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Conserved domains on  [gi|1061385300|ref|NP_001317806|]
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Spastin/Vps4 C-terminal domain-containing protein [Caenorhabditis elegans]

Protein Classification

Vps4_C superfamily-containing protein( domain architecture ID 15023)

Vps4_C superfamily-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Vps4_C super family cl07827
Vps4 C terminal oligomerization domain; This domain is found at the C terminal of ATPase ...
 2-30 1.87e-04

Vps4 C terminal oligomerization domain; This domain is found at the C terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerization.


The actual alignment was detected with superfamily member pfam09336:

Pssm-ID: 462762 [Multi-domain]  Cd Length: 61  Bit Score: 34.01  E-value: 1.87e-04
                         10        20
                 ....*....|....*....|....*....
gi 1061385300  2 DFAEAARVVRPTVDDSQLDAYAAWDKKFG 30
Cdd:pfam09336 33 DFLKALKSSRPTVSKEDLEKYEEFTKEFG 61
 
Name Accession Description Interval E-value
Vps4_C pfam09336
Vps4 C terminal oligomerization domain; This domain is found at the C terminal of ATPase ...
 2-30 1.87e-04

Vps4 C terminal oligomerization domain; This domain is found at the C terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerization.


Pssm-ID: 462762 [Multi-domain]  Cd Length: 61  Bit Score: 34.01  E-value: 1.87e-04
                         10        20
                 ....*....|....*....|....*....
gi 1061385300  2 DFAEAARVVRPTVDDSQLDAYAAWDKKFG 30
Cdd:pfam09336 33 DFLKALKSSRPTVSKEDLEKYEEFTKEFG 61
 
Name Accession Description Interval E-value
Vps4_C pfam09336
Vps4 C terminal oligomerization domain; This domain is found at the C terminal of ATPase ...
 2-30 1.87e-04

Vps4 C terminal oligomerization domain; This domain is found at the C terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerization.


Pssm-ID: 462762 [Multi-domain]  Cd Length: 61  Bit Score: 34.01  E-value: 1.87e-04
                         10        20
                 ....*....|....*....|....*....
gi 1061385300  2 DFAEAARVVRPTVDDSQLDAYAAWDKKFG 30
Cdd:pfam09336 33 DFLKALKSSRPTVSKEDLEKYEEFTKEFG 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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