NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1063729591|ref|NP_001331896|]
View 

ion channel POLLUX-like protein, putative (DUF1012) [Arabidopsis thaliana]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Castor_Poll_mid super family cl47221
Castor and Pollux, part of voltage-gated ion channel; This family represents a short region in ...
 407-493 4.05e-40

Castor and Pollux, part of voltage-gated ion channel; This family represents a short region in the middle of largely plant proteins that belong to the TCDB:1.A.1.23.2 family of the voltage-gated ion channel superfamily, eg UniProtKB:Q5H8A6, Q5H8A5 and Q4VY51.


The actual alignment was detected with superfamily member pfam06241:

Pssm-ID: 428842 [Multi-domain]  Cd Length: 99  Bit Score: 142.89  E-value: 4.05e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063729591 407 ENSTSKLFVQCSRQKDLIKIYRHLLNYSKNVFNLCSFPNLTGMKYRQLRLGFQEVVVCGIL--RDGKVNFHPNDDEELME 484
Cdd:pfam06241   1 EDVISRLFVQCSRQKGLAKIYRDLLNFRKNEFYLKSWPQLQGMTYGDALLAFPEAVVCGIKvaRSGKIYLNPDDDEILQE 80


                  ....*....
gi 1063729591 485 TDKLLFIAP 493
Cdd:pfam06241  81 GDKLLVIAE 89
 
Name Accession Description Interval E-value
Castor_Poll_mid pfam06241
Castor and Pollux, part of voltage-gated ion channel; This family represents a short region in ...
 407-493 4.05e-40

Castor and Pollux, part of voltage-gated ion channel; This family represents a short region in the middle of largely plant proteins that belong to the TCDB:1.A.1.23.2 family of the voltage-gated ion channel superfamily, eg UniProtKB:Q5H8A6, Q5H8A5 and Q4VY51.


Pssm-ID: 428842 [Multi-domain]  Cd Length: 99  Bit Score: 142.89  E-value: 4.05e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063729591 407 ENSTSKLFVQCSRQKDLIKIYRHLLNYSKNVFNLCSFPNLTGMKYRQLRLGFQEVVVCGIL--RDGKVNFHPNDDEELME 484
Cdd:pfam06241   1 EDVISRLFVQCSRQKGLAKIYRDLLNFRKNEFYLKSWPQLQGMTYGDALLAFPEAVVCGIKvaRSGKIYLNPDDDEILQE 80


                  ....*....
gi 1063729591 485 TDKLLFIAP 493
Cdd:pfam06241  81 GDKLLVIAE 89
 
Name Accession Description Interval E-value
Castor_Poll_mid pfam06241
Castor and Pollux, part of voltage-gated ion channel; This family represents a short region in ...
 407-493 4.05e-40

Castor and Pollux, part of voltage-gated ion channel; This family represents a short region in the middle of largely plant proteins that belong to the TCDB:1.A.1.23.2 family of the voltage-gated ion channel superfamily, eg UniProtKB:Q5H8A6, Q5H8A5 and Q4VY51.


Pssm-ID: 428842 [Multi-domain]  Cd Length: 99  Bit Score: 142.89  E-value: 4.05e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063729591 407 ENSTSKLFVQCSRQKDLIKIYRHLLNYSKNVFNLCSFPNLTGMKYRQLRLGFQEVVVCGIL--RDGKVNFHPNDDEELME 484
Cdd:pfam06241   1 EDVISRLFVQCSRQKGLAKIYRDLLNFRKNEFYLKSWPQLQGMTYGDALLAFPEAVVCGIKvaRSGKIYLNPDDDEILQE 80


                  ....*....
gi 1063729591 485 TDKLLFIAP 493
Cdd:pfam06241  81 GDKLLVIAE 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH