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Conserved domains on  [gi|1017384733|ref|NP_001309502|]
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Activated in Blocked Unfolded protein response [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 25-138 1.58e-05

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 1.58e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017384733   25 LPAQLGGEPVGVAAQAQGAPlfvqTADQKPPAVAAPQLPN--AVPVAPQAAVTPAPFTFPTLPTVAPFTLPSHPTLAPFT 102
Cdd:PHA03247  2735 LPAAPAPPAVPAGPATPGGP----ARPARPPTTAGPPAPAppAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAA 2810

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1017384733  103 LPTHAPFTFPTHPPL-VFPPPSTPAPFVPPSPYAFVP 138
Cdd:PHA03247  2811 VLAPAAALPPAASPAgPLPPPTSAQPTAPPPPPGPPP 2847
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 25-138 1.58e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 1.58e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017384733   25 LPAQLGGEPVGVAAQAQGAPlfvqTADQKPPAVAAPQLPN--AVPVAPQAAVTPAPFTFPTLPTVAPFTLPSHPTLAPFT 102
Cdd:PHA03247  2735 LPAAPAPPAVPAGPATPGGP----ARPARPPTTAGPPAPAppAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAA 2810

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1017384733  103 LPTHAPFTFPTHPPL-VFPPPSTPAPFVPPSPYAFVP 138
Cdd:PHA03247  2811 VLAPAAALPPAASPAgPLPPPTSAQPTAPPPPPGPPP 2847
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 39-133 7.52e-04

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 42.45  E-value: 7.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017384733  39 QAQGAPLFVQTadQKPPAVAAPQLPNAVPVAPQAAVTPAPFTFPTLPTVAPFTLPSH--PTLAPFTL----PTHAPFTFP 112
Cdd:pfam03154 166 ILQTQPPVLQA--QSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQtqSTAAPHTLiqqtPTLHPQRLP 243

                          90       100
                  ....*....|....*....|..
gi 1017384733 113 T-HPPLVFPPPSTPAPFVPPSP 133
Cdd:pfam03154 244 SpHPPLQPMTQPPPPSQVSPQP 265
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
3-94 1.48e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 41.14  E-value: 1.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017384733   3 LLIALLPSVALAQNTFQNTIFDLPAQLGGEPVGVAAQAQGAPLF-VQTADQKPPAVAAPQLPNAVPVAPqAAVTPAPFTF 81
Cdd:COG5373    11 LVLALLVGLLGRVARLRRRVEELEAELAEAAEAASAPAEPEPEAaAAATAAAPEAAPAPVPEAPAAPPA-AAEAPAPAAA 89

                          90
                  ....*....|...
gi 1017384733  82 PTLPTVAPFTLPS 94
Cdd:COG5373    90 APPAEAEPAAAPA 102
KLF1_N cd21581
N-terminal domain of Kruppel-like Factor 1; Kruppel-like Factor 1 (KLF1, also known as ...
 63-138 2.35e-03

N-terminal domain of Kruppel-like Factor 1; Kruppel-like Factor 1 (KLF1, also known as Krueppel-like factor 1 or Erythroid Kruppel-like Factor/EKLF) was the first Kruppel-like factor discovered. It was found to be vitally important for embryonic erythropoiesis in promoting the switch from fetal hemoglobin (Hemoglobin F) to adult hemoglobin (Hemoglobin A) gene expression by binding to highly conserved CACCC domains. EKLF ablation in mouse embryos produces a lethal anemic phenotype, causing death by embryonic day 14, and natural mutations lead to beta+ thalassemia in humans. However, expression of embryonic hemoglobin and fetal hemoglobin genes is normal in EKLF-deficient mice, suggesting other factors may be involved. KLF1 functions as a transcriptional activator. It belongs to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specifity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the N-terminal domain of KLF1, which is related to the N-terminal domains of KLF2 and KLF4.


Pssm-ID: 409227 [Multi-domain]  Cd Length: 278  Bit Score: 40.03  E-value: 2.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017384733  63 PNAVPVAPQAAVT---PAPFTFPTLPTVAPFTLPS------HPTLAPFTLPTHAPFTFPTHPPLVFPPPS-------TPA 126
Cdd:cd21581   131 TGWAPPEPHHGYPdafVGPALFPAPANVDQFGFPQggsvdrRGNLSKSGSWDFGSYYPQQHPSVVAFPDSrfgplsgPQA 210

                          90
                  ....*....|..
gi 1017384733 127 PFVPPSPYAFVP 138
Cdd:cd21581   211 LTPDPQHYGYFQ 222
half-pint TIGR01645
poly-U binding splicing factor, half-pint family; The proteins represented by this model ...
 6-133 3.98e-03

poly-U binding splicing factor, half-pint family; The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.


Pssm-ID: 130706 [Multi-domain]  Cd Length: 612  Bit Score: 39.67  E-value: 3.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017384733   6 ALLPSVALAQNTFQNTIFDLPAQLGGEPVGVAAQAQGAPLFVQTADQKPPAVAAP--QLPNAVPVAPQAA---VTPAPFT 80
Cdd:TIGR01645 296 AIPAAAAVAAAAATAKIMAAEAVAGAAVLGPRAQSPATPSSSLPTDIGNKAVVSSakKEAEEVPPLPQAApavVKPGPME 375

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1017384733  81 FPTlpTVAPFTLPSHPTLAPFTL--PTHAPFTFPTHPPLVFPPPSTPAPFVPPSP 133
Cdd:TIGR01645 376 IPT--PVPPPGLAIPSLVAPPGLvaPTEINPSFLASPRKKMKREKLPVTFGALDD 428
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 25-138 1.58e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 1.58e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017384733   25 LPAQLGGEPVGVAAQAQGAPlfvqTADQKPPAVAAPQLPN--AVPVAPQAAVTPAPFTFPTLPTVAPFTLPSHPTLAPFT 102
Cdd:PHA03247  2735 LPAAPAPPAVPAGPATPGGP----ARPARPPTTAGPPAPAppAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAA 2810

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1017384733  103 LPTHAPFTFPTHPPL-VFPPPSTPAPFVPPSPYAFVP 138
Cdd:PHA03247  2811 VLAPAAALPPAASPAgPLPPPTSAQPTAPPPPPGPPP 2847
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
26-135 5.62e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.56  E-value: 5.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017384733  26 PAQLGGEPVGVAAQAQGAPLFVQTADQKPPAVAAPQLPNAVPVAPQAAV----TPAPFTFPTLPTVAPFTLPSHPTLAPF 101
Cdd:PRK12323  374 PATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAparrSPAPEALAAARQASARGPGGAPAPAPA 453

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1017384733 102 TLPTHAPFTFPTHPPLVFPPPSTPAPFVPPSPYA 135
Cdd:PRK12323  454 PAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAA 487
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 39-133 7.52e-04

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 42.45  E-value: 7.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017384733  39 QAQGAPLFVQTadQKPPAVAAPQLPNAVPVAPQAAVTPAPFTFPTLPTVAPFTLPSH--PTLAPFTL----PTHAPFTFP 112
Cdd:pfam03154 166 ILQTQPPVLQA--QSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQtqSTAAPHTLiqqtPTLHPQRLP 243

                          90       100
                  ....*....|....*....|..
gi 1017384733 113 T-HPPLVFPPPSTPAPFVPPSP 133
Cdd:pfam03154 244 SpHPPLQPMTQPPPPSQVSPQP 265
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
25-133 9.80e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 41.68  E-value: 9.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017384733  25 LPAQLGGEPVGVAAQAQGAPLFVQTADQKPPAVAApqlpNAVPVAPQAAVTPAPFTFPTLPTVAPftlpshptlAPFTLP 104
Cdd:PRK14971  362 LTQKGDDASGGRGPKQHIKPVFTQPAAAPQPSAAA----AASPSPSQSSAAAQPSAPQSATQPAG---------TPPTVS 428

                          90       100
                  ....*....|....*....|....*....
gi 1017384733 105 THAPFTFPTHPPLVFPPPSTPAPFVPPSP 133
Cdd:PRK14971  429 VDPPAAVPVNPPSTAPQAVRPAQFKEEKK 457
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
3-94 1.48e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 41.14  E-value: 1.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017384733   3 LLIALLPSVALAQNTFQNTIFDLPAQLGGEPVGVAAQAQGAPLF-VQTADQKPPAVAAPQLPNAVPVAPqAAVTPAPFTF 81
Cdd:COG5373    11 LVLALLVGLLGRVARLRRRVEELEAELAEAAEAASAPAEPEPEAaAAATAAAPEAAPAPVPEAPAAPPA-AAEAPAPAAA 89

                          90
                  ....*....|...
gi 1017384733  82 PTLPTVAPFTLPS 94
Cdd:COG5373    90 APPAEAEPAAAPA 102
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 26-133 1.69e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.12  E-value: 1.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017384733  26 PAQLGGEPVGVAAQAQGAPLFVQTADQKPPAVAAPQlPNAVPVAPQAAVTPAPFTFPTLPTVAPFTLPSHPTLAPFTLPT 105
Cdd:PRK07764  399 PSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPA-PAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPT 477

                          90       100
                  ....*....|....*....|....*...
gi 1017384733 106 HAPFTFPTHPPLVFPPPSTPAPFVPPSP 133
Cdd:PRK07764  478 AAPAPAPPAAPAPAAAPAAPAAPAAPAG 505
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 26-133 1.84e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.12  E-value: 1.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017384733  26 PAQLGGEPVGVAAQAQGAPlfVQTADQKPPAVAAPQLPNAVPVAPQAAVTPAPFTFPTLPtvapftLPSHPTLAPFTLPT 105
Cdd:PRK07764  683 PAPAPAAPAAPAGAAPAQP--APAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVP------LPPEPDDPPDPAGA 754

                          90       100
                  ....*....|....*....|....*...
gi 1017384733 106 HAPFTFPTHPPLVFPPPSTPAPFVPPSP 133
Cdd:PRK07764  755 PAQPPPPPAPAPAAAPAAAPPPSPPSEE 782
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
9-138 2.31e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.63  E-value: 2.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017384733   9 PSVALAQNTFQNTIFDLPAQLGGEPVGVAAQAQGAPLFVQTADQKPPAVAAPQLPNAVPVAPQAAVTPAPFTFPTLPTVA 88
Cdd:PRK12323  341 SELALAPDEYAGFTMTLLRMLAFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVA 420

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1017384733  89 PFTLPSHPTLAPFTLPTHAPFTFPTHPPLVFP-PPSTPAPFVPPSPYAFVP 138
Cdd:PRK12323  421 AAPARRSPAPEALAAARQASARGPGGAPAPAPaPAAAPAAAARPAAAGPRP 471
KLF1_N cd21581
N-terminal domain of Kruppel-like Factor 1; Kruppel-like Factor 1 (KLF1, also known as ...
 63-138 2.35e-03

N-terminal domain of Kruppel-like Factor 1; Kruppel-like Factor 1 (KLF1, also known as Krueppel-like factor 1 or Erythroid Kruppel-like Factor/EKLF) was the first Kruppel-like factor discovered. It was found to be vitally important for embryonic erythropoiesis in promoting the switch from fetal hemoglobin (Hemoglobin F) to adult hemoglobin (Hemoglobin A) gene expression by binding to highly conserved CACCC domains. EKLF ablation in mouse embryos produces a lethal anemic phenotype, causing death by embryonic day 14, and natural mutations lead to beta+ thalassemia in humans. However, expression of embryonic hemoglobin and fetal hemoglobin genes is normal in EKLF-deficient mice, suggesting other factors may be involved. KLF1 functions as a transcriptional activator. It belongs to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specifity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the N-terminal domain of KLF1, which is related to the N-terminal domains of KLF2 and KLF4.


Pssm-ID: 409227 [Multi-domain]  Cd Length: 278  Bit Score: 40.03  E-value: 2.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017384733  63 PNAVPVAPQAAVT---PAPFTFPTLPTVAPFTLPS------HPTLAPFTLPTHAPFTFPTHPPLVFPPPS-------TPA 126
Cdd:cd21581   131 TGWAPPEPHHGYPdafVGPALFPAPANVDQFGFPQggsvdrRGNLSKSGSWDFGSYYPQQHPSVVAFPDSrfgplsgPQA 210

                          90
                  ....*....|..
gi 1017384733 127 PFVPPSPYAFVP 138
Cdd:cd21581   211 LTPDPQHYGYFQ 222
half-pint TIGR01645
poly-U binding splicing factor, half-pint family; The proteins represented by this model ...
 6-133 3.98e-03

poly-U binding splicing factor, half-pint family; The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.


Pssm-ID: 130706 [Multi-domain]  Cd Length: 612  Bit Score: 39.67  E-value: 3.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017384733   6 ALLPSVALAQNTFQNTIFDLPAQLGGEPVGVAAQAQGAPLFVQTADQKPPAVAAP--QLPNAVPVAPQAA---VTPAPFT 80
Cdd:TIGR01645 296 AIPAAAAVAAAAATAKIMAAEAVAGAAVLGPRAQSPATPSSSLPTDIGNKAVVSSakKEAEEVPPLPQAApavVKPGPME 375

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1017384733  81 FPTlpTVAPFTLPSHPTLAPFTL--PTHAPFTFPTHPPLVFPPPSTPAPFVPPSP 133
Cdd:TIGR01645 376 IPT--PVPPPGLAIPSLVAPPGLvaPTEINPSFLASPRKKMKREKLPVTFGALDD 428
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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