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Conserved domains on  [gi|1020738777|ref|NP_001310314|]
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dematin isoform 2 [Homo sapiens]

Protein Classification

actin-binding LIM protein; villin family protein( domain architecture ID 11241350)

actin-binding LIM protein (abLIM) may act as a scaffold protein for signaling modules of the actin cytoskeleton| villin family protein similar to Oryza sativa villin-4, a Ca(2+)-regulated actin-binding protein involved in actin filament bundling, severing and capping

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AbLIM_anchor pfam16182
Putative adherens-junction anchoring region of AbLIM; AbLIM_anchor is a domain lying between ...
 8-333 3.88e-86

Putative adherens-junction anchoring region of AbLIM; AbLIM_anchor is a domain lying between the LIM actin-binding and the vilin-head domain of actin-binding LIM proteins. It is likely that this domain is involved in anchoring abLIMs to circumferential actin bundles in specific cell types.


:

Pssm-ID: 465046 [Multi-domain]  Cd Length: 319  Bit Score: 263.95  E-value: 3.88e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1020738777   8 PLTSPGSVSPSRDSSVPGSPSS-IVAKMDNQVLGYKDLAAIPKDKAILDIERPDLMIYEPHFTYSLLEhvELPRSRERSL 86
Cdd:pfam16182   1 TRTSSESIISPPGSSISGSPSRvIYAKLDNEILDYKDLAALPKVKAIYDIERPDLISYEPYVSYSSDD--RLERQSYGES 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1020738777  87 SPKSTSPPPSP-----EVWADSRSPGIISQASAPRTTGTPRTS--LPHFHHPET-------------------------- 133
Cdd:pfam16182  79 LSTLSPSSEDSydsreLRQRRSSSPGSIGSPTYSRHGYTPTLSrsPQHFHRPGSesgrsspslsqpsdrkspptyvqapk 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1020738777 134 ------SRPDSNIYKKPPIYKQRESVGGSPQTkhliEDLIIESSKFPAAqppdpnqpakietdywpcppslAVVETEWRk 207
Cdd:pfam16182 159 hfhvpdTGVKDNIYRKPPIYKQHGTSASASQS----SEDIIHSSRFPAS----------------------GGEEEGWN- 211

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1020738777 208 rkasrrgaeeeeeeedddsgeemkaLRERQREELSKVTSNLGKMILKEEME-KSLPIRRKTRSLPDRTPFHTSL-HQGTS 285
Cdd:pfam16182 212 -------------------------RRLLQEEELSKIQSGLGKLILKEEMEaRSGSERRDPWSSPRSSPSGSSGsDSPYS 266

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1020738777 286 KSSSLPAYGRTTLSRLQSTEFSPSGSETGSPG-----LQIYPYEMLVVTNKGR 333
Cdd:pfam16182 267 KSASLPGYGRNGLHRPQSADFFQYGSDGDVSWggmreYKIYPYEMLAVTNRGR 319
VHP smart00153
Villin headpiece domain;
348-383 1.12e-14

Villin headpiece domain;


:

Pssm-ID: 128458  Cd Length: 36  Bit Score: 67.34  E-value: 1.12e-14
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1020738777  348 HLSAEDFSRVFAMSPEEFGKLALWKRNELKKKASLF 383
Cdd:smart00153   1 YLSDEDFEEVFGMTREEFYKLPLWKQNQLKKKKGLF 36
 
Name Accession Description Interval E-value
AbLIM_anchor pfam16182
Putative adherens-junction anchoring region of AbLIM; AbLIM_anchor is a domain lying between ...
 8-333 3.88e-86

Putative adherens-junction anchoring region of AbLIM; AbLIM_anchor is a domain lying between the LIM actin-binding and the vilin-head domain of actin-binding LIM proteins. It is likely that this domain is involved in anchoring abLIMs to circumferential actin bundles in specific cell types.


Pssm-ID: 465046 [Multi-domain]  Cd Length: 319  Bit Score: 263.95  E-value: 3.88e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1020738777   8 PLTSPGSVSPSRDSSVPGSPSS-IVAKMDNQVLGYKDLAAIPKDKAILDIERPDLMIYEPHFTYSLLEhvELPRSRERSL 86
Cdd:pfam16182   1 TRTSSESIISPPGSSISGSPSRvIYAKLDNEILDYKDLAALPKVKAIYDIERPDLISYEPYVSYSSDD--RLERQSYGES 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1020738777  87 SPKSTSPPPSP-----EVWADSRSPGIISQASAPRTTGTPRTS--LPHFHHPET-------------------------- 133
Cdd:pfam16182  79 LSTLSPSSEDSydsreLRQRRSSSPGSIGSPTYSRHGYTPTLSrsPQHFHRPGSesgrsspslsqpsdrkspptyvqapk 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1020738777 134 ------SRPDSNIYKKPPIYKQRESVGGSPQTkhliEDLIIESSKFPAAqppdpnqpakietdywpcppslAVVETEWRk 207
Cdd:pfam16182 159 hfhvpdTGVKDNIYRKPPIYKQHGTSASASQS----SEDIIHSSRFPAS----------------------GGEEEGWN- 211

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1020738777 208 rkasrrgaeeeeeeedddsgeemkaLRERQREELSKVTSNLGKMILKEEME-KSLPIRRKTRSLPDRTPFHTSL-HQGTS 285
Cdd:pfam16182 212 -------------------------RRLLQEEELSKIQSGLGKLILKEEMEaRSGSERRDPWSSPRSSPSGSSGsDSPYS 266

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1020738777 286 KSSSLPAYGRTTLSRLQSTEFSPSGSETGSPG-----LQIYPYEMLVVTNKGR 333
Cdd:pfam16182 267 KSASLPGYGRNGLHRPQSADFFQYGSDGDVSWggmreYKIYPYEMLAVTNRGR 319
VHP smart00153
Villin headpiece domain;
348-383 1.12e-14

Villin headpiece domain;


Pssm-ID: 128458  Cd Length: 36  Bit Score: 67.34  E-value: 1.12e-14
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1020738777  348 HLSAEDFSRVFAMSPEEFGKLALWKRNELKKKASLF 383
Cdd:smart00153   1 YLSDEDFEEVFGMTREEFYKLPLWKQNQLKKKKGLF 36
VHP pfam02209
Villin headpiece domain;
348-383 6.81e-13

Villin headpiece domain;


Pssm-ID: 460493  Cd Length: 36  Bit Score: 62.40  E-value: 6.81e-13
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1020738777 348 HLSAEDFSRVFAMSPEEFGKLALWKRNELKKKASLF 383
Cdd:pfam02209   1 YLSDEDFEEVFGMSREEFYKLPKWKQNNLKKKAGLF 36
 
Name Accession Description Interval E-value
AbLIM_anchor pfam16182
Putative adherens-junction anchoring region of AbLIM; AbLIM_anchor is a domain lying between ...
 8-333 3.88e-86

Putative adherens-junction anchoring region of AbLIM; AbLIM_anchor is a domain lying between the LIM actin-binding and the vilin-head domain of actin-binding LIM proteins. It is likely that this domain is involved in anchoring abLIMs to circumferential actin bundles in specific cell types.


Pssm-ID: 465046 [Multi-domain]  Cd Length: 319  Bit Score: 263.95  E-value: 3.88e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1020738777   8 PLTSPGSVSPSRDSSVPGSPSS-IVAKMDNQVLGYKDLAAIPKDKAILDIERPDLMIYEPHFTYSLLEhvELPRSRERSL 86
Cdd:pfam16182   1 TRTSSESIISPPGSSISGSPSRvIYAKLDNEILDYKDLAALPKVKAIYDIERPDLISYEPYVSYSSDD--RLERQSYGES 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1020738777  87 SPKSTSPPPSP-----EVWADSRSPGIISQASAPRTTGTPRTS--LPHFHHPET-------------------------- 133
Cdd:pfam16182  79 LSTLSPSSEDSydsreLRQRRSSSPGSIGSPTYSRHGYTPTLSrsPQHFHRPGSesgrsspslsqpsdrkspptyvqapk 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1020738777 134 ------SRPDSNIYKKPPIYKQRESVGGSPQTkhliEDLIIESSKFPAAqppdpnqpakietdywpcppslAVVETEWRk 207
Cdd:pfam16182 159 hfhvpdTGVKDNIYRKPPIYKQHGTSASASQS----SEDIIHSSRFPAS----------------------GGEEEGWN- 211

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1020738777 208 rkasrrgaeeeeeeedddsgeemkaLRERQREELSKVTSNLGKMILKEEME-KSLPIRRKTRSLPDRTPFHTSL-HQGTS 285
Cdd:pfam16182 212 -------------------------RRLLQEEELSKIQSGLGKLILKEEMEaRSGSERRDPWSSPRSSPSGSSGsDSPYS 266

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1020738777 286 KSSSLPAYGRTTLSRLQSTEFSPSGSETGSPG-----LQIYPYEMLVVTNKGR 333
Cdd:pfam16182 267 KSASLPGYGRNGLHRPQSADFFQYGSDGDVSWggmreYKIYPYEMLAVTNRGR 319
VHP smart00153
Villin headpiece domain;
348-383 1.12e-14

Villin headpiece domain;


Pssm-ID: 128458  Cd Length: 36  Bit Score: 67.34  E-value: 1.12e-14
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1020738777  348 HLSAEDFSRVFAMSPEEFGKLALWKRNELKKKASLF 383
Cdd:smart00153   1 YLSDEDFEEVFGMTREEFYKLPLWKQNQLKKKKGLF 36
VHP pfam02209
Villin headpiece domain;
348-383 6.81e-13

Villin headpiece domain;


Pssm-ID: 460493  Cd Length: 36  Bit Score: 62.40  E-value: 6.81e-13
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1020738777 348 HLSAEDFSRVFAMSPEEFGKLALWKRNELKKKASLF 383
Cdd:pfam02209   1 YLSDEDFEEVFGMSREEFYKLPKWKQNNLKKKAGLF 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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