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Conserved domains on  [gi|1063711708|ref|NP_001325717|]
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Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 115-474 1.19e-58

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


:

Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 197.12  E-value: 1.19e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711708 115 QIATGKYHTLLI-NNSKVYSCGVSLSGVLAHGSETTQcvaFTPIEFPFPAQVAQVSATQNHSAFVLQSGQVLTCGDNSSH 193
Cdd:COG5184     2 QVAAGGSHSCALkSDGTVWCWGDNSYGQLGDGTTTDR---STPVRVPGLSNVVAVAAGGDHTCALKADGTVWCWGNNSYG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711708 194 CCGhLDTSRPIFRPKLVEALkgTPCKQVAAGLHFTVFLSREGHAYTCGSNTHGQLGHGDTLDRPVPKVVEflKTIGPVVQ 273
Cdd:COG5184    79 QLG-DGTTTDRTTPVKVPGL--TGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPVQVD--AGLSGVVA 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711708 274 IAAGPSYVLAVTQDGSVYSFGSGSNFCLGHGEQQDELQPRVIQAFKrkgiHILRVSAGDEHAVALDSNGRVYTWGKGYCG 353
Cdd:COG5184   154 IAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVGGLS----GVVAVAAGGDHSCALKSDGTVWCWGSNSSG 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711708 354 ALGHGDENDKITPQVLVNLNNclAVQVCARKRKTFVLVEGGLLYGFGWMGFGSLGfpdRGVSDKVLRPRVLECLKPhrVS 433
Cdd:COG5184   230 QLGDGTTTDRATPVQVAGLTG--VVAIAAGGSHTCALKSDGTVWCWGDNSYGQLG---DGTTTDRSTPVKVPGLSG--VV 302

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1063711708 434 QVSTGLYHTIVVTQRGRIFGFGDNERAQLGHDSLRGCLEPT 474
Cdd:COG5184   303 AVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTDRSTPV 343
F-box pfam00646
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ...
 10-58 7.20e-03

F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


:

Pssm-ID: 425796  Cd Length: 43  Bit Score: 34.44  E-value: 7.20e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1063711708  10 FEDLPSHLILEVLTsgRLSAVDLLSLELTSKvfggshgfyplKFRSLAD 58
Cdd:pfam00646   1 LLDLPDDLLLEILS--RLDPKDLLRLSLVSK-----------RWRSLVD 36
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 115-474 1.19e-58

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 197.12  E-value: 1.19e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711708 115 QIATGKYHTLLI-NNSKVYSCGVSLSGVLAHGSETTQcvaFTPIEFPFPAQVAQVSATQNHSAFVLQSGQVLTCGDNSSH 193
Cdd:COG5184     2 QVAAGGSHSCALkSDGTVWCWGDNSYGQLGDGTTTDR---STPVRVPGLSNVVAVAAGGDHTCALKADGTVWCWGNNSYG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711708 194 CCGhLDTSRPIFRPKLVEALkgTPCKQVAAGLHFTVFLSREGHAYTCGSNTHGQLGHGDTLDRPVPKVVEflKTIGPVVQ 273
Cdd:COG5184    79 QLG-DGTTTDRTTPVKVPGL--TGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPVQVD--AGLSGVVA 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711708 274 IAAGPSYVLAVTQDGSVYSFGSGSNFCLGHGEQQDELQPRVIQAFKrkgiHILRVSAGDEHAVALDSNGRVYTWGKGYCG 353
Cdd:COG5184   154 IAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVGGLS----GVVAVAAGGDHSCALKSDGTVWCWGSNSSG 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711708 354 ALGHGDENDKITPQVLVNLNNclAVQVCARKRKTFVLVEGGLLYGFGWMGFGSLGfpdRGVSDKVLRPRVLECLKPhrVS 433
Cdd:COG5184   230 QLGDGTTTDRATPVQVAGLTG--VVAIAAGGSHTCALKSDGTVWCWGDNSYGQLG---DGTTTDRSTPVKVPGLSG--VV 302

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1063711708 434 QVSTGLYHTIVVTQRGRIFGFGDNERAQLGHDSLRGCLEPT 474
Cdd:COG5184   303 AVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTDRSTPV 343
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
234-284 6.47e-12

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 60.22  E-value: 6.47e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1063711708 234 EGHAYTCGSNTHGQLGHGDTLDRPVPKVVEFLKTiGPVVQIAAGPSYVLAV 284
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSG-NKVVQVACGGDHTVAL 50
F-box pfam00646
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ...
 10-58 7.20e-03

F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 425796  Cd Length: 43  Bit Score: 34.44  E-value: 7.20e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1063711708  10 FEDLPSHLILEVLTsgRLSAVDLLSLELTSKvfggshgfyplKFRSLAD 58
Cdd:pfam00646   1 LLDLPDDLLLEILS--RLDPKDLLRLSLVSK-----------RWRSLVD 36
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 115-474 1.19e-58

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 197.12  E-value: 1.19e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711708 115 QIATGKYHTLLI-NNSKVYSCGVSLSGVLAHGSETTQcvaFTPIEFPFPAQVAQVSATQNHSAFVLQSGQVLTCGDNSSH 193
Cdd:COG5184     2 QVAAGGSHSCALkSDGTVWCWGDNSYGQLGDGTTTDR---STPVRVPGLSNVVAVAAGGDHTCALKADGTVWCWGNNSYG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711708 194 CCGhLDTSRPIFRPKLVEALkgTPCKQVAAGLHFTVFLSREGHAYTCGSNTHGQLGHGDTLDRPVPKVVEflKTIGPVVQ 273
Cdd:COG5184    79 QLG-DGTTTDRTTPVKVPGL--TGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPVQVD--AGLSGVVA 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711708 274 IAAGPSYVLAVTQDGSVYSFGSGSNFCLGHGEQQDELQPRVIQAFKrkgiHILRVSAGDEHAVALDSNGRVYTWGKGYCG 353
Cdd:COG5184   154 IAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVGGLS----GVVAVAAGGDHSCALKSDGTVWCWGSNSSG 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711708 354 ALGHGDENDKITPQVLVNLNNclAVQVCARKRKTFVLVEGGLLYGFGWMGFGSLGfpdRGVSDKVLRPRVLECLKPhrVS 433
Cdd:COG5184   230 QLGDGTTTDRATPVQVAGLTG--VVAIAAGGSHTCALKSDGTVWCWGDNSYGQLG---DGTTTDRSTPVKVPGLSG--VV 302

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1063711708 434 QVSTGLYHTIVVTQRGRIFGFGDNERAQLGHDSLRGCLEPT 474
Cdd:COG5184   303 AVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTDRSTPV 343
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 166-476 3.53e-55

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 187.88  E-value: 3.53e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711708 166 AQVSATQNHSAFVLQSGQVLTCGDNSSHCCGhLDTSRPIFRPKLVEALKGTpcKQVAAGLHFTVFLSREGHAYTCGSNTH 245
Cdd:COG5184     1 TQVAAGGSHSCALKSDGTVWCWGDNSYGQLG-DGTTTDRSTPVRVPGLSNV--VAVAAGGDHTCALKADGTVWCWGNNSY 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711708 246 GQLGHGDTLDRPVPKVVEFLktiGPVVQIAAGPSYVLAVTQDGSVYSFGSGSNFCLGHGEQQDELQPRVIQAfkrKGIHI 325
Cdd:COG5184    78 GQLGDGTTTDRTTPVKVPGL---TGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPVQVDA---GLSGV 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063711708 326 LRVSAGDEHAVALDSNGRVYTWGKGYCGALGHGDENDKITPQVLVNLNNclAVQVCARKRKTFVLVEGGLLYGFGWMGFG 405
Cdd:COG5184   152 VAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVGGLSG--VVAVAAGGDHSCALKSDGTVWCWGSNSSG 229

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063711708 406 SLGfpdRGVSDKVLRPRVLEclKPHRVSQVSTGLYHTIVVTQRGRIFGFGDNERAQLGHDSLRGCLEPTEI 476
Cdd:COG5184   230 QLG---DGTTTDRATPVQVA--GLTGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVKV 295
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
234-284 6.47e-12

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 60.22  E-value: 6.47e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1063711708 234 EGHAYTCGSNTHGQLGHGDTLDRPVPKVVEFLKTiGPVVQIAAGPSYVLAV 284
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSG-NKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
287-338 7.94e-10

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 54.45  E-value: 7.94e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1063711708 287 DGSVYSFGSGSNFCLGHGEQQDELQPRVIQAFkrKGIHILRVSAGDEHAVAL 338
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGL--SGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
341-382 1.17e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 45.20  E-value: 1.17e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1063711708 341 NGRVYTWGKGYCGALGHGDENDKITPQVLVNLNNCLAVQVCA 382
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVAC 42
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
325-353 1.63e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 44.34  E-value: 1.63e-06
                          10        20
                  ....*....|....*....|....*....
gi 1063711708 325 ILRVSAGDEHAVALDSNGRVYTWGKGYCG 353
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYG 29
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
181-231 3.01e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 44.05  E-value: 3.01e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1063711708 181 SGQVLTCGDNSSHCCGHlDTSRPIFRPKLVEALKGTPCKQVAAGLHFTVFL 231
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGL-GTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
219-247 9.51e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 42.03  E-value: 9.51e-06
                          10        20
                  ....*....|....*....|....*....
gi 1063711708 219 KQVAAGLHFTVFLSREGHAYTCGSNTHGQ 247
Cdd:pfam13540   2 VSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
432-461 3.06e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 40.87  E-value: 3.06e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 1063711708 432 VSQVSTGLYHTIVVTQRGRIFGFGDNERAQ 461
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
394-445 9.85e-04

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 37.11  E-value: 9.85e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1063711708 394 GLLYGFGWMGFGSLGfpdRGVSDKVLRPRVLECLKPHRVSQVSTGLYHTIVV 445
Cdd:pfam00415   2 GRVYTWGRNDYGQLG---LGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
271-298 1.30e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 36.25  E-value: 1.30e-03
                          10        20
                  ....*....|....*....|....*...
gi 1063711708 271 VVQIAAGPSYVLAVTQDGSVYSFGSGSN 298
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSY 28
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
165-194 2.25e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 35.48  E-value: 2.25e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 1063711708 165 VAQVSATQNHSAFVLQSGQVLTCGDNSSHC 194
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
F-box pfam00646
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ...
 10-58 7.20e-03

F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 425796  Cd Length: 43  Bit Score: 34.44  E-value: 7.20e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1063711708  10 FEDLPSHLILEVLTsgRLSAVDLLSLELTSKvfggshgfyplKFRSLAD 58
Cdd:pfam00646   1 LLDLPDDLLLEILS--RLDPKDLLRLSLVSK-----------RWRSLVD 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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