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Conserved domains on  [gi|1200742280|ref|NP_001339013|]
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coiled-coil domain-containing protein 91 isoform 4 [Homo sapiens]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 1000037)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 137-413 6.52e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 61.11  E-value: 6.52e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 137 KISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGfLKEKEQEAISFQDRYKELQALLQSSVKQqveaiekqyISAIEK 216
Cdd:COG1196   233 KLRELEAELEELEAELEELEAELEELEAELAELEAE-LEELRLELEELELELEEAQAEEYELLAE---------LARLEQ 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 217 QAHKCEELLNAQHQRLLEmLDTEKELLKEKIKEALIQQSQEQKEILEkcLEEERQRNKEALVSAAKLEKEAVKDAVLKVV 296
Cdd:COG1196   303 DIARLEERRRELEERLEE-LEEELAELEEELEELEEELEELEEELEE--AEEELEEAEAELAEAEEALLEAEAELAEAEE 379

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 297 EEERKNLEKAHAEERELwktEHAKDQEKVSQEIQKAIQEQRKISQEtvkaaiIEEQKRSEKAVEEAVKRTRDELIEYIKE 376
Cdd:COG1196   380 ELEELAEELLEALRAAA---ELAAQLEELEEAEEALLERLERLEEE------LEELEEALAELEEEEEEEEEALEEAAEE 450

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1200742280 377 QKRLDQVIRQRSLSSLELFLSCAQKQLSALIATEPVD 413
Cdd:COG1196   451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 137-413 6.52e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 61.11  E-value: 6.52e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 137 KISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGfLKEKEQEAISFQDRYKELQALLQSSVKQqveaiekqyISAIEK 216
Cdd:COG1196   233 KLRELEAELEELEAELEELEAELEELEAELAELEAE-LEELRLELEELELELEEAQAEEYELLAE---------LARLEQ 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 217 QAHKCEELLNAQHQRLLEmLDTEKELLKEKIKEALIQQSQEQKEILEkcLEEERQRNKEALVSAAKLEKEAVKDAVLKVV 296
Cdd:COG1196   303 DIARLEERRRELEERLEE-LEEELAELEEELEELEEELEELEEELEE--AEEELEEAEAELAEAEEALLEAEAELAEAEE 379

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 297 EEERKNLEKAHAEERELwktEHAKDQEKVSQEIQKAIQEQRKISQEtvkaaiIEEQKRSEKAVEEAVKRTRDELIEYIKE 376
Cdd:COG1196   380 ELEELAEELLEALRAAA---ELAAQLEELEEAEEALLERLERLEEE------LEELEEALAELEEEEEEEEEALEEAAEE 450

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1200742280 377 QKRLDQVIRQRSLSSLELFLSCAQKQLSALIATEPVD 413
Cdd:COG1196   451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
PTZ00121 PTZ00121
MAEBL; Provisional
 135-369 1.49e-08

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 57.07  E-value: 1.49e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  135 QQKISSLEIKLKVSEEEK-QRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQALLQSSVKQQVEAIEKQYISA 213
Cdd:PTZ00121  1467 EEAKKADEAKKKAEEAKKaDEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK 1546

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  214 IEKQAHKCEELLNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEAlVSAAKLEKEAVKDAVL 293
Cdd:PTZ00121  1547 KADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA-EEAKKAEEAKIKAEEL 1625

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1200742280  294 KVVEEERKNLEK-AHAEERELWKTEHAKDQEKVSQeiQKAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDE 369
Cdd:PTZ00121  1626 KKAEEEKKKVEQlKKKEAEEKKKAEELKKAEEENK--IKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE 1700
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 146-415 8.25e-06

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 48.20  E-value: 8.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 146 KVSEEEKQRikqDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQALLQSSVKQQVEAIEKQyiSAIEKQAHKCEELL 225
Cdd:pfam17380 352 RIRQEERKR---ELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQ--RKIQQQKVEMEQIR 426

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 226 NAQH---QRLLEMLDTEKELLKEKIK----------EALIQQSQEQKeilEKCLEEERQRNKEALVSaaklekeavkdav 292
Cdd:pfam17380 427 AEQEearQREVRRLEEERAREMERVRleeqerqqqvERLRQQEEERK---RKKLELEKEKRDRKRAE------------- 490

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 293 lkvvEEERKNLEKAHAEERELWKTEHAKDQ--EKVSQEIQKAIQEQRkisqetvKAAIIEEQKRSEKAVEEAvKRTRDEL 370
Cdd:pfam17380 491 ----EQRRKILEKELEERKQAMIEEERKRKllEKEMEERQKAIYEEE-------RRREAEEERRKQQEMEER-RRIQEQM 558

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1200742280 371 IEYIKEQKRLDQVIRQRSLSSLELFLSCAQKQLSAliATEPVDIE 415
Cdd:pfam17380 559 RKATEERSRLEAMEREREMMRQIVESEKARAEYEA--TTPITTIK 601
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 133-387 1.73e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 47.36  E-value: 1.73e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  133 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEkgflkEKEQEAisfQDRYKELQAlLQSSVKQQVEAIEKQyis 212
Cdd:TIGR02168  243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELE-----EEIEEL---QKELYALAN-EISRLEQQKQILRER--- 310

