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Conserved domains on  [gi|1063727672|ref|NP_001329643|]
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Rer1 family protein [Arabidopsis thaliana]

Protein Classification

Rer1 family protein( domain architecture ID 10505457)

retention in endoplasmic reticulum sorting receptor 1 (Rer1) family protein such as human RER1, which is involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Rer1 pfam03248
Rer1 family; RER1 family protein are involved in involved in the retrieval of some endoplasmic ...
 17-181 5.12e-111

Rer1 family; RER1 family protein are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex.


:

Pssm-ID: 460860  Cd Length: 167  Bit Score: 313.70  E-value: 5.12e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063727672  17 QRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGFLSPLVDP--EAGGVSDG 94
Cdd:pfam03248   1 RWKHKLSRKYQHYLDKSTPHTKYRWIGFLVLLLLFLLRIYLVQGWYIVTYALGIYLLNLFIAFLTPKFDPslEQDELEDG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063727672  95 PSLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFS 174
Cdd:pfam03248  81 PSLPTKNDDEFRPFIRRLPEFKFWYSSTRATLIALFCTFFSIFDIPVFWPILLMYFIVLFVLTMRRQIKHMIKYKYVPFD 160


                  ....*..
gi 1063727672 175 FGKQKYG 181
Cdd:pfam03248 161 FGKKKYG 167
 
Name Accession Description Interval E-value
Rer1 pfam03248
Rer1 family; RER1 family protein are involved in involved in the retrieval of some endoplasmic ...
 17-181 5.12e-111

Rer1 family; RER1 family protein are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex.


Pssm-ID: 460860  Cd Length: 167  Bit Score: 313.70  E-value: 5.12e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063727672  17 QRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGFLSPLVDP--EAGGVSDG 94
Cdd:pfam03248   1 RWKHKLSRKYQHYLDKSTPHTKYRWIGFLVLLLLFLLRIYLVQGWYIVTYALGIYLLNLFIAFLTPKFDPslEQDELEDG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063727672  95 PSLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFS 174
Cdd:pfam03248  81 PSLPTKNDDEFRPFIRRLPEFKFWYSSTRATLIALFCTFFSIFDIPVFWPILLMYFIVLFVLTMRRQIKHMIKYKYVPFD 160


                  ....*..
gi 1063727672 175 FGKQKYG 181
Cdd:pfam03248 161 FGKKKYG 167
RER1 COG5249
Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion];
15-181 5.05e-65

Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion];


Pssm-ID: 227574  Cd Length: 180  Bit Score: 197.77  E-value: 5.05e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063727672  15 VQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDG 94
Cdd:COG5249    11 LITKMNDLKTLYQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYCLGIYLLNAFLAFLTPKFDMSFEQIEDD 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063727672  95 PSLP-TRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPF 173
Cdd:COG5249    91 DEIEeGEKDNEFRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDVPVFWPILVVYFIFLVFYTARRQIQHMKKYRYNPF 170


                  ....*...
gi 1063727672 174 SFGKQKYG 181
Cdd:COG5249   171 DIGKKKYK 178
 
Name Accession Description Interval E-value
Rer1 pfam03248
Rer1 family; RER1 family protein are involved in involved in the retrieval of some endoplasmic ...
 17-181 5.12e-111

Rer1 family; RER1 family protein are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex.


Pssm-ID: 460860  Cd Length: 167  Bit Score: 313.70  E-value: 5.12e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063727672  17 QRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGFLSPLVDP--EAGGVSDG 94
Cdd:pfam03248   1 RWKHKLSRKYQHYLDKSTPHTKYRWIGFLVLLLLFLLRIYLVQGWYIVTYALGIYLLNLFIAFLTPKFDPslEQDELEDG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063727672  95 PSLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFS 174
Cdd:pfam03248  81 PSLPTKNDDEFRPFIRRLPEFKFWYSSTRATLIALFCTFFSIFDIPVFWPILLMYFIVLFVLTMRRQIKHMIKYKYVPFD 160


                  ....*..
gi 1063727672 175 FGKQKYG 181
Cdd:pfam03248 161 FGKKKYG 167
RER1 COG5249
Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion];
15-181 5.05e-65

Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion];


Pssm-ID: 227574  Cd Length: 180  Bit Score: 197.77  E-value: 5.05e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063727672  15 VQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDG 94
Cdd:COG5249    11 LITKMNDLKTLYQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYCLGIYLLNAFLAFLTPKFDMSFEQIEDD 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063727672  95 PSLP-TRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPF 173
Cdd:COG5249    91 DEIEeGEKDNEFRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDVPVFWPILVVYFIFLVFYTARRQIQHMKKYRYNPF 170


                  ....*...
gi 1063727672 174 SFGKQKYG 181
Cdd:COG5249   171 DIGKKKYK 178
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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