NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1184725741|ref|NP_001337713|]
View 

protein misato homolog 1 isoform 12 [Homo sapiens]

Protein Classification

misato family protein( domain architecture ID 10149475)

misato family protein similar to human protein misato homolog 1 that regulates mitochondrial distribution and morphology, and is required for mitochondrial fusion and mitochondrial network formation

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
misato cd06060
Misato segment II tubulin-like domain; Human Misato shows similarity with Tubulin/FtsZ family ...
 7-382 8.08e-154

Misato segment II tubulin-like domain; Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.


:

Pssm-ID: 276964 [Multi-domain]  Cd Length: 539  Bit Score: 444.45  E-value: 8.08e-154
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741   7 EAGRLEAFGQGESVLKEPKYQEELEDRLHFYVEECDYLQGFQILCDLHDGFSGVGAKAAELLQDEYSGRGIITWGLLPGP 86
Cdd:cd06060   170 EFNPFDNFSQGEELFSDLEELEEFEDRLRFFVEECDSLQGFQILVDTDDGFGGVAAKLLENLRDEYGKKSILTPGLSPAS 249

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741  87 YHRGEAQRNIYRLLNTAFGLVHLTAHSSLVCPLSLGGSLGLRPEPPVSFPYLHYDatLPFHCSAILATALDTVTVPYRLC 166
Cdd:cd06060   250 PPDPDSQRRIKRLLNDALSLSSLSEHSSLFVPLSLPSLLWRKPGWPRTFPHLDYS--SPYHTSAVLAAALDTATLPYRLK 327

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741 167 SSPVSMVHLADMLSFCGKKVVTAGAIIPFPLAPGQSLPDSLMQFGGATPWTPlsacGEPSGTRCFAQSVVLRGIDRACHT 246
Cdd:cd06060   328 SSSVSMSDLCSSLTFSGRKVAALSLALPFPLLLGSSLLDSLQDLLGDLSLTP----SCQNETDVFAQSVVLRGIPESRLK 403

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741 247 SQltpgTPPPSALHACTTGEEILAQYLQQQQPGVMSSSHLLLTPCRVAPPYPHLFSSC-SPPGMVLDGSPKGA-AVESIP 324
Cdd:cd06060   404 SP----LQPRSPASRCSSVEEVLEGYLQCTFPGSSSAVTTLPQPLPVPTPFPSIFSPSlGRKGFLLDDSRPASlDVESVP 479

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1184725741 325 VFGALCSSSSLHQTLEALARDLTKLDLRRWASFMDAG-VEHDDVAELLQELQSLAQCYQ 382
Cdd:cd06060   480 VLASLQSSSALGPLLEELASEVEKLGLRKLHEFLGGGgLERDEFKESLEELLSLADCYG 538
 
Name Accession Description Interval E-value
misato cd06060
Misato segment II tubulin-like domain; Human Misato shows similarity with Tubulin/FtsZ family ...
 7-382 8.08e-154

Misato segment II tubulin-like domain; Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.


Pssm-ID: 276964 [Multi-domain]  Cd Length: 539  Bit Score: 444.45  E-value: 8.08e-154
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741   7 EAGRLEAFGQGESVLKEPKYQEELEDRLHFYVEECDYLQGFQILCDLHDGFSGVGAKAAELLQDEYSGRGIITWGLLPGP 86
Cdd:cd06060   170 EFNPFDNFSQGEELFSDLEELEEFEDRLRFFVEECDSLQGFQILVDTDDGFGGVAAKLLENLRDEYGKKSILTPGLSPAS 249

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741  87 YHRGEAQRNIYRLLNTAFGLVHLTAHSSLVCPLSLGGSLGLRPEPPVSFPYLHYDatLPFHCSAILATALDTVTVPYRLC 166
Cdd:cd06060   250 PPDPDSQRRIKRLLNDALSLSSLSEHSSLFVPLSLPSLLWRKPGWPRTFPHLDYS--SPYHTSAVLAAALDTATLPYRLK 327

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741 167 SSPVSMVHLADMLSFCGKKVVTAGAIIPFPLAPGQSLPDSLMQFGGATPWTPlsacGEPSGTRCFAQSVVLRGIDRACHT 246
Cdd:cd06060   328 SSSVSMSDLCSSLTFSGRKVAALSLALPFPLLLGSSLLDSLQDLLGDLSLTP----SCQNETDVFAQSVVLRGIPESRLK 403

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741 247 SQltpgTPPPSALHACTTGEEILAQYLQQQQPGVMSSSHLLLTPCRVAPPYPHLFSSC-SPPGMVLDGSPKGA-AVESIP 324
Cdd:cd06060   404 SP----LQPRSPASRCSSVEEVLEGYLQCTFPGSSSAVTTLPQPLPVPTPFPSIFSPSlGRKGFLLDDSRPASlDVESVP 479

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1184725741 325 VFGALCSSSSLHQTLEALARDLTKLDLRRWASFMDAG-VEHDDVAELLQELQSLAQCYQ 382
Cdd:cd06060   480 VLASLQSSSALGPLLEELASEVEKLGLRKLHEFLGGGgLERDEFKESLEELLSLADCYG 538
Tubulin_3 pfam14881
Tubulin domain; This family includes the tubulin alpha, beta and gamma chains, as well as the ...
 12-165 3.19e-18

Tubulin domain; This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Misato from Drosophila and Dml1p from fungi are descendants of an ancestral tubulin-like protein, and exhibit regions with similarity to members of a GTPase family that includes eukaryotic tubulin and prokaryotic FtsZ. Dml1p and Misato have been co-opted into a role in mtDNA inheritance in yeast, and into a cell division-related mechanism in flies, respectively. Dml1p might additionally function in the partitioning of the mitochondrial organelle itself, or in the segregation of chromosomes, thereby explaining its essential requirement. This domain subject to extensive post-translational modifications.


Pssm-ID: 434281 [Multi-domain]  Cd Length: 180  Bit Score: 81.65  E-value: 3.19e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741  12 EAFGQGESVLKEPKYQEELEDR-LHFYVEECDYLQGFQILCDLHDGFSGVGAKAAELLQDEYSGRGII-TWGL-LPGPYH 88
Cdd:pfam14881  41 EDWSVGEELFRELDKEHDLLDRdLRPFAEECDQLQGLQVFTGSDDAWGGFAARYLERLRDEYGKKSIIwVWALqDPLKRI 120

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1184725741  89 RGEAQRNIYRLLNTAFGLVHLTAHSSLVCPLSLggslglrpePPvsfpylhyDATLPFHCSAILATALDTVTVPYRL 165
Cdd:pfam14881 121 RRTKRERRLRLANKARSLQSLSPQASLYVPIAT---------LS--------DGQSEWHTSALLSSAIESATLPSRL 180
PTZ00387 PTZ00387
epsilon tubulin; Provisional
 24-120 1.23e-05

epsilon tubulin; Provisional


Pssm-ID: 240395 [Multi-domain]  Cd Length: 465  Bit Score: 47.03  E-value: 1.23e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741  24 PKYQEELEDRLHFYVEECDYLQGFQILCDLHDGF-SGVGAKAAELLQDEYSGRGIITWGLLPG--------PYhrgeaqr 94
Cdd:PTZ00387  111 DKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTgSGLGTRILGMLEDEFPHVFRFCPVVFPSavddvitsPY------- 183

                          90       100
                  ....*....|....*....|....*.
gi 1184725741  95 niyrllNTAFGLVHLTAHSSLVCPLS 120
Cdd:PTZ00387  184 ------NSFFALRELIEHADCVLPLD 203
 
Name Accession Description Interval E-value
misato cd06060
Misato segment II tubulin-like domain; Human Misato shows similarity with Tubulin/FtsZ family ...
 7-382 8.08e-154

Misato segment II tubulin-like domain; Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.