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  213 aiEKQAHKCEELLNAQHQRLLEMLDTEKELLKEkiKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAvkDAV 292
Cdd:TIGR02168  311 --LANLERQLEELEAQLEELESKLDELAEELAE--LEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL--ETL 384

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  293 LKVVEEERKNLEKAHAEERELwkTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIE 372
Cdd:TIGR02168  385 RSKVAQLELQIASLNNEIERL--EARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEA 462

                          250
                   ....*....|....*
gi 1200742280  373 YIKEQKRLDQVIRQR 387
Cdd:TIGR02168  463 LEELREELEEAEQAL 477
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 137-413 6.52e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 61.11  E-value: 6.52e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 137 KISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGfLKEKEQEAISFQDRYKELQALLQSSVKQqveaiekqyISAIEK 216
Cdd:COG1196   233 KLRELEAELEELEAELEELEAELEELEAELAELEAE-LEELRLELEELELELEEAQAEEYELLAE---------LARLEQ 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 217 QAHKCEELLNAQHQRLLEmLDTEKELLKEKIKEALIQQSQEQKEILEkcLEEERQRNKEALVSAAKLEKEAVKDAVLKVV 296
Cdd:COG1196   303 DIARLEERRRELEERLEE-LEEELAELEEELEELEEELEELEEELEE--AEEELEEAEAELAEAEEALLEAEAELAEAEE 379

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 297 EEERKNLEKAHAEERELwktEHAKDQEKVSQEIQKAIQEQRKISQEtvkaaiIEEQKRSEKAVEEAVKRTRDELIEYIKE 376
Cdd:COG1196   380 ELEELAEELLEALRAAA---ELAAQLEELEEAEEALLERLERLEEE------LEELEEALAELEEEEEEEEEALEEAAEE 450

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1200742280 377 QKRLDQVIRQRSLSSLELFLSCAQKQLSALIATEPVD 413
Cdd:COG1196   451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 133-382 9.81e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 57.64  E-value: 9.81e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 133 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGfLKEKEQEAISFQDRYKELQALLQSsVKQQVEAIEKQYIS 212
Cdd:COG1196   271 ELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER-RRELEERLEELEEELAELEEELEE-LEEELEELEEELEE 348

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 213 AIEKQAHKCEELLNAQHQRL-LEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDA 291
Cdd:COG1196   349 AEEELEEAEAELAEAEEALLeAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 292 VLKVVEEERKNLEKAhAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELI 371
Cdd:COG1196   429 ALAELEEEEEEEEEA-LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFL 507

                         250
                  ....*....|.
gi 1200742280 372 EYIKEQKRLDQ 382
Cdd:COG1196   508 EGVKAALLLAG 518
PTZ00121 PTZ00121
MAEBL; Provisional
 135-369 1.49e-08

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 57.07  E-value: 1.49e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  135 QQKISSLEIKLKVSEEEK-QRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQALLQSSVKQQVEAIEKQYISA 213
Cdd:PTZ00121  1467 EEAKKADEAKKKAEEAKKaDEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK 1546

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  214 IEKQAHKCEELLNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEAlVSAAKLEKEAVKDAVL 293
Cdd:PTZ00121  1547 KADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA-EEAKKAEEAKIKAEEL 1625

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1200742280  294 KVVEEERKNLEK-AHAEERELWKTEHAKDQEKVSQeiQKAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDE 369
Cdd:PTZ00121  1626 KKAEEEKKKVEQlKKKEAEEKKKAEELKKAEEENK--IKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE 1700
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 132-369 2.04e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 56.48  E-value: 2.04e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 132 IQLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGfLKEKEQEAISFQDRYKELQALLQSSVKQQVEAIEKQyi 211
Cdd:COG1196   298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE-LEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL-- 374

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 212 saiekqahkcEELLNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAvkda 291
Cdd:COG1196   375 ----------AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE---- 440

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1200742280 292 vLKVVEEERKNLEKAHAEERELwKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDE 369
Cdd:COG1196   441 -EEALEEAAEEEAELEEEEEAL-LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLL 516
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 176-413 2.32e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 53.02  E-value: 2.32e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 176 EKEQEAISFQDRYKELQALLQSSVKQQVEAIEKQYISAIEKQAHKCEELlnaqhQRLLEMLDTEKELLKEKIKEA--LIQ 253
Cdd:COG1196   210 EKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEEL-----EAELAELEAELEELRLELEELelELE 284

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 254 QSQEQKEILEKCLEE-------ERQRNKEALVSAAKLEKEAVK---------------DAVLKVVEEERKNLEKAHAEER 311
Cdd:COG1196   285 EAQAEEYELLAELARleqdiarLEERRRELEERLEELEEELAEleeeleeleeeleelEEELEEAEEELEEAEAELAEAE 364

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 312 ELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQVIRQRSLSS 391
Cdd:COG1196   365 EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL 444

                         250       260
                  ....*....|....*....|..
gi 1200742280 392 LELFLSCAQKQLSALIATEPVD 413
Cdd:COG1196   445 EEAAEEEAELEEEEEALLELLA 466
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 132-362 3.62e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 52.63  E-value: 3.62e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 132 IQLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGfLKEKEQEAISFQDRYKELQALLQSSVKQQVEAIEKQYI 211
Cdd:COG1196   319 EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE-LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 212 SAIEKQAhkcEELLNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEkcLEEERQRNKEALVSAAKLEKