NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1063736158|ref|NP_001330364|]
View 

polyadenylate-binding protein 1-B-binding protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
3a01205 super family cl36781
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
 124-178 6.40e-03

Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]


The actual alignment was detected with superfamily member TIGR00956:

Pssm-ID: 273362 [Multi-domain]  Cd Length: 1394  Bit Score: 38.55  E-value: 6.40e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063736158  124 LVLKRLFITF------LWVSLMMLVYNSVFL--LFLVVLIVAIDLQSVILAVFSMVVIFVLFL 178
Cdd:TIGR00956 1082 LVLWRTFQQYwrtpdyLYSKFFLTIFAALFIgfTFFKVGTSLQGLQNQMFAVFMATVLFNPLI 1144
 
Name Accession Description Interval E-value
3a01205 TIGR00956
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
 124-178 6.40e-03

Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]


Pssm-ID: 273362 [Multi-domain]  Cd Length: 1394  Bit Score: 38.55  E-value: 6.40e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063736158  124 LVLKRLFITF------LWVSLMMLVYNSVFL--LFLVVLIVAIDLQSVILAVFSMVVIFVLFL 178
Cdd:TIGR00956 1082 LVLWRTFQQYwrtpdyLYSKFFLTIFAALFIgfTFFKVGTSLQGLQNQMFAVFMATVLFNPLI 1144
 
Name Accession Description Interval E-value
3a01205 TIGR00956
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
 124-178 6.40e-03

Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]


Pssm-ID: 273362 [Multi-domain]  Cd Length: 1394  Bit Score: 38.55  E-value: 6.40e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1063736158  124 LVLKRLFITF------LWVSLMMLVYNSVFL--LFLVVLIVAIDLQSVILAVFSMVVIFVLFL 178
Cdd:TIGR00956 1082 LVLWRTFQQYwrtpdyLYSKFFLTIFAALFIgfTFFKVGTSLQGLQNQMFAVFMATVLFNPLI 1144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH