPYADrfplHLSGGQQQRVAIARALMME 159
|
170
....*....|....*.
gi 939619619 1464 TKVLVLDEATAAVDLE 1479
Cdd:PRK11124 160 PQVLLFDEPTAALDPE 175
|
|
| ABC_6TM_Rv0194_D2_like |
cd18546 |
Six-transmembrane helical domain 2 (TMD2) of the multidrug efflux ABC transporter Rv0194 and ... |
1073-1243 |
1.04e-05 |
|
Six-transmembrane helical domain 2 (TMD2) of the multidrug efflux ABC transporter Rv0194 and similar proteins; This group includes the six-transmembrane helical domain 2 (TMD2) of the multidrug efflux ATP-binding/permease protein Rv0194 from Mycobacterium tuberculosis and similar proteins. This TMD possesses the ATP-binding cassette (ABC) exporter fold, which is characterized by 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds and a various type of lipids. ABC transporters typically consist of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The sequences and structures of the TMDs are quite varied between the different type of transporters, suggesting significant structural diversity of the translocated substrates, while NBDs are conserved among all ABC transporters. The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane. However, some ABC genes are organized as half-transporters, which must form either homodimers or heterodimers to form a functional transporter. The ABC exporters play a role in multidrug resistance to antibiotics and anticancer agents, and mutations in these proteins have been shown to cause severe human diseases such as cystic fibrosis.
Pssm-ID: 349990 [Multi-domain] Cd Length: 292 Bit Score: 49.02 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1073 LRWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQA-YMVLATIVVISLSTPIFL---AVIVPIAFLYYFAQRF 1148
Cdd:cd18546 83 QRLSLDFHERETSGRIMTRMTSDIDALSELLQTGLVQLVVSLlTLVGIAVVLLVLDPRLALvalAALPPLALATRWFRRR 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1149 YVATSRQlMRlESVSRspIYSHFSETVTGASTIRAYN----VGDRFIEESDAKVDKNqvckypsVIANRWLAIR---LEM 1221
Cdd:cd18546 163 SSRAYRR-AR-ERIAA--VNADLQETLAGIRVVQAFRrerrNAERFAELSDDYRDAR-------LRAQRLVAIYfpgVEL 231
|
170 180
....*....|....*....|....*
gi 939619619 1222 VGNL---IILFASLFAVLGGQTNPG 1243
Cdd:cd18546 232 LGNLataAVLLVGAWRVAAGTLTVG 256
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
642-858 |
1.11e-05 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 48.94 E-value: 1.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 642 DSSKPhPMSIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAG------------------ 703
Cdd:PRK14271 16 DAAAP-AMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGyrysgdvllggrsifnyr 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 704 -VVNTVGKLAYVPQQAWIQNATVRDNILFGQtydrkRYNKVIDACALRAdidiLSAGDLTEIG----------EKGINLS 772
Cdd:PRK14271 95 dVLEFRRRVGMLFQRPNPFPMSIMDNVLAGV-----RAHKLVPRKEFRG----VAQARLTEVGlwdavkdrlsDSPFRLS 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 773 GGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIfEEVIgpKGILARKSRVLVTHGVTFLPQV-DSIYVIKMGEISE 851
Cdd:PRK14271 166 GGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKI-EEFI--RSLADRLTVIIVTHNLAQAARIsDRAALFFDGRLVE 242
|
....*..
gi 939619619 852 SGTFDQL 858
Cdd:PRK14271 243 EGPTEQL 249
|
|
| ABC_6TM_PrtD_LapB_HlyB_like |
cd18782 |
uncharacterized subgroup of the six-transmembrane helical domain (6-TMD) of the ABC subunit in ... |
1073-1185 |
1.16e-05 |
|
uncharacterized subgroup of the six-transmembrane helical domain (6-TMD) of the ABC subunit in the type 1 secretion systems (PrtD, LapB, HylB), and similar proteins; Uncharacterized subgroup of the six-transmembrane helical domain (6-TMD) of the ABC subunit in the type 1 secretion systems (T1SS), including PrtD, LapB, and HylB. T1SS are found in pathogenic Gram-negative bacteria (such as Escherichia coli, Vibrio cholerae or Bordetella pertussis) to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type 1 secretion apparatus. In the case of the Escherichia coli HlyA T1SS, these three proteins are HlyB (a dimeric ABC transporter), HlyD (MFP, oligomeric membrane fusion protein) and TolC (OMP, a trimeric oligomeric outer membrane protein). These three components assemble into a complex spanning both membranes and provide a channel for the translocation of unfolded polypeptides. In addition, PrtD is the integral membrane ATP-binding cassette component of the Erwinia chrysanthemi metalloprotease secretion system (PrtDEF). LabB is an inner-membrane transporter component of the LapBCE system that is required for the secretion of the LapA adhesion.
Pssm-ID: 350055 [Multi-domain] Cd Length: 294 Bit Score: 49.13 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1073 LRWPMELFDTTPLGRIVNRFSkDIDTIDNVLPFN-IRVVIGQAYMVLATIVVISLS---TPIFLAVIVPIAFLYYFAQRF 1148
Cdd:cd18782 86 LRLPLGFFDKRPVGELSTRIS-ELDTIRGFLTGTaLTTLLDVLFSVIYIAVLFSYSpllTLVVLATVPLQLLLTFLFGPI 164
|
90 100 110
....*....|....*....|....*....|....*..
gi 939619619 1149 YvatsRQLMRLESVSRSPIYSHFSETVTGASTIRAYN 1185
Cdd:cd18782 165 L----RRQIRRRAEASAKTQSYLVESLTGIQTVKAQN 197
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
664-830 |
1.33e-05 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 48.27 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVG-----------------KLAYVPQ-QAWIQNATV 725
Cdd:PRK11629 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGqpmsklssaakaelrnqKLGFIYQfHHLLPDFTA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 726 RDNI----LFGqtydrkrynKVIDACALRADIDILSAGDLTEIGE-KGINLSGGQKQRISLARAVYSDADLYLLDDPLSA 800
Cdd:PRK11629 105 LENVamplLIG---------KKKPAEINSRALEMLAAVGLEHRANhRPSELSGGERQRVAIARALVNNPRLVLADEPTGN 175
|
170 180 190
....*....|....*....|....*....|
gi 939619619 801 VDAHVGKHIFeEVIGPKGILARKSRVLVTH 830
Cdd:PRK11629 176 LDARNADSIF-QLLGELNRLQGTAFLVVTH 204
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
664-858 |
1.65e-05 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 49.30 E-value: 1.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGeMEKLAGVVNTVGK-LAYVPQQAW------IQ------NA------T 724
Cdd:COG4172 302 VDGVSLTLRRGETLGLVGESGSGKSTLGLALLR-LIPSEGEIRFDGQdLDGLSRRALrplrrrMQvvfqdpFGslsprmT 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 725 VRDNI-----LFGQTYDRK-RYNKVIDAcalradidilsagdLTEIG-----------EkginLSGGQKQRISLARAVYS 787
Cdd:COG4172 381 VGQIIaeglrVHGPGLSAAeRRARVAEA--------------LEEVGldpaarhryphE----FSGGQRQRIAIARALIL 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 788 DADLYLLDDPLSAVDAHVGKHIFEevigpkgILARKSRvlvTHGVTFL-----PQV-----DSIYVIKMGEISESGTFDQ 857
Cdd:COG4172 443 EPKLLVLDEPTSALDVSVQAQILD-------LLRDLQR---EHGLAYLfishdLAVvralaHRVMVMKDGKVVEQGPTEQ 512
|
.
gi 939619619 858 L 858
Cdd:COG4172 513 V 513
|
|
| ABC_6TM_MsbA_like |
cd18552 |
Six-transmembrane helical domain of the bacterial ABC lipid flippase MsbA and similar proteins; ... |
334-625 |
1.76e-05 |
|
Six-transmembrane helical domain of the bacterial ABC lipid flippase MsbA and similar proteins; The bacterial lipid flippase MsbA is found in Gram-negative bacteria and transports lipid A and lipopolysaccharide (LPS) from the cytoplasmic leaflet to the periplasmic leaflet of the inner membrane. MsbA is also a polyspecific transporter capable of transporting a broad spectrum of drug molecules. Additionally, MsbA exhibits significant sequence similarity to mammalian multidrug resistance (MDR) proteins such as human MDR protein 1 (MDR1) and LmrA from Lactococcus lactis. This subgroup also contains a putative transporter Brevibacillus brevis TycD; the location of the tycD gene within the Tyc (tyrocidine) biosynthesis operon suggests that TycD may play a role in the secretion of the cyclic decapeptide antibiotic tyrocidine. This transmembrane (TM) subunit possesses the ATP-binding cassette (ABC) exporter fold, which is characterized by 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds, a various type of lipids and polypeptides. ABC transporters typically consist of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The sequences and structures of the TMDs are quite varied between the different type of transporters, suggesting significant structural diversity of the translocated substrates, while NBDs are conserved among all ABC transporters. The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane by alternating between inward- and outward-facing conformations. Moreover, some ABC genes are organized as half-transporters, which must form either homodimers or heterodimers to form a functional transporter. The ABC exporters play a role in multidrug resistance to antibiotics and anticancer agents, and mutations in these proteins have been shown to cause severe human diseases such as cystic fibrosis.
Pssm-ID: 349996 [Multi-domain] Cd Length: 292 Bit Score: 48.19 E-value: 1.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 334 LFGALMKLFTDTLTFAQPQVLSLIISFVeaqdaepewkgilyAVLLFVLAAaqtfiLGQYFHRMFI--VGLRIRTALINA 411
Cdd:cd18552 17 ALAWLLKPLLDDIFVEKDLEALLLVPLA--------------IIGLFLLRG-----LASYLQTYLMayVGQRVVRDLRND 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 412 IYRKALRISNSTKKESTVGEIVNLMAVDAQRFME-LTTYLNMIWSAPLQ-IGLALYFLWQ--QLgpSVLAGLAVMIILIP 487
Cdd:cd18552 78 LFDKLLRLPLSFFDRNSSGDLISRITNDVNQVQNaLTSALTVLVRDPLTvIGLLGVLFYLdwKL--TLIALVVLPLAALP 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 488 VnGVIASRIKTYQIRQMKYKDERVKLMNEVLSGIKVLKLYAWEPS----FEKQVLDIRDKEIATLRSTAYLNAGTSFLWS 563
Cdd:cd18552 156 I-RRIGKRLRKISRRSQESMGDLTSVLQETLSGIRVVKAFGAEDYeikrFRKANERLRRLSMKIARARALSSPLMELLGA 234
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 939619619 564 CApfLVSLVTFATYvlidenNVLDATKT---FVSL--SLFNILRfPLTMLPMLITNLVQTQVSVNRI 625
Cdd:cd18552 235 IA--IALVLWYGGY------QVISGELTpgeFISFitALLLLYQ-PIKRLSNVNANLQRGLAAAERI 292
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
671-802 |
2.04e-05 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 47.75 E-value: 2.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 671 VKKGSLVALVGTVGSGKSSVVQAFLGEM-----------------------------EKL-AGVVNTVGKLAYV---PQQ 717
Cdd:cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLkpnlgkfddppdwdeildefrgselqnyfTKLlEGDVKVIVKPQYVdliPKA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 718 AwiqNATVRDniLFGQTYDRKRYNKVIDACalradidilsagDLTEIGEKGI-NLSGGQKQRISLARAVYSDADLYLLDD 796
Cdd:cd03236 103 V---KGKVGE--LLKKKDERGKLDELVDQL------------ELRHVLDRNIdQLSGGELQRVAIAAALARDADFYFFDE 165
|
....*.
gi 939619619 797 PLSAVD 802
Cdd:cd03236 166 PSSYLD 171
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
664-861 |
2.19e-05 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 47.73 E-value: 2.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQA-------------FLGE------MEKLA--GVVNTvgklayvpqqawIQN 722
Cdd:COG0411 20 VDDVSLEVERGEIVGLIGPNGAGKTTLFNLitgfyrptsgrilFDGRditglpPHRIArlGIART------------FQN 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 723 A------TVRDNILFGQTYDRK-----------RYNKVIDACALRADiDILSAGDLTEI-GEKGINLSGGQKQRISLARA 784
Cdd:COG0411 88 PrlfpelTVLENVLVAAHARLGrgllaallrlpRARREEREARERAE-ELLERVGLADRaDEPAGNLSYGQQRRLEIARA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 785 VYSDADLYLLDDPLSAVdAHVGKHIFEEVIgpKGILARKSR--VLVTHGVTFLPQV-DSIYVIKMGEISESGTFDQLVKN 861
Cdd:COG0411 167 LATEPKLLLLDEPAAGL-NPEETEELAELI--RRLRDERGItiLLIEHDMDLVMGLaDRIVVLDFGRVIAEGTPAEVRAD 243
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
664-858 |
2.37e-05 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 48.89 E-value: 2.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK--------------LAYVPQQAWI-QNATVRDN 728
Cdd:PRK15439 27 LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNpcarltpakahqlgIYLVPQEPLLfPNLSVKEN 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 729 ILFGQTYDRKRYNKVID-----ACALRADIdilSAGDLtEIGEkginlsggqKQRISLARAVYSDADLYLLDDPLSAVDA 803
Cdd:PRK15439 107 ILFGLPKRQASMQKMKQllaalGCQLDLDS---SAGSL-EVAD---------RQIVEILRGLMRDSRILILDEPTASLTP 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 939619619 804 HVGKHIFeevigpkgilaRKSRVLVT--HGVTF----LPQV----DSIYVIKMGEISESGTFDQL 858
Cdd:PRK15439 174 AETERLF-----------SRIRELLAqgVGIVFishkLPEIrqlaDRISVMRDGTIALSGKTADL 227
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
650-804 |
2.57e-05 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 47.47 E-value: 2.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 650 SIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVV------------QAFLGEmEKLAGVVNTV--GKLAYVP 715
Cdd:PRK10575 13 ALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLkmlgrhqppsegEILLDA-QPLESWSSKAfaRKVAYLP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 716 QQ-AWIQNATVRDNILFGQ-----------TYDRKRYNKVIDACALRAdidilSAGDLTEigekgiNLSGGQKQRISLAR 783
Cdd:PRK10575 92 QQlPAAEGMTVRELVAIGRypwhgalgrfgAADREKVEEAISLVGLKP-----LAHRLVD------SLSGGERQRAWIAM 160
|
170 180
....*....|....*....|..
gi 939619619 784 AVYSDADLYLLDDPLSAVD-AH 804
Cdd:PRK10575 161 LVAQDSRCLLLDEPTSALDiAH 182
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
659-854 |
3.65e-05 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 47.05 E-value: 3.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 659 GDE-ITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVV----------------NTVGKLAYVPQQAWIq 721
Cdd:PRK13648 19 SDAsFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIfynnqaitddnfeklrKHIGIVFQNPDNQFV- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 722 NATVRDNILFGQ-----TYDR--KRYNKVIDacalraDIDILSAGDlteigEKGINLSGGQKQRISLARAVYSDADLYLL 794
Cdd:PRK13648 98 GSIVKYDVAFGLenhavPYDEmhRRVSEALK------QVDMLERAD-----YEPNALSGGQKQRVAIAGVLALNPSVIIL 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 939619619 795 DDPLSAVDAHVGKHIFE---EVIGPKGIlarkSRVLVTHGVTFLPQVDSIYVIKMGEISESGT 854
Cdd:PRK13648 167 DEATSMLDPDARQNLLDlvrKVKSEHNI----TIISITHDLSEAMEADHVIVMNKGTVYKEGT 225
|
|
| ABC_6TM_Sav1866_like |
cd18554 |
Six-transmembrane helical domain of the bacterial ABC multidrug exporter Sav1866 and similar ... |
1080-1279 |
3.80e-05 |
|
Six-transmembrane helical domain of the bacterial ABC multidrug exporter Sav1866 and similar proteins; This group represents the homodimeric bacterial ABC multidrug exporter Sav1866, which is homologous to the lipid flippase MsbA, and both of which are functionally related to the human P-glycoprotein multidrug transporter (ABCB1 or MDR1). This transmembrane (TM) subunit possesses the ATP-binding cassette (ABC) exporter fold, which is characterized by 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds, a various type of lipids and polypeptides. ABC transporters typically consist of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The sequences and structures of the TMDs are quite varied between the different type of transporters, suggesting significant structural diversity of the translocated substrates, while NBDs are conserved among all ABC transporters. The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane by alternating between inward- and outward-facing conformations. Bacterial exporters are typically formed by dimers of TMD-NBD half-transporters. Thus, most bacterial ABC transporters are formed of two identical TMDs and two identical NBDs.
Pssm-ID: 349998 [Multi-domain] Cd Length: 299 Bit Score: 47.41 E-value: 3.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1080 FDTTPLGRIVNRFSKDID-TIDNVLPFNIRVVIGQAYMVLATIVVISLSTPIFLA--VIVPIAFL--YYFAQRFyvatsR 1154
Cdd:cd18554 97 YANNRSGEIISRVINDVEqTKDFITTGLMNIWLDMITIIIAICIMLVLNPKLTFVslVIFPFYILavKYFFGRL-----R 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1155 QLMRLESVSRSPIYSHFSETVTGASTIRAYNVGDRFIEESDakvDKNQVCKYPSVIANRWLAIRLEMVGN-------LII 1227
Cdd:cd18554 172 KLTKERSQALAEVQGFLHERIQGMSVIKSFALEKHEQKQFD---KRNGHFLTRALKHTRWNAKTFSAVNTitdlaplLVI 248
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 939619619 1228 LFASLFAVLGGQTNPGLVGLsVSYALQVTQTLNWLVRMSSDIETNIVSVERI 1279
Cdd:cd18554 249 GFAAYLVIEGNLTVGTLVAF-VGYMERMYSPLRRLVNSFTTLTQSFASMDRV 299
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
1309-1480 |
4.30e-05 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 48.01 E-value: 4.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYreGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSltlaLFRII----EAAGGRISI-DGVDIASMGlhmlR 1383
Cdd:TIGR03719 323 IEAENLTKAF--GDKLLIDDLSFKLPPGGIVGVIGPNGAGKST----LFRMItgqeQPDSGTIEIgETVKLAYVD----Q 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1384 SRLTIIPQDPV----------LFSGSLRIN----LDPFEIKTDDEIWKALELShlksfvkslaaglnheiaeGGEnlsvg 1449
Cdd:TIGR03719 393 SRDALDPNKTVweeisggldiIKLGKREIPsrayVGRFNFKGSDQQKKVGQLS-------------------GGE----- 448
|
170 180 190
....*....|....*....|....*....|.
gi 939619619 1450 qRQLVCLARALLRKTKVLVLDEATAAVDLET 1480
Cdd:TIGR03719 449 -RNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
664-803 |
5.11e-05 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 46.10 E-value: 5.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTV---------------GKLAYVPQQAW-IQNATVRD 727
Cdd:cd03233 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIhyngipykefaekypGEIIYVSEEDVhFPTLTVRE 102
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 939619619 728 NILFgqtydrkrynkvidACALRADiDILsagdlteigeKGInlSGGQKQRISLARAVYSDADLYLLDDPLSAVDA 803
Cdd:cd03233 103 TLDF--------------ALRCKGN-EFV----------RGI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDS 151
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
769-802 |
5.63e-05 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 47.18 E-value: 5.63e-05
10 20 30
....*....|....*....|....*....|....
gi 939619619 769 INLSGGQKQRISLARAVYSDADLYLLDDPLSAVD 802
Cdd:PRK11144 127 GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
664-803 |
5.89e-05 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 47.42 E-value: 5.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVV-------QAFLGEMEKLAGVvnTVGklaYVPQQAWI-QNATVRDNIL--FGQ 733
Cdd:PRK11819 23 LKDISLSFFPGAKIGVLGLNGAGKSTLLrimagvdKEFEGEARPAPGI--KVG---YLPQEPQLdPEKTVRENVEegVAE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 734 TYD-RKRYNKVIDACA---------------LRADIDILSAGDLT---EI---------GEKGI-NLSGGQKQRISLARA 784
Cdd:PRK11819 98 VKAaLDRFNEIYAAYAepdadfdalaaeqgeLQEIIDAADAWDLDsqlEIamdalrcppWDAKVtKLSGGERRRVALCRL 177
|
170
....*....|....*....
gi 939619619 785 VYSDADLYLLDDPLSAVDA 803
Cdd:PRK11819 178 LLEKPDMLLLDEPTNHLDA 196
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
664-804 |
6.58e-05 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 46.17 E-value: 6.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKLAYVPQQAWIQNATVrdniLFGQ---------- 733
Cdd:cd03267 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGV----VFGQktqlwwdlpv 112
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 939619619 734 --TYD--RKRYNkvIDACALRADIDILSAG-DLTEIGEKGI-NLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAH 804
Cdd:cd03267 113 idSFYllAAIYD--LPPARFKKRLDELSELlDLEELLDTPVrQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV 187
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
771-861 |
6.60e-05 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 46.37 E-value: 6.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 771 LSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHI---FEEVIGPKGIlarkSRVLVTHGVTFLPQV-DSIYVIKM 846
Cdd:COG4167 150 LSSGQKQRVALARALILQPKIIIADEALAALDMSVRSQIinlMLELQEKLGI----SYIYVSQHLGIVKHIsDKVLVMHQ 225
|
90
....*....|....*
gi 939619619 847 GEISESGTFDQLVKN 861
Cdd:COG4167 226 GEVVEYGKTAEVFAN 240
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
659-858 |
6.62e-05 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 46.33 E-value: 6.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 659 GDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVV----------------NTVGkLAYVPQQAWIQN 722
Cdd:PRK13652 15 GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVlirgepitkenirevrKFVG-LVFQNPDDQIFS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 723 ATVRDNILFGQTydrkryNKVIDACALRADID-ILSAGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADLYLLDDPLSA 800
Cdd:PRK13652 94 PTVEQDIAFGPI------NLGLDEETVAHRVSsALHMLGLEELRDRVPHhLSGGEKKRVAIAGVIAMEPQVLVLDEPTAG 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 939619619 801 VDAHVGKHIFeEVIGPKGILARKSRVLVTHGVTFLPQV-DSIYVIKMGEISESGTFDQL 858
Cdd:PRK13652 168 LDPQGVKELI-DFLNDLPETYGMTVIFSTHQLDLVPEMaDYIYVMDKGRIVAYGTVEEI 225
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
770-854 |
7.16e-05 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 46.72 E-value: 7.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 770 NLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEevigpkgILARKSR------VLVTHGVTFLPQV-DSIY 842
Cdd:PRK11153 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE-------LLKDINRelgltiVLITHEMDVVKRIcDRVA 212
|
90
....*....|..
gi 939619619 843 VIKMGEISESGT 854
Cdd:PRK11153 213 VIDAGRLVEQGT 224
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
1336-1485 |
7.65e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 44.29 E-value: 7.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1336 GEKVGIVGRTGAGKSSLTLALFRIIEAAGGRIsidgvdiasmglhmlrsrltiipqdpvlfsgsLRINLDPFEIKTDDEI 1415
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGV--------------------------------IYIDGEDILEEVLDQL 49
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1416 WkalelshlksfvkslaaglNHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQ 1485
Cdd:smart00382 50 L-------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLL 100
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1326-1393 |
8.17e-05 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 46.07 E-value: 8.17e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 939619619 1326 LRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDG-----VDIASMGL----HMLRSRLTIIPQDP 1393
Cdd:PRK11701 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMrdgqlRDLYALSEaerrRLLRTEWGFVHQHP 98
|
|
| ABC_6TM_exporter_like |
cd18563 |
Six-transmembrane helical domain (TMD) of an uncharacterized ABC exporter, and similar ... |
1076-1279 |
9.42e-05 |
|
Six-transmembrane helical domain (TMD) of an uncharacterized ABC exporter, and similar proteins; This group includes a subunit of six transmembrane (TM) helices typically found in the ATP-binding cassette (ABC) transporters that function as exporters, which contain 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds and a various type of lipids. ABC transporters typically consist of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The sequences and structures of the TMDs are quite varied between the different type of transporters, suggesting the chemical diversity of the translocated substrates, while NBDs are conserved among all ABC transporters. The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane. However, some ABC genes are organized as half-transporters, which must form either homodimers or heterodimers to form a functional transporter. The ABC exporters play a role in multidrug resistance to antibiotics and anticancer agents, and mutations in these proteins have been shown to cause severe human diseases such as cystic fibrosis.
Pssm-ID: 350007 [Multi-domain] Cd Length: 296 Bit Score: 45.96 E-value: 9.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1076 PMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIVV-ISLSTPIFLAVIVPIAFLYYFAQRFYVAtSR 1154
Cdd:cd18563 90 SLSFFDKRQTGSLMSRVTSDTDRLQDFLSDGLPDFLTNILMIIGIGVVlFSLNWKLALLVLIPVPLVVWGSYFFWKK-IR 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1155 QLMRLESVSRSPIYSHFSETVTGASTIRAYN----VGDRFIEESDAKVDKNQvckypsVIANRWLAIR-----LEMVGNL 1225
Cdd:cd18563 169 RLFHRQWRRWSRLNSVLNDTLPGIRVVKAFGqekrEIKRFDEANQELLDANI------RAEKLWATFFplltfLTSLGTL 242
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 939619619 1226 IILFASLFAVLGGQTNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERI 1279
Cdd:cd18563 243 IVWYFGGRQVLSGTMTLGTLVAFLSYLGMFYGPLQWLSRLNNWITRALTSAERI 296
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
659-811 |
1.11e-04 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 46.62 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 659 GDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFL------GEMEKLAGVVNTVGKLAYVPQQAWIQnatvrdnILFG 732
Cdd:PRK15134 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLrlinsqGEIWFDGQPLHNLNRRQLLPVRHRIQ-------VVFQ 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 733 QTYD--RKRYNKV-IDACALRADIDILSAGDLTE-----IGEKGIN----------LSGGQKQRISLARAVYSDADLYLL 794
Cdd:PRK15134 370 DPNSslNPRLNVLqIIEEGLRVHQPTLSAAQREQqviavMEEVGLDpetrhrypaeFSGGQRQRIAIARALILKPSLIIL 449
|
170
....*....|....*..
gi 939619619 795 DDPLSAVDAHVGKHIFE 811
Cdd:PRK15134 450 DEPTSSLDKTVQAQILA 466
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
664-803 |
1.16e-04 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 44.54 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSV--VQAFLGEMEKLAGVVNTVGKL---------AYVPQQ-AWIQNATVRDNILF 731
Cdd:cd03232 23 LNNISGYVKPGTLTALMGESGAGKTTLldVLAGRKTAGVITGEILINGRPldknfqrstGYVEQQdVHSPNLTVREALRF 102
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 939619619 732 gqtydrkrynkvidACALRAdidilsagdlteigekginLSGGQKQRISLARAVYSDADLYLLDDPLSAVDA 803
Cdd:cd03232 103 --------------SALLRG-------------------LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDS 141
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
1325-1485 |
1.21e-04 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 45.86 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1325 VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTIIPQDPVLFSgslRINl 1404
Cdd:PRK14271 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQ---RPN- 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1405 dPFEIKTDDEIW---KALELSHLKSFVKSLAAGLNH---------EIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEA 1472
Cdd:PRK14271 112 -PFPMSIMDNVLagvRAHKLVPRKEFRGVAQARLTEvglwdavkdRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEP 190
|
170
....*....|...
gi 939619619 1473 TAAVDLETDDLIQ 1485
Cdd:PRK14271 191 TSALDPTTTEKIE 203
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
659-802 |
1.36e-04 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 46.66 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 659 GDEITLRNINIEVKKGSLVALVGTVGSGKSS---------VVQAflGEMEKLAGVV------NTVG-KLAYVPQ---QAW 719
Cdd:NF033858 12 GKTVALDDVSLDIPAGCMVGLIGPDGVGKSSllsliagarKIQQ--GRVEVLGGDMadarhrRAVCpRIAYMPQglgKNL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 720 IQNATVRDNI-----LFGQtydrkrynkviDACALRADID-ILSAGDLTEIGEK--GiNLSGGQKQRISLARAVYSDADL 791
Cdd:NF033858 90 YPTLSVFENLdffgrLFGQ-----------DAAERRRRIDeLLRATGLAPFADRpaG-KLSGGMKQKLGLCCALIHDPDL 157
|
170
....*....|.
gi 939619619 792 YLLDDPLSAVD 802
Cdd:NF033858 158 LILDEPTTGVD 168
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
664-862 |
1.42e-04 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 45.46 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQ---AFL----GEME---------------KLAGVVNTVGK----------- 710
Cdd:PRK13651 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEhlnALLlpdtGTIEwifkdeknkkktkekEKVLEKLVIQKtrfkkikkike 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 711 ----LAYVPQQAWIQ--NATVRDNILFG-------QTYDRKRYNKVIDACALraDIDILSagdlteigEKGINLSGGQKQ 777
Cdd:PRK13651 103 irrrVGVVFQFAEYQlfEQTIEKDIIFGpvsmgvsKEEAKKRAAKYIELVGL--DESYLQ--------RSPFELSGGQKR 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 778 RISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEevIGPKGILARKSRVLVTHGV-TFLPQVDSIYVIKMGEISESG-TF 855
Cdd:PRK13651 173 RVALAGILAMEPDFLVFDEPTAGLDPQGVKEILE--IFDNLNKQGKTIILVTHDLdNVLEWTKRTIFFKDGKIIKDGdTY 250
|
....*..
gi 939619619 856 DQLVKNK 862
Cdd:PRK13651 251 DILSDNK 257
|
|
| ABC_6TM_Pgp_ABCB1_D2_like |
cd18578 |
Six-transmembrane helical domain 2 (TMD2) of P-glycoprotein 1 (Pgp) and related proteins; ... |
333-632 |
1.98e-04 |
|
Six-transmembrane helical domain 2 (TMD2) of P-glycoprotein 1 (Pgp) and related proteins; P-glycoprotein 1 (permeability glycoprotein, Pgp) also known as multidrug resistance protein 1 (MDR1) or ATP-binding cassette sub-family B member 1 (ABCB1) is a member of the superfamily of ATP-binding cassette (ABC) transporters. Pgp acts as an ATP-dependent efflux pump, binds drugs with diverse chemical structures and pump them out of the drug resistant cancer cells. It is responsible for decreased drug accumulation in multidrug-resistant cells and mediates the development of resistance to anticancer drugs. Pgp consists of two alpha-helical transmembrane domains (TMDs) and two cytoplasmic nucleotide-binding domains (NBDs). This protein also functions as a transporter in the blood-brain barrier. In addition to Pgp, breast cancer resistance protein (BCRP/MXR/ABC-P/ABCG2) and multidrug resistance-associated proteins (MRP1/ABCC1 and MRP2/ABCC2) function as drug efflux pumps of anticancer drugs, and overexpression of these transporters induces multidrug resistance to a broad spectrum of anticancer drugs including doxorubicin, taxol, and vinca alkaloids by actively pumping the drugs out of cells.
Pssm-ID: 350022 [Multi-domain] Cd Length: 317 Bit Score: 45.14 E-value: 1.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 333 FLFGALMKLFTdtLTFAQpqvlsLIISFVEAQDAEPEWKGILYAVLLFVLAAAQ---TFILGQYFHRM-FIVGLRIRTAL 408
Cdd:cd18578 19 IIAGAVFPVFA--ILFSK-----LISVFSLPDDDELRSEANFWALMFLVLAIVAgiaYFLQGYLFGIAgERLTRRLRKLA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 409 INAIYRKalRISNSTKKESTVGEIVNLMAVDAQRFMELT-----TYLNMIWSAPLQIGLALYFLWqQLGpsvLAGLAVMI 483
Cdd:cd18578 92 FRAILRQ--DIAWFDDPENSTGALTSRLSTDASDVRGLVgdrlgLILQAIVTLVAGLIIAFVYGW-KLA---LVGLATVP 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 484 ILIpvnGVIASRIKTYQIRQMKYKDERV---KLMNEVLSGIKVLKLYAWEPSFEKQVLDIRDKEIATLRSTAYLNAGTSF 560
Cdd:cd18578 166 LLL---LAGYLRMRLLSGFEEKNKKAYEessKIASEAVSNIRTVASLTLEDYFLEKYEEALEEPLKKGLRRALISGLGFG 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 939619619 561 LWSCAPFLVSLVTF---ATYVLIDENNVLDATKTFVSL--SLFNILRFpLTMLPmlitNLVQTQVSVNRINKFLNSE 632
Cdd:cd18578 243 LSQSLTFFAYALAFwygGRLVANGEYTFEQFFIVFMALifGAQSAGQA-FSFAP----DIAKAKAAAARIFRLLDRK 314
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
651-797 |
2.12e-04 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 45.71 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 651 IENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGKL--AYVPQ--QAWIQNATVR 726
Cdd:PRK11147 322 MENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLevAYFDQhrAELDPEKTVM 401
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 939619619 727 DNILFG-QTYD---RKRYnkvidacALRADIDILSAGDLTEIGEKGinLSGGQKQRISLARAVYSDADLYLLDDP 797
Cdd:PRK11147 402 DNLAEGkQEVMvngRPRH-------VLGYLQDFLFHPKRAMTPVKA--LSGGERNRLLLARLFLKPSNLLILDEP 467
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
1309-1471 |
2.19e-04 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 45.22 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYrEGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSltlaLFRIIeaAG------GRISIDG--V-------- 1372
Cdd:PRK11650 4 LKLQAVRKSY-DGKTQVIKGIDLDVADGEFIVLVGPSGCGKST----LLRMV--AGleritsGEIWIGGrvVnelepadr 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1373 DIAsM-----GL--HM---------LRSRltiipqdpvlfsgslriNLDPFEIKTD-DEIWKALELSHLksfvkslaagL 1435
Cdd:PRK11650 77 DIA-MvfqnyALypHMsvrenmaygLKIR-----------------GMPKAEIEERvAEAARILELEPL----------L 128
|
170 180 190
....*....|....*....|....*....|....*.
gi 939619619 1436 NHEIAEggenLSVGQRQLVCLARALLRKTKVLVLDE 1471
Cdd:PRK11650 129 DRKPRE----LSGGQRQRVAMGRAIVREPAVFLFDE 160
|
|
| ABC_6TM_YknV_like |
cd18545 |
Six-transmembrane helical domain (6-TMD) of the uncharacterized ABC transporter YknV and ... |
995-1279 |
2.26e-04 |
|
Six-transmembrane helical domain (6-TMD) of the uncharacterized ABC transporter YknV and similar proteins; This group represents the six-transmembrane helical domain (6-TMD) of the uncharacterized ABC transporter YknV and similar proteins. This TMD possesses the ATP-binding cassette (ABC) exporter fold, which is characterized by 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds and a various type of lipids. ABC transporters typically consist of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The sequences and structures of the TMDs are quite varied between the different type of transporters, suggesting significant structural diversity of the translocated substrates, while NBDs are conserved among all ABC transporters. The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane. However, some ABC genes are organized as half-transporters, which must form either homodimers or heterodimers to form a functional transporter. The ABC exporters play a role in multidrug resistance to antibiotics and anticancer agents, and mutations in these proteins have been shown to cause severe human diseases such as cystic fibrosis.
Pssm-ID: 349989 [Multi-domain] Cd Length: 293 Bit Score: 44.77 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 995 LVLNFVFQAFQIGSNL---WLTQWANDQNVAN-DTGLRDMYLGVYGAFGFGQVATNFFSSLAIS-LGclkcsqllhQTLL 1069
Cdd:cd18545 2 LLLALLLMLLSTAASLagpYLIKIAIDEYIPNgDLSGLLIIALLFLALNLVNWVASRLRIYLMAkVG---------QRIL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1070 YyNLRwpMELF-----------DTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLAtIVVISLSTPIFLA----V 1134
Cdd:cd18545 73 Y-DLR--QDLFshlqklsfsffDSRPVGKILSRVINDVNSLSDLLSNGLINLIPDLLTLVG-IVIIMFSLNVRLAlvtlA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1135 IVPIAFL--YYFAQRfyvatSRQLMRLESVSRSPIYSHFSETVTGASTIRAYNVGDRFIEESDAKVDKNqvckypsVIAN 1212
Cdd:cd18545 149 VLPLLVLvvFLLRRR-----ARKAWQRVRKKISNLNAYLHESISGIRVIQSFAREDENEEIFDELNREN-------RKAN 216
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 939619619 1213 RWlAIRLE-----------MVGNLIILFASLFAVLGGQTNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERI 1279
Cdd:cd18545 217 MR-AVRLNalfwplvelisALGTALVYWYGGKLVLGGAITVGVLVAFIGYVGRFWQPIRNLSNFYNQLQSAMASAERI 293
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
664-862 |
2.31e-04 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 45.93 E-value: 2.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVVNTVGK-------------LAYVPQQAWIQNATVRDNI- 729
Cdd:PTZ00243 1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGReigayglrelrrqFSMIPQDPVLFDGTVRQNVd 1405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 730 LFGQTYDRKRYnKVIDACALRADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYS-DADLYLLDDPLSAVDAHVGKH 808
Cdd:PTZ00243 1406 PFLEASSAEVW-AALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKkGSGFILMDEATANIDPALDRQ 1484
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 939619619 809 IFEEVIGPkgiLARKSRVLVTHGVTFLPQVDSIYVIKMGEISESGTFDQLVKNK 862
Cdd:PTZ00243 1485 IQATVMSA---FSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNR 1535
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
668-802 |
2.39e-04 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 44.19 E-value: 2.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 668 NIEVKKGSLVALVGTVGSGKS---SVVQAFL----GEMeKLAGVVNTVGKLAYVPQQAWIQ------NATVRDNILFG-- 732
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKStllNLIAGFLtpasGSL-TLNGQDHTTTPPSRRPVSMLFQennlfsHLTVAQNIGLGln 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 939619619 733 -----QTYDRKRYNKVIDACALRADIDILSAgdlteigekgiNLSGGQKQRISLARAVYSDADLYLLDDPLSAVD 802
Cdd:PRK10771 98 pglklNAAQREKLHAIARQMGIEDLLARLPG-----------QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
1332-1489 |
2.48e-04 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 44.32 E-value: 2.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1332 NIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASmglhmlrSRLTIIPQDPV----LFSGSLRINLDPF 1407
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSY-------KPQYIKADYEGtvrdLLSSITKDFYTHP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1408 EIKTddEIWKALELSHLksfvkslaagLNHEIAEggenLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQ-- 1485
Cdd:cd03237 94 YFKT--EIAKPLQIEQI----------LDREVPE----LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASkv 157
|
....
