NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|943463927|ref|NP_001303800|]
View 

MKRN2 opposite strand protein-like C-terminal domain-containing protein [Caenorhabditis elegans]

Protein Classification

MKRN2 opposite strand family protein( domain architecture ID 582583)

MKRN2 opposite strand protein (MKRN2OS) is a DUF4796 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4796 super family cl24569
Domain of unknown function (DUF4796); This family of proteins is functionally uncharacterized. ...
 10-70 1.18e-14

Domain of unknown function (DUF4796); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 194 and 289 amino acids in length. There is a single completely conserved residue C that may be functionally important.


The actual alignment was detected with superfamily member pfam16044:

Pssm-ID: 464991  Cd Length: 189  Bit Score: 64.55  E-value: 1.18e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 943463927   10 KMKKFDKSKYMENDWNCFDFVMEYMKFTNYRNYR---SKIDFLEEFVTKKLENVVKYCMLFEKL 70
Cdd:pfam16044 126 TSDMWSSERYEEESHNCYTFVLTFLNALLYAELSsalSKEDFCEKFILPRTKRAAKYISLYRKI 189
 
Name Accession Description Interval E-value
DUF4796 pfam16044
Domain of unknown function (DUF4796); This family of proteins is functionally uncharacterized. ...
 10-70 1.18e-14

Domain of unknown function (DUF4796); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 194 and 289 amino acids in length. There is a single completely conserved residue C that may be functionally important.


Pssm-ID: 464991  Cd Length: 189  Bit Score: 64.55  E-value: 1.18e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 943463927   10 KMKKFDKSKYMENDWNCFDFVMEYMKFTNYRNYR---SKIDFLEEFVTKKLENVVKYCMLFEKL 70
Cdd:pfam16044 126 TSDMWSSERYEEESHNCYTFVLTFLNALLYAELSsalSKEDFCEKFILPRTKRAAKYISLYRKI 189
 
Name Accession Description Interval E-value
DUF4796 pfam16044
Domain of unknown function (DUF4796); This family of proteins is functionally uncharacterized. ...
 10-70 1.18e-14

Domain of unknown function (DUF4796); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 194 and 289 amino acids in length. There is a single completely conserved residue C that may be functionally important.


Pssm-ID: 464991  Cd Length: 189  Bit Score: 64.55  E-value: 1.18e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 943463927   10 KMKKFDKSKYMENDWNCFDFVMEYMKFTNYRNYR---SKIDFLEEFVTKKLENVVKYCMLFEKL 70
Cdd:pfam16044 126 TSDMWSSERYEEESHNCYTFVLTFLNALLYAELSsalSKEDFCEKFILPRTKRAAKYISLYRKI 189
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH