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Conserved domains on  [gi|1017366810|ref|NP_001309507|]
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Receptor L-domain domain-containing protein [Caenorhabditis elegans]

Protein Classification

Recep_L_domain domain-containing protein( domain architecture ID 10287037)

Recep_L_domain domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Recep_L_domain pfam01030
Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. ...
 361-467 5.38e-21

Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. Each L domain consists of a single-stranded right hand beta-helix. This Pfam entry is missing the first 50 amino acid residues of the domain.


:

Pssm-ID: 460032  Cd Length: 112  Bit Score: 88.06  E-value: 5.38e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017366810 361 NCTVISGDLKIESGDE----EYVSKLESLKYLFGSILIHNTGFSKNRYSPNLSCIA---VMNDEPAIKIVSNLNLTYAFL 433
Cdd:pfam01030   1 NCTVIYGNLEITLIDEnndsELLSFLSNVEEITGYLLIANTNLVSLSFLPNLRIIRgrnLFDDNYALYILDNPNLTELGL 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1017366810 434 PKIENIITkhqRTVVVHNNPQL-SSEFYFLYPMSY 467
Cdd:pfam01030  81 PSLKEITS---GGVYIHNNPKLcYTETEILWKLLL 112
Recep_L_domain super family cl08303
Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. ...
 208-315 2.92e-07

Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. Each L domain consists of a single-stranded right hand beta-helix. This Pfam entry is missing the first 50 amino acid residues of the domain.


The actual alignment was detected with superfamily member pfam01030:

Pssm-ID: 460032  Cd Length: 112  Bit Score: 48.77  E-value: 2.92e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017366810 208 LNLTNVADTSYQLIPLGNTIHVRGDFEIQRTNLTNLAFFPILESVISINGPRNQKILmNIHDNPNMTTLGLPKLNFLydn 287
Cdd:pfam01030  11 ITLIDENNDSELLSFLSNVEEITGYLLIANTNLVSLSFLPNLRIIRGRNLFDDNYAL-YILDNPNLTELGLPSLKEI--- 86

                          90       100
                  ....*....|....*....|....*...
gi 1017366810 288 LAGGqfVANFENlhPDFCVTYGEMFLFM 315
Cdd:pfam01030  87 TSGG--VYIHNN--PKLCYTETEILWKL 110
Recep_L_domain super family cl08303
Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. ...
 53-131 9.07e-06

Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. Each L domain consists of a single-stranded right hand beta-helix. This Pfam entry is missing the first 50 amino acid residues of the domain.


The actual alignment was detected with superfamily member pfam01030:

Pssm-ID: 460032  Cd Length: 112  Bit Score: 44.53  E-value: 9.07e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1017366810  53 NCSEICGILVLNSNTDLSHSQLQVLFSNMTQLSGALRVENTSFTNLSFFNEGRVNRVTEYFCKAYGISIVNNSQLTDVS 131
Cdd:pfam01030   1 NCTVIYGNLEITLIDENNDSELLSFLSNVEEITGYLLIANTNLVSLSFLPNLRIIRGRNLFDDNYALYILDNPNLTELG 79
 
Name Accession Description Interval E-value
Recep_L_domain pfam01030
Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. ...
 361-467 5.38e-21

Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. Each L domain consists of a single-stranded right hand beta-helix. This Pfam entry is missing the first 50 amino acid residues of the domain.


Pssm-ID: 460032  Cd Length: 112  Bit Score: 88.06  E-value: 5.38e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017366810 361 NCTVISGDLKIESGDE----EYVSKLESLKYLFGSILIHNTGFSKNRYSPNLSCIA---VMNDEPAIKIVSNLNLTYAFL 433
Cdd:pfam01030   1 NCTVIYGNLEITLIDEnndsELLSFLSNVEEITGYLLIANTNLVSLSFLPNLRIIRgrnLFDDNYALYILDNPNLTELGL 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1017366810 434 PKIENIITkhqRTVVVHNNPQL-SSEFYFLYPMSY 467
Cdd:pfam01030  81 PSLKEITS---GGVYIHNNPKLcYTETEILWKLLL 112
Recep_L_domain pfam01030
Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. ...
 208-315 2.92e-07

Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. Each L domain consists of a single-stranded right hand beta-helix. This Pfam entry is missing the first 50 amino acid residues of the domain.


Pssm-ID: 460032  Cd Length: 112  Bit Score: 48.77  E-value: 2.92e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017366810 208 LNLTNVADTSYQLIPLGNTIHVRGDFEIQRTNLTNLAFFPILESVISINGPRNQKILmNIHDNPNMTTLGLPKLNFLydn 287
Cdd:pfam01030  11 ITLIDENNDSELLSFLSNVEEITGYLLIANTNLVSLSFLPNLRIIRGRNLFDDNYAL-YILDNPNLTELGLPSLKEI--- 86

                          90       100
                  ....*....|....*....|....*...
gi 1017366810 288 LAGGqfVANFENlhPDFCVTYGEMFLFM 315
Cdd:pfam01030  87 TSGG--VYIHNN--PKLCYTETEILWKL 110
Recep_L_domain pfam01030
Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. ...
 53-131 9.07e-06

Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. Each L domain consists of a single-stranded right hand beta-helix. This Pfam entry is missing the first 50 amino acid residues of the domain.


Pssm-ID: 460032  Cd Length: 112  Bit Score: 44.53  E-value: 9.07e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1017366810  53 NCSEICGILVLNSNTDLSHSQLQVLFSNMTQLSGALRVENTSFTNLSFFNEGRVNRVTEYFCKAYGISIVNNSQLTDVS 131
Cdd:pfam01030   1 NCTVIYGNLEITLIDENNDSELLSFLSNVEEITGYLLIANTNLVSLSFLPNLRIIRGRNLFDDNYALYILDNPNLTELG 79
 
Name Accession Description Interval E-value
Recep_L_domain pfam01030
Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. ...
 361-467 5.38e-21

Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. Each L domain consists of a single-stranded right hand beta-helix. This Pfam entry is missing the first 50 amino acid residues of the domain.


Pssm-ID: 460032  Cd Length: 112  Bit Score: 88.06  E-value: 5.38e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017366810 361 NCTVISGDLKIESGDE----EYVSKLESLKYLFGSILIHNTGFSKNRYSPNLSCIA---VMNDEPAIKIVSNLNLTYAFL 433
Cdd:pfam01030   1 NCTVIYGNLEITLIDEnndsELLSFLSNVEEITGYLLIANTNLVSLSFLPNLRIIRgrnLFDDNYALYILDNPNLTELGL 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1017366810 434 PKIENIITkhqRTVVVHNNPQL-SSEFYFLYPMSY 467
Cdd:pfam01030  81 PSLKEITS---GGVYIHNNPKLcYTETEILWKLLL 112
Recep_L_domain pfam01030
Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. ...
 208-315 2.92e-07

Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. Each L domain consists of a single-stranded right hand beta-helix. This Pfam entry is missing the first 50 amino acid residues of the domain.


Pssm-ID: 460032  Cd Length: 112  Bit Score: 48.77  E-value: 2.92e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017366810 208 LNLTNVADTSYQLIPLGNTIHVRGDFEIQRTNLTNLAFFPILESVISINGPRNQKILmNIHDNPNMTTLGLPKLNFLydn 287
Cdd:pfam01030  11 ITLIDENNDSELLSFLSNVEEITGYLLIANTNLVSLSFLPNLRIIRGRNLFDDNYAL-YILDNPNLTELGLPSLKEI--- 86

                          90       100
                  ....*....|....*....|....*...
gi 1017366810 288 LAGGqfVANFENlhPDFCVTYGEMFLFM 315
Cdd:pfam01030  87 TSGG--VYIHNN--PKLCYTETEILWKL 110
Recep_L_domain pfam01030
Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. ...
 53-131 9.07e-06

Receptor L domain; The L domains from these receptors make up the bilobal ligand binding site. Each L domain consists of a single-stranded right hand beta-helix. This Pfam entry is missing the first 50 amino acid residues of the domain.


Pssm-ID: 460032  Cd Length: 112  Bit Score: 44.53  E-value: 9.07e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1017366810  53 NCSEICGILVLNSNTDLSHSQLQVLFSNMTQLSGALRVENTSFTNLSFFNEGRVNRVTEYFCKAYGISIVNNSQLTDVS 131
Cdd:pfam01030   1 NCTVIYGNLEITLIDENNDSELLSFLSNVEEITGYLLIANTNLVSLSFLPNLRIIRGRNLFDDNYALYILDNPNLTELG 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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