|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
124-399 |
6.36e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 6.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 124 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQEAISfQDRYKELQEKHKQELEDMRKAGHEALSI 203
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL-LAELARLEQDIARLEERRRELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 204 IVDEYKALLQ-SSVKQQVEAIEKQYISAIEKQAHKCEELLNAQHQRL-LEMLDTEKELLKEKIKEALIQQSQEQKEILEK 281
Cdd:COG1196 322 EEELAELEEElEELEEELEELEEELEEAEEELEEAEAELAEAEEALLeAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 282 CLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEERKNLEKAhAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETV 361
Cdd:COG1196 402 LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA-LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
250 260 270
....*....|....*....|....*....|....*...
gi 1200742238 362 KAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQ 399
Cdd:COG1196 481 ELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
123-379 |
7.18e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 7.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 123 IQLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGfLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALS 202
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE-LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 203 IIVDEYKALLQSSVKQQVEAIEKQYISAIEKQAhkceellnAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEkc 282
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAE--------EALLERLERLEEELEELEEALAELEEEEEEEEEALEE-- 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 283 LEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVK 362
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAV 526
|
250
....*....|....*..
gi 1200742238 363 AAIIEEQKRSEKAVEEA 379
Cdd:COG1196 527 AVLIGVEAAYEAALEAA 543
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
165-430 |
7.02e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 7.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 165 LKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQVEAIEKQYISAIEKQAHKCEELLNA 244
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 245 QHQRLLEMLDTEKELLKEkikealIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDavlkvvEEERKNLEKAH 324
Cdd:COG1196 314 LEERLEELEEELAELEEE------LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA------EAELAEAEEEL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 325 AEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQVIRQR 404
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260
....*....|....*....|....*.
gi 1200742238 405 SLSSLELFLSCAQKQLSALIATEPVD 430
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELA 487
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
135-404 |
7.33e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 7.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 135 KLKVSEEEKQRIKQDVESLMEKHNVLEKGfLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSIIVD-EYKALLQ 213
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAE-LAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDiARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 214 SSVKQQVEAIEKQYISAIEKQAHKCEELLNAQHQrlLEMLDTEKELLKEKIKEALIQQSQEQKEILEKclEEERQRNKEA 293
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEE--LEEAEEELEEAEAELAEAEEALLEAEAELAEA--EEELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 294 LVSAAKLEKEAVKDavlkvvEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSE 373
Cdd:COG1196 388 LLEALRAAAELAAQ------LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270
....*....|....*....|....*....|.
gi 1200742238 374 KAVEEAVKRTRDELIEYIKEQKRLDQVIRQR 404
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAAR 492
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
140-432 |
6.88e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 51.66 E-value: 6.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 140 EEEKQRIKQ-DVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGhealsiIVDEYKALLQSSVKQ 218
Cdd:pfam17380 347 ERELERIRQeERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVK------ILEEERQRKIQQQKV 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 219 QVEAIEKQYISAIEKQAHKCEEllnaQHQRLLEMLDTEkELLKEKIKEALIQQSQEQKeilEKCLEEERQRNKEALVSaa 298
Cdd:pfam17380 421 EMEQIRAEQEEARQREVRRLEE----ERAREMERVRLE-EQERQQQVERLRQQEEERK---RKKLELEKEKRDRKRAE-- 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 299 klekeavkdavlkvvEEERKNLEKAHAEERELWKTEHAKDQ--EKVSQEIQKAIQEQRkisqetvKAAIIEEQKRSEKAV 376
Cdd:pfam17380 491 ---------------EQRRKILEKELEERKQAMIEEERKRKllEKEMEERQKAIYEEE-------RRREAEEERRKQQEM 548
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1200742238 377 EEAvKRTRDELIEYIKEQKRLDQVIRQRSLSSLELFLSCAQKQLSAliATEPVDIE 432
Cdd:pfam17380 549 EER-RRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYEA--TTPITTIK 601
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
126-419 |
8.80e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 8.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 126 QQKISSLEIKLKVSEEEK-QRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQEKHKQELEDMRKAgHEALSII 204
Cdd:PTZ00121 1375 EAKKKADAAKKKAEEKKKaDEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKA-DEAKKKA 1453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 205 VDEYKAllQSSVKQQVEAIEKQYISAIEKQAHKCEELlNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLE 284
Cdd:PTZ00121 1454 EEAKKA--EEAKKKAEEAKKADEAKKKAEEAKKADEA-KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA 1530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 285 EERQRNKEALVSAAKLEKEAVKDAV-LKVVEEERKNLEKAHAEERELWKTEHA----KDQEKVSQEIQKAIQEQRKISQE 359
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKKADELKKAEeLKKAEEKKKAEEAKKAEEDKNMALRKAeeakKAEEARIEEVMKLYEEEKKMKAE 1610
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 360 TVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQVIRQRSLSSLELFLSCAQKQ 419
Cdd:PTZ00121 1611 EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
133-398 |
3.88e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 3.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 133 EIKLKVSEEEKQRIKQDVESLmEKHNVLEKGFLKEKEQEAISFQDRyKELQEKHKQELEDMRKAGHEALSIIVDEYKALL 212
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKKADEL-KKAEELKKAEEKKKAEEAKKAEED-KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK 1608
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 213 QSSVKQQVEA-IEKQYISAIEKQAHKCEELLNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQ--KEILEKCLEEERQR 289
Cdd:PTZ00121 1609 AEEAKKAEEAkIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEdkKKAEEAKKAEEDEK 1688
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 290 NKEALVSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQE----KVSQEIQKAIQEQRKISQETVKAAI 365
Cdd:PTZ00121 1689 KAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAeedkKKAEEAKKDEEEKKKIAHLKKEEEK 1768
|
250 260 270
....*....|....*....|....*....|....*
gi 1200742238 366 IEEQKRSEK--AVEEAVKRtRDELIEYIKEQKRLD 398
Cdd:PTZ00121 1769 KAEEIRKEKeaVIEEELDE-EDEKRRMEVDKKIKD 1802
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
137-382 |
4.30e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 4.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 137 KVSEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQEKHKQEL---EDMRKAgHEALSIIVDEYKALLQ 213
Cdd:PTZ00121 1504 KAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELkkaEEKKKA-EEAKKAEEDKNMALRK 1582
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 214 SSVKQQVEA--IEKQYISAIEKQAHKCEELLNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNK 291
Cdd:PTZ00121 1583 AEEAKKAEEarIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK 1662
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 292 EALVSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQE----KVSQEIQKAiQEQRKISQETVKAAIIE 367
Cdd:PTZ00121 1663 AAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEaeekKKAEELKKA-EEENKIKAEEAKKEAEE 1741
|
250
....*....|....*.
gi 1200742238 368 EQKRSEKA-VEEAVKR 382
Cdd:PTZ00121 1742 DKKKAEEAkKDEEEKK 1757
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
156-403 |
2.26e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 2.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 156 KHNVLEKGFLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEalsiivdeyKALLQSSVKQQVEAIEKQYISAIEKQA 235
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE---------LSRQISALRKDLARLEAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 236 HKCEELLNAQHQRllEMLDTEKELLKEKIKEALIQQSQEQKEILEkcLEEERQRNKEALvSAAKLEKEAVKDAVLKVVEE 315
Cdd:TIGR02168 751 QLSKELTELEAEI--EELEERLEEAEEELAEAEAEIEELEAQIEQ--LKEELKALREAL-DELRAELTLLNEEAANLRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 316 ERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKaVEEAVKRTRDELIEYIKEQK 395
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS-LEEALALLRSELEELSEELR 904
|
....*...
gi 1200742238 396 RLDQVIRQ 403
Cdd:TIGR02168 905 ELESKRSE 912
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
181-403 |
2.27e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 2.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 181 ELQEKHKQELEDMRKAGHEALSIIVDEYKAllQSSVKQQVEAIEKQyISAIEKQAHKCEELLNAQHQRLlemldTEKELL 260
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKE--EKALLKQLAALERR-IAALARRIRALEQELAALEAEL-----AELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 261 KEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEER-ELWKTEHAKDQ 339
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLaELAALRAELEA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1200742238 340 EKVSQEIQKAIQEQRKISQETVKAaiieEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQVIRQ 403
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKA----ERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
124-398 |
7.63e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 7.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 124 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGF------LKEKEQEAISFQDRYkELQEKHKQELEDMRKAG 197
Cdd:TIGR02168 688 ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIsalrkdLARLEAEVEQLEERI-AQLSKELTELEAEIEEL 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 198 HEALSIIVDEYKALLQ--SSVKQQVEAIEKQyISAIEKQAHKCEELLNAQHQRLLEMLDTEKELLKEKI-KEALIQQSQE 274
Cdd:TIGR02168 767 EERLEEAEEELAEAEAeiEELEAQIEQLKEE-LKALREALDELRAELTLLNEEAANLRERLESLERRIAaTERRLEDLEE 845
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 275 QKEILEKCLEEERQRNKEALVSAAKLEKEavkdavLKVVEEERKNLEKAHAEERElwktehakDQEKVSQEIQKAIQEQR 354
Cdd:TIGR02168 846 QIEELSEDIESLAAEIEELEELIEELESE------LEALLNERASLEEALALLRS--------ELEELSEELRELESKRS 911
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1200742238 355 KISQETVKAaiiEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLD 398
Cdd:TIGR02168 912 ELRRELEEL---REKLAQLELRLEGLEVRIDNLQERLSEEYSLT 952
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
140-404 |
9.88e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 9.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 140 EEEKQRIKQDVESLMEKHNVLEKgfLKEKEQEAIsfqdRYKELQEKhKQELEdmrkagheaLSIIVDEYKALLQssvkqQ 219
Cdd:TIGR02169 180 EEVEENIERLDLIIDEKRQQLER--LRREREKAE----RYQALLKE-KREYE---------GYELLKEKEALER-----Q 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 220 VEAIEKQyISAIEKQAHKCEELLNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEAlvsAAK 299
Cdd:TIGR02169 239 KEAIERQ-LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIA---EKE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 300 LEKEAVKDAVLKVVEEERKNLEKAHAEERELwkTEHAKDQEKVSQEIQKAIQEQRKISQEtvkaaiIEEqkrsekaVEEA 379
Cdd:TIGR02169 315 RELEDAEERLAKLEAEIDKLLAEIEELEREI--EEERKRRDKLTEEYAELKEELEDLRAE------LEE-------VDKE 379
|
250 260
....*....|....*....|....*
gi 1200742238 380 VKRTRDELIEYikeQKRLDQVIRQR 404
Cdd:TIGR02169 380 FAETRDELKDY---REKLEKLKREI 401
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
135-396 |
1.17e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 135 KLKVSEEEKQRIKQDVESLMEKHNVLEKgflkekEQEAISFQDRYKELQEKHKQELEDMRKAghEALSIIVDEYKALLQS 214
Cdd:PTZ00121 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKK------KAEEKKKADEAKKKAEEDKKKADELKKA--AAAKKKADEAKKKAEE 1429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 215 SVKQQVEAIEKQYISAIEKQAHKCEELLNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEAL 294
Cdd:PTZ00121 1430 KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK 1509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 295 VSAAKLEK--EAVKDAVLKVVEEERKNLEKAHAEERElwKTEHAKDQEKV--SQEIQKAIQEQRKISQETVKAAIIEEQK 370
Cdd:PTZ00121 1510 KKADEAKKaeEAKKADEAKKAEEAKKADEAKKAEEKK--KADELKKAEELkkAEEKKKAEEAKKAEEDKNMALRKAEEAK 1587
|
250 260
....*....|....*....|....*.
gi 1200742238 371 RSEKAVEEAVKRTRDELIEYIKEQKR 396
Cdd:PTZ00121 1588 KAEEARIEEVMKLYEEEKKMKAEEAK 1613
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
124-395 |
1.46e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.28 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 124 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGF-------------LKEKEQEAISFQDRYKELQEKHKQEL 190
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIeelqkelyalaneISRLEQQKQILRERLANLERQLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 191 EDMRKAGHEAlsiivDEYKALLQsSVKQQVEAIEKQYISAIEKQAHKCEELLNAqhQRLLEMLDTEKELLKEKIKEALIQ 270
Cdd:TIGR02168 323 AQLEELESKL-----DELAEELA-ELEEKLEELKEELESLEAELEELEAELEEL--ESRLEELEEQLETLRSKVAQLELQ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 271 QSQEQKEILE-----KCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEERELWKTEhakdqEKVSQE 345
Cdd:TIGR02168 395 IASLNNEIERlearlERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEAL-----EELREE 469
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1200742238 346 IQKAIQEQRKISQEtvkaaiiEEQKRSEKAVEEAVKRTRDELIEYIKEQK 395
Cdd:TIGR02168 470 LEEAEQALDAAERE-------LAQLQARLDSLERLQENLEGFSEGVKALL 512
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
156-400 |
2.99e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 2.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 156 KHNVLEKGFLKEKEQEAISFQDRYKelQEKHKQELEDMRKAghEALSIIVDEYKALLQSSVKQQVEAIEKQYISAIEKQA 235
Cdd:PTZ00121 1279 KADELKKAEEKKKADEAKKAEEKKK--ADEAKKKAEEAKKA--DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEA 1354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 236 HKcEELLNAQHQRLLEMLDTEKEllkEKIKEALIQQSQEQK--EILEKCLEEERQRNKEalvsAAKLEKEAVKDAVLKVV 313
Cdd:PTZ00121 1355 AA-DEAEAAEEKAEAAEKKKEEA---KKKADAAKKKAEEKKkaDEAKKKAEEDKKKADE----LKKAAAAKKKADEAKKK 1426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 314 EEERKNLEKAHAEERELWKTEHAK---DQEKVSQEIQKAIQEQRKISQETVKAaiiEEQKRSEKAVEEA--VKRTRDELI 388
Cdd:PTZ00121 1427 AEEKKKADEAKKKAEEAKKADEAKkkaEEAKKAEEAKKKAEEAKKADEAKKKA---EEAKKADEAKKKAeeAKKKADEAK 1503
|
250
....*....|..
gi 1200742238 389 EYIKEQKRLDQV 400
Cdd:PTZ00121 1504 KAAEAKKKADEA 1515
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
180-403 |
3.84e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 3.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 180 KELQEKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQVEAIEKQYISAIEKQAHKCEELLNAQHQRLLEMLDTEKEL 259
Cdd:PTZ00121 1240 EEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADE 1319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 260 LKEKIKEALiQQSQEQKEILEKCLEEERQRNKEALVSAAKLEK-EAVKDAVLKVVEEERKNLEKAHAEERELWKTEHAK- 337
Cdd:PTZ00121 1320 AKKKAEEAK-KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAaEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKk 1398
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 338 ---DQEKVSQEIQKAIQEQRKISQETVKAaiiEEQKRSEKAVEEAV-KRTRDELIEYIKEQKRLDQVIRQ 403
Cdd:PTZ00121 1399 kaeEDKKKADELKKAAAAKKKADEAKKKA---EEKKKADEAKKKAEeAKKADEAKKKAEEAKKAEEAKKK 1465
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
124-388 |
3.90e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 3.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 124 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKgFLKEKEQEAISFQDRYKELQEKHKQeledmrkaghealsi 203
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALAR-RIRALEQELAALEAELAELEKEIAE--------------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 204 ivdeykalLQSSVKQQVEAIEKQyISAIEK--QAHKCEELLNA----QHQRLLEMLDTEKELLKEKIKEalIQQSQEQKE 277
Cdd:COG4942 95 --------LRAELEAQKEELAEL-LRALYRlgRQPPLALLLSPedflDAVRRLQYLKYLAPARREQAEE--LRADLAELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 278 ILEKCLEEERQRnkealvsaaklekeavKDAVLKVVEEERKNLEKAHAEERELwKTEHAKDQEKVSQEIQKAIQEQRKIs 357
Cdd:COG4942 164 ALRAELEAERAE----------------LEALLAELEEERAALEALKAERQKL-LARLEKELAELAAELAELQQEAEEL- 225
|
250 260 270
....*....|....*....|....*....|.
gi 1200742238 358 QETVKAAIIEEQKRSEKAVEEAVKRTRDELI 388
Cdd:COG4942 226 EALIARLEAEAAAAAERTPAAGFAALKGKLP 256
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
136-322 |
4.91e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 4.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 136 LKVSEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQEKHKQELEDMR--KAGHEALSIIVDEYKALLQ 213
Cdd:COG4913 254 LEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELErlEARLDALREELDELEAQIR 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 214 SSVKQQVEAIEKQyISAIEKQAHKCEELLNAQHQRL----LEMLDTEKELlkekikEALIQQSQEQKEILEKCLEEERQR 289
Cdd:COG4913 334 GNGGDRLEQLERE-IERLERELEERERRRARLEALLaalgLPLPASAEEF------AALRAEAAALLEALEEELEALEEA 406
|
170 180 190
....*....|....*....|....*....|...
