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Conserved domains on  [gi|1063688749|ref|NP_001319173|]
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RNI-like superfamily protein [Arabidopsis thaliana]

Protein Classification

FBD domain-containing protein( domain architecture ID 10651840)

FBD domain-containing protein may be associated with nuclear processes in plants

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FBD smart00579
domain in FBox and BRCT domain containing plant proteins;
351-413 4.42e-15

domain in FBox and BRCT domain containing plant proteins;


:

Pssm-ID: 214730  Cd Length: 72  Bit Score: 69.48  E-value: 4.42e-15
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063688749  351 EISEYGGSFQELEQMRHFLGKLERLETVKVGVHAENNNNNEFLRANLLTLPRLSSKCnNIQFI 413
Cdd:smart00579  11 EIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDEEKLEILKELLSLPRASSSC-QVQFL 72
 
Name Accession Description Interval E-value
FBD smart00579
domain in FBox and BRCT domain containing plant proteins;
351-413 4.42e-15

domain in FBox and BRCT domain containing plant proteins;


Pssm-ID: 214730  Cd Length: 72  Bit Score: 69.48  E-value: 4.42e-15
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063688749  351 EISEYGGSFQELEQMRHFLGKLERLETVKVGVHAENNNNNEFLRANLLTLPRLSSKCnNIQFI 413
Cdd:smart00579  11 EIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDEEKLEILKELLSLPRASSSC-QVQFL 72
 
Name Accession Description Interval E-value
FBD smart00579
domain in FBox and BRCT domain containing plant proteins;
351-413 4.42e-15

domain in FBox and BRCT domain containing plant proteins;


Pssm-ID: 214730  Cd Length: 72  Bit Score: 69.48  E-value: 4.42e-15
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063688749  351 EISEYGGSFQELEQMRHFLGKLERLETVKVGVHAENNNNNEFLRANLLTLPRLSSKCnNIQFI 413
Cdd:smart00579  11 EIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDEEKLEILKELLSLPRASSSC-QVQFL 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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