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Conserved domains on  [gi|1063713801|ref|NP_001326163|]
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Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

Protein Classification

RCC1 domain-containing protein( domain architecture ID 11474102)

RCC1 (regulator of chromosome condensation) domain-containing protein similar to Arabidopsis UVR8 (UV RESISTANCE LOCUS 8), which plays an important role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway.

Gene Ontology:  GO:0003682|GO:0005085
PubMed:  9510255|18442486

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 146-512 1.49e-62

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


:

Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 208.29  E-value: 1.49e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063713801 146 SQAVAGPGHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQPVRSLQGVriIQAAAGAARTMLISDDGKVYACGKESFG 225
Cdd:COG5184     1 TQVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRVPGLSNV--VAVAAGGDHTCALKADGTVWCWGNNSYG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063713801 226 EAeygGQGTK-PVTTPQLVTSLKNifVVQAAIGNYFTAVLSREGKVYTFSWGNDGRLGHQTEAADVEPRPLLGPLENvpV 304
Cdd:COG5184    79 QL---GDGTTtDRTTPVKVPGLTG--VVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPVQVDAGLSG--V 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063713801 305 VQIAAGYCYLLALAcqPNGmSVYSVGCGLGGKLGHGSRTDEKYPRvieqfQILNLQP-RVVAAGAWHAAVVGQDGRVCTW 383
Cdd:COG5184   152 VAIAAGGYHTCALK--SDG-TVWCWGANSYGQLGDGTTTDRPTPV-----QVGGLSGvVAVAAGGDHSCALKSDGTVWCW 223

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063713801 384 GWGRYGCLGHGNEECESVPKVVEGLSHVKAvhVATGDYTTFVVSDDGDVYSFGCGESASLGHhpsfdeqGNRhANVLSPT 463
Cdd:COG5184   224 GSNSSGQLGDGTTTDRATPVQVAGLTGVVA--IAAGGSHTCALKSDGTVWCWGDNSYGQLGD-------GTT-TDRSTPV 293

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1063713801 464 VVTSLKQVnermVQISLTNSiywnaHTFALTESGKLFAFGAGDQGQLGT 512
Cdd:COG5184   294 KVPGLSGV----VAVAAGSS-----HTCALLTDGTVWCWGDNAYGQLGD 333
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 146-512 1.49e-62

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 208.29  E-value: 1.49e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063713801 146 SQAVAGPGHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQPVRSLQGVriIQAAAGAARTMLISDDGKVYACGKESFG 225
Cdd:COG5184     1 TQVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRVPGLSNV--VAVAAGGDHTCALKADGTVWCWGNNSYG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063713801 226 EAeygGQGTK-PVTTPQLVTSLKNifVVQAAIGNYFTAVLSREGKVYTFSWGNDGRLGHQTEAADVEPRPLLGPLENvpV 304
Cdd:COG5184    79 QL---GDGTTtDRTTPVKVPGLTG--VVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPVQVDAGLSG--V 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063713801 305 VQIAAGYCYLLALAcqPNGmSVYSVGCGLGGKLGHGSRTDEKYPRvieqfQILNLQP-RVVAAGAWHAAVVGQDGRVCTW 383
Cdd:COG5184   152 VAIAAGGYHTCALK--SDG-TVWCWGANSYGQLGDGTTTDRPTPV-----QVGGLSGvVAVAAGGDHSCALKSDGTVWCW 223

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063713801 384 GWGRYGCLGHGNEECESVPKVVEGLSHVKAvhVATGDYTTFVVSDDGDVYSFGCGESASLGHhpsfdeqGNRhANVLSPT 463
Cdd:COG5184   224 GSNSSGQLGDGTTTDRATPVQVAGLTGVVA--IAAGGSHTCALKSDGTVWCWGDNSYGQLGD-------GTT-TDRSTPV 293

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1063713801 464 VVTSLKQVnermVQISLTNSiywnaHTFALTESGKLFAFGAGDQGQLGT 512
Cdd:COG5184   294 KVPGLSGV----VAVAAGSS-----HTCALLTDGTVWCWGDNAYGQLGD 333
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
377-426 4.43e-15

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 69.47  E-value: 4.43e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063713801 377 DGRVCTWGWGRYGCLGHGNEECESVPKVVEGLSHVKAVHVATGDYTTFVV 426
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 146-512 1.49e-62

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 208.29  E-value: 1.49e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063713801 146 SQAVAGPGHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQPVRSLQGVriIQAAAGAARTMLISDDGKVYACGKESFG 225
Cdd:COG5184     1 TQVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRVPGLSNV--VAVAAGGDHTCALKADGTVWCWGNNSYG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063713801 226 EAeygGQGTK-PVTTPQLVTSLKNifVVQAAIGNYFTAVLSREGKVYTFSWGNDGRLGHQTEAADVEPRPLLGPLENvpV 304
Cdd:COG5184    79 QL---GDGTTtDRTTPVKVPGLTG--VVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPVQVDAGLSG--V 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063713801 305 VQIAAGYCYLLALAcqPNGmSVYSVGCGLGGKLGHGSRTDEKYPRvieqfQILNLQP-RVVAAGAWHAAVVGQDGRVCTW 383
Cdd:COG5184   152 VAIAAGGYHTCALK--SDG-TVWCWGANSYGQLGDGTTTDRPTPV-----QVGGLSGvVAVAAGGDHSCALKSDGTVWCW 223

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063713801 384 GWGRYGCLGHGNEECESVPKVVEGLSHVKAvhVATGDYTTFVVSDDGDVYSFGCGESASLGHhpsfdeqGNRhANVLSPT 463
Cdd:COG5184   224 GSNSSGQLGDGTTTDRATPVQVAGLTGVVA--IAAGGSHTCALKSDGTVWCWGDNSYGQLGD-------GTT-TDRSTPV 293

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1063713801 464 VVTSLKQVnermVQISLTNSiywnaHTFALTESGKLFAFGAGDQGQLGT 512
Cdd:COG5184   294 KVPGLSGV----VAVAAGSS-----HTCALLTDGTVWCWGDNAYGQLGD 333
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 150-402 2.07e-36

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 138.19  E-value: 2.07e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063713801 150 AGPGHSVAVTSKGEVYTFGYNNSGQLGHGHTEDeaRIQPVRSLQGVR-IIQAAAGAARTMLISDDGKVYACGKESFGEAe 228
Cdd:COG5184   105 AGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTN--RLTPVQVDAGLSgVVAIAAGGYHTCALKSDGTVWCWGANSYGQL- 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063713801 229 ygGQGTKP-VTTPQLVTSLKNifVVQAAIGNYFTAVLSREGKVYTFSWGNDGRLGHQTEAADVEPRPLLGPlenVPVVQI 307
Cdd:COG5184   182 --GDGTTTdRPTPVQVGGLSG--VVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRATPVQVAGL---TGVVAI 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063713801 308 AAGY---CYLLAlacqpNGmSVYSVGCGLGGKLGHGSRTDEKYPRvieqfQILNLQP-RVVAAGAWHAAVVGQDGRVCTW 383
Cdd:COG5184   255 AAGGshtCALKS-----DG-TVWCWGDNSYGQLGDGTTTDRSTPV-----KVPGLSGvVAVAAGSSHTCALLTDGTVWCW 323

                         250
                  ....*....|....*....
gi 1063713801 384 GWGRYGCLGHGNEECESVP 402
Cdd:COG5184   324 GDNAYGQLGDGTTTDRSTP 342
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
377-426 4.43e-15

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 69.47  E-value: 4.43e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063713801 377 DGRVCTWGWGRYGCLGHGNEECESVPKVVEGLSHVKAVHVATGDYTTFVV 426
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
161-210 4.74e-11

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 57.91  E-value: 4.74e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063713801 161 KGEVYTFGYNNSGQLGHGHTEDEARIQPVRSLQGVRIIQAAAGAARTMLI 210
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
267-317 2.95e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 44.43  E-value: 2.95e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1063713801 267 EGKVYTFSWGNDGRLGHQTEAADVEPRPLLGpLENVPVVQIAAGYCYLLAL 317
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEG-LSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
213-264 7.42e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 43.27  E-value: 7.42e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1063713801 213 DGKVYacgkeSFGEAEYG--GQGT-KPVTTPQLVTSLKNIFVVQAAIGNYFTAVL 264
Cdd:pfam00415   1 DGRVY-----TWGRNDYGqlGLGTtENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
147-174 9.41e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 39.33  E-value: 9.41e-05
                          10        20
                  ....*....|....*....|....*...
gi 1063713801 147 QAVAGPGHSVAVTSKGEVYTFGYNNSGQ 174
Cdd:pfam13540   3 SVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
325-374 2.06e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 36.34  E-value: 2.06e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063713801 325 SVYSVGCGLGGKLGHGSRTDEKYPRVIEQFQILNLQprVVAAGAWHAAVV 374
Cdd:pfam00415   3 RVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVV--QVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
197-225 2.84e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 35.48  E-value: 2.84e-03
                          10        20
                  ....*....|....*....|....*....
gi 1063713801 197 IIQAAAGAARTMLISDDGKVYACGKESFG 225
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYG 29
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
414-440 4.93e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 34.71  E-value: 4.93e-03
                          10        20
                  ....*....|....*....|....*..
gi 1063713801 414 VHVATGDYTTFVVSDDGDVYSFGCGES 440
Cdd:pfam13540   2 VSVAAGDNHTLALTSDGRVYCWGDNSY 28
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
496-527 5.86e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 34.80  E-value: 5.86e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1063713801 496 SGKLFAFGAGDQGQLGTelgKNQKERCVPEKV 527
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGL---GTTENVLVPQKV 29
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
429-493 5.98e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 34.80  E-value: 5.98e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1063713801 429 DGDVYSFGCGESASLGHhpsfdeqGNRHaNVLSPTVVTSLKQVneRMVQISLTNSiywnaHTFAL 493
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGL-------GTTE-NVLVPQKVEGLSGN--KVVQVACGGD-----HTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
364-390 9.08e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 33.94  E-value: 9.08e-03
                          10        20
                  ....*....|....*....|....*..
gi 1063713801 364 VAAGAWHAAVVGQDGRVCTWGWGRYGC 390
Cdd:pfam13540   4 VAAGDNHTLALTSDGRVYCWGDNSYGQ 30
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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