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Conserved domains on  [gi|1063727426|ref|NP_001329025|]
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hypothetical protein (duplicated DUF1399) [Arabidopsis thaliana]

Protein Classification

glycine-rich domain-containing protein( domain architecture ID 18074126)

glycine-rich domain-containing protein similar to Arabidopsis thaliana glycine-rich domain-containing protein 1 and 2 (GRDP1/2), which are involved in development and stress responses

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GRDP-like pfam07173
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 98-238 2.41e-71

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


:

Pssm-ID: 429333  Cd Length: 139  Bit Score: 229.90  E-value: 2.41e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063727426  98 YKTDCEQFYGRVLDNSGVVSSVNGNCKSQTETLWKRLYPTEPYDLDFANAISEPADVSALEKCTTYDLVLAVKRQSPFFY 177
Cdd:pfam07173   1 YRSDCESLFGKIIDHPAIDSSNEEYAYSRTRELWLRLYPDEPFDLESNGLSDIINEVSGDSSSISYDLVSAVKRQRDFYY 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063727426 178 QVSRAHVDNDVFLQEAVARYKAFLYLIKGNRERSIklFCVPTYDIDLIWHTHQLHAISYCN 238
Cdd:pfam07173  81 QVSLPHYSDEVFLEAAVQRYKGFLYLLKRNPEEFS--FLVPTYDIDLIWHTHQLHPISYAK 139
GRDP-like super family cl42056
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 18-99 1.45e-06

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


The actual alignment was detected with superfamily member pfam07173:

Pssm-ID: 477928  Cd Length: 139  Bit Score: 48.47  E-value: 1.45e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063727426  18 DISVDLLAAAKKHLLFLGAVDR-NRClyDGPALQRAIYRYNAYwLPLLAQYTESSSICqgplVPPLDCEWVWHCHRLNPV 96
Cdd:pfam07173  63 SISYDLVSAVKRQRDFYYQVSLpHYS--DEVFLEAAVQRYKGF-LYLLKRNPEEFSFL----VPTYDIDLIWHTHQLHPI 135


                  ...
gi 1063727426  97 RYK 99
Cdd:pfam07173 136 SYA 138
 
Name Accession Description Interval E-value
GRDP-like pfam07173
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 98-238 2.41e-71

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


Pssm-ID: 429333  Cd Length: 139  Bit Score: 229.90  E-value: 2.41e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063727426  98 YKTDCEQFYGRVLDNSGVVSSVNGNCKSQTETLWKRLYPTEPYDLDFANAISEPADVSALEKCTTYDLVLAVKRQSPFFY 177
Cdd:pfam07173   1 YRSDCESLFGKIIDHPAIDSSNEEYAYSRTRELWLRLYPDEPFDLESNGLSDIINEVSGDSSSISYDLVSAVKRQRDFYY 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063727426 178 QVSRAHVDNDVFLQEAVARYKAFLYLIKGNRERSIklFCVPTYDIDLIWHTHQLHAISYCN 238
Cdd:pfam07173  81 QVSLPHYSDEVFLEAAVQRYKGFLYLLKRNPEEFS--FLVPTYDIDLIWHTHQLHPISYAK 139
GRDP-like pfam07173
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 18-99 1.45e-06

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


Pssm-ID: 429333  Cd Length: 139  Bit Score: 48.47  E-value: 1.45e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063727426  18 DISVDLLAAAKKHLLFLGAVDR-NRClyDGPALQRAIYRYNAYwLPLLAQYTESSSICqgplVPPLDCEWVWHCHRLNPV 96
Cdd:pfam07173  63 SISYDLVSAVKRQRDFYYQVSLpHYS--DEVFLEAAVQRYKGF-LYLLKRNPEEFSFL----VPTYDIDLIWHTHQLHPI 135


                  ...
gi 1063727426  97 RYK 99
Cdd:pfam07173 136 SYA 138
 
Name Accession Description Interval E-value
GRDP-like pfam07173
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 98-238 2.41e-71

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


Pssm-ID: 429333  Cd Length: 139  Bit Score: 229.90  E-value: 2.41e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063727426  98 YKTDCEQFYGRVLDNSGVVSSVNGNCKSQTETLWKRLYPTEPYDLDFANAISEPADVSALEKCTTYDLVLAVKRQSPFFY 177
Cdd:pfam07173   1 YRSDCESLFGKIIDHPAIDSSNEEYAYSRTRELWLRLYPDEPFDLESNGLSDIINEVSGDSSSISYDLVSAVKRQRDFYY 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063727426 178 QVSRAHVDNDVFLQEAVARYKAFLYLIKGNRERSIklFCVPTYDIDLIWHTHQLHAISYCN 238
Cdd:pfam07173  81 QVSLPHYSDEVFLEAAVQRYKGFLYLLKRNPEEFS--FLVPTYDIDLIWHTHQLHPISYAK 139
GRDP-like pfam07173
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 18-99 1.45e-06

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


Pssm-ID: 429333  Cd Length: 139  Bit Score: 48.47  E-value: 1.45e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063727426  18 DISVDLLAAAKKHLLFLGAVDR-NRClyDGPALQRAIYRYNAYwLPLLAQYTESSSICqgplVPPLDCEWVWHCHRLNPV 96
Cdd:pfam07173  63 SISYDLVSAVKRQRDFYYQVSLpHYS--DEVFLEAAVQRYKGF-LYLLKRNPEEFSFL----VPTYDIDLIWHTHQLHPI 135


                  ...
gi 1063727426  97 RYK 99
Cdd:pfam07173 136 SYA 138
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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