|
Name |
Accession |
Description |
Interval |
E-value |
| CCCAP |
pfam15964 |
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ... |
1-608 |
0e+00 |
|
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.
Pssm-ID: 435040 [Multi-domain] Cd Length: 703 Bit Score: 773.31 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 1 MSPLRSLEHEETNMPTMHDLVHTINDQSQYIHHLEAEVKFCKEELSGMKNKIQVVVLENEGLQQQLKSQRQEETLREQTL 80
Cdd:pfam15964 93 LSPSRTSEDESSSLPTVHDLVPIINDQSQYIHHLEAEVKFCKEELSEMKQRVQVVVLENEKLQQELKSQTQEETLREQTL 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 81 LDASGNMHNSWITtGEDSGVGETSKRPFSHDNADFGKAASAGE----QLELEKLKLTYEEKCEIEESQLKFLRNDLAEYQ 156
Cdd:pfam15964 173 LDSSGNMQNSWCT-PEDSRVHQTSKRPASHNLAERLKSATTGEdekwRLELEKLKLLYEAKTEVLESQVKSLRKDLAESQ 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 157 RTCEDLKEQLKHKEFLLAANTCNRVGGLCLKCAQHEAVLSQTHTNVHMQTIERLVKERDDLMSALVSVRSSLADTQQREA 236
Cdd:pfam15964 252 KTCEDLKERLKHKESLVAASTSSRVGGLCLKCAQHEAVLAQTHTNVHMQTIERLTKERDDLMSALVSVRSSLAEAQQRES 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 237 SAYEQVKQVLQISEEANFEKTKALIQCDQLRKELERQAERLEKELASQQEKRAIEKDMMKKEITKEREYMGSKMLILSQN 316
Cdd:pfam15964 332 SAYEQVKQAVQMTEEANFEKTKALIQCEQLKSELERQKERLEKELASQQEKRAQEKEALRKEMKKEREELGATMLALSQN 411
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 317 IAQLEAQVEKVTKEKISAINQLEEIQSQLASREMDVTKVCGEMRYQLNKTNMEKDEAEKEHREFRAKTNRDLEIKDQEIE 396
Cdd:pfam15964 412 VAQLEAQVEKVTREKNSLVSQLEEAQKQLASQEMDVTKVCGEMRYQLNQTKMKKDEAEKEHREYRTKTGRQLEIKDQEIE 491
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 397 KLRIELDESKQHLEQEQQKAALAREECLRLTELLGESEHQLHLTRQEKDSIQQSFSKEAKAQALQAQQREQELTQKIQQM 476
Cdd:pfam15964 492 KLGLELSESKQRLEQAQQDAARAREECLKLTELLGESEHQLHLTRLEKESIQQSFSNEAKAQALQAQQREQELTQKMQQM 571
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 477 EAQHDKTENEQYLLLTSQNTFLTKLKEECCTLAKKLEQISQKTRSEIAQLSQEKRYTYDKLGKLQRRNEELEEQCVQHGR 556
Cdd:pfam15964 572 EAQHDKTVNEQYSLLTSQNTFIAKLKEECCTLAKKLEEITQKSRSEVEQLSQEKEYLQDRLEKLQKRNEELEEQCVQHGR 651
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 1176461396 557 VHETMKQRLRQLDKHSQATAQQLVQLLSKQNQLLLERQSLSEEVDRLRTQLP 608
Cdd:pfam15964 652 MHERMKQRLRQLDKHCQATAQQLVQLLSKQNQLFKERQNLTEEVQSLRSQVP 703
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
299-607 |
4.70e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 4.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 299 ITKEREYMGSKMLILSQNIAQLEAQVEKVT---KEKISAINQLEEIQSQLASREMDVTKVCGEMRYQLNKTNMEKDEAEK 375
Cdd:TIGR02168 661 ITGGSAKTNSSILERRREIEELEEKIEELEekiAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 376 EHREFRAKTNR----------DLEIKDQEIEKLRIELDESKQHLEQEQQKAALAREECLRLTELLGESEHQLHLTRQEKD 445
Cdd:TIGR02168 741 EVEQLEERIAQlskelteleaEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 446 SiQQSFSKEAKAQALQAQQREQELTQKIQQMEAQHDKTENEqyllLTSQNTFLTKLKEECCTLAKKLEQISQ---KTRSE 522
Cdd:TIGR02168 821 N-LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE----IEELEELIEELESELEALLNERASLEEalaLLRSE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 523 IAQLSQEKRYTYDKLGKLQRRNEELEEQCVQHGRVHETMKQRLRQLdkHSQATAQQLVQL---LSKQNQLLLERQSLSEE 599
Cdd:TIGR02168 896 LEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNL--QERLSEEYSLTLeeaEALENKIEDDEEEARRR 973
|
....*...
