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Conserved domains on  [gi|1063736346|ref|NP_001330443|]
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Homeodomain-like superfamily protein [Arabidopsis thaliana]

Protein Classification

Myb family transcription factor( domain architecture ID 10019339)

Myb family transcription factor similar to phosphate starvation response (PSR) proteins that are involved in phosphate starvation signaling both in vascular plants and in unicellular algae

CATH:  1.20.58.1880
Gene Ontology:  GO:0003677|GO:0003700|GO:0006355
PubMed:  8882580|34200125|31084451
SCOP:  4000317

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
myb_SHAQKYF TIGR01557
myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain ...
 23-79 1.88e-23

myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.


:

Pssm-ID: 130620 [Multi-domain]  Cd Length: 57  Bit Score: 90.16  E-value: 1.88e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1063736346  23 KPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYRLGQ 79
Cdd:TIGR01557   1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57
Myb_CC_LHEQLE pfam14379
MYB-CC type transfactor, LHEQLE motif; This family is found towards the C-terminus of Myb-CC ...
 127-173 5.56e-19

MYB-CC type transfactor, LHEQLE motif; This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif.


:

Pssm-ID: 464160  Cd Length: 47  Bit Score: 78.03  E-value: 5.56e-19
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1063736346 127 PFAEAMRHQVDAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKS 173
Cdd:pfam14379   1 QITEALRMQMEVQKRLHEQLEVQKHLQLRIEAQGKYLQSILEKAQKT 47
 
Name Accession Description Interval E-value
myb_SHAQKYF TIGR01557
myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain ...
 23-79 1.88e-23

myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.


Pssm-ID: 130620 [Multi-domain]  Cd Length: 57  Bit Score: 90.16  E-value: 1.88e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1063736346  23 KPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYRLGQ 79
Cdd:TIGR01557   1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57
Myb_CC_LHEQLE pfam14379
MYB-CC type transfactor, LHEQLE motif; This family is found towards the C-terminus of Myb-CC ...
 127-173 5.56e-19

MYB-CC type transfactor, LHEQLE motif; This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif.


Pssm-ID: 464160  Cd Length: 47  Bit Score: 78.03  E-value: 5.56e-19
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1063736346 127 PFAEAMRHQVDAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKS 173
Cdd:pfam14379   1 QITEALRMQMEVQKRLHEQLEVQKHLQLRIEAQGKYLQSILEKAQKT 47
PLN03162 PLN03162
golden-2 like transcription factor; Provisional
 23-153 1.48e-13

golden-2 like transcription factor; Provisional


Pssm-ID: 178707 [Multi-domain]  Cd Length: 526  Bit Score: 70.20  E-value: 1.48e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736346  23 KPRLRWTADLHDRFVDAVAKLGgADKATPKSVLKLMGLKGLTLYHLKSHLQKYRlgqqqgkKQNRTEQNKENAGSSYVHF 102
Cdd:PLN03162  235 KAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYR-------SHRRHLAAREAEAASWTHR 306

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1063736346 103 DNCSQGGISNDSRFDnhqrqsgNVPFAEAMrHQVDAQQRFQEQLEVQKKLQ 153
Cdd:PLN03162  307 RAYTQAPWPRSSRRD-------GLPYLVPI-HTPHIQPRPSMAMAMQPQLQ 349
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 25-76 1.37e-07

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 47.11  E-value: 1.37e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1063736346  25 RLRWTADLHDRFVDAVAKLGGadkaTPKSVLKLMGlkGLTLYHLKSHLQKYR 76
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGN----RWKKIAKLLP--GRTDNQCKNRWQNYL 46
 
Name Accession Description Interval E-value
myb_SHAQKYF TIGR01557
myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain ...
 23-79 1.88e-23

myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.


Pssm-ID: 130620 [Multi-domain]  Cd Length: 57  Bit Score: 90.16  E-value: 1.88e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1063736346  23 KPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYRLGQ 79
Cdd:TIGR01557   1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57
Myb_CC_LHEQLE pfam14379
MYB-CC type transfactor, LHEQLE motif; This family is found towards the C-terminus of Myb-CC ...
 127-173 5.56e-19

MYB-CC type transfactor, LHEQLE motif; This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif.


Pssm-ID: 464160  Cd Length: 47  Bit Score: 78.03  E-value: 5.56e-19
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1063736346 127 PFAEAMRHQVDAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKS 173
Cdd:pfam14379   1 QITEALRMQMEVQKRLHEQLEVQKHLQLRIEAQGKYLQSILEKAQKT 47
PLN03162 PLN03162
golden-2 like transcription factor; Provisional
 23-153 1.48e-13

golden-2 like transcription factor; Provisional


Pssm-ID: 178707 [Multi-domain]  Cd Length: 526  Bit Score: 70.20  E-value: 1.48e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736346  23 KPRLRWTADLHDRFVDAVAKLGgADKATPKSVLKLMGLKGLTLYHLKSHLQKYRlgqqqgkKQNRTEQNKENAGSSYVHF 102
Cdd:PLN03162  235 KAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYR-------SHRRHLAAREAEAASWTHR 306

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1063736346 103 DNCSQGGISNDSRFDnhqrqsgNVPFAEAMrHQVDAQQRFQEQLEVQKKLQ 153
Cdd:PLN03162  307 RAYTQAPWPRSSRRD-------GLPYLVPI-HTPHIQPRPSMAMAMQPQLQ 349
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 25-76 1.37e-07

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 47.11  E-value: 1.37e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1063736346  25 RLRWTADLHDRFVDAVAKLGGadkaTPKSVLKLMGlkGLTLYHLKSHLQKYR 76
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGN----RWKKIAKLLP--GRTDNQCKNRWQNYL 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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