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Conserved domains on  [gi|1017353480|ref|NP_001309529|]
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GlycosylPhosphatidylinositol Anchor Attachment 1 homolog [Caenorhabditis elegans]

Protein Classification

zinc-binding metallopeptidase family protein( domain architecture ID 56613)

zinc-binding metallopeptidase family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Gaa1 super family cl47869
Gaa1-like, GPI transamidase component; GPI (glycosyl phosphatidyl inositol) transamidase is a ...
 1-125 1.04e-28

Gaa1-like, GPI transamidase component; GPI (glycosyl phosphatidyl inositol) transamidase is a multi-protein complex. Gpi16, Gpi8 and Gaa1 for a sub-complex of the GPI transamidase. GPI transamidase that adds glycosylphosphatidylinositols (GPIs) to newly synthesized proteins.


The actual alignment was detected with superfamily member pfam04114:

Pssm-ID: 461181  Cd Length: 496  Bit Score: 110.44  E-value: 1.04e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017353480   1 MRIVCLLETSLVLYGICLTNFGLAILCTAFVVPIVFL--MTYESSDRTRSIFRSSVLAILNPISVLAFVAINIPGMFGQL 78
Cdd:pfam04114 373 LKSFSLLYLGLFLSCLALLNFSLAFLVALLAVPLTFIarPTAESSRRLLRILRSLLLLLLSPLVVLYLVLLYLFPELEEL 452

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1017353480  79 FptISQDSWLAAAQSIALTAIREDVeFKVNHFFLLCCFGYPIWNMLF 125
Cdd:pfam04114 453 P--LLYRSWQAALQALTQAAFDWVI-YGSWTFFVVWLVWWPAWLLGW 496
 
Name Accession Description Interval E-value
Gaa1 pfam04114
Gaa1-like, GPI transamidase component; GPI (glycosyl phosphatidyl inositol) transamidase is a ...
 1-125 1.04e-28

Gaa1-like, GPI transamidase component; GPI (glycosyl phosphatidyl inositol) transamidase is a multi-protein complex. Gpi16, Gpi8 and Gaa1 for a sub-complex of the GPI transamidase. GPI transamidase that adds glycosylphosphatidylinositols (GPIs) to newly synthesized proteins.


Pssm-ID: 461181  Cd Length: 496  Bit Score: 110.44  E-value: 1.04e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017353480   1 MRIVCLLETSLVLYGICLTNFGLAILCTAFVVPIVFL--MTYESSDRTRSIFRSSVLAILNPISVLAFVAINIPGMFGQL 78
Cdd:pfam04114 373 LKSFSLLYLGLFLSCLALLNFSLAFLVALLAVPLTFIarPTAESSRRLLRILRSLLLLLLSPLVVLYLVLLYLFPELEEL 452

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1017353480  79 FptISQDSWLAAAQSIALTAIREDVeFKVNHFFLLCCFGYPIWNMLF 125
Cdd:pfam04114 453 P--LLYRSWQAALQALTQAAFDWVI-YGSWTFFVVWLVWWPAWLLGW 496
 
Name Accession Description Interval E-value
Gaa1 pfam04114
Gaa1-like, GPI transamidase component; GPI (glycosyl phosphatidyl inositol) transamidase is a ...
 1-125 1.04e-28

Gaa1-like, GPI transamidase component; GPI (glycosyl phosphatidyl inositol) transamidase is a multi-protein complex. Gpi16, Gpi8 and Gaa1 for a sub-complex of the GPI transamidase. GPI transamidase that adds glycosylphosphatidylinositols (GPIs) to newly synthesized proteins.


Pssm-ID: 461181  Cd Length: 496  Bit Score: 110.44  E-value: 1.04e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1017353480   1 MRIVCLLETSLVLYGICLTNFGLAILCTAFVVPIVFL--MTYESSDRTRSIFRSSVLAILNPISVLAFVAINIPGMFGQL 78
Cdd:pfam04114 373 LKSFSLLYLGLFLSCLALLNFSLAFLVALLAVPLTFIarPTAESSRRLLRILRSLLLLLLSPLVVLYLVLLYLFPELEEL 452

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1017353480  79 FptISQDSWLAAAQSIALTAIREDVeFKVNHFFLLCCFGYPIWNMLF 125
Cdd:pfam04114 453 P--LLYRSWQAALQALTQAAFDWVI-YGSWTFFVVWLVWWPAWLLGW 496
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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