NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1063732622|ref|NP_001330398|]
View 

Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

Protein Classification

zinc finger CCCH domain-containing protein( domain architecture ID 10457906)

zinc finger CCCH domain-containing protein similar to Homo sapiens proline-rich protein 3 (PRR3)

CATH:  4.10.1000.10
Gene Ontology:  GO:0046872|GO:0003676
PubMed:  12665246|27990022
SCOP:  3001741

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
99-124 8.65e-08

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 47.96  E-value: 8.65e-08
                          10        20
                  ....*....|....*....|....*.
gi 1063732622  99 GQPVCQHFMRTGTCKFGASCKYHHPR 124
Cdd:pfam00642   2 KTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
301-327 1.89e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 46.80  E-value: 1.89e-07
                          10        20
                  ....*....|....*....|....*..
gi 1063732622 301 PEQPECQYFMRTGDCKFGTSCRFHHPM 327
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
146-172 2.07e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 46.80  E-value: 2.07e-07
                          10        20
                  ....*....|....*....|....*..
gi 1063732622 146 PGEKECSYFMRTGQCKFGSTCRYHHPV 172
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
52-78 1.08e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 44.88  E-value: 1.08e-06
                          10        20
                  ....*....|....*....|....*..
gi 1063732622  52 PDEPDCIYYLRTGVCGYGSRCRFNHPR 78
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
346-370 4.09e-05

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 40.25  E-value: 4.09e-05
                          10        20
                  ....*....|....*....|....*
gi 1063732622 346 PGAVPCTHFAQHGICKFGPACKFDH 370
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAH 25
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
99-124 8.65e-08

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 47.96  E-value: 8.65e-08
                          10        20
                  ....*....|....*....|....*.
gi 1063732622  99 GQPVCQHFMRTGTCKFGASCKYHHPR 124
Cdd:pfam00642   2 KTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
301-327 1.89e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 46.80  E-value: 1.89e-07
                          10        20
                  ....*....|....*....|....*..
gi 1063732622 301 PEQPECQYFMRTGDCKFGTSCRFHHPM 327
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
146-172 2.07e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 46.80  E-value: 2.07e-07
                          10        20
                  ....*....|....*....|....*..
gi 1063732622 146 PGEKECSYFMRTGQCKFGSTCRYHHPV 172
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
52-78 1.08e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 44.88  E-value: 1.08e-06
                          10        20
                  ....*....|....*....|....*..
gi 1063732622  52 PDEPDCIYYLRTGVCGYGSRCRFNHPR 78
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
346-370 4.09e-05

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 40.25  E-value: 4.09e-05
                          10        20
                  ....*....|....*....|....*
gi 1063732622 346 PGAVPCTHFAQHGICKFGPACKFDH 370
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAH 25
ZnF_C3H1 smart00356
zinc finger;
99-124 6.22e-04

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 36.84  E-value: 6.22e-04
                           10        20
                   ....*....|....*....|....*.
gi 1063732622   99 GQPVCQHFmRTGTCKFGASCKYHHPR 124
Cdd:smart00356   3 KTELCKFF-KRGYCPRGDRCKFAHPL 27
ZnF_C3H1 smart00356
zinc finger;
145-171 1.02e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 36.45  E-value: 1.02e-03
                           10        20
                   ....*....|....*....|....*..
gi 1063732622  145 RPGEKECSYFmRTGQCKFGSTCRYHHP 171
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHP 26
ZnF_C3H1 smart00356
zinc finger;
300-327 5.09e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 34.53  E-value: 5.09e-03
                           10        20
                   ....*....|....*....|....*...
gi 1063732622  300 RPEQPECQYFmRTGDCKFGTSCRFHHPM 327
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHPL 27
ZnF_C3H1 smart00356
zinc finger;
345-370 9.36e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 33.76  E-value: 9.36e-03
                           10        20
                   ....*....|....*....|....*.
gi 1063732622  345 RPGAVPCTHFaQHGICKFGPACKFDH 370
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAH 25
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
99-124 8.65e-08

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 47.96  E-value: 8.65e-08
                          10        20
                  ....*....|....*....|....*.
gi 1063732622  99 GQPVCQHFMRTGTCKFGASCKYHHPR 124
Cdd:pfam00642   2 KTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
301-327 1.89e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 46.80  E-value: 1.89e-07
                          10        20
                  ....*....|....*....|....*..
gi 1063732622 301 PEQPECQYFMRTGDCKFGTSCRFHHPM 327
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
146-172 2.07e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 46.80  E-value: 2.07e-07
                          10        20
                  ....*....|....*....|....*..
gi 1063732622 146 PGEKECSYFMRTGQCKFGSTCRYHHPV 172
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
52-78 1.08e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 44.88  E-value: 1.08e-06
                          10        20
                  ....*....|....*....|....*..
gi 1063732622  52 PDEPDCIYYLRTGVCGYGSRCRFNHPR 78
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
346-370 4.09e-05

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 40.25  E-value: 4.09e-05
                          10        20
                  ....*....|....*....|....*
gi 1063732622 346 PGAVPCTHFAQHGICKFGPACKFDH 370
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAH 25
ZnF_C3H1 smart00356
zinc finger;
99-124 6.22e-04

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 36.84  E-value: 6.22e-04
                           10        20
                   ....*....|....*....|....*.
gi 1063732622   99 GQPVCQHFmRTGTCKFGASCKYHHPR 124
Cdd:smart00356   3 KTELCKFF-KRGYCPRGDRCKFAHPL 27
ZnF_C3H1 smart00356
zinc finger;
145-171 1.02e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 36.45  E-value: 1.02e-03
                           10        20
                   ....*....|....*....|....*..
gi 1063732622  145 RPGEKECSYFmRTGQCKFGSTCRYHHP 171
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHP 26
ZnF_C3H1 smart00356
zinc finger;
300-327 5.09e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 34.53  E-value: 5.09e-03
                           10        20
                   ....*....|....*....|....*...
gi 1063732622  300 RPEQPECQYFmRTGDCKFGTSCRFHHPM 327
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHPL 27
ZnF_C3H1 smart00356
zinc finger;
345-370 9.36e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 33.76  E-value: 9.36e-03
                           10        20
                   ....*....|....*....|....*.
gi 1063732622  345 RPGAVPCTHFaQHGICKFGPACKFDH 370
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAH 25
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH