|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
371-1035 |
2.88e-140 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 442.75 E-value: 2.88e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 371 GLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYN 450
Cdd:PLN03077 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 451 IDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYV 530
Cdd:PLN03077 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYF 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 531 QDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARK 610
Cdd:PLN03077 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 611 VFSSLPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSeg 689
Cdd:PLN03077 345 VFSRMETKDAVSWTAMISGYEKNGLpDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS-- 422
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 690 eYLGI--SLLGMYMNSRGMTEACALFSELSSpKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDgVLPDQATFVTVLRVC 767
Cdd:PLN03077 423 -YVVVanALIEMYSKCKCIDKALEVFHNIPE-KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSAC 499
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 768 SVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRrsNVVSWNSLINGYAKNGYAEDALKIF 847
Cdd:PLN03077 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK--DVVSWNILLTGYVAHGKGSMAVELF 577
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 848 DSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDA 927
Cdd:PLN03077 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDP 657
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 928 RLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQRT 1007
Cdd:PLN03077 658 AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKV 737
|
650 660
....*....|....*....|....*...
gi 1063710337 1008 HIFAAGDKSHSEIGKIEMFLEDLYDLMK 1035
Cdd:PLN03077 738 HAFLTDDESHPQIKEINTVLEGFYEKMK 765
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
423-1047 |
1.31e-103 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 340.69 E-value: 1.31e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 423 AMIRGYAHNGESHKVMELFMDMKSSG-YNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKC 501
Cdd:PLN03081 92 SQIEKLVACGRHREALELFEILEAGCpFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 502 GALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMnlCGIVSDGA--CLASTLKACTHVHGLYQGKQVHCL 579
Cdd:PLN03081 172 GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREM--WEDGSDAEprTFVVMLRASAGLGSARAGQQLHCC 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 580 SVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSqnnleeavvlfqemltrgvnpseitfat 659
Cdd:PLN03081 250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA---------------------------- 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 660 iveachkpesltlgtqFHGqitkrgfssegeylgisllgmymnsrgmteacalfselsspksivlwtgmmsghsqngFYE 739
Cdd:PLN03081 302 ----------------LHG----------------------------------------------------------YSE 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 740 EALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMR 819
Cdd:PLN03081 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 820 RRsNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVA 899
Cdd:PLN03081 388 RK-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 900 CMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEK 979
Cdd:PLN03081 467 CMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAE 546
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1063710337 980 ANALRKVMRDRGVKKVPGYSWIDVEQRTHIFAAGDKSHS---EI-GKIEMFLEDLYDL--MKDDAVVNPDIVEQ 1047
Cdd:PLN03081 547 AAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPqsrEIyQKLDELMKEISEYgyVAEENELLPDVDED 620
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
101-616 |
6.13e-60 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 221.65 E-value: 6.13e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 101 LRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFEN 179
Cdd:PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMpRRDCISWNAMISGYFENGECLEGLELFFTMREL 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 180 QIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFS 259
Cdd:PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 260 GYVKAGLPEEAVLVFERMRDEGHRPDHLafvtvintyirlgklkdarllfgemsspdvvawnvmisghgkrgcetvaiey 339
Cdd:PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDEI---------------------------------------------------- 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 340 ffnmrkssvkstrsTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDV 419
Cdd:PLN03077 391 --------------TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 420 FWNAMIRGYAHNGESHKVMELFMDMKSSgYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYA 499
Cdd:PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 500 KCGALEDARQIFErMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQV-HC 578
Cdd:PLN03077 536 RCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYfHS 614
|
490 500 510
....*....|....*....|....*....|....*...
gi 1063710337 579 LSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLP 616
Cdd:PLN03077 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
220-718 |
7.91e-52 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 194.70 E-value: 7.91e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 220 SYCGGalVDMYAKCDRISDARRVFE-------WIVDPNTvcWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTV 292
Cdd:PLN03081 89 SLCSQ--IEKLVACGRHREALELFEileagcpFTLPAST--YDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 293 INTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGL 372
Cdd:PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 373 VVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNID 452
Cdd:PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 453 DFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQD 532
Cdd:PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 533 ENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQV-HCLSVKCGLD-RDLHTgSSLIDMYSKCGIIKDARK 610
Cdd:PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIfQSMSENHRIKpRAMHY-ACMIELLGREGLLDEAYA 483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 611 VFSSLPEWSVVSMNA--LIAGYSQNNLEEAVVLFQEMLTRGvnpseitfativeachkPESLtlgtqfhgqitkrgfsse 688
Cdd:PLN03081 484 MIRRAPFKPTVNMWAalLTACRIHKNLELGRLAAEKLYGMG-----------------PEKL------------------ 528
|
490 500 510
....*....|....*....|....*....|
gi 1063710337 689 GEYlgISLLGMYMNSRGMTEACALFSELSS 718
Cdd:PLN03081 529 NNY--VVLLNLYNSSGRQAEAAKVVETLKR 556
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
51-416 |
2.70e-42 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 165.81 E-value: 2.70e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 51 SPDLGRRIYGHVLPS----HDQIHQRLLEICLGQCKLFKSRKVFDEMPQR------------------------------ 96
Cdd:PLN03081 138 SIRCVKAVYWHVESSgfepDQYMMNRVLLMHVKCGMLIDARRLFDEMPERnlaswgtiigglvdagnyreafalfremwe 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 97 ---------LALALR---------IGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSML 157
Cdd:PLN03081 218 dgsdaeprtFVVMLRasaglgsarAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMpEKTTVAWNSML 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 158 SMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRIS 237
Cdd:PLN03081 298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 238 DARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMS---- 313
Cdd:PLN03081 378 DARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSenhr 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 314 -SPDVVAWNVMISGHGKRGCETVAIEYffnMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLAS-NIYVgs 391
Cdd:PLN03081 458 iKPRAMHYACMIELLGREGLLDEAYAM---IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKlNNYV-- 532
|
410 420
....*....|....*....|....*
gi 1063710337 392 SLVSMYSKCEKMEAAAKVFEALEEK 416
Cdd:PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKRK 557
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
102-472 |
1.15e-41 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 163.89 E-value: 1.15e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 102 RIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQ 180
Cdd:PLN03081 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMpERNLASWGTIIGGLVDAGNYREAFALFREMWEDG 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 181 IFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSG 260
Cdd:PLN03081 220 SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAG 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 261 YVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKdarllfgemsspdvvawnvmisgHGKRGcetvaieyf 340
Cdd:PLN03081 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE-----------------------HAKQA--------- 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 341 fnmrkssvkstrstlgsvlsaigivanldlglvvHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVF 420
Cdd:PLN03081 348 ----------------------------------HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS 393
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1063710337 421 WNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMG 472
Cdd:PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
102-526 |
7.35e-40 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 159.63 E-value: 7.35e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 102 RIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFLE-KDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQ 180
Cdd:PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMEtKDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 181 IFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSG 260
Cdd:PLN03077 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAG 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 261 YvkaglpeeavlvfermrdeghRPDHLAFVTVintyirlgklkdarllfgemsspdvvawnvmisghgkrgcetvaieYF 340
Cdd:PLN03077 465 L---------------------RLNNRCFEAL----------------------------------------------IF 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 341 FNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEAlEEKNDVF 420
Cdd:PLN03077 478 FRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-HEKDVVS 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 421 WNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQ-FHSIIIKKKLAKNLFVGNALVDMYA 499
Cdd:PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEyFHSMEEKYSITPNLKHYACVVDLLG 636
|
410 420
....*....|....*....|....*...
gi 1063710337 500 KCGALEDARQIFERM-CDRDNVTWNTII 526
Cdd:PLN03077 637 RAGKLTEAYNFINKMpITPDPAVWGALL 664
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
124-416 |
2.26e-23 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 106.86 E-value: 2.26e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 124 NAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSMLSmyssigkpGKVL--RSFVSLFENQ-----IFPNKFTFSIVLSTC 195
Cdd:PLN03077 428 NALIEMYSKCKCIDKALEVFHNIpEKDVISWTSIIA--------GLRLnnRCFEALIFFRqmlltLKPNSVTLIAALSAC 499
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 196 ARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEwIVDPNTVCWTCLFSGYVKAGLPEEAVLVFE 275
Cdd:PLN03077 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFN 578
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 276 RMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMS-----SPDVVAWNVMISGHGKRGCETVAIEYffnMRKSSVKS 350
Cdd:PLN03077 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEekysiTPNLKHYACVVDLLGRAGKLTEAYNF---INKMPITP 655
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1063710337 351 TRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVgSSLVSMYSKCEKMEAAAKVFEALEEK 416
Cdd:PLN03077 656 DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYY-ILLCNLYADAGKWDEVARVRKTMREN 720
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
100-260 |
1.59e-20 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 98.00 E-value: 1.59e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 100 ALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFLEKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFEN 179
Cdd:PLN03077 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 180 QIFPNKFTFSIVLSTCARETNVEFGRQIHCSM-IKMGLERNSYCGGALVDMYAKCDRISDARRVFEWI-VDPNTVCWTCL 257
Cdd:PLN03077 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMeEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMpITPDPAVWGAL 663
|
...
gi 1063710337 258 FSG 260
Cdd:PLN03077 664 LNA 666
|
|
| E_motif |
pfam20431 |
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ... |
940-1002 |
1.39e-18 |
|
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466580 [Multi-domain] Cd Length: 63 Bit Score: 80.67 E-value: 1.39e-18
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063710337 940 HGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWID 1002
Cdd:pfam20431 1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWIE 63
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
294-774 |
4.57e-13 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 73.76 E-value: 4.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 294 NTYIRLGKLKDARLLFGEMSSPDVVAwnVMISGHGK--RGCETV-AIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDL 370
Cdd:PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLD--MDKIYHAKffKACKKQrAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDG 455
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 371 GLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALE----EKNDVFWNAMIRGYAHNGESHKVMELFMDMKS 446
Cdd:PLN03218 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVnagvEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 447 SGYNIDDFTFTSLLSTCAAS------HDL--EMGSQFHSIiikkkLAKNLFVGnALVDMYAKCGALEDARQIFErMCDRD 518
Cdd:PLN03218 536 KNVKPDRVVFNALISACGQSgavdraFDVlaEMKAETHPI-----DPDHITVG-ALMKACANAGQVDRAKEVYQ-MIHEY 608
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 519 NV-----TWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGS 593
Cdd:PLN03218 609 NIkgtpeVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 594 SLIDMYSKCGIIKDARKVF----SSLPEWSVVSMNALIAGYSQ-NNLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPE 668
Cdd:PLN03218 689 SLMGACSNAKNWKKALELYedikSIKLRPTVSTMNALITALCEgNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 669 SLTLGTQFHGQITKRGFSSEgeyLGI--SLLGMYMnsRGMTEACALfselssPKSIVlwtGMMSG--HSQNGFYEEALKF 744
Cdd:PLN03218 769 DADVGLDLLSQAKEDGIKPN---LVMcrCITGLCL--RRFEKACAL------GEPVV---SFDSGrpQIENKWTSWALMV 834
|
490 500 510
....*....|....*....|....*....|
gi 1063710337 745 YKEMRHDGVLPdqatfvTVLRVCSVLSSLR 774
Cdd:PLN03218 835 YRETISAGTLP------TMEVLSQVLGCLQ 858
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
823-871 |
1.10e-11 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 60.45 E-value: 1.10e-11
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1063710337 823 NVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSH 871
Cdd:pfam13041 2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
188-535 |
1.21e-11 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 69.14 E-value: 1.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 188 FSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWI----VDPNTVCWTCLFSGYVK 263
Cdd:PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMrsknVKPDRVVFNALISACGQ 554
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 264 AGLPEEAVLVFERMRDEGH--RPDHLAFVTVINTYIRLGKLKDARLLFGEM------SSPDVvaWNVMISGHGKRGCETV 335
Cdd:PLN03218 555 SGAVDRAFDVLAEMKAETHpiDPDHITVGALMKACANAGQVDRAKEVYQMIheynikGTPEV--YTIAVNSCSQKGDWDF 632
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 336 AIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFE---A 412
Cdd:PLN03218 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEdikS 712
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 413 LEEKNDV-FWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVG 491
Cdd:PLN03218 713 IKLRPTVsTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMC 792
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1063710337 492 NALVDMyakCgaledaRQIFERMCDRDNVTWnTIIGSYVQDENE 535
Cdd:PLN03218 793 RCITGL---C------LRRFEKACALGEPVV-SFDSGRPQIENK 826
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
236-564 |
8.08e-11 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 66.44 E-value: 8.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 236 ISDARRVFEWI----VDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGE 311
Cdd:PLN03218 453 IDGALRVLRLVqeagLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 312 MSS----PDVVAWNVMISGHGKRGCETVAIEYFFNMRKSS--VKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLAS 385
Cdd:PLN03218 533 MRSknvkPDRVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 386 NIYVGSSLVSMYSKCEKMEAAAKVFEALEEK----NDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLS 461
Cdd:PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKgvkpDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 462 TCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALvdMYAKCGA--LEDARQIFERMcDRDNVTWNTIIGS--YVQDENESE 537
Cdd:PLN03218 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL--ITALCEGnqLPKALEVLSEM-KRLGLCPNTITYSilLVASERKDD 769
|
330 340 350
....*....|....*....|....*....|....*...
gi 1063710337 538 A---FDLFKRMNLCGIVSD--------GACLASTLKAC 564
Cdd:PLN03218 770 AdvgLDLLSQAKEDGIKPNlvmcrcitGLCLRRFEKAC 807
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
416-464 |
1.11e-09 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 54.68 E-value: 1.11e-09
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1063710337 416 KNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCA 464
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
619-666 |
3.16e-09 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 53.52 E-value: 3.16e-09
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1063710337 619 SVVSMNALIAGYSQNN-LEEAVVLFQEMLTRGVNPSEITFATIVEACHK 666
Cdd:pfam13041 2 DVVTYNTLINGYCKKGkVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
249-296 |
2.86e-08 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 50.82 E-value: 2.86e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1063710337 249 PNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTY 296
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
739-875 |
3.41e-08 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 57.96 E-value: 3.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 739 EEALKFYKEMRHdgvlPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEM 818
Cdd:PLN03218 423 KEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 819 RR---RSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKV 875
Cdd:PLN03218 499 VNagvEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
720-767 |
1.18e-07 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 48.90 E-value: 1.18e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1063710337 720 KSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVC 767
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
796-836 |
1.44e-07 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 48.90 E-value: 1.44e-07
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 1063710337 796 NTLIDMYAKCGDMKGSSQVFDEMRRRS---NVVSWNSLINGYAK 836
Cdd:pfam13041 7 NTLINGYCKKGKVEEAFKLFNEMKKRGvkpNVYTYTILINGLCK 50
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
825-855 |
1.06e-06 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 45.92 E-value: 1.06e-06
10 20 30
....*....|....*....|....*....|.
gi 1063710337 825 VSWNSLINGYAKNGYAEDALKIFDSMRQSHI 855
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
814-869 |
1.74e-06 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 46.20 E-value: 1.74e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1063710337 814 VFDEMRRRS---NVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTAC 869
Cdd:pfam13812 2 ILREMVRDGiqlNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
728-937 |
2.21e-06 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 51.80 E-value: 2.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 728 MMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCS----------VLSSLR-EGRAIhslifhlahDLDELTSN 796
Cdd:PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGqsgavdrafdVLAEMKaETHPI---------DPDHITVG 583
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 797 TLIDMYAKCGDMKGSSQVFdEMRRRSNVVS----WNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHA 872
Cdd:PLN03218 584 ALMKACANAGQVDRAKEVY-QMIHEYNIKGtpevYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1063710337 873 GKVSdgrKIFEMMigqygiearvdhvacmvdllgrwgylQEAddfiEAQNLKPDARLWSSLLGAC 937
Cdd:PLN03218 663 GDLD---KAFEIL--------------------------QDA----RKQGIKLGTVSYSSLMGAC 694
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
825-859 |
4.71e-06 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 43.98 E-value: 4.71e-06
10 20 30
....*....|....*....|....*....|....*
gi 1063710337 825 VSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDE 859
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| PPR_1 |
pfam12854 |
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ... |
823-851 |
5.83e-06 |
|
PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
Pssm-ID: 403914 [Multi-domain] Cd Length: 34 Bit Score: 43.87 E-value: 5.83e-06
10 20
....*....|....*....|....*....
gi 1063710337 823 NVVSWNSLINGYAKNGYAEDALKIFDSMR 851
Cdd:pfam12854 6 DVVTYNTLINGLCRAGRVDEAFELLDEME 34
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
252-285 |
7.04e-06 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 43.60 E-value: 7.04e-06
10 20 30
....*....|....*....|....*....|....
gi 1063710337 252 VCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPD 285
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
841-1043 |
9.28e-06 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 49.88 E-value: 9.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 841 EDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQyGIEARVDHVACMVDLLGRWGYLQEAddF--- 917
Cdd:PLN03218 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKA--Fgay 530
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 918 --IEAQNLKPDARLWSSLLGACRIHGD-----DIRGEISAEKLiELEPQNSSAYVLLSNIyASQGCWEKANALRKVMRDR 990
Cdd:PLN03218 531 giMRSKNVKPDRVVFNALISACGQSGAvdrafDVLAEMKAETH-PIDPDHITVGALMKAC-ANAGQVDRAKEVYQMIHEY 608
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1063710337 991 GVKKVPgyswidveqrtHIFAAGDKSHSEIGKIEmFLEDLYDLMKDDAVVnPD 1043
Cdd:PLN03218 609 NIKGTP-----------EVYTIAVNSCSQKGDWD-FALSIYDDMKKKGVK-PD 648
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
419-448 |
2.51e-05 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 42.07 E-value: 2.51e-05
10 20 30
....*....|....*....|....*....|
gi 1063710337 419 VFWNAMIRGYAHNGESHKVMELFMDMKSSG 448
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKG 30
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
723-756 |
2.81e-05 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 42.06 E-value: 2.81e-05
10 20 30
....*....|....*....|....*....|....
gi 1063710337 723 VLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPD 756
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
252-282 |
3.03e-05 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 41.68 E-value: 3.03e-05
10 20 30
....*....|....*....|....*....|.
gi 1063710337 252 VCWTCLFSGYVKAGLPEEAVLVFERMRDEGH 282
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
723-753 |
3.03e-05 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 41.68 E-value: 3.03e-05
10 20 30
....*....|....*....|....*....|.
gi 1063710337 723 VLWTGMMSGHSQNGFYEEALKFYKEMRHDGV 753
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
148-197 |
3.08e-05 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 42.35 E-value: 3.08e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1063710337 148 KDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCAR 197
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
421-453 |
1.51e-04 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 39.75 E-value: 1.51e-04
10 20 30
....*....|....*....|....*....|...
gi 1063710337 421 WNAMIRGYAHNGESHKVMELFMDMKSSGYNIDD 453
Cdd:TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
125-396 |
2.05e-04 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 45.64 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 125 AIVDLYAKCAQVSYAEKQFDFL-----EKDVTAWNSMLSmysSIGKPGKVLRSFVSLFE-----NQIFPNKFTFSIVLST 194
Cdd:PLN03218 512 ALIDGCARAGQVAKAFGAYGIMrsknvKPDRVVFNALIS---ACGQSGAVDRAFDVLAEmkaetHPIDPDHITVGALMKA 588
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 195 CARETNVEFGRQIHCSMIKMGLERNSYCGGALVDmyaKCDRISD---ARRVFEWI----VDPNTVCWTCLFSGYVKAGLP 267
Cdd:PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN---SCSQKGDwdfALSIYDDMkkkgVKPDEVFFSALVDVAGHAGDL 665
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 268 EEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSS----PDVVAWNVMISGHgkrgCE----TVAIEY 339
Cdd:PLN03218 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSiklrPTVSTMNALITAL----CEgnqlPKALEV 741
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1063710337 340 FFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSM 396
Cdd:PLN03218 742 LSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
823-983 |
2.93e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 43.84 E-value: 2.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 823 NVVSWNSLINGYAKNGYAEDALKIFDSMRQshIMPDEITFLGVL-TACSHAGKVSDGRKIFEMmigqyGIEARVDHVACM 901
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALE--LDPDDAEALYNLgLAYLRLGRYEEALADYEQ-----ALELDPDDAEAL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 902 VDL---LGRWGYLQEA-DDFIEAQNLKP-DARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGC 976
Cdd:COG0457 80 NNLglaLQALGRYEEAlEDYDKALELDPdDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159
|
....*..
gi 1063710337 977 WEKANAL 983
Cdd:COG0457 160 YEEALEL 166
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
284-329 |
3.26e-04 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 39.27 E-value: 3.26e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1063710337 284 PDHLAFVTVINTYIRLGKLKDARLLFGEMS----SPDVVAWNVMISGHGK 329
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKkrgvKPNVYTYTILINGLCK 50
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
904-988 |
5.69e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 41.33 E-value: 5.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 904 LLGRWGYLQEADDFI-EAQNLKPDARLWSSLLGACRIHGDDIRG-EISAEKLIELEPQNSSAYVLLSNIYASQGCWEKA- 980
Cdd:COG4783 13 ALLLAGDYDEAEALLeKALELDPDNPEAFALLGEILLQLGDLDEaIVLLHEALELDPDEPEARLNLGLALLKAGDYDEAl 92
|
....*...
gi 1063710337 981 NALRKVMR 988
Cdd:COG4783 93 ALLEKALK 100
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
520-550 |
8.13e-04 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 37.83 E-value: 8.13e-04
10 20 30
....*....|....*....|....*....|.
gi 1063710337 520 VTWNTIIGSYVQDENESEAFDLFKRMNLCGI 550
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
904-988 |
1.37e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 40.33 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 904 LLGRWGYLQEADDFIE-AQNLKPD-ARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKA- 980
Cdd:COG5010 63 LYNKLGDFEESLALLEqALQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAk 142
|
....*...
gi 1063710337 981 NALRKVMR 988
Cdd:COG5010 143 AALQRALG 150
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
621-650 |
1.59e-03 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 37.06 E-value: 1.59e-03
10 20 30
....*....|....*....|....*....|.
gi 1063710337 621 VSMNALIAGYSQN-NLEEAVVLFQEMLTRGV 650
Cdd:pfam01535 1 VTYNSLISGYCKNgKLEEALELFKEMKEKGI 31
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
905-988 |
1.75e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.60 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 905 LGRWgylQEA-DDFIEAQNLKPD-ARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKA-N 981
Cdd:COG4235 30 LGRY---DEAlAAYEKALRLDPDnADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAiA 106
|
....*..
gi 1063710337 982 ALRKVMR 988
Cdd:COG4235 107 AWQKLLA 113
|
|
| PPR_1 |
pfam12854 |
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ... |
247-278 |
1.90e-03 |
|
PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
Pssm-ID: 403914 [Multi-domain] Cd Length: 34 Bit Score: 36.55 E-value: 1.90e-03
10 20 30
....*....|....*....|....*....|..
gi 1063710337 247 VDPNTVCWTCLFSGYVKAGLPEEAVLVFERMR 278
Cdd:pfam12854 3 LKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
941-988 |
2.13e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.61 E-value: 2.13e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1063710337 941 GDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMR 988
Cdd:COG3063 6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALK 53
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
904-988 |
2.88e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.23 E-value: 2.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 904 LLGRWGYLQEA-DDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKA-N 981
Cdd:COG3063 1 LYLKLGDLEEAeEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEAlA 80
|
....*..
gi 1063710337 982 ALRKVMR 988
Cdd:COG3063 81 YLERALE 87
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
492-529 |
3.54e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 36.57 E-value: 3.54e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 1063710337 492 NALVDMYAKCGALEDARQIFERMCDR----DNVTWNTIIGSY 529
Cdd:pfam13041 7 NTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGL 48
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
517-553 |
3.79e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 36.19 E-value: 3.79e-03
10 20 30
....*....|....*....|....*....|....*..
gi 1063710337 517 RDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSD 553
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPN 37
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
905-988 |
4.55e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 39.99 E-value: 4.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063710337 905 LGRWgylQEA-DDFIEAQNLKPD-ARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKA-N 981
Cdd:COG0457 55 LGRY---EEAlADYEQALELDPDdAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAiE 131
|
....*..
gi 1063710337 982 ALRKVMR 988
Cdd:COG0457 132 AYERALE 138
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
923-988 |
5.03e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 39.99 E-value: 5.03e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1063710337 923 LKPD-ARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKA-NALRKVMR 988
Cdd:COG0457 3 LDPDdAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEAlADYEQALE 70
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
794-821 |
8.04e-03 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 34.75 E-value: 8.04e-03
10 20
....*....|....*....|....*...
gi 1063710337 794 TSNTLIDMYAKCGDMKGSSQVFDEMRRR 821
Cdd:pfam01535 2 TYNSLISGYCKNGKLEEALELFKEMKEK 29
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
520-553 |
8.10e-03 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 35.12 E-value: 8.10e-03
10 20 30
....*....|....*....|....*....|....
gi 1063710337 520 VTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSD 553
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
951-980 |
9.17e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 34.83 E-value: 9.17e-03
10 20 30
....*....|....*....|....*....|
gi 1063710337 951 EKLIELEPQNSSAYVLLSNIYASQGCWEKA 980
Cdd:pfam13431 3 LKALELDPNNADAYYNLAVLLLELGQSETA 32
|
|
| |