gi 939619619 1486 IRHF 1489
Cdd:cd03237 158 IRRF 161
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
647-829 |
3.01e-04 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 45.26 E-value: 3.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 647 HPMSIENGEFSWGDEITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEK--LAGVV---------NTVGKLAYVP 715
Cdd:PLN03211 67 HKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGnnFTGTIlannrkptkQILKRTGFVT 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 716 QQAWI-QNATVRDNILFGQTY----DRKRYNKVIDACALRADIDILSAGDlTEIGEKGIN-LSGGQKQRISLARAVYSDA 789
Cdd:PLN03211 147 QDDILyPHLTVRETLVFCSLLrlpkSLTKQEKILVAESVISELGLTKCEN-TIIGNSFIRgISGGERKRVSIAHEMLINP 225
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 939619619 790 DLYLLDDPLSAVDAHVGKHIFEEVIGpkgiLARKSRVLVT 829
Cdd:PLN03211 226 SLLILDEPTSGLDATAAYRLVLTLGS----LAQKGKTIVT 261
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
672-802 |
3.04e-04 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 45.16 E-value: 3.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 672 KKGSLVALVGTVGSGKSSVVQAFLGEM-----------------------------EKLA-GVVNTVGKLAYV---PQQA 718
Cdd:COG1245 97 KKGKVTGILGPNGIGKSTALKILSGELkpnlgdydeepswdevlkrfrgtelqdyfKKLAnGEIKVAHKPQYVdliPKVF 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 719 wiqNATVRDniLFGQTYDRKRYNKVIDACALRADIDilsagdlTEIGEkginLSGGQKQRISLARAVYSDADLYLLDDPL 798
Cdd:COG1245 177 ---KGTVRE--LLEKVDERGKLDELAEKLGLENILD-------RDISE----LSGGELQRVAIAAALLRDADFYFFDEPS 240
|
....
gi 939619619 799 SAVD 802
Cdd:COG1245 241 SYLD 244
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
772-805 |
3.49e-04 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 44.57 E-value: 3.49e-04
10 20 30
....*....|....*....|....*....|....
gi 939619619 772 SGGQKQRISLARAVYSDADLYLLDDPLSAVDAHV 805
Cdd:PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSV 189
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
1300-1477 |
3.71e-04 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 44.78 E-value: 3.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1300 PKNWPQEGRV--EFQNFQVRYREGLD-LVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALF------RIieaaGGRISID 1370
Cdd:NF040905 247 PERTPKIGEVvfEVKNWTVYHPLHPErKVVDDVSLNVRRGEIVGIAGLMGAGRTELAMSVFgrsygrNI----SGTVFKD 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1371 G--VDIASM------GLHML---RSRLTIIPQDPVLFSGSLrINLDPF----------EIKTDDEIWKALelsHLKSfvk 1429
Cdd:NF040905 323 GkeVDVSTVsdaidaGLAYVtedRKGYGLNLIDDIKRNITL-ANLGKVsrrgvideneEIKVAEEYRKKM---NIKT--- 395
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 939619619 1430 slaaglnHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVD 1477
Cdd:NF040905 396 -------PSVFQKVGNLSGGNQQKVVLSKWLFTDPDVLILDEPTRGID 436
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
664-803 |
4.30e-04 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 44.52 E-value: 4.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 664 LRNINIEVKKGSLVALVGTVGSGKSS--------------------VVQAFLGEMEKL-AGVVNTVGKLAYVPqqawiqN 722
Cdd:PRK11288 20 LDDISFDCRAGQVHALMGENGAGKSTllkilsgnyqpdagsilidgQEMRFASTTAALaAGVAIIYQELHLVP------E 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 723 ATVRDNILFGQTYDRKrynKVIDACALRADidilSAGDLTEIGE------KGINLSGGQKQRISLARAVYSDADLYLLDD 796
Cdd:PRK11288 94 MTVAENLYLGQLPHKG---GIVNRRLLNYE----AREQLEHLGVdidpdtPLKYLSIGQRQMVEIAKALARNARVIAFDE 166
|
....*..
gi 939619619 797 PLSAVDA 803
Cdd:PRK11288 167 PTSSLSA 173
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
1326-1486 |
5.38e-04 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 44.34 E-value: 5.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1326 LRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIA--------SMGLHMLRSRLTIIPQDPVLfs 1397
Cdd:PRK10982 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDfksskealENGISMVHQELNLVLQRSVM-- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1398 gslrinldpfeiktdDEIW------KALELSHLKSF--VKSLAAGLNHEI--AEGGENLSVGQRQLVCLARALLRKTKVL 1467
Cdd:PRK10982 92 ---------------DNMWlgryptKGMFVDQDKMYrdTKAIFDELDIDIdpRAKVATLSVSQMQMIEIAKAFSYNAKIV 156
|
170 180
....*....|....*....|
gi 939619619 1468 VLDEATAAV-DLETDDLIQI 1486
Cdd:PRK10982 157 IMDEPTSSLtEKEVNHLFTI 176
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
1322-1478 |
5.93e-04 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 43.71 E-value: 5.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1322 LDLVLRGVSfniqggekvGIVGRTGAGKSSLTLALFRIIEAAGGRISIDG---VDIAS-MGLHMLRSRLTIIPQDPVLF- 1396
Cdd:PRK11144 19 LTLPAQGIT---------AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGrvlFDAEKgICLPPEKRRIGYVFQDARLFp 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1397 ----SGSLRINLDPFEIKTDDEIWKALELSH-LKSFVKSLAaglnheiaeGGEnlsvgqRQLVCLARALLRKTKVLVLDE 1471
Cdd:PRK11144 90 hykvRGNLRYGMAKSMVAQFDKIVALLGIEPlLDRYPGSLS---------GGE------KQRVAIGRALLTAPELLLMDE 154
|
....*..
gi 939619619 1472 ATAAVDL 1478
Cdd:PRK11144 155 PLASLDL 161
|
|
| ABC_6TM_LmrA_like |
cd18551 |
Six-transmembrane helical domain of the multidrug resistance ABC transporter LmrA and similar ... |
1073-1237 |
6.68e-04 |
|
Six-transmembrane helical domain of the multidrug resistance ABC transporter LmrA and similar proteins; This group represents the six-transmembrane helical domain of the multidrug resistance ABC transporter LmrA from Lactococcus lactis and similar proteins. This transmembrane (TM) subunit possesses the ATP-binding cassette (ABC) exporter fold, which is characterized by 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds, a various type of lipids and polypeptides. ABC transporters typically consist of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The sequences and structures of the TMDs are quite varied between the different type of transporters, suggesting significant structural diversity of the translocated substrates, while NBDs are conserved among all ABC transporters. The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane by alternating between inward- and outward-facing conformations. Moreover, some ABC genes are organized as half-transporters, which must form either homodimers or heterodimers to form a functional transporter. The ABC exporters play a role in multidrug resistance to antibiotics and anticancer agents, and mutations in these proteins have been shown to cause severe human diseases such as cystic fibrosis.
Pssm-ID: 349995 [Multi-domain] Cd Length: 289 Bit Score: 43.58 E-value: 6.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1073 LRWPMELFDTTPLGRIVNRFSKDIDTIDNVLPFNIRVVIGQAYMVLATIVV-ISLSTPIFLAVI--VPIAFL--YYFAQR 1147
Cdd:cd18551 80 LRLPVSFFDRRRSGDLVSRVTNDTTLLRELITSGLPQLVTGVLTVVGAVVLmFLLDWVLTLVTLavVPLAFLiiLPLGRR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1148 FYVATSRQLMRLESVSrspiySHFSETVTGASTIRAYNVGDRFIEESDAKVDKnqvCKYPSVIANRWLAIrLEMVGNLII 1227
Cdd:cd18551 160 IRKASKRAQDALGELS-----AALERALSAIRTVKASNAEERETKRGGEAAER---LYRAGLKAAKIEAL-IGPLMGLAV 230
|
170
....*....|
gi 939619619 1228 lFASLFAVLG 1237
Cdd:cd18551 231 -QLALLVVLG 239
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
1329-1478 |
7.34e-04 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 43.58 E-value: 7.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1329 VSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAG----GRISIDGVDIASMGLHMLR----SRLTIIPQDPVlfsgsl 1400
Cdd:PRK11022 26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGrvmaEKLEFNGQDLQRISEKERRnlvgAEVAMIFQDPM------ 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1401 rINLDP-----FEI------------KTDDEiwKALELSHLKSfVKSLAAGLN---HEiaeggenLSVGQRQLVCLARAL 1460
Cdd:PRK11022 100 -TSLNPcytvgFQImeaikvhqggnkKTRRQ--RAIDLLNQVG-IPDPASRLDvypHQ-------LSGGMSQRVMIAMAI 168
|
170
....*....|....*...
gi 939619619 1461 LRKTKVLVLDEATAAVDL 1478
Cdd:PRK11022 169 ACRPKLLIADEPTTALDV 186
|
|
| ABC_6TM_Pgp_ABCB1_D1_like |
cd18577 |
Six-transmembrane helical domain 1 (TMD1) of P-glycoprotein 1 (Pgp) and related proteins; ... |
986-1200 |
8.64e-04 |
|
Six-transmembrane helical domain 1 (TMD1) of P-glycoprotein 1 (Pgp) and related proteins; P-glycoprotein 1 (permeability glycoprotein, Pgp) also known as multidrug resistance protein 1 (MDR1) or ATP-binding cassette sub-family B member 1 (ABCB1) is a member of the superfamily of ATP-binding cassette (ABC) transporters. Pgp acts as an ATP-dependent efflux pump, binds drugs with diverse chemical structures and pump them out of the drug resistant cancer cells. It is responsible for decreased drug accumulation in multidrug-resistant cells and mediates the development of resistance to anticancer drugs. Pgp consists of two alpha-helical transmembrane domains (TMDs) and two cytoplasmic nucleotide-binding domains (NBDs). This protein also functions as a transporter in the blood-brain barrier. In addition to Pgp, breast cancer resistance protein (BCRP/MXR/ABC-P/ABCG2) and multidrug resistance-associated proteins (MRP1/ABCC1 and MRP2/ABCC2) function as drug efflux pumps of anticancer drugs, and overexpression of these transporters induces multidrug resistance to a broad spectrum of anticancer drugs including doxorubicin, taxol, and vinca alkaloids by actively pumping the drugs out of cells.
Pssm-ID: 350021 [Multi-domain] Cd Length: 300 Bit Score: 43.23 E-value: 8.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 986 VGIFLSVA--------TLVLNFVFQAFQIGSNLWLTQwANDQNVANDTGLRDMYLGVyGAFGFGQVATNFFSSLAIslgc 1057
Cdd:cd18577 3 IGLLAAIAagaalplmTIVFGDLFDAFTDFGSGESSP-DEFLDDVNKYALYFVYLGI-GSFVLSYIQTACWTITGE---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1058 lkcsqllHQT----LLYYN--LRWPMELFDTTPLGRIVNRFSKDIDTidnvlpfnIRVVIGQ--AYMV--LATIV---VI 1124
Cdd:cd18577 77 -------RQArrirKRYLKalLRQDIAWFDKNGAGELTSRLTSDTNL--------IQDGIGEklGLLIqsLSTFIagfII 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1125 SLS-----TPIFLAVIVPIAFLYYFAQRFYVATSRQLMRLESVSrspiYSHFSETVTGASTIRAYNVGDRFIEESDAKVD 1199
Cdd:cd18577 142 AFIyswklTLVLLATLPLIAIVGGIMGKLLSKYTKKEQEAYAKA----GSIAEEALSSIRTVKAFGGEEKEIKRYSKALE 217
|
.
gi 939619619 1200 K 1200
Cdd:cd18577 218 K 218
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
621-853 |
1.01e-03 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 43.64 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 621 SVNRINKFLNSEELDPNSVLHDSSKpHPMSIENGEFSWGDeitlrNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEK 700
Cdd:TIGR03269 263 GVSEVEKECEVEVGEPIIKVRNVSK-RYISVDRGVVKAVD-----NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 701 LAGVVNT-VGklayvpqQAWIQ----------NATVRDNILFgQTYDRKRYNKVI------------DACALRADIDILS 757
Cdd:TIGR03269 337 TSGEVNVrVG-------DEWVDmtkpgpdgrgRAKRYIGILH-QEYDLYPHRTVLdnlteaiglelpDELARMKAVITLK 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 758 AGDLTEIGEKGI------NLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAhvgkhiFEEVIGPKGIL-ARK----SRV 826
Cdd:TIGR03269 409 MVGFDEEKAEEIldkypdELSEGERHRVALAQVLIKEPRIVILDEPTGTMDP------ITKVDVTHSILkAREemeqTFI 482
|
250 260
....*....|....*....|....*...
gi 939619619 827 LVTHGVTFLPQV-DSIYVIKMGEISESG 853
Cdd:TIGR03269 483 IVSHDMDFVLDVcDRAALMRDGKIVKIG 510
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
1309-1477 |
1.04e-03 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 42.80 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDLVLRG---VSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMG----LHM 1381
Cdd:PRK13643 2 IKFEKVNYTYQPNSPFASRAlfdIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSkqkeIKP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1382 LRSRLTIIPQDP--VLFSGSL--RINLDPFEIKTDDEIWKALELSHLKsfvkslAAGLNHEIAEGGE-NLSVGQRQLVCL 1456
Cdd:PRK13643 82 VRKKVGVVFQFPesQLFEETVlkDVAFGPQNFGIPKEKAEKIAAEKLE------MVGLADEFWEKSPfELSGGQMRRVAI 155
|
170 180
....*....|....*....|.
gi 939619619 1457 ARALLRKTKVLVLDEATAAVD 1477
Cdd:PRK13643 156 AGILAMEPEVLVLDEPTAGLD 176
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
772-861 |
1.15e-03 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 42.77 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 772 SGGQKQRISLARAVYSDADLYLLDDPLSAVDAhvgkHIFEEVIGPKGILARK---SRVLVTHGVTFLPQV-DSIYVIKMG 847
Cdd:PRK15079 163 SGGQCQRIGIARALILEPKLIICDEPVSALDV----SIQAQVVNLLQQLQREmglSLIFIAHDLAVVKHIsDRVLVMYLG 238
|
90
....*....|....
gi 939619619 848 EISESGTFDQLVKN 861
Cdd:PRK15079 239 HAVELGTYDEVYHN 252
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
771-802 |
1.21e-03 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 42.80 E-value: 1.21e-03
10 20 30
....*....|....*....|....*....|..
gi 939619619 771 LSGGQKQRISLARAVYSDADLYLLDDPLSAVD 802
Cdd:COG4608 158 FSGGQRQRIGIARALALNPKLIVCDEPVSALD 189
|
|
| ABC_6TM_T1SS_like |
cd18555 |
Six-transmembrane helical domain (6-TMD) of the ATP-binding cassette subunit in the type 1 ... |
987-1279 |
1.31e-03 |
|
Six-transmembrane helical domain (6-TMD) of the ATP-binding cassette subunit in the type 1 secretion systems, and similar proteins; This group represents the six-transmembrane helical domain (6-TMD) of the ABC subunit in the type 1 secretion systems (T1SS) and similar proteins. These transporter subunits include HylB, PrtD, CyaB, CvaB, RsaD, HasD, LipB, and LapB, among many others. T1SS are found in pathogenic Gram-negative bacteria (such as Escherichia coli, Vibrio cholerae or Bordetella pertussis) to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. In the case of the Escherichia coli HlyA T1SS, these three proteins are HlyB (a dimeric ABC transporter), HlyD (MFP, oligomeric membrane fusion protein) and TolC (OMP, a trimeric oligomeric outer membrane protein). Most targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion. However, the 10 kDa Escherichia coli colicin V (CvaB) targets the ABC transporter using a cleaved, N-terminal signal sequence. Almost all transport substrates of the type I system have critical functions in attacking host cells either directly or by being essential for host colonization. The ABC-dependent T1SS transports various molecules, from ions, drugs, to proteins of various sizes up to 900 kDa. The molecules secreted vary in size from the small Escherichia coli peptide colicin V, (10 kDa) to the Pseudomonas fluorescens cell adhesion protein LapA of 520 kDa. The best characterized are the RTX toxins such as the adenylate cyclase (CyaA) toxin from Bordetella pertussis, the causative agent of whooping cough, and the lipases such as LipA. Type I secretion is also involved in export of non-protein substrates such as cyclic beta-glucans and polysaccharides.
Pssm-ID: 349999 [Multi-domain] Cd Length: 294 Bit Score: 42.50 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 987 GIFLSVatLVLNFVFQAFQIGsNLWLTQWANDQ-NVANDTGLRDMYLGVYGAFGFGQVATNFFSSLAIslgclkcsqLLH 1065
Cdd:cd18555 2 KLLISI--LLLSLLLQLLTLL-IPILTQYVIDNvIVPGNLNLLNVLGIGILILFLLYGLFSFLRGYII---------IKL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1066 QTLLYYN---------LRWPMELFDTTPLGRIVNRFSkDIDTIDNVLPFNIRVVIGQAYMVLATIVVISLSTP----IFL 1132
Cdd:cd18555 70 QTKLDKSlmsdffehlLKLPYSFFENRSSGDLLFRAN-SNVYIRQILSNQVISLIIDLLLLVIYLIYMLYYSPlltlIVL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1133 AVIVPIAFLYYFAQRFYvatsRQLMRLESVSRSPIYSHFSETVTGASTIRAYNVGDRFIEESDaKVDKNQVCKYPSviAN 1212
Cdd:cd18555 149 LLGLLIVLLLLLTRKKI----KKLNQEEIVAQTKVQSYLTETLYGIETIKSLGSEKNIYKKWE-NLFKKQLKAFKK--KE 221
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 939619619 1213 RWLAI------RLEMVGNLIILFASLFAVLGGQ-TNPGLVGLSvSYALQVTQTLNWLVRMSSDIETNIVSVERI 1279
Cdd:cd18555 222 RLSNIlnsissSIQFIAPLLILWIGAYLVINGElTLGELIAFS-SLAGSFLTPIVSLINSYNQFILLKSYLERL 294
|
|
| ABC_6TM_HetC_like |
cd18568 |
Six-transmembrane helical domain (6-TMD) of the ABC subunit of T1SS-like HetC and similar ... |
1021-1279 |
1.73e-03 |
|
Six-transmembrane helical domain (6-TMD) of the ABC subunit of T1SS-like HetC and similar proteins; This group represents the six-transmembrane helical domain (6-TMD) of the ABC subunit of T1SS (type 1 secretion systems), such as heterocyst differentiation protein HetC. HetC is similar to ABC protein exporters of T1SS (type 1 secretion systems) and is involved in early regulation of heterocyst differentiation in the filamentous cynobacterium Anabaena sp. T1SS are found in pathogenic Gram-negative bacteria (such as Escherichia coli, Vibrio cholerae or Bordetella pertussis) to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. ABC-transporter proteins in this group carry a proteolytic peptidase domain in their N-termini, termed as C39, which cleaves a double glycine (GG) motif-containing signal peptide from substrates before secretion.
Pssm-ID: 350012 [Multi-domain] Cd Length: 294 Bit Score: 42.16 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1021 VANDTGLRDMYLGVYGAFGFGQVATNFFSSLAISlgclKCSQLLHQTLL--YYN--LRWPMELFDTTPLGRIVNRFSKDi 1096
Cdd:cd18568 34 VHKNISLLNLILIGLLIVGIFQILLSAVRQYLLD----YFANRIDLSLLsdFYKhlLSLPLSFFASRKVGDIITRFQEN- 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1097 DTIDNVLPFNIRVVIGQAYMV---LATIVVISLS-TPIFLAVIVPIAFLYYFAQRFYVATSRQLMRLESVSrspiYSHFS 1172
Cdd:cd18568 109 QKIRRFLTRSALTTILDLLMVfiyLGLMFYYNLQlTLIVLAFIPLYVLLTLLSSPKLKRNSREIFQANAEQ----QSFLV 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1173 ETVTGASTIRAYNVGDRFIEESDAKVDKNQVCKYPSVIanrwLAIRLEMVGNLI-------ILFASLFAVLGGQTNPG-L 1244
Cdd:cd18568 185 EALTGIATIKALAAERPIRWRWENKFAKALNTRFRGQK----LSIVLQLISSLInhlgtiaVLWYGAYLVISGQLTIGqL 260
|
250 260 270
....*....|....*....|....*....|....*
gi 939619619 1245 VGLSVSYALqVTQTLNWLVRMSSDIETNIVSVERI 1279
Cdd:cd18568 261 VAFNMLFGS-VINPLLALVGLWDELQETRISVERL 294
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
772-838 |
2.91e-03 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 42.15 E-value: 2.91e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 939619619 772 SGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVgkhifeeVIGPKGILAR--KSRVLVTHGVTFLPQV 838
Cdd:PLN03073 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLHA-------VLWLETYLLKwpKTFIVVSHAREFLNTV 407
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
1445-1475 |
3.15e-03 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 41.70 E-value: 3.15e-03
10 20 30
....*....|....*....|....*....|.
gi 939619619 1445 NLSVGQRQLVCLARALLRKTKVLVLDEATAA 1475
Cdd:NF040905 139 DIGVGKQQLVEIAKALSKDVKLLILDEPTAA 169
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
772-804 |
3.19e-03 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 40.88 E-value: 3.19e-03
10 20 30
....*....|....*....|....*....|...
gi 939619619 772 SGGQKQRISLARAVYSDADLYLLDDPLSAVDAH 804
Cdd:COG4778 154 SGGEQQRVNIARGFIADPPLLLLDEPTASLDAA 186
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
1309-1477 |
4.32e-03 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 40.92 E-value: 4.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1309 VEFQNFQVRYREGLDL---VLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMG----LHM 1381
Cdd:PRK13646 3 IRFDNVSYTYQKGTPYehqAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTkdkyIRP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 1382 LRSRLTIIPQDP--VLFSGSL--RINLDPFEIKTDDEIWKAlelshlKSFVKSLAAGLNHEIAEGGE-NLSVGQRQLVCL 1456
Cdd:PRK13646 83 VRKRIGMVFQFPesQLFEDTVerEIIFGPKNFKMNLDEVKN------YAHRLLMDLGFSRDVMSQSPfQMSGGQMRKIAI 156
|
170 180
....*....|....*....|.
gi 939619619 1457 ARALLRKTKVLVLDEATAAVD 1477
Cdd:PRK13646 157 VSILAMNPDIIVLDEPTAGLD 177
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
771-802 |
4.90e-03 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 40.22 E-value: 4.90e-03
10 20 30
....*....|....*....|....*....|..
gi 939619619 771 LSGGQKQRISLARAVYSDADLYLLDDPLSAVD 802
Cdd:PRK13543 138 LSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
771-860 |
5.72e-03 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 40.50 E-value: 5.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 771 LSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEEVIGpkgiLARK---SRVLVTHGVTFLPQV-DSIYVIKM 846
Cdd:PRK11022 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLE----LQQKenmALVLITHDLALVAEAaHKIIVMYA 229
|
90
....*....|....
gi 939619619 847 GEISESGTFDQLVK 860
Cdd:PRK11022 230 GQVVETGKAHDIFR 243
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
1316-1376 |
8.19e-03 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 40.88 E-value: 8.19e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 939619619 1316 VRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLtLALF---RIIEAagGRISIDGVDIAS 1376
Cdd:NF033858 7 VSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSL-LSLIagaRKIQQ--GRVEVLGGDMAD 67
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
771-846 |
9.34e-03 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 38.49 E-value: 9.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 939619619 771 LSGGQKQRISLARAV----YSDADLYLLDDPLSAVDAHVGkHIFEEVIgpKGILARKSRVLVThgvTFLPQV----DSIY 842
Cdd:cd03227 78 LSGGEKELSALALILalasLKPRPLYILDEIDRGLDPRDG-QALAEAI--LEHLVKGAQVIVI---THLPELaelaDKLI 151
|
....
gi 939619619 843 VIKM 846
Cdd:cd03227 152 HIKK 155
|
|
| |
