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Conserved domains on  [gi|1063736528|ref|NP_001330777|]
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protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein [Arabidopsis thaliana]

Protein Classification

disease resistance family protein( domain architecture ID 1000118)

disease resistance family protein similar to Nicotiana glutinosa TMV resistance protein N; resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein

Gene Ontology:  GO:0006952

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PLN03210 super family cl33662
Resistant to P. syringae 6; Provisional
 11-293 2.24e-65

Resistant to P. syringae 6; Provisional


The actual alignment was detected with superfamily member PLN03210:

Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 226.29  E-value: 2.24e-65
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736528   11 CSRLKCVSLHISKLKHLEDALFPACGALNRVELSGSSSGMkADNIDTASSSLPQ-VELDFRECFNLDPETVLHQESiIFK 89
Cdd:PLN03210   879 CNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEV-AMATDNIHSKLPStVCINFINCFNLDQEALLQQQS-IFK 956

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736528   90 YMLFPGkEEVPSYFTYRTTGVSSLTIPLLHLPLSQPFFRFRVGALVTN-----VKHGKNIKVKCEFKDRFGNSFhvgsDD 164
Cdd:PLN03210   957 QLILSG-EEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSesffiISVSFDIQVCCRFIDRLGNHF----DS 1031

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736528  165 FYVYLLFTKSQKGSQMLtILDCCIPLNEGNASLAQGNyYDHVDINIHITESlgsfGSTSELKEWGIRLLEEDSSSAENql 244
Cdd:PLN03210  1032 PYQPHVFSVTKKGSHLV-IFDCCFPLNEDNAPLAELN-YDHVDIQFRLTNK----NSQLKLKGCGIRLSEDDSSLNNT-- 1103

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*....
gi 1063736528  245 gnpnstLPHVSEAEEGNMgyytpvqglVNEIEHNGESGDNNVETERSTK 293
Cdd:PLN03210  1104 ------LPNVEEADDDNP---------VNGSEHWEDCEDSALERESERT 1137
 
Name Accession Description Interval E-value
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 11-293 2.24e-65

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 226.29  E-value: 2.24e-65
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736528   11 CSRLKCVSLHISKLKHLEDALFPACGALNRVELSGSSSGMkADNIDTASSSLPQ-VELDFRECFNLDPETVLHQESiIFK 89
Cdd:PLN03210   879 CNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEV-AMATDNIHSKLPStVCINFINCFNLDQEALLQQQS-IFK 956

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736528   90 YMLFPGkEEVPSYFTYRTTGVSSLTIPLLHLPLSQPFFRFRVGALVTN-----VKHGKNIKVKCEFKDRFGNSFhvgsDD 164
Cdd:PLN03210   957 QLILSG-EEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSesffiISVSFDIQVCCRFIDRLGNHF----DS 1031

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736528  165 FYVYLLFTKSQKGSQMLtILDCCIPLNEGNASLAQGNyYDHVDINIHITESlgsfGSTSELKEWGIRLLEEDSSSAENql 244
Cdd:PLN03210  1032 PYQPHVFSVTKKGSHLV-IFDCCFPLNEDNAPLAELN-YDHVDIQFRLTNK----NSQLKLKGCGIRLSEDDSSLNNT-- 1103

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*....
gi 1063736528  245 gnpnstLPHVSEAEEGNMgyytpvqglVNEIEHNGESGDNNVETERSTK 293
Cdd:PLN03210  1104 ------LPNVEEADDDNP---------VNGSEHWEDCEDSALERESERT 1137
 
Name Accession Description Interval E-value
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 11-293 2.24e-65

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 226.29  E-value: 2.24e-65
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736528   11 CSRLKCVSLHISKLKHLEDALFPACGALNRVELSGSSSGMkADNIDTASSSLPQ-VELDFRECFNLDPETVLHQESiIFK 89
Cdd:PLN03210   879 CNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEV-AMATDNIHSKLPStVCINFINCFNLDQEALLQQQS-IFK 956

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736528   90 YMLFPGkEEVPSYFTYRTTGVSSLTIPLLHLPLSQPFFRFRVGALVTN-----VKHGKNIKVKCEFKDRFGNSFhvgsDD 164
Cdd:PLN03210   957 QLILSG-EEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSesffiISVSFDIQVCCRFIDRLGNHF----DS 1031

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063736528  165 FYVYLLFTKSQKGSQMLtILDCCIPLNEGNASLAQGNyYDHVDINIHITESlgsfGSTSELKEWGIRLLEEDSSSAENql 244
Cdd:PLN03210  1032 PYQPHVFSVTKKGSHLV-IFDCCFPLNEDNAPLAELN-YDHVDIQFRLTNK----NSQLKLKGCGIRLSEDDSSLNNT-- 1103

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*....
gi 1063736528  245 gnpnstLPHVSEAEEGNMgyytpvqglVNEIEHNGESGDNNVETERSTK 293
Cdd:PLN03210  1104 ------LPNVEEADDDNP---------VNGSEHWEDCEDSALERESERT 1137
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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