gi 1176461396 600 VDRLRTQL 607
Cdd:TIGR02168 974 LKRLENKI 981
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
267-595 |
6.72e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.18 E-value: 6.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 267 RKELERQAERLEK--ELASQQEKRAIE--------KDMMKKEITKEREYMGSKMLILSQNIAQLEAQVEKVTKEKISAIN 336
Cdd:COG1196 202 LEPLERQAEKAERyrELKEELKELEAEllllklreLEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELEL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 337 QLEEIQSQLASREMDVtkvcgemryqlnktnmEKDEAEKEHREFRAKTNRdleikdQEIEKLRIELDESKQHLEQEQQKA 416
Cdd:COG1196 282 ELEEAQAEEYELLAEL----------------ARLEQDIARLEERRRELE------ERLEELEEELAELEEELEELEEEL 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 417 ALAREECLRLTELLGESEHQLHLTRQEKDSIQQSFSKEAKAQALQAQQREQELTQKIQQMEAQHDKTENEQYLLLTsqnt 496
Cdd:COG1196 340 EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER---- 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 497 fLTKLKEECCTLAKKLEQISQKTRSEIAQLSQEKRytydKLGKLQRRNEELEEQCVQHGRVHETMKQRLRQLDKHSQATA 576
Cdd:COG1196 416 -LERLEEELEELEEALAELEEEEEEEEEALEEAAE----EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
330
....*....|....*....
gi 1176461396 577 QQLVQLLSKQNQLLLERQS 595
Cdd:COG1196 491 ARLLLLLEAEADYEGFLEG 509
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
313-607 |
4.21e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.48 E-value: 4.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 313 LSQNIAQLEAQVEKVTK-EKISAinQLEEIQSQLASREMDvtkvcgEMRYQLNKTNMEKDEAEKEHREFRAKtnrdLEIK 391
Cdd:COG1196 198 LERQLEPLERQAEKAERyRELKE--ELKELEAELLLLKLR------ELEAELEELEAELEELEAELEELEAE----LAEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 392 DQEIEKLRIELDESKQHLEQEQQKAALAREEclrltelLGESEHQLHLTRQEKDSIQQsfskeakaqalqaqqREQELTQ 471
Cdd:COG1196 266 EAELEELRLELEELELELEEAQAEEYELLAE-------LARLEQDIARLEERRRELEE---------------RLEELEE 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 472 KIQQMEAQHDKTENEQYLLLTSQNTFLTKLKEECCTLAKKLEQISQKTRSEIAQLSQEKRYTYDKLGKLQRRNEELEEQc 551
Cdd:COG1196 324 ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL- 402
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1176461396 552 VQHGRVHETMKQRLRQLDKHSQATAQQLVQLLSKQNQLLLERQSLSEEVDRLRTQL 607
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
265-568 |
2.03e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 2.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 265 QLRKeLERQAERLEKELASQQEKRAIEKDMMKKEITKEREymgsKMLILSQNIAQLEAQVEKVTKEKISAINQLEEIQSQ 344
Cdd:TIGR02168 201 QLKS-LERQAEKAERYKELKAELRELELALLVLRLEELRE----ELEELQEELKEAEEELEELTAELQELEEKLEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 345 LASREMDVTKVCGEMrYQLNKTNMEKDEAEKEHREFRAKTNRDLEIKDQEIEKLRIELDESKQHLEQEQQKAALAREECL 424
Cdd:TIGR02168 276 VSELEEEIEELQKEL-YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 425 RLTELLGESEHQLHLTRQEKDSIQQSFsKEAKAQALQAQQREQELTQKIQQMEAQHDKTENEQYLLLTSQNTFLTKLKEe 504
Cdd:TIGR02168 355 SLEAELEELEAELEELESRLEELEEQL-ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE- 432
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1176461396 505 ccTLAKKLEQISQKTRSEIAQLSQEKRYTYDKLGKLQRRNEELEEQCVQHGRVHETMKQRLRQL 568
Cdd:TIGR02168 433 --AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
240-572 |
2.13e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 2.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 240 EQVKQVLQISEEANFEKTKALIQCDQLRKELERQAERLEKELAsQQEKRAIEKDMMKKEITKEREYMGSKMLILSQNIAQ 319
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE-ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 320 LEAQVEKVTKEKISAINQLEEIQSQLASREMDVTkvcgEMRYQLNKTNMEKDEAEKEH---REFRAKTNRDLEIKDQEIE 396
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIE----QLKEELKALREALDELRAELtllNEEAANLRERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 397 KLRIELDESKQHLEQEQQKAALAREECLRLTELLGESEHQLHLTRQEKDSIQQsfskeakaQALQAQQREQELTQKIQQM 476
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE--------ALALLRSELEELSEELREL 906
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 477 EAQHDKTENEQYLLLTSQNTFLTKLKEECCTLAKKLEQISQKTRSEIAQLSQEKRYTYDKLGKLQRRNEELEEQCVQHGR 556
Cdd:TIGR02168 907 ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGP 986
|
330 340
....*....|....*....|...
gi 1176461396 557 VH-------ETMKQRLRQLDKHS 572
Cdd:TIGR02168 987 VNlaaieeyEELKERYDFLTAQK 1009
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
268-550 |
3.47e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 3.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 268 KELERQAERLEKELASQQEKraiekdmmKKEITKEREYMGSKMLILSQNIAQLEAQVEKVTKEKISAIN-QLEEIQSQLA 346
Cdd:TIGR02169 233 EALERQKEAIERQLASLEEE--------LEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKeKIGELEAEIA 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 347 SREMDVTKVCGEMR---YQLNKTNMEKDEAEKEHREFRAKTNRDLEIKDQ---EIEKLRIELDESKQHLEQEQQKAALAR 420
Cdd:TIGR02169 305 SLERSIAEKERELEdaeERLAKLEAEIDKLLAEIEELEREIEEERKRRDKlteEYAELKEELEDLRAELEEVDKEFAETR 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 421 EEclrltelLGESEHQLHLTRQEKDSIQQSFSKEAKAQALQAQQREqELTQKIQQMEAQHDKTENEqyllltsqntfLTK 500
Cdd:TIGR02169 385 DE-------LKDYREKLEKLKREINELKRELDRLQEELQRLSEELA-DLNAAIAGIEAKINELEEE-----------KED 445
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1176461396 501 LKEECCTLAKKLEQISQ---KTRSEIAQLSQEKRYTYDKLGKLQRRNEELEEQ 550
Cdd:TIGR02169 446 KALEIKKQEWKLEQLAAdlsKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ 498
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
189-468 |
7.95e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 7.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 189 AQHEAVLSQTHTNVHMQTIERLVKERDDLMSALVSVRSSLADTQQREASAYEQVKQVLQISEEANFEKTKALIQCDQLRK 268
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 269 ELERQAERLEKELASQQEKRAIEKDMMKKEITKEreymgskmlilsQNIAQLEAQVEKVTKEKISAINQLEEIQSQLASR 348
Cdd:COG1196 324 ELAELEEELEELEEELEELEEELEEAEEELEEAE------------AELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 349 EMDvtkvcgemRYQLNKTNMEKDEAEKEHREFRAKTNRDLEIKDQEIEKLRIELDESKQHLEQEQQKAALAREECLRLTE 428
Cdd:COG1196 392 LRA--------AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1176461396 429 LLGESEHQLHLTRQEKDSIQQSFSKEAKAQALQAQQREQE 468
Cdd:COG1196 464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
205-486 |
1.17e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 205 QTIERLVKERDDLMSALVSVRSSLADTQQREASAYEQVKQVLQISEEANFEKTKALIQCDQLRKELERQAERLEkELASQ 284
Cdd:TIGR02168 712 EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE-ELEAQ 790
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 285 QEKRAIEKDMMKKEITKEREYMGSkmliLSQNIAQLEAQVEKVTKEKISAINQLEEIQSQLASREMDVTKVCGEMryqln 364
Cdd:TIGR02168 791 IEQLKEELKALREALDELRAELTL----LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI----- 861
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 365 ktNMEKDEAEKEHREFRAKTNRdLEIKDQEIEKLRIELDESKQHLEQEQQKAALAREECLRLTELLGESEHQLHLTRQEK 444
Cdd:TIGR02168 862 --EELEELIEELESELEALLNE-RASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI 938
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1176461396 445 DSIQQSFSKEAKAQALQAQQREQELTQKIQQMEAQHDKTENE 486
Cdd:TIGR02168 939 DNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
313-550 |
6.44e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 6.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 313 LSQNIAQLEAQVEKVTKEKISAINQLEEIQSQLASREMdvtkvcgemryQLNKTNMEkdeaekehrefRAKTNRDLEIKD 392
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALAR-----------RIRALEQE-----------LAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 393 QEIEKLRIELDESKQHLEQeqQKAALAREECLRLTELLGESEHQLHLTRQEKdsIQQSFSKEAKAQALQAQQREQELTQK 472
Cdd:COG4942 90 KEIAELRAELEAQKEELAE--LLRALYRLGRQPPLALLLSPEDFLDAVRRLQ--YLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1176461396 473 IQQMEAQHDKTEnEQYLLLTSQNTFLTKLKEECCTLAKKLEQISQKTRSEIAQLSQEKRYTYDKLGKLQRRNEELEEQ 550
Cdd:COG4942 166 RAELEAERAELE-ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
322-607 |
1.74e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 1.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 322 AQVEKVTKEKISAINQLEEIQSQLASremdVTKVCGEMRYQLNKTNMEKDEAEKehreFRAKTNrdlEIKDQEIEKLRIE 401
Cdd:TIGR02168 165 AGISKYKERRKETERKLERTRENLDR----LEDILNELERQLKSLERQAEKAER----YKELKA---ELRELELALLVLR 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 402 LDESKQHLEQEQQKAALAREECLRLTELLGESEHQLHLTR---QEKDSIQQSFSKEAKAQALQAQQREQELTQKIQQMEA 478
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRlevSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 479 QHDKTENEQYLLLTSQNTfLTKLKEECCTLAKKLEQISQKTRSEIAQLSQEKRytydKLGKLQRRNEELEEQcvqhgrvH 558
Cdd:TIGR02168 314 LERQLEELEAQLEELESK-LDELAEELAELEEKLEELKEELESLEAELEELEA----ELEELESRLEELEEQ-------L 381
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1176461396 559 ETMKQRLRQLDKHSQATAQQLVQLLSKQNQLLLERQSLSEEVDRLRTQL 607
Cdd:TIGR02168 382 ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL 430
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
205-549 |
2.34e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 2.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 205 QTIERLVKERDDLMsalvsvRSSLADTQQREASAYEQVKQVlqisEEANFEKTKALIQCDQLRKELE---RQAERLEKEL 281
Cdd:TIGR02169 198 QQLERLRREREKAE------RYQALLKEKREYEGYELLKEK----EALERQKEAIERQLASLEEELEkltEEISELEKRL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 282 ASQQEKRaiekdmmkKEITKEREYMGS-KMLILSQNIAQLEAQVEKVTKEKISAINQLEEIQSQLASREMdvtkvcgemr 360
Cdd:TIGR02169 268 EEIEQLL--------EELNKKIKDLGEeEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEA---------- 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 361 yQLNKTNMEKDEAEKEHREFRaktnRDLEIKDQEIEKLRIELDESKQHLEQEQQKAALAREEclrltelLGESEHQLHLT 440
Cdd:TIGR02169 330 -EIDKLLAEIEELEREIEEER----KRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE-------LKDYREKLEKL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 441 RQEKDSIQQSFSKeakaqalqAQQREQELTQKIQQMEAQHDKTENEqyllltsqntfLTKLKEECCTLAKKLEQISQKTR 520
Cdd:TIGR02169 398 KREINELKRELDR--------LQEELQRLSEELADLNAAIAGIEAK-----------INELEEEKEDKALEIKKQEWKLE 458
|
330 340
....*....|....*....|....*....
gi 1176461396 521 SEIAQLSQEKRYTYDKLGKLQRRNEELEE 549
Cdd:TIGR02169 459 QLAADLSKYEQELYDLKEEYDRVEKELSK 487
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
224-379 |
3.21e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.69 E-value: 3.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 224 VRSSLADTQQREASayEQVKQVLQISE-EANFEKTKALIQC----DQLRKELERQAERLEKELASQQEKRAIEKDMMKKE 298
Cdd:PRK12704 24 VRKKIAEAKIKEAE--EEAKRILEEAKkEAEAIKKEALLEAkeeiHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 299 ---ITKEREYMGSKMLILSQNIAQLEAQVEKVTKEKISAINQLEEIqSQLAS---REMDVTKVCGEMRYQ----LNKTNM 368
Cdd:PRK12704 102 lelLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI-SGLTAeeaKEILLEKVEEEARHEaavlIKEIEE 180
|
170
....*....|..
gi 1176461396 369 E-KDEAEKEHRE 379
Cdd:PRK12704 181 EaKEEADKKAKE 192
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
382-603 |
4.96e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 4.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 382 AKTNRDLEIKDQEIEKLRIELDESKQHLEQ--------EQQKAALAREECLRLTELLGE---SEHQLHLTRQEKDSIQQS 450
Cdd:TIGR02169 173 EKALEELEEVEENIERLDLIIDEKRQQLERlrrerekaERYQALLKEKREYEGYELLKEkeaLERQKEAIERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 451 FSKeAKAQALQAQQREQELTQKIQQMEAQ-HDKTENEQYLL------LTSQNTFLTKLKEECCTLAKKLEQISQKTRSEI 523
Cdd:TIGR02169 253 LEK-LTEEISELEKRLEEIEQLLEELNKKiKDLGEEEQLRVkekigeLEAEIASLERSIAEKERELEDAEERLAKLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 524 AQLSQEKRYTYDKLGKLQRRNEELEEQCVQHGRVHETMKQRLRQLDKHSQATAQQLVQLLSKQNQLLLERQSLSEEVDRL 603
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
235-567 |
8.91e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.73 E-value: 8.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 235 EASAYEQVKQVLQISEEANFEKTKALIQCDQLRKELERQAERL---EKELASQQEKRAIEKDMMKKEITKEREYMGSKML 311
Cdd:pfam02463 160 EEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLkeqAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERI 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 312 ILSQNIAQLEAQVEKVTKEKISAINQLEEIQSQLASREMDVTKVCGEMRYQLNKTNMEKDEAEKEHREFRAKTNRDLEIK 391
Cdd:pfam02463 240 DLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKES 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 392 DQEIEKLRIELDESKQHLEQEQQKAALAREECLRLTELLGESEHQLHLTRQEKDSIQQSFSKEAKAQALQAQQREQELTQ 471
Cdd:pfam02463 320 EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELEL 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 472 KIQQMEAQHDKTENEQYLLLTSQNTFLTKLKEECCTLAKKLEQISQKTRSEIAQLSQEKRYTYDKLGKLQRRNEELEEQC 551
Cdd:pfam02463 400 KSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQL 479
|
330
....*....|....*.
gi 1176461396 552 VQHGRVHETMKQRLRQ 567
Cdd:pfam02463 480 VKLQEQLELLLSRQKL 495
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
205-421 |
1.28e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 205 QTIERLVKERDDLMSAlvsvRSSLADT-QQREA-----SAYEQVKQVLQISEEANFEKTKALIQCDQLRKEL-ERQAERL 277
Cdd:COG4913 225 EAADALVEHFDDLERA----HEALEDArEQIELlepirELAERYAAARERLAELEYLRAALRLWFAQRRLELlEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 278 EKELASQQEKRAIEKDMMKKEITKEREYMGSKMLILSQNIAQLEAQVEKVTKEKISAINQLEEIQSQLASREMDVT---K 354
Cdd:COG4913 301 RAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPasaE 380
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1176461396 355 VCGEMRYQLNKTNMEKDEAEKEHREFRAKTNRDLEIKDQEIEKLRIELDESKQ-----HLEQEQQKAALARE 421
Cdd:COG4913 381 EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERrksniPARLLALRDALAEA 452
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
316-607 |
2.69e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 2.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 316 NIAQLEAQVEKVTKEKISAINQLEEIQSQLASREMDVTKVCGEMryqlnktnmekDEAEKEHREFRaktnRDLEIKDQEI 395
Cdd:TIGR02169 668 FSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQEL-----------SDASRKIGEIE----KEIEQLEQEE 732
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 396 EKLRIELDESKQHLEQEQQKAALAREECLRLTELLGESEHQLHLTRQEKDSIQQSFSKEakaqalqaqqREQELTQKIQQ 475
Cdd:TIGR02169 733 EKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHS----------RIPEIQAELSK 802
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 476 MEAQHdkTENEQYLLLTSQNTfltklkeecctlaKKLEQISQKTRSEIAQLSQEKRYTYDKLGKLQRRNEELEEQCVQHG 555
Cdd:TIGR02169 803 LEEEV--SRIEARLREIEQKL-------------NRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELE 867
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1176461396 556 RVHETMKQRLRQLDKHSQATAQQLVQLLSKQNQLLLERQSLSEEVDRLRTQL 607
Cdd:TIGR02169 868 EELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
268-606 |
3.33e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 268 KELERQAERLEKELASQQ----EKRAIEKDMMKK--EITKEREYMGSKMLILSQNIAQLEAQVEKVTKEKISAINQLEEI 341
Cdd:TIGR02169 684 EGLKRELSSLQSELRRIEnrldELSQELSDASRKigEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKEL 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 342 QSQLASREMDVTKvcgemrYQLNKTNMEKDEAEKEHREFRAKTnrdleikdQEIEKLRIELDESKQHLEQE----QQKAA 417
Cdd:TIGR02169 764 EARIEELEEDLHK------LEEALNDLEARLSHSRIPEIQAEL--------SKLEEEVSRIEARLREIEQKlnrlTLEKE 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 418 LAREECLRLTELLGESEHQLHLTRQEKDSIQ------QSFSKEAKAQALQAQQREQELTQKIQQMEAQHDKTENEQYLLL 491
Cdd:TIGR02169 830 YLEKEIQELQEQRIDLKEQIKSIEKEIENLNgkkeelEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 492 TSQNTFLTKLKEECCTLAKKLEQISQKTRsEIAQLSQEKRYTYDkLGKLQRRNEELEEQCVQHGRVHetmkqrLRQLDKH 571
Cdd:TIGR02169 910 AQIEKKRKRLSELKAKLEALEEELSEIED-PKGEDEEIPEEELS-LEDVQAELQRVEEEIRALEPVN------MLAIQEY 981
|
330 340 350
....*....|....*....|....*....|....*
gi 1176461396 572 SQaTAQQLVQLLSKQNQLLLERQSLSEEVDRLRTQ 606
Cdd:TIGR02169 982 EE-VLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
381-607 |
3.36e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 3.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 381 RAKTNRDLEIKDQEIEKLRIELDESKQHLEQEQQKAALAREECLRLTELLGESEHQLHLTRQEKDSIQqsfsKEAKAQAL 460
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE----KEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 461 QAQQREQELTQKIQQMEAQHdktENEQYLLLTSQNTFLTKLKeecctLAKKLEQISQKTRSEIAQLSQEKRytydklgKL 540
Cdd:COG4942 98 ELEAQKEELAELLRALYRLG---RQPPLALLLSPEDFLDAVR-----RLQYLKYLAPARREQAEELRADLA-------EL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1176461396 541 QRRNEELEEQCVQHGRVHETMKQRLRQLDKHSQATAQQLVQLLSKQNQLLLERQSLSEEVDRLRTQL 607
