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Conserved domains on  [gi|1063696072|ref|NP_001321499|]
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Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 18741726)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
229-375 4.86e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 64.26  E-value: 4.86e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 229 LHALIRALHLDVSLAVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISP 308
Cdd:COG0457    28 IEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDP 107

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1063696072 309 -LAEFQVGLAWLALLQGNIssPQIFACIEQAVQRSPYYPEPHNLHGLVCEARHNYHTAIASYRLALAA 375
Cdd:COG0457   108 dDAEALYNLGLALLELGRY--DEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAA 173
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 2-98 3.66e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.09  E-value: 3.66e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072   2 FTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLswskeciNLGAFGWAA 81
Cdd:COG4235    33 YDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF-------QQGDYAEAI 105

                          90
                  ....*....|....*..
gi 1063696072  82 SLLEDARKAAKASSELA 98
Cdd:COG4235   106 AAWQKLLALLPADAPAR 122
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
229-375 4.86e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 64.26  E-value: 4.86e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 229 LHALIRALHLDVSLAVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISP 308
Cdd:COG0457    28 IEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDP 107

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1063696072 309 -LAEFQVGLAWLALLQGNIssPQIFACIEQAVQRSPYYPEPHNLHGLVCEARHNYHTAIASYRLALAA 375
Cdd:COG0457   108 dDAEALYNLGLALLELGRY--DEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAA 173
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 2-98 3.66e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.09  E-value: 3.66e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072   2 FTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLswskeciNLGAFGWAA 81
Cdd:COG4235    33 YDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF-------QQGDYAEAI 105

                          90
                  ....*....|....*..
gi 1063696072  82 SLLEDARKAAKASSELA 98
Cdd:COG4235   106 AAWQKLLALLPADAPAR 122
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 245-409 1.36e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.84  E-value: 1.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 245 AWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISP-LAEFQVGLAWLALLQ 323
Cdd:TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPdNTEAQIGLAQLLLAA 682

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 324 GNISSP-QIFACIEQAvqrspyYPEPHNLHGLVCE---ARHNYHTAIASYRlalAAMSIYPESSvkshagkVSINLVRSL 399
Cdd:TIGR02917 683 KRTESAkKIAKSLQKQ------HPKAALGFELEGDlylRQKDYPAAIQAYR---KALKRAPSSQ-------NAIKLHRAL 746

                         170
                  ....*....|
gi 1063696072 400 SKAGRFKESV 409
Cdd:TIGR02917 747 LASGNTAEAV 756
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
229-375 4.86e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 64.26  E-value: 4.86e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 229 LHALIRALHLDVSLAVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISP 308
Cdd:COG0457    28 IEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDP 107

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1063696072 309 -LAEFQVGLAWLALLQGNIssPQIFACIEQAVQRSPYYPEPHNLHGLVCEARHNYHTAIASYRLALAA 375
Cdd:COG0457   108 dDAEALYNLGLALLELGRY--DEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAA 173
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 262-450 2.61e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 64.24  E-value: 2.61e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 262 AKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISP-LAEFQVGLAWLALLQGNISspQIFACIEQAVQ 340
Cdd:COG3914    97 ALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPdFAEAYLNLGEALRRLGRLE--EAIAALRRALE 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 341 RSPYYPEPHNLHGLVCEARHNYHTAIASYRLALAamsiypessVKSHAGKVSINLVRSLSKAGRFKESVMECANLKskgL 420
Cdd:COG3914   175 LDPDNAEALNNLGNALQDLGRLEEAIAAYRRALE---------LDPDNADAHSNLLFALRQACDWEVYDRFEELLA---A 242

                         170       180       190
                  ....*....|....*....|....*....|
gi 1063696072 421 LDAGGLQIYAFSLWRTGQNDSALsvIRDLA 450
Cdd:COG3914   243 LARGPSELSPFALLYLPDDDPAE--LLALA 270
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
236-435 6.82e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 60.79  E-value: 6.82e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 236 LHLDVSLAVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISP-LAEFQV 314
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPdDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 315 GLAWLALLQGNISspQIFACIEQAVQRSPYYPEPHNLHGLVCEARHNYHTAIASYRLALAAMSIYPESSVkshagkvsiN 394
Cdd:COG0457    81 NLGLALQALGRYE--EALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY---------N 149

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1063696072 395 LVRSLSKAGRFKESVMECANLKSKGLLDAGGLQIYAFSLWR 435
Cdd:COG0457   150 LGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALAL 190
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 243-375 1.13e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.81  E-value: 1.13e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 243 AVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISP-LAEFQVGLAWLAL 321
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPdEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1063696072 322 LQGNISspQIFACIEQAVQRSPYYPEPHNLHGLVCEARHNYHTAIASYRLALAA 375
Cdd:COG4783    84 KAGDYD--EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 2-98 3.66e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.09  E-value: 3.66e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072   2 FTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLswskeciNLGAFGWAA 81
Cdd:COG4235    33 YDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF-------QQGDYAEAI 105

                          90
                  ....*....|....*..
gi 1063696072  82 SLLEDARKAAKASSELA 98
Cdd:COG4235   106 AAWQKLLALLPADAPAR 122
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 273-374 4.47e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 50.00  E-value: 4.47e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 273 DPTLALPWAGSADTYARESTSDEAFESCLRAAQISP-LAEFQVGLAWLALLQGNisSPQIFACIEQAVQRSPYYPEPHNL 351
Cdd:COG4235    13 NPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPdNADALLDLAEALLAAGD--TEEAEELLERALALDPDNPEALYL 90

                          90       100
                  ....*....|....*....|...
gi 1063696072 352 HGLVCEARHNYHTAIASYRLALA 374
Cdd:COG4235    91 LGLAAFQQGDYAEAIAAWQKLLA 113
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 2-92 5.44e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.34  E-value: 5.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072   2 FTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLswskeciNLGAFGWAA 81
Cdd:COG5010    70 FEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLL-------SLGQDDEAK 142

                          90
                  ....*....|.
gi 1063696072  82 SLLEDARKAAK 92
Cdd:COG5010   143 AALQRALGTSP 153
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 2-98 6.72e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.04  E-value: 6.72e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072   2 FTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLS---WSKecinlgAFG 78
Cdd:COG2956    58 YDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQegdWEK------AIE 131

                          90       100
                  ....*....|....*....|
gi 1063696072  79 WAASLLEDARKAAKASSELA 98
Cdd:COG2956   132 VLERLLKLGPENAHAYCELA 151
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
2-61 2.62e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 50.01  E-value: 2.62e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072   2 FTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLA 61
Cdd:COG0457    58 YEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG 117
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
2-61 2.77e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 50.01  E-value: 2.77e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072   2 FTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLA 61
Cdd:COG0457    24 YEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
2-98 2.84e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 49.62  E-value: 2.84e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072   2 FTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLswskeciNLGAFGWAA 81
Cdd:COG0457    92 YEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALE-------KLGRYEEAL 164

                          90
                  ....*....|....*..
gi 1063696072  82 SLLEDARKAAKASSELA 98
Cdd:COG0457   165 ELLEKLEAAALAALLAA 181
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 229-351 5.14e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 50.38  E-value: 5.14e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 229 LHALIRALHLDVSLAVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISP 308
Cdd:COG3914    98 LALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDP 177

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1063696072 309 -LAEFQVGLAWLALLQGNIssPQIFACIEQAVQRSPYYPEPHNL 351
Cdd:COG3914   178 dNAEALNNLGNALQDLGRL--EEAIAAYRRALELDPDNADAHSN 219
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 2-112 9.08e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.34  E-value: 9.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072   2 FTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLswskeciNLGAFGWAA 81
Cdd:COG4783    20 YDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL-------KAGDYDEAL 92

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1063696072  82 SLLEDARKAAKASSELASSMSCIWKLHGDIQ 112
Cdd:COG4783    93 ALLEKALKLDPEHPEAYLRLARAYRALGRPD 123
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 204-375 9.17e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.57  E-value: 9.17e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 204 ALLLECENSEFWVALGCMSD-----NSALKLHAliRALHLDVSLAVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLAL 278
Cdd:COG2956    34 ALELDPETVEAHLALGNLYRrrgeyDRAIRIHQ--KLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 279 PWAGSADTYARESTSDEAFESCLRAAQISP-LAEFQVGLAWLALLQGNIssPQIFACIEQAVQRSPYYPEPHNLHGLVCE 357
Cdd:COG2956   112 ALRLLAEIYEQEGDWEKAIEVLERLLKLGPeNAHAYCELAELYLEQGDY--DEAIEALEKALKLDPDCARALLLLAELYL 189

                         170
                  ....*....|....*...
gi 1063696072 358 ARHNYHTAIASYRLALAA 375
Cdd:COG2956   190 EQGDYEEAIAALERALEQ 207
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1-110 2.89e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.03  E-value: 2.89e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072   1 MFTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLSwskecinLGAFGWA 80
Cdd:COG2956    91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLE-------QGDYDEA 163

                          90       100       110
                  ....*....|....*....|....*....|
gi 1063696072  81 ASLLEDARKAAKASSELASSMSCIWKLHGD 110
Cdd:COG2956   164 IEALEKALKLDPDCARALLLLAELYLEQGD 193
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
2-91 2.91e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.62  E-value: 2.91e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072   2 FTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVElFEQALKISPQNISVLYGLASGLLswskeciNLGAFGWAA 81
Cdd:COG3063     8 LEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLL-------ELGDYDEAL 79

                          90
                  ....*....|
gi 1063696072  82 SLLEDARKAA 91
Cdd:COG3063    80 AYLERALELD 89
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 2-61 3.46e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.65  E-value: 3.46e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072   2 FTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLA 61
Cdd:COG2956   160 YDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLA 219
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 229-352 5.81e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 46.91  E-value: 5.81e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 229 LHALIRALHLDVSLAVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISP 308
Cdd:COG3914   132 LAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDP 211

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1063696072 309 -LAEFQVGLAWLALLQGNISSPQIFACIEQAVQRSPYYPEPHNLH 352
Cdd:COG3914   212 dNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALL 256
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 4-341 6.36e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.88  E-value: 6.36e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072   4 AAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLswskecinlgafgwAASL 83
Cdd:COG2956    26 KAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL--------------KAGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072  84 LEDARKAAKASSELASSmsciwklHGDIQLTYARCFpwsggTENSEFTlktfsdsilswrsicysaalSAKASYQRALHL 163
Cdd:COG2956    92 LDRAEELLEKLLELDPD-------DAEALRLLAEIY-----EQEGDWE--------------------KAIEVLERLLKL 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 164 APWQANVYtdiaitcdlvsslsddsdtssswklpekMVLGALLLEcensefwvalgcmSDNSALKLHALIRALHLDVSLA 243
Cdd:COG2956   140 GPENAHAY----------------------------CELAELYLE-------------QGDYDEAIEALEKALKLDPDCA 178

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 244 VAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISPLAEFQVGLAWLALLQ 323
Cdd:COG2956   179 RALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERK 258

                         330
                  ....*....|....*...
gi 1063696072 324 GNIssPQIFACIEQAVQR 341
Cdd:COG2956   259 EGL--EAALALLERQLRR 274
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 245-409 1.36e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.84  E-value: 1.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 245 AWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISP-LAEFQVGLAWLALLQ 323
Cdd:TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPdNTEAQIGLAQLLLAA 682

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 324 GNISSP-QIFACIEQAvqrspyYPEPHNLHGLVCE---ARHNYHTAIASYRlalAAMSIYPESSvkshagkVSINLVRSL 399
Cdd:TIGR02917 683 KRTESAkKIAKSLQKQ------HPKAALGFELEGDlylRQKDYPAAIQAYR---KALKRAPSSQ-------NAIKLHRAL 746

                         170
                  ....*....|
gi 1063696072 400 SKAGRFKESV 409
Cdd:TIGR02917 747 LASGNTAEAV 756
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 2-65 1.41e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 45.75  E-value: 1.41e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1063696072   2 FTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLL 65
Cdd:COG3914   162 LEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALR 225
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 2-112 1.75e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 45.37  E-value: 1.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072   2 FTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLSwskecinLGAFGWAA 81
Cdd:COG3914    94 YEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRR-------LGRLEEAI 166

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1063696072  82 SLLEDARKAAKASSELASSMSCIWKLHGDIQ 112
Cdd:COG3914   167 AALRRALELDPDNAEALNNLGNALQDLGRLE 197
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 205-450 2.05e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 44.33  E-value: 2.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 205 LLLECENSEFWVALGC---MSDNSALKLHALIRALHLDVSLAVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWA 281
Cdd:COG2956     1 LLLPVAAALGWYFKGLnylLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 282 GSADTYARESTSDEAFESCLRAAQISPL-AEFQVGLAWLALLQGNIssPQIFACIEQAVQRSPYYPEPHNLHGLVCEARH 360
Cdd:COG2956    81 ELAQDYLKAGLLDRAEELLEKLLELDPDdAEALRLLAEIYEQEGDW--EKAIEVLERLLKLGPENAHAYCELAELYLEQG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 361 NYHTAIASYRLALAamsIYPESSvkshagKVSINLVRSLSKAGRFKESVMECANLKSKGLLDAGGLQIYAFSLWRTGQND 440
Cdd:COG2956   159 DYDEAIEALEKALK---LDPDCA------RALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPE 229

                         250
                  ....*....|
gi 1063696072 441 SALSVIRDLA 450
Cdd:COG2956   230 EALELLRKAL 239
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 4-87 2.06e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 42.30  E-value: 2.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072   4 AAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLlswskecINLGAFGWAASL 83
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAL-------LAAGDTEEAEEL 73


                  ....
gi 1063696072  84 LEDA 87
Cdd:COG4235    74 LERA 77
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 277-407 2.58e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.10  E-value: 2.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 277 ALPWAGSADTYARESTSDEAFESCLRAAQISPL-AEFQVGLAWLALLQGNIssPQIFACIEQAVQRSPYYPEPHNLHGLV 355
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDnPEAFALLGEILLQLGDL--DEAIVLLHEALELDPDEPEARLNLGLA 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1063696072 356 CEARHNYHTAIASYRLALAAMSIYPEssvkshagkVSINLVRSLSKAGRFKE 407
Cdd:COG4783    82 LLKAGDYDEALALLEKALKLDPEHPE---------AYLRLARAYRALGRPDE 124
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 276-407 2.60e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.64  E-value: 2.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 276 LALPWAGSADTYARESTSDEAFESCLRAAQISPLAEFQVGLAWLALLQGNIssPQIFACIEQAVQRSPYYPEPHNLHGLV 355
Cdd:COG5010    20 LRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDF--EESLALLEQALQLDPNNPELYYNLALL 97

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1063696072 356 CEARHNYHTAIASYRLALAAMSIYPEssvkshagkVSINLVRSLSKAGRFKE 407
Cdd:COG5010    98 YSRSGDKDEAKEYYEKALALSPDNPN---------AYSNLAALLLSLGQDDE 140
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 231-407 3.79e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.56  E-value: 3.79e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 231 ALIRALHLDVSLAVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISP-L 309
Cdd:COG2956    98 LLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPdC 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 310 AEFQVGLAWLALLQGNIssPQIFACIEQAVQRSPYYPEPHNLHGLVCEARHNYHTAIASYRLALAamsIYPESSVKshag 389
Cdd:COG2956   178 ARALLLLAELYLEQGDY--EEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALE---LDPSDDLL---- 248

                         170
                  ....*....|....*...
gi 1063696072 390 kvsINLVRSLSKAGRFKE 407
Cdd:COG2956   249 ---LALADLLERKEGLEA 263
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 284-407 5.77e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.92  E-value: 5.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 284 ADTYARESTSDEAFESCLRAAQISP-LAEFQVGLAWLALLQGNISSPQifACIEQAVQRSPYYPEPHNLHGLVCEARHNY 362
Cdd:TIGR02917 132 GLAYLGLGQLELAQKSYEQALAIDPrSLYAKLGLAQLALAENRFDEAR--ALIDEVLTADPGNVDALLLKGDLLLSLGNI 209

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1063696072 363 HTAIASYRLALAamsIYPESSvkshagKVSINLVRSLSKAGRFKE 407
Cdd:TIGR02917 210 ELALAAYRKAIA---LRPNNI------AVLLALATILIEAGEFEE 245
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 229-375 5.92e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.79  E-value: 5.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 229 LHALIRALHLDVSLAVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISP 308
Cdd:COG2956   130 IEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDP 209

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1063696072 309 -LAEFQVGLAWLALLQGNIssPQIFACIEQAVQRSPYYPEPHNLHGLVcEARHNYHTAIASYRLALAA 375
Cdd:COG2956   210 dYLPALPRLAELYEKLGDP--EEALELLRKALELDPSDDLLLALADLL-ERKEGLEAALALLERQLRR 274
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 226-374 1.51e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.33  E-value: 1.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 226 ALKLHALIRALHLDVSLAVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQ 305
Cdd:COG5010     3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 306 ISP-LAEFQVGLAWLALLQGNIssPQIFACIEQAVQRSPYYPEPHNLHGLVCEARHNYHTAIASYRLALA 374
Cdd:COG5010    83 LDPnNPELYYNLALLYSRSGDK--DEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
153-323 2.04e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 41.15  E-value: 2.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 153 AKASYQRALHLAPWQANVYTDIAITCDLVSSlsddsdtsssWKLPEKMVLGALLLECENSEFWVALG-CMSD----NSAL 227
Cdd:COG0457    27 AIEDYEKALELDPDDAEALYNLGLAYLRLGR----------YEEALADYEQALELDPDDAEALNNLGlALQAlgryEEAL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 228 KLHAliRALHLDVSLAVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQIS 307
Cdd:COG0457    97 EDYD--KALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174

                         170
                  ....*....|....*.
gi 1063696072 308 PLAEFQVGLAWLALLQ 323
Cdd:COG0457   175 LAALLAAALGEAALAL 190
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
2-53 5.12e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.51  E-value: 5.12e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1063696072   2 FTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQN 53
Cdd:COG4785   123 YDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPND 174
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 229-310 5.42e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.79  E-value: 5.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 229 LHALIRALHLDVSLAVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISP 308
Cdd:COG5010    74 LALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153


                  ..
gi 1063696072 309 LA 310
Cdd:COG5010   154 LK 155
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
294-375 5.44e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.07  E-value: 5.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 294 DEAFESCLRAAQISP-LAEFQVGLAWLALLQGNISSPQIFaciEQAVQRSPYYPEPHNLHGLVCEARHNYHTAIASYRLA 372
Cdd:COG3063     9 EEAEEYYEKALELDPdNADALNNLGLLLLEQGRYDEAIAL---EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERA 85


                  ...
gi 1063696072 373 LAA 375
Cdd:COG3063    86 LEL 88
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
242-370 5.71e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.51  E-value: 5.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072 242 LAVAWAFMGQIFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISP---LAEFQVGLAW 318
Cdd:COG4785    72 LAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPdyaYAYLNRGIAL 151

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1063696072 319 LALlqGNISSpqifAC--IEQAVQRSPYYPEPHNLHGLvCEARHNYHTAIASYR 370
Cdd:COG4785   152 YYL--GRYEL----AIadLEKALELDPNDPERALWLYL-AERKLDPEKALALLL 198
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
2-98 7.16e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.13  E-value: 7.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063696072   2 FTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLswskeciNLGAFGWAa 81
Cdd:COG4785    89 YDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALY-------YLGRYELA- 160

                          90
                  ....*....|....*..
gi 1063696072  82 slLEDARKAAKASSELA 98
Cdd:COG4785   161 --IADLEKALELDPNDP 175
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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