gi 1200742238 290 NKEALVSAAKLEKEavkdavLKVVEEERKNLEK 322
Cdd:COG4913 407 LAEAEAALRDLRRE------LRELEAEIASLER 433
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
124-332 |
6.94e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.97 E-value: 6.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 124 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKhnvlekgfLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSI 203
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKLEELKEELESLEAE--------LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 204 ivdeykALLQSSVKQQVEAIEKQYISAIEKQAHKCEELLNAQHQRLLEMLDTEKELLKEKIKEaliqqsQEQKEILEKCL 283
Cdd:TIGR02168 399 ------NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEE------LERLEEALEEL 466
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1200742238 284 EEERQRNKEALVSAAklEKEAVKDAVLKVVEEERKNLEKAHAEERELWK 332
Cdd:TIGR02168 467 REELEEAEQALDAAE--RELAQLQARLDSLERLQENLEGFSEGVKALLK 513
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
135-351 |
1.51e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.88 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 135 KLKVSEEEKQRIKQDVESLMEKhnvlekgfLKEKEQEAisFQDRYKELQEKHKQELEDMRKaghealsiivDEYKALLQS 214
Cdd:pfam17380 403 KVKILEEERQRKIQQQKVEMEQ--------IRAEQEEA--RQREVRRLEEERAREMERVRL----------EEQERQQQV 462
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 215 SVKQQVEAIEKQYISAIEKQAHKcEELLNAQHQRLLE--MLDTEKELLKEKIKEALIQQSQE--QKEILEkclEEERQRN 290
Cdd:pfam17380 463 ERLRQQEEERKRKKLELEKEKRD-RKRAEEQRRKILEkeLEERKQAMIEEERKRKLLEKEMEerQKAIYE---EERRREA 538
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1200742238 291 KEALVSAAKLEKEAVKDAVLKVVEEERKNLEkahAEERELWKTEHAKDQEKVSQEIQKAIQ 351
Cdd:pfam17380 539 EEERRKQQEMEERRRIQEQMRKATEERSRLE---AMEREREMMRQIVESEKARAEYEATTP 596
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
191-399 |
1.67e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.89 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 191 EDMRKAGHEALSIIVDEYKALLQSSVKQQVEAIEKQyisaieKQAHKCEELLNAQHQRLLEMLDTEKELLKekiKEALIQ 270
Cdd:PTZ00121 1173 EDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKA------EEERKAEEARKAEDAKKAEAVKKAEEAKK---DAEEAK 1243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 271 QSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEERElwKTEHAK---DQEKVSQEIQ 347
Cdd:PTZ00121 1244 KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKK--KADEAKkkaEEAKKADEAK 1321
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1200742238 348 KAIQEQRKISQETVKAAiiEEQKRSEKAVEEAVKRTRDELiEYIKEQKRLDQ 399
Cdd:PTZ00121 1322 KKAEEAKKKADAAKKKA--EEAKKAAEAAKAEAEAAADEA-EAAEEKAEAAE 1370
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
187-309 |
3.19e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 39.81 E-value: 3.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 187 KQELEDMrKAGHEALSIIVDEYKALLQSsVKQQVEAIEKQYISAIEKQAHKCEELLNAQHQRLLEMLDTEKELLKEKIKE 266
Cdd:PRK00409 515 KEKLNEL-IASLEELERELEQKAEEAEA-LLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKE 592
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1200742238 267 ALIQQSQEQKEILEKCLEEERQRNKEAL--VSAAKLEKEAVKDAV 309
Cdd:PRK00409 593 LRQLQKGGYASVKAHELIEARKRLNKANekKEKKKKKQKEKQEEL 637
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
124-392 |
3.28e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.00 E-value: 3.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 124 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGflkekeqeaisfQDRYKELQEKHKQELEDMRKAGHeALSI 203
Cdd:TIGR04523 388 NLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE------------IERLKETIIKNNSEIKDLTNQDS-VKEL 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 204 IVDEYKAlLQSSVKQQVEAIEKQYISAIEKQAHKCEELLNAQHQrlLEMLDTEKELLKEKIKEaLIQQSQEQKEILEKCL 283
Cdd:TIGR04523 455 IIKNLDN-TRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKE--LKKLNEEKKELEEKVKD-LTKKISSLKEKIEKLE 530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 284 EEERQRNKEALVSAAKLEK---EAVKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQE--KVSQEIQKAIQEQ----R 354
Cdd:TIGR04523 531 SEKKEKESKISDLEDELNKddfELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELidQKEKEKKDLIKEIeekeK 610
|
250 260 270
....*....|....*....|....*....|....*...
gi 1200742238 355 KISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIK 392
Cdd:TIGR04523 611 KISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVK 648
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
130-316 |
3.61e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.38 E-value: 3.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 130 SSLEIKLKVSEEEKQRIKQDVESLMEKHNvlekgflKEKEQEAisfQDRYKELQEKHKQELEDMRKaghealsiivdEYK 209
Cdd:PRK12704 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIK-------KEALLEA---KEEIHKLRNEFEKELRERRN-----------ELQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 210 ALlQSSVKQQVEAIEKQyisaiekqahkcEELLNAQHQRLLEmldtekellKEKIKEALIQQSQEQKEILEKCLEEERQR 289
Cdd:PRK12704 86 KL-EKRLLQKEENLDRK------------LELLEKREEELEK---------KEKELEQKQQELEKKEEELEELIEEQLQE 143
|
170 180
....*....|....*....|....*..
gi 1200742238 290 nkeaLVSAAKLEKEAVKDAVLKVVEEE 316
Cdd:PRK12704 144 ----LERISGLTAEEAKEILLEKVEEE 166
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
113-325 |
3.89e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 39.35 E-value: 3.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 113 SEDPGANVSNIQLQQKISSLEIKLKV-SEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQEKHKQELE 191
Cdd:pfam09731 225 PEHLDNVEEKVEKAQSLAKLVDQYKElVASERIVFQQELVSIFPDIIPVLKEDNLLSNDDLNSLIAHAHREIDQLSKKLA 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 192 DMRKAGHEALSIIVDEYKALLQSSVKQQVEAIEKQYISAIEK----QAHKCEELLNAQHQRLLEMLDTEKELLKEKIKEA 267
Cdd:pfam09731 305 ELKKREEKHIERALEKQKEELDKLAEELSARLEEVRAADEAQlrleFEREREEIRESYEEKLRTELERQAEAHEEHLKDV 384
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1200742238 268 LIQQSQE----QKEILEKCLEEERQRNKEALvSAAKLEKEAVKDAVLKVVEEERKNLeKAHA 325
Cdd:pfam09731 385 LVEQEIElqreFLQDIKEKVEEERAGRLLKL-NELLANLKGLEKATSSHSEVEDENR-KAQQ 444
|
|
| Nup88 |
pfam10168 |
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal ... |
159-322 |
7.38e-03 |
|
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells.
Pssm-ID: 462975 [Multi-domain] Cd Length: 713 Bit Score: 38.87 E-value: 7.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 159 VLEKGFLKEKEQEAISFQDRYKELQEKHKQELEDM------RKAGHEALSIIVDEYKallqssvkqqvEAIEKQyisaiE 232
Cdd:pfam10168 543 VFREEYLKKHDLAREEIQKRVKLLKLQKEQQLQELqsleeeRKSLSERAEKLAEKYE-----------EIKDKQ-----E 606
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742238 233 KQAHKCEELLNAQHQRLLEMLDTEKELLKE--KIKEAL------IQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEA 304
Cdd:pfam10168 607 KLMRRCKKVLQRLNSQLPVLSDAEREMKKEleTINEQLkhlanaIKQAKKKMNYQRYQIAKSQSIRKKSSLSLSEKQRKT 686
|
170
....*....|....*...
gi 1200742238 305 VKDaVLKVVEEERKNLEK 322
Cdd:pfam10168 687 IKE-ILKQLGSEIDELIK 703
|
|
| |