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
205-422 |
4.48e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 4.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 205 QTIERLVKERDDLMSALVSVRSSLADTQQREASAYEQVKQVLQISEEANFEKTKALIQCDQLRKELERQAERLEKELASQ 284
Cdd:COG4942 34 QEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRAL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 285 QEKRAIEKDMMK------KEITKEREYMGSKMLILSQNIAQLEAQVEKVTKEKISAINQLEEIQSQLAsremdvtkvcge 358
Cdd:COG4942 114 YRLGRQPPLALLlspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLA------------ 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1176461396 359 mryQLNKTNMEKDEAEKEHREFRAKTNRDLEIKDQEIEKLRIELDESKQHLEQEQQKAALAREE 422
Cdd:COG4942 182 ---ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
381-595 |
1.08e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 381 RAKTNRDLEIKDQEIEKLRIELDESKQHLEQEQQK---------AALAREECLRLTELLGESEHQLHLTRQEKDSIQQSF 451
Cdd:COG3206 170 REEARKALEFLEEQLPELRKELEEAEAALEEFRQKnglvdlseeAKLLLQQLSELESQLAEARAELAEAEARLAALRAQL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 452 SKEAKAQALQAQQRE-QELTQKIQQMEAQhdktENEQYLLLTSQNTFLTKLKEEcctLAKKLEQISQKTRSEIAQLSQEK 530
Cdd:COG3206 250 GSGPDALPELLQSPViQQLRAQLAELEAE----LAELSARYTPNHPDVIALRAQ---IAALRAQLQQEAQRILASLEAEL 322
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1176461396 531 RYTYDKLGKLQRRNEELEEQCVQHGRVhetmKQRLRQLDKHSQATAQQLVQLLSKQNQLLLERQS 595
Cdd:COG3206 323 EALQAREASLQAQLAQLEARLAELPEL----EAELRRLEREVEVARELYESLLQRLEEARLAEAL 383
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
135-484 |
1.36e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.95 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 135 EEKCEIEESQLKFLRNDLAEYQRTCEDLKEQLKHKEFLLAAntcnrvgGLCLKCAQheavlsQTHTNVHMQTIERLVKER 214
Cdd:PRK02224 411 EDFLEELREERDELREREAELEATLRTARERVEEAEALLEA-------GKCPECGQ------PVEGSPHVETIEEDRERV 477
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 215 DDLMSALVSVRSSLADTQQREASAYEQVKQVLQISEEAnfEKTKALIQ-CDQLRKELERQAERLEkELASQQEKRAIEKD 293
Cdd:PRK02224 478 EELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLE--ERREDLEElIAERRETIEEKRERAE-ELRERAAELEAEAE 554
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 294 MMKKEITKEREYMGSKMlilsQNIAQLEAQVEKVTkekiSAINQLEEIQSQLASREmdvtkvcgemryqlnktnmEKDEA 373
Cdd:PRK02224 555 EKREAAAEAEEEAEEAR----EEVAELNSKLAELK----ERIESLERIRTLLAAIA-------------------DAEDE 607
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 374 EKEHREFRAKTNrdlEIKDQEIEKLRiELDESKQHLEQEQQKAAL--AREECLRLTELLGESEHQLHLTRQEKDSIQQSF 451
Cdd:PRK02224 608 IERLREKREALA---ELNDERRERLA-EKRERKRELEAEFDEARIeeAREDKERAEEYLEQVEEKLDELREERDDLQAEI 683
|
330 340 350
....*....|....*....|....*....|....*
gi 1176461396 452 SKEAKAQALQAQQREQ--ELTQKIQQMEAQHDKTE 484
Cdd:PRK02224 684 GAVENELEELEELRERreALENRVEALEALYDEAE 718
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
193-602 |
1.38e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.75 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 193 AVLSQTHTNVHMQTIERLVKERddlmsaLVSVRSSLADTQQREASAYEQVKQVlqiSEEANFEKTKALIQCDQLRKELER 272
Cdd:pfam12128 256 AELRLSHLHFGYKSDETLIASR------QEERQETSAELNQLLRTLDDQWKEK---RDELNGELSAADAAVAKDRSELEA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 273 QAERLEKELASQQEKRAIEKDMMK------KEITKEREYMGSKMLILSQNIAQLEAQVEKVTKEKISAIN-----QLEEI 341
Cdd:pfam12128 327 LEDQHGAFLDADIETAAADQEQLPswqselENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKdklakIREAR 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 342 QSQLASREMDVTKVCGEMRYQLNKTNMEKDEAEKEHRE-------------FRAKTNRDLEIKDQEIEKLRIEL------ 402
Cdd:pfam12128 407 DRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSrlgelklrlnqatATPELLLQLENFDERIERAREEQeaanae 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 403 ---------------DESKQHLEQEQQKAALAREECLRLTELLGESEHQL-HLTRQEKDSIQQSFSKEAKAQALQAQQRE 466
Cdd:pfam12128 487 verlqselrqarkrrDQASEALRQASRRLEERQSALDELELQLFPQAGTLlHFLRKEAPDWEQSIGKVISPELLHRTDLD 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 467 QELTQKIQQMEAQH-------DKTENEQYLLLTSQntfltkLKEEcctlAKKLEQISQKTRSEIAQLSQEKRYTYDKLGK 539
Cdd:pfam12128 567 PEVWDGSVGGELNLygvkldlKRIDVPEWAASEEE------LRER----LDKAEEALQSAREKQAAAEEQLVQANGELEK 636
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1176461396 540 LQRRnEELEEQCVQHGR--------VHETMKQRL-RQLDKHSQATAQQLVQLLSKQNQLLLERQSLSEEVDR 602
Cdd:pfam12128 637 ASRE-ETFARTALKNARldlrrlfdEKQSEKDKKnKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKE 707
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
215-366 |
1.53e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 41.19 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 215 DDLMSALVSVRSSLADTQQREASAYEQVKQVLQISE-EANFEKTKAliQCDQLRKELERQAERLEKELASQQEKRAIEkd 293
Cdd:COG1566 79 TDLQAALAQAEAQLAAAEAQLARLEAELGAEAEIAAaEAQLAAAQA--QLDLAQRELERYQALYKKGAVSQQELDEAR-- 154
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1176461396 294 mmkkeitkereymgSKMLILSQNIAQLEAQVEKvTKEKISAINQLEEIQSQLASREMDVTkvcgEMRYQLNKT 366
Cdd:COG1566 155 --------------AALDAAQAQLEAAQAQLAQ-AQAGLREEEELAAAQAQVAQAEAALA----QAELNLART 208
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
274-432 |
2.00e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.00 E-value: 2.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 274 AERLEKELASQQEKRAIEKDMMKKEITKEREymgskmlilsqNIAQLEAQVEKVTKEKISAINQLEEIQSQLASREMDVT 353
Cdd:COG2433 383 EELIEKELPEEEPEAEREKEHEERELTEEEE-----------EIRRLEEQVERLEAEVEELEAELEEKDERIERLERELS 451
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1176461396 354 KVcgemryqlnktnmeKDEAEKEHREfraktNRDLEIKDQEIEKLRIELDESKQHLEQEQQKaaLAREECLRLTELLGE 432
Cdd:COG2433 452 EA--------------RSEERREIRK-----DREISRLDREIERLERELEEERERIEELKRK--LERLKELWKLEHSGE 509
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
231-604 |
2.13e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.11 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 231 TQQREASAYEQVKQVLQISEEANFEKTKALIQCDQLRKELERQAERLEkelasqqEKRAIEKDMMKKEITKEREYMGSKM 310
Cdd:TIGR00618 223 VLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIE-------ELRAQEAVLEETQERINRARKAAPL 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 311 LILSQNIAQLEAQVEKVTKEKISAINQLEEIQSQLASREMDVTKVcGEMRYQLNKTNMEKDEAEKEHREfrAKTNRDLEI 390
Cdd:TIGR00618 296 AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSI-EEQRRLLQTLHSQEIHIRDAHEV--ATSIREISC 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 391 KDQEIEKLRIELDESKQHLEQEQQKAA-----LAREECLRLTELLGESEHQLHLTRQEKDSIQQSFSKEAKAQALQAQQR 465
Cdd:TIGR00618 373 QQHTLTQHIHTLQQQKTTLTQKLQSLCkeldiLQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQ 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 466 EQELTQKIQQMEAQHDKTENEQyllLTSQNTFLTKLKEECCTLAKKLEQISQKTRSEIAQLSQ--EKRYTYDKLGKLQRR 543
Cdd:TIGR00618 453 CEKLEKIHLQESAQSLKEREQQ---LQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHpnPARQDIDNPGPLTRR 529
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1176461396 544 NEELEEQCVQHGRVHETMKQRLRQLDKHSQATAQQLVQLLSKQNQLLLERQSLSEEVDRLR 604
Cdd:TIGR00618 530 MQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQ 590
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
118-607 |
2.66e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.08 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 118 AASAGEQLELEKLKLTYEEkceiEESQLKFLRNDLAEYQRTCEDLKEQLKHKEFLLAANTCNRVGglclkcAQHEAVLSQ 197
Cdd:COG1196 260 AELAELEAELEELRLELEE----LELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEE------LEEELAELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 198 THTNVHMQTIERLVKERDDLMSALVSVRSSLADTQQREASAYEQVKQVLQISEEANFEKTKALIQCDQLRKELERQAERL 277
Cdd:COG1196 330 EELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAE 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 278 EKELASQQEKRAIEKDMMKKEITKEREYMGSKMLILSQNIAQLEAQVEKVTKEKISAINQLEEIQSQLASREMDVTKVCG 357
Cdd:COG1196 410 EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 358 EMRYQLNKtNMEKDEAEKEHREFRAKTNRDLEIKDQEIEKLR-----------IELDESKQHLEQEQQKAALAREECL-- 424
Cdd:COG1196 490 AARLLLLL-EAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIgveaayeaaleAALAAALQNIVVEDDEVAAAAIEYLka 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 425 ----RLTELLGESEHQLHLTRQEKDSIQQSF----------SKEAKAQALQAQQREQELTQKIQQMEAQHDKTENEQYLL 490
Cdd:COG1196 569 akagRATFLPLDKIRARAALAAALARGAIGAavdlvasdlrEADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRE 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 491 LTSQNTFLTKLKEECCTLAKKLEQISQKTRSEIAQLSQEKRYTYDKLGKLQRRNEELEEQCVQHGRVHETMKQRLRQLDK 570
Cdd:COG1196 649 VTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEE 728
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1176461396 571 HSQATAQQLVQLLSKQNQLLLE-----------RQSLSEEVDRLRTQL 607
Cdd:COG1196 729 QLEAEREELLEELLEEEELLEEealeelpeppdLEELERELERLEREI 776
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
226-607 |
3.39e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.26 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 226 SSLADTQQREASAYEQVKQVLQISEEANFEKTKALIQCDQLRKELERQAERLEKELASQQEKRAiEKDMMKKEITKEREY 305
Cdd:pfam07888 34 NRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHE-ELEEKYKELSASSEE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 306 MGSKMLILSQNIAQLEAQvekvtkekisaINQLEEIQSQLASREMDVTKVCGEMRYQLNKTNMEKDEAEKEHREFRAKtn 385
Cdd:pfam07888 113 LSEEKDALLAQRAAHEAR-----------IRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAK-- 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 386 rdLEIKDQEIEKLRIELDESKQHLEQEQQKAALAREECLRLTELLGES---EHQLHLTRQEKDSIQQSFSKEAKAQALQA 462
Cdd:pfam07888 180 --LQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAhrkEAENEALLEELRSLQERLNASERKVEGLG 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 463 QQREQELTQKIQ-QMEAQHDKTENEQYLLLTSQNTFltKLKEECCTLAKK---LEQISQKTRSEIAQLSQEKRYTYDKLG 538
Cdd:pfam07888 258 EELSSMAAQRDRtQAELHQARLQAAQLTLQLADASL--ALREGRARWAQEretLQQSAEADKDRIEKLSAELQRLEERLQ 335
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1176461396 539 KLQRRNEELEeqcVQHGRVHETMKQRLRQLDKHSQATAQQLVQLLSKQNQLLLERQSLSEEVDRLRTQL 607
Cdd:pfam07888 336 EERMEREKLE---VELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRL 401
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
369-607 |
5.26e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 39.95 E-value: 5.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 369 EKDEAEKEHREFRAKTNRDLEIKDQEIEKLRIELDESKQHLEQEQQKAALAREECLRLTELLGESEHQLHLTRQEKDSIQ 448
Cdd:pfam02463 171 KKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQ 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 449 QSFSKEAKAQALQAQQREQELTQKIQQMEAQHDK------------TENEQYLLLTSQNTFLTKLKEECCTLAKKLEQIS 516
Cdd:pfam02463 251 EEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQeeelkllakeeeELKSELLKLERRKVDDEEKLKESEKEKKKAEKEL 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176461396 517 QKTRSEIAQLSQEKRYTYDKLGKLQRRNEELEEQCVQHGRVHETMKQRLRQLDKHSQATAQQLVQLLSKQNQLLLERQSL 596
Cdd:pfam02463 331 KKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLL 410
|
250
....*....|.
gi 1176461396 597 SEEVDRLRTQL 607
Cdd:pfam02463 411 LELARQLEDLL 421
|
|
| |
