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Conserved domains on  [gi|1063695103|ref|NP_001320340|]
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myb domain protein 31 [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03212 super family cl31985
Transcription repressor MYB5; Provisional
 1-41 1.37e-12

Transcription repressor MYB5; Provisional


The actual alignment was detected with superfamily member PLN03212:

Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 65.48  E-value: 1.37e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1063695103   1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLV 41
Cdd:PLN03212   88 LILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLL 128
 
Name Accession Description Interval E-value
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 1-41 1.37e-12

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 65.48  E-value: 1.37e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1063695103   1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLV 41
Cdd:PLN03212   88 LILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLL 128
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 2-36 1.48e-09

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 52.51  E-value: 1.48e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1063695103   2 IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHL 36
Cdd:pfam00249  12 LLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 1-36 3.02e-07

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 46.03  E-value: 3.02e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1063695103   1 MIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHL 36
Cdd:cd00167     9 LLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
1-38 3.42e-07

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 46.06  E-value: 3.42e-07
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 1063695103    1 MIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKK 38
Cdd:smart00717  11 LLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 2-60 5.36e-03

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 37.84  E-value: 5.36e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1063695103   2 IIHLQALLGNRWAAIASYLPQRTDNDIKNYWN--------THLKKKLVMMKFQNgiINENKTNLATD 60
Cdd:COG5147    83 LIDLDKELGTQWSTIADYKDRRTAQQCVERYVntledlssTHDSKLQRRNEFDK--IDPFNENSARR 147
 
Name Accession Description Interval E-value
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 1-41 1.37e-12

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 65.48  E-value: 1.37e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1063695103   1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLV 41
Cdd:PLN03212   88 LILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLL 128
PLN03091 PLN03091
hypothetical protein; Provisional
 1-40 2.74e-12

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 65.77  E-value: 2.74e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1063695103   1 MIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 40
Cdd:PLN03091   77 LIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 2-36 1.48e-09

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 52.51  E-value: 1.48e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1063695103   2 IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHL 36
Cdd:pfam00249  12 LLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 1-36 3.02e-07

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 46.03  E-value: 3.02e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1063695103   1 MIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHL 36
Cdd:cd00167     9 LLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
1-38 3.42e-07

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 46.06  E-value: 3.42e-07
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 1063695103    1 MIIHLQALLG-NRWAAIASYLPQRTDNDIKNYWNTHLKK 38
Cdd:smart00717  11 LLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 2-60 5.36e-03

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 37.84  E-value: 5.36e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1063695103   2 IIHLQALLGNRWAAIASYLPQRTDNDIKNYWN--------THLKKKLVMMKFQNgiINENKTNLATD 60
Cdd:COG5147    83 LIDLDKELGTQWSTIADYKDRRTAQQCVERYVntledlssTHDSKLQRRNEFDK--IDPFNENSARR 147
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 2-40 9.18e-03

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 33.82  E-value: 9.18e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1063695103   2 IIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKL 40
Cdd:pfam13921   9 LLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPKI 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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