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Conserved domains on  [gi|1063716471|ref|NP_001326325|]
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LOW protein: PPR containing protein [Arabidopsis thaliana]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000098)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 141-492 1.40e-19

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 92.63  E-value: 1.40e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471  141 EPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMkSVSDCKPDVFTFTV 220
Cdd:PLN03218   434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM-VNAGVEANVHTFGA 512

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471  221 LISCCCKLGRfdLVKS-----IvleMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADM-IEDGDSLPDVCTLNSIIG 294
Cdd:PLN03218   513 LIDGCARAGQ--VAKAfgaygI---MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMkAETHPIDPDHITVGALMK 587

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471  295 SYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEK 374
Cdd:PLN03218   588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471  375 MDDVFRKMKYQGVKPNSITYCSLVNAYSKAG-------LVVKIDSV-LRQIVNSdvvldtpfFNCIINAYGQAGDLATMK 446
Cdd:PLN03218   668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKnwkkaleLYEDIKSIkLRPTVST--------MNALITALCEGNQLPKAL 739

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*.
gi 1063716471  447 ELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMISSDI 492
Cdd:PLN03218   740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 141-492 1.40e-19

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 92.63  E-value: 1.40e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471  141 EPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMkSVSDCKPDVFTFTV 220
Cdd:PLN03218   434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM-VNAGVEANVHTFGA 512

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471  221 LISCCCKLGRfdLVKS-----IvleMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADM-IEDGDSLPDVCTLNSIIG 294
Cdd:PLN03218   513 LIDGCARAGQ--VAKAfgaygI---MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMkAETHPIDPDHITVGALMK 587

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471  295 SYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEK 374
Cdd:PLN03218   588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471  375 MDDVFRKMKYQGVKPNSITYCSLVNAYSKAG-------LVVKIDSV-LRQIVNSdvvldtpfFNCIINAYGQAGDLATMK 446
Cdd:PLN03218   668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKnwkkaleLYEDIKSIkLRPTVST--------MNALITALCEGNQLPKAL 739

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*.
gi 1063716471  447 ELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMISSDI 492
Cdd:PLN03218   740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 355-403 1.92e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 58.91  E-value: 1.92e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1063716471 355 TTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSK 403
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 251-280 3.56e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 46.29  E-value: 3.56e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 1063716471 251 VTYNTIIDGYGKAGMFEEMESVLADMIEDG 280
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 141-492 1.40e-19

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 92.63  E-value: 1.40e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471  141 EPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMkSVSDCKPDVFTFTV 220
Cdd:PLN03218   434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM-VNAGVEANVHTFGA 512

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471  221 LISCCCKLGRfdLVKS-----IvleMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADM-IEDGDSLPDVCTLNSIIG 294
Cdd:PLN03218   513 LIDGCARAGQ--VAKAfgaygI---MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMkAETHPIDPDHITVGALMK 587

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471  295 SYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEK 374
Cdd:PLN03218   588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471  375 MDDVFRKMKYQGVKPNSITYCSLVNAYSKAG-------LVVKIDSV-LRQIVNSdvvldtpfFNCIINAYGQAGDLATMK 446
Cdd:PLN03218   668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKnwkkaleLYEDIKSIkLRPTVST--------MNALITALCEGNQLPKAL 739

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*.
gi 1063716471  447 ELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMISSDI 492
Cdd:PLN03218   740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 141-419 2.26e-19

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 91.86  E-value: 2.26e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471  141 EPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSD-CKPDVFTFT 219
Cdd:PLN03218   504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHpIDPDHITVG 583

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471  220 VLISCCCKLGRFDLVK-----------------------------------SIVLEMSYLGVGCSTVTYNTIIDGYGKAG 264
Cdd:PLN03218   584 ALMKACANAGQVDRAKevyqmiheynikgtpevytiavnscsqkgdwdfalSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471  265 MFEEMESVLADMIEDGDSLPDVcTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVM 344
Cdd:PLN03218   664 DLDKAFEILQDARKQGIKLGTV-SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471  345 DFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLV--------NAYSKAGLVVKIDSVLRQ 416
Cdd:PLN03218   743 SEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITglclrrfeKACALGEPVVSFDSGRPQ 822


                   ...
gi 1063716471  417 IVN 419
Cdd:PLN03218   823 IEN 825
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 175-442 2.98e-19

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 91.48  E-value: 2.98e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471  175 LKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSvSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYN 254
Cdd:PLN03218   433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQE-AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471  255 TIIDGYGKAGMfeemesvladmiedgdslpdvctLNSIIGSYGNGRNMRkmeswysrfqlmgVQPDITTFNILILSFGKA 334
Cdd:PLN03218   512 ALIDGCARAGQ-----------------------VAKAFGAYGIMRSKN-------------VKPDRVVFNALISACGQS 555

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471  335 GMYKKMCSVMDFM--EKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDS 412
Cdd:PLN03218   556 GAVDRAFDVLAEMkaETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635

                          250       260       270
                   ....*....|....*....|....*....|
gi 1063716471  413 VLRQIVNSDVVLDTPFFNCIINAYGQAGDL 442
Cdd:PLN03218   636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 311-492 2.34e-13

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 72.99  E-value: 2.34e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471  311 RFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPN 390
Cdd:PLN03218   427 RFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN 506

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471  391 SITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGD-------LATMKElyiqmEERKCKPDKIT 463
Cdd:PLN03218   507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAvdrafdvLAEMKA-----ETHPIDPDHIT 581

                          170       180
                   ....*....|....*....|....*....
gi 1063716471  464 FATMIKTYTAHGIFDAVQELEKQMISSDI 492
Cdd:PLN03218   582 VGALMKACANAGQVDRAKEVYQMIHEYNI 610
PLN03077 PLN03077
Protein ECB2; Provisional
 144-460 1.36e-12

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 70.26  E-value: 1.36e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 144 CKTYTKLFKVLGNCKQpdqASLLFEVMlseglkPTIDV--YTSLISVYGKSELLDKAFSTLEYMKsVSDCKPDVFTFTVL 221
Cdd:PLN03077  326 CNSLIQMYLSLGSWGE---AEKVFSRM------ETKDAvsWTAMISGYEKNGLPDKALETYALME-QDNVSPDEITIASV 395

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 222 ISCCCKLGRFDlvKSIVLE--------MSYLgvgcstVTYNTIIDGYGKAGMFEEMESVLADMIEDgdslpDVCTLNSII 293
Cdd:PLN03077  396 LSACACLGDLD--VGVKLHelaerkglISYV------VVANALIEMYSKCKCIDKALEVFHNIPEK-----DVISWTSII 462

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 294 GsyGNGRNMRKMES-WYSRFQLMGVQPDITTF--------NILILSFGK--------AG-------------MYKKmCSV 343
Cdd:PLN03077  463 A--GLRLNNRCFEAlIFFRQMLLTLKPNSVTLiaalsacaRIGALMCGKeihahvlrTGigfdgflpnalldLYVR-CGR 539

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 344 MDFMEKRFFSLT--TVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVK-IDSVLRQIVNS 420
Cdd:PLN03077  540 MNYAWNQFNSHEkdVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQgLEYFHSMEEKY 619

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1063716471 421 DVVLDTPFFNCIINAYGQAGDLatmKELYIQMEERKCKPD 460
Cdd:PLN03077  620 SITPNLKHYACVVDLLGRAGKL---TEAYNFINKMPITPD 656
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 121-478 4.31e-12

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 68.36  E-value: 4.31e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 121 ENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKA-- 198
Cdd:PLN03081  100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDArr 179

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 199 --------------------------FSTLEYMKSV----SDCKPDvfTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGC 248
Cdd:PLN03081  180 lfdempernlaswgtiigglvdagnyREAFALFREMwedgSDAEPR--TFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 249 STVTYNTIIDGYGKAGMFEEMESVLadmiedgDSLPDVCTL--NSIIGSYG-NGRNMRKMESWYSrFQLMGVQPDITTFN 325
Cdd:PLN03081  258 DTFVSCALIDMYSKCGDIEDARCVF-------DGMPEKTTVawNSMLAGYAlHGYSEEALCLYYE-MRDSGVSIDQFTFS 329

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 326 ILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQgvkpNSITYCSLVNAYSKAG 405
Cdd:PLN03081  330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHG 405

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1063716471 406 LVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQM-EERKCKPDKITFATMIKTYTAHGIFD 478
Cdd:PLN03081  406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMsENHRIKPRAMHYACMIELLGREGLLD 479
PLN03077 PLN03077
Protein ECB2; Provisional
 163-498 5.21e-12

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 68.34  E-value: 5.21e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 163 ASLLFEVMlseglkPTIDV--YTSLISVYGKSELLDKAFSTLEYMKSVSdCKPDVFTFTVLISCCCKLGRFDLVKSIVLE 240
Cdd:PLN03077  241 ARLVFDRM------PRRDCisWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHGY 313

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 241 MSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMiedgdSLPDVCTLNSIIGSY-GNGRNMRKMESwYSRFQLMGVQP 319
Cdd:PLN03077  314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM-----ETKDAVSWTAMISGYeKNGLPDKALET-YALMEQDNVSP 387

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 320 DITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVF-------------------- 379
Cdd:PLN03077  388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFhnipekdviswtsiiaglrl 467

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 380 -----------RKMKYQgVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGdlaTMKEL 448
Cdd:PLN03077  468 nnrcfealiffRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG---RMNYA 543

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063716471 449 YIQMEerKCKPDKITFATMIKTYTAHGIFDAVQELEKQMISSDIGKKRLT 498
Cdd:PLN03077  544 WNQFN--SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 355-403 1.92e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 58.91  E-value: 1.92e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1063716471 355 TTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSK 403
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 177-227 1.20e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 56.60  E-value: 1.20e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1063716471 177 PTIDVYTSLISVYGKSELLDKAFSTLEYMKSvSDCKPDVFTFTVLISCCCK 227
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKK-RGVKPNVYTYTILINGLCK 50
PLN03077 PLN03077
Protein ECB2; Provisional
 252-487 8.30e-10

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 61.40  E-value: 8.30e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 252 TYNTIIDGYGKAGMFEEMESVLADMIEDGDSlPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSF 331
Cdd:PLN03077  154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVR-PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 332 GKAGMYKKMCSVMDFMEKRffslTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKID 411
Cdd:PLN03077  233 VKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1063716471 412 SVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERkckpDKITFATMIKTYTAHGIFDAVQELEKQM 487
Cdd:PLN03077  309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALM 380
PLN03077 PLN03077
Protein ECB2; Provisional
 185-468 6.19e-09

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 58.71  E-value: 6.19e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 185 LISVYGKSELLDKAFSTLEYMKSVSdCKPDVFTF-TVLISCC----CKLGR----------FDLVKSIVLEMSYLGVGCS 249
Cdd:PLN03077  158 LVGGYAKAGYFDEALCLYHRMLWAG-VRPDVYTFpCVLRTCGgipdLARGRevhahvvrfgFELDVDVVNALITMYVKCG 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 250 TV----------------TYNTIIDGYGKAGMFEEMESVLADMIEDgDSLPDVCTLNSII---GSYGNGRNMRKMESWYS 310
Cdd:PLN03077  237 DVvsarlvfdrmprrdciSWNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVIsacELLGDERLGREMHGYVV 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 311 RfqlMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRffslTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPN 390
Cdd:PLN03077  316 K---TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1063716471 391 SITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERkckpDKITFATMI 468
Cdd:PLN03077  389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSII 462
PLN03077 PLN03077
Protein ECB2; Provisional
 161-400 1.09e-08

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 57.94  E-value: 1.09e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 161 DQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKA----------------------------FSTLEYMKS-VSDC 211
Cdd:PLN03077  406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAlevfhnipekdviswtsiiaglrlnnrcFEALIFFRQmLLTL 485

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 212 KPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGmfeEMESVLADMiedGDSLPDVCTLNS 291
Cdd:PLN03077  486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG---RMNYAWNQF---NSHEKDVVSWNI 559

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 292 IIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVT-YNIVIETFGKAG 370
Cdd:PLN03077  560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKhYACVVDLLGRAG 639

                         250       260       270
                  ....*....|....*....|....*....|
gi 1063716471 371 RIEKMDDVFRKMKyqgVKPNSITYCSLVNA 400
Cdd:PLN03077  640 KLTEAYNFINKMP---ITPDPAVWGALLNA 666
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 213-262 3.73e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 49.67  E-value: 3.73e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063716471 213 PDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGK 262
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 429-471 3.32e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 46.97  E-value: 3.32e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1063716471 429 FNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTY 471
Cdd:pfam13041   6 YNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 251-280 3.56e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 46.29  E-value: 3.56e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 1063716471 251 VTYNTIIDGYGKAGMFEEMESVLADMIEDG 280
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 249-298 4.45e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 46.59  E-value: 4.45e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063716471 249 STVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSlPDVCTLNSIIGSYGN 298
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVK-PNVYTYTILINGLCK 50
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 251-280 9.23e-07

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 45.15  E-value: 9.23e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 1063716471 251 VTYNTIIDGYGKAGMFEEMESVLADMIEDG 280
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKG 30
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 319-368 1.30e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 45.05  E-value: 1.30e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063716471 319 PDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGK 368
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 357-391 2.18e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.98  E-value: 2.18e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1063716471 357 VTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNS 391
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 165-225 1.08e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 43.12  E-value: 1.08e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063716471 165 LLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSdCKPDVFTFTVLISCC 225
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKG-IKPTLDTYNAILGVI 60
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 236-298 1.13e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 43.12  E-value: 1.13e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063716471 236 SIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSlPDVCTLNSIIGSYGN 298
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIK-PTLDTYNAILGVIGG 62
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 316-486 2.16e-05

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 47.17  E-value: 2.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 316 GVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRffslTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITY- 394
Cdd:PLN03081  153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFv 228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 395 ----------------------------------CSLVNAYSKAGLVVKIDSVLRQIVNSDVVLdtpfFNCIINAYGQAG 440
Cdd:PLN03081  229 vmlrasaglgsaragqqlhccvlktgvvgdtfvsCALIDMYSKCGDIEDARCVFDGMPEKTTVA----WNSMLAGYALHG 304

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1063716471 441 DLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFdavqELEKQ 486
Cdd:PLN03081  305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL----EHAKQ 346
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 429-460 6.02e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.13  E-value: 6.02e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1063716471 429 FNCIINAYGQAGDLATMKELYIQMEERKCKPD 460
Cdd:TIGR00756   3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 342-403 8.56e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 40.42  E-value: 8.56e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1063716471 342 SVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSK 403
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 412-471 1.32e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 40.03  E-value: 1.32e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 412 SVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTY 471
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 211-232 2.54e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 38.10  E-value: 2.54e-04
                          10        20
                  ....*....|....*....|..
gi 1063716471 211 CKPDVFTFTVLISCCCKLGRFD 232
Cdd:pfam12854   3 LKPDVVTYNTLINGLCRAGRVD 24
PLN03077 PLN03077
Protein ECB2; Provisional
 348-483 2.75e-04

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 43.68  E-value: 2.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063716471 348 EKRFFSlttvtYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTP 427
Cdd:PLN03077  149 ERDLFS-----WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD 223

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1063716471 428 FFNCIINAYGQAGDLATMKELYIQMEERkckpDKITFATMIKTYTAHGIFDAVQEL 483
Cdd:PLN03077  224 VVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLEL 275
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 357-387 2.98e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 38.22  E-value: 2.98e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1063716471 357 VTYNIVIETFGKAGRIEKMDDVFRKMKYQGV 387
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 247-270 3.81e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 37.71  E-value: 3.81e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1063716471 247 GCS--TVTYNTIIDGYGKAG-------MFEEME 270
Cdd:pfam12854   2 GLKpdVVTYNTLINGLCRAGrvdeafeLLDEME 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 146-191 5.80e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 37.73  E-value: 5.80e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1063716471 146 TYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGK 191
Cdd:pfam13041   5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 141-191 7.67e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 37.72  E-value: 7.67e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1063716471 141 EPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGK 191
Cdd:pfam13812  12 QLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 316-368 1.88e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 36.57  E-value: 1.88e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1063716471 316 GVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGK 368
Cdd:pfam13812  10 GIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 352-383 3.25e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 35.01  E-value: 3.25e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1063716471 352 FSLTTVTYNIVIETFGKAGRIEKMDDVFRKMK 383
Cdd:pfam12854   3 LKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 315-348 3.31e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 35.01  E-value: 3.31e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1063716471 315 MGVQPDITTFNILILSFGKAGMYKKMCSVMDFME 348
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 173-206 3.38e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 35.01  E-value: 3.38e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1063716471 173 EGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMK 206
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 216-246 3.84e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 34.75  E-value: 3.84e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1063716471 216 FTFTVLISCCCKLGRFDLVKSIVLEMSYLGV 246
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 216-241 5.60e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 34.35  E-value: 5.60e-03
                          10        20
                  ....*....|....*....|....*.
gi 1063716471 216 FTFTVLISCCCKLGRFDLVKSIVLEM 241
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEM 26
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 212-262 8.91e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 34.64  E-value: 8.91e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1063716471 212 KPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGK 262
Cdd:pfam13812  12 QLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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