Pssm-ID: 276964 [Multi-domain]  Cd Length: 539  Bit Score: 444.45  E-value: 8.08e-154
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741   7 EAGRLEAFGQGESVLKEPKYQEELEDRLHFYVEECDYLQGFQILCDLHDGFSGVGAKAAELLQDEYSGRGIITWGLLPGP 86
Cdd:cd06060   170 EFNPFDNFSQGEELFSDLEELEEFEDRLRFFVEECDSLQGFQILVDTDDGFGGVAAKLLENLRDEYGKKSILTPGLSPAS 249

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741  87 YHRGEAQRNIYRLLNTAFGLVHLTAHSSLVCPLSLGGSLGLRPEPPVSFPYLHYDatLPFHCSAILATALDTVTVPYRLC 166
Cdd:cd06060   250 PPDPDSQRRIKRLLNDALSLSSLSEHSSLFVPLSLPSLLWRKPGWPRTFPHLDYS--SPYHTSAVLAAALDTATLPYRLK 327

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741 167 SSPVSMVHLADMLSFCGKKVVTAGAIIPFPLAPGQSLPDSLMQFGGATPWTPlsacGEPSGTRCFAQSVVLRGIDRACHT 246
Cdd:cd06060   328 SSSVSMSDLCSSLTFSGRKVAALSLALPFPLLLGSSLLDSLQDLLGDLSLTP----SCQNETDVFAQSVVLRGIPESRLK 403

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741 247 SQltpgTPPPSALHACTTGEEILAQYLQQQQPGVMSSSHLLLTPCRVAPPYPHLFSSC-SPPGMVLDGSPKGA-AVESIP 324
Cdd:cd06060   404 SP----LQPRSPASRCSSVEEVLEGYLQCTFPGSSSAVTTLPQPLPVPTPFPSIFSPSlGRKGFLLDDSRPASlDVESVP 479

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1184725741 325 VFGALCSSSSLHQTLEALARDLTKLDLRRWASFMDAG-VEHDDVAELLQELQSLAQCYQ 382
Cdd:cd06060   480 VLASLQSSSALGPLLEELASEVEKLGLRKLHEFLGGGgLERDEFKESLEELLSLADCYG 538
Tubulin_FtsZ_Cetz-like cd00286
Tubulin protein family of FtsZ and CetZ-like; This family includes tubulin alpha-, beta-, ...
 3-332 6.58e-99

Tubulin protein family of FtsZ and CetZ-like; This family includes tubulin alpha-, beta-, gamma-, delta-, epsilon, and zeta-tubulins as well as FtsZ and CetZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts. A recent study found that CetZ proteins, formerly annotated FtsZ type 2, are not required for cell division, whereas FtsZ proteins play an important role. Instead, CetZ proteins are shown to be involved in controlling archaeal cell shape dynamics. The results from inactivation studies of CetZ proteins in Haloferax volcanii suggest that CetZ1 is essential for normal swimming motility and rod-cell development.


Pssm-ID: 276954 [Multi-domain]  Cd Length: 332  Bit Score: 297.40  E-value: 6.58e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741   3 TCGREAGRLEAFGQGESVLkEPKYQEELEDRLHFYVEECDYLQGFQILCDLHDG-FSGVGAKAAELLQDEYSGRGIITWG 81
Cdd:cd00286    51 LIQKYHGAGNNWAKGHSVA-GEEYQEEILDAIRKEVEECDELQGFFITHSLGGGtGSGLGPLLAERLKDEYPNRLVVTFS 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741  82 LLPGPYHrgeaqRNIYRLLNTAFGLVHLTAHSSLVCPLSLGGSLGLRPEPpvsfpyLHYDATLPFHCSAILATALDTVTV 161
Cdd:cd00286   130 ILPGPDE-----GVIVYPYNAALTLKTLTEHADCLLLVDNEALYDICPRP------LHIDAPAYDHINELVAQRLGSLTE 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741 162 PYRLCSSPVSMVHLadmlsfcgkkvvtaGAIIPFPLAPGQSLPDSLMQFGGATPWTPLSACGEPSGTRCFAQSVVLRGid 241
Cdd:cd00286   199 ALRFEGSLNVDLRE--------------LAENLVPLPRGHFLMLGYAPLDSATSATPRSLRVKELTRRAFLPANLLVG-- 262

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741 242 rachtsqltpgtpppsalHACTTGEEILAQYLQQQQPGvMSSSHLLLTPCRVAPPYPHLFsSCSPPGMVLDGSPKGAAvE 321
Cdd:cd00286   263 ------------------CDPDHGEAIAALLVIRGPPD-LSSKEVERAIARVKETLGHLF-SWSPAGVKTGISPKPPA-E 321

                         330
                  ....*....|.
gi 1184725741 322 SIPVFGALCSS 332
Cdd:cd00286   322 GEVSVLALLNS 332
Tubulin cd06059
The tubulin superfamily and related homologs; The tubulin superfamily includes five distinct ...
 9-383 3.57e-91

The tubulin superfamily and related homologs; The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Also included in this group is the mitochondrial Misato/DML1 protein family, involved in mitochondrial fusion and in mitochondrial distribution and morphology.


Pssm-ID: 276963 [Multi-domain]  Cd Length: 387  Bit Score: 279.47  E-value: 3.57e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741   9 GRLEAFGQGESVLKePKYQEELEDRLHFYVEECDYLQGFQILCDLHDG-FSGVGAKAAELLQDEYSGRGIITWGLLPGPY 87
Cdd:cd06059    57 GAGNNWAVGYYVYG-PKYIESILDRIRKQVEKCDSLQGFFILHSLGGGtGSGLGSYLLELLEDEYPKVYRFTFSVFPSPD 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741  88 HRGeaqrNIYRLLNTAFGLVHLTAHSSLVCPLSLGGSLGLRPEPPvsfPYLHYDATLPFHCSAILATALDTVTVPYRLCS 167
Cdd:cd06059   136 DDN----VITSPYNSVLALNHLTEHADCVLPIDNEALYDICNRQP---ATLDIDFPPFDDMNNLVAQLLSSLTSSLRFEG 208

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741 168 SpvSMVHLADMLSfcgkkvvtagAIIPFPLapGQSLPDSLMQFGGATPWTPLSACGEPSGTRCFAQSVVLRGIDrachts 247
Cdd:cd06059   209 S--LNVDLNEITT----------NLVPFPR--LHFLLPSLSPLTSANDVTLEPLTLDQLFSDLFSKDNQLVGCD------ 268

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741 248 qltpgtpppsalhaCTTGEEILAQYLQQQQpgVMSSSHLLLTPCRVAPPYPHLfsSCSPPGMVLDGSPKgAAVESIPVFG 327
Cdd:cd06059   269 --------------PRHGTYLACALLLRGK--VFSLSDVRRNIDRIKPKLKFI--SWNPDGFKVGLCSV-PPVGQKYSLL 329

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1184725741 328 ALCSSSSLHQTLEALARDLTKLDLRRWASFMDAGV--EHDDVAELLQELQSLAQCYQG 383
Cdd:cd06059   330 FLSNNTSIASTFERLIERFDKLYKRKAFLHHYTGEgmEEGDFSEARESLANLIQEYQE 387
Tubulin_3 pfam14881
Tubulin domain; This family includes the tubulin alpha, beta and gamma chains, as well as the ...
 12-165 3.19e-18

Tubulin domain; This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Misato from Drosophila and Dml1p from fungi are descendants of an ancestral tubulin-like protein, and exhibit regions with similarity to members of a GTPase family that includes eukaryotic tubulin and prokaryotic FtsZ. Dml1p and Misato have been co-opted into a role in mtDNA inheritance in yeast, and into a cell division-related mechanism in flies, respectively. Dml1p might additionally function in the partitioning of the mitochondrial organelle itself, or in the segregation of chromosomes, thereby explaining its essential requirement. This domain subject to extensive post-translational modifications.


Pssm-ID: 434281 [Multi-domain]  Cd Length: 180  Bit Score: 81.65  E-value: 3.19e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741  12 EAFGQGESVLKEPKYQEELEDR-LHFYVEECDYLQGFQILCDLHDGFSGVGAKAAELLQDEYSGRGII-TWGL-LPGPYH 88
Cdd:pfam14881  41 EDWSVGEELFRELDKEHDLLDRdLRPFAEECDQLQGLQVFTGSDDAWGGFAARYLERLRDEYGKKSIIwVWALqDPLKRI 120

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1184725741  89 RGEAQRNIYRLLNTAFGLVHLTAHSSLVCPLSLggslglrpePPvsfpylhyDATLPFHCSAILATALDTVTVPYRL 165
Cdd:pfam14881 121 RRTKRERRLRLANKARSLQSLSPQASLYVPIAT---------LS--------DGQSEWHTSALLSSAIESATLPSRL 180
epsilon_tubulin cd02190
The epsilon-tubulin family; The tubulin superfamily includes five distinct families, the ...
 24-120 9.64e-09

The epsilon-tubulin family; The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.


Pssm-ID: 276959 [Multi-domain]  Cd Length: 449  Bit Score: 56.86  E-value: 9.64e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741  24 PKYQEELEDRLHFYVEECDYLQGFQILCDLHDGF-SGVGAKAAELLQDEYSGRGIITWGLLP--------GPYhrgeaqr 94
Cdd:cd02190   116 PQYGESILEKLRRAAEKCDSLQSFFLLHSLGGGTgSGLGSYILELLEDEFPDVYRFVTSVFPsgdddvitSPY------- 188

                          90       100
                  ....*....|....*....|....*.
gi 1184725741  95 niyrllNTAFGLVHLTAHSSLVCPLS 120
Cdd:cd02190   189 ------NSVLALRELTEHADCVLPVE 208
Tubulin pfam00091
Tubulin/FtsZ family, GTPase domain; This family includes the tubulin alpha, beta and gamma ...
 24-116 5.12e-07

Tubulin/FtsZ family, GTPase domain; This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.


Pssm-ID: 459669 [Multi-domain]  Cd Length: 190  Bit Score: 49.52  E-value: 5.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741  24 PKYQEELEDRLHFYVEECDYLQGFQILCDLHDGF-SGVGAKAAELLQDEYSGR---GIITWgllpgPYHRGEAQRNIYrl 99
Cdd:pfam00091  89 REAAEESLEEIRKEVEGCDMLQGFFITASLGGGTgSGAAPVIAEILKELYPGAltvAVVTF-----PFGFSEGVVRPY-- 161

                          90
                  ....*....|....*..
gi 1184725741 100 lNTAFGLVHLTAHSSLV 116
Cdd:pfam00091 162 -NAILGLKELIEHSDSV 177
delta_zeta_tubulin-like cd02189
The delta- and zeta-tubulin families; The tubulin superfamily includes five distinct families, ...
 24-242 6.61e-06

The delta- and zeta-tubulin families; The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.


Pssm-ID: 276958 [Multi-domain]  Cd Length: 433  Bit Score: 48.03  E-value: 6.61e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741  24 PKYQEELEDRLHFYVEECDYLQGFQILCDLHDGF-SGVGAKAAELLQDEYSGRGIIT---WgllpgPYHRGEA--QRniy 97
Cdd:cd02189   104 PSLLEDILEALRREAERCDRLSGFLVLHSLAGGTgSGLGSRVTELLRDEYPKAYLLNtvvW-----PYSSGEVpvQN--- 175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741  98 rlLNTAFGLVHLTAHSSLVCPLS-------LGGSLGLRpePPVSFPYL-HYDATLpfhcsaiLATAL---DTVTVPYRLC 166
Cdd:cd02189   176 --YNTLLTLSHLQESSDGILLFEnddlhkiCSKLLGLK--NPVSFSDInRVIARQ-------LAGVLlpsSSPTSPSPLR 244

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741 167 SSPVSMV--HLADMLSFcgkKVVT-------AGAIIPFPLAPGQSLPDSLMQF-------GGATPWTPLSACGEPSGTRC 230
Cdd:cd02189   245 RCPLGDLleHLCPHPAY---KLLTlrslpqmPEPSRAFSTYTWPSLLKRLRQMlitgaklEEGIDWQLLDTSGSHNPNKS 321

                         250
                  ....*....|..
gi 1184725741 231 FAQSVVLRGIDR 242
Cdd:cd02189   322 LAALLVLRGKDA 333
PTZ00387 PTZ00387
epsilon tubulin; Provisional
 24-120 1.23e-05

epsilon tubulin; Provisional


Pssm-ID: 240395 [Multi-domain]  Cd Length: 465  Bit Score: 47.03  E-value: 1.23e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184725741  24 PKYQEELEDRLHFYVEECDYLQGFQILCDLHDGF-SGVGAKAAELLQDEYSGRGIITWGLLPG--------PYhrgeaqr 94
Cdd:PTZ00387  111 DKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTgSGLGTRILGMLEDEFPHVFRFCPVVFPSavddvitsPY------- 183

                          90       100
                  ....*....|....*....|....*.
gi 1184725741  95 niyrllNTAFGLVHLTAHSSLVCPLS 120
Cdd:PTZ00387  184 ------NSFFALRELIEHADCVLPLD 203
beta_tubulin cd02187
The beta-tubulin family; The tubulin superfamily includes five distinct families, the alpha-, ...
 24-86 8.03e-05

The beta-tubulin family; The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins.


Pssm-ID: 276956 [Multi-domain]  Cd Length: 425  Bit Score: 44.48  E-value: 8.03e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1184725741  24 PKYQEELEDRLHFYVEECDYLQGFQILCDLHDGF-SGVGAKAAELLQDEYSGRGIITWGLLPGP 86
Cdd:cd02187   109 AELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTgSGLGTLLLSKLREEYPDRIMSTFSVLPSP 172
alpha_tubulin cd02186
The alpha-tubulin family; The tubulin superfamily includes five distinct families, the alpha-, ...
 25-86 3.10e-04

The alpha-tubulin family; The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins.


Pssm-ID: 276955 [Multi-domain]  Cd Length: 434  Bit Score: 42.53  E-value: 3.10e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1184725741  25 KYQEELEDRLHFYVEECDYLQGFQILCDLHDGF-SGVGAKAAELLQDEYSGRGIITWGLLPGP 86
Cdd:cd02186   112 EIIDPVLDRIRKLAEQCDGLQGFLIFHSVGGGTgSGLTSLLLERLSVDYGKKSKLEFSIYPSP 174
PTZ00010 PTZ00010
tubulin beta chain; Provisional
 24-86 1.91e-03

tubulin beta chain; Provisional


Pssm-ID: 240228 [Multi-domain]  Cd Length: 445  Bit Score: 40.14  E-value: 1.91e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1184725741  24 PKYQEELEDRLHFYVEECDYLQGFQILCDLHDGF-SGVGAKAAELLQDEYSGRGIITWGLLPGP 86
Cdd:PTZ00010  110 AELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTgSGMGTLLISKLREEYPDRIMMTFSVFPSP 173
gamma_tubulin cd02188
The gamma-tubulin family; Gamma-tubulin is a ubiquitous phylogenetically conserved member of ...
 14-84 8.10e-03

The gamma-tubulin family; Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.


Pssm-ID: 276957 [Multi-domain]  Cd Length: 430  Bit Score: 38.29  E-value: 8.10e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1184725741  14 FGQGEsvlkepKYQEELEDRLHFYVEECDYLQGFQILcdlHD-----GfSGVGAKAAELLQDEYSGRGIITWGLLP 84
Cdd:cd02188   106 YSQGE------KVQEEILDIIDREAEGSDSLEGFVLC---HSiaggtG-SGMGSYLLERLSDRYPKKLIQTYSVFP 171
PLN00220 PLN00220
tubulin beta chain; Provisional
 39-86 9.27e-03

tubulin beta chain; Provisional


Pssm-ID: 215107 [Multi-domain]  Cd Length: 447  Bit Score: 37.88  E-value: 9.27e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1184725741  39 EECDYLQGFQILCDLHDGF-SGVGAKAAELLQDEYSGRGIITWGLLPGP 86
Cdd:PLN00220  125 ENCDCLQGFQVCHSLGGGTgSGMGTLLISKIREEYPDRMMLTFSVFPSP 173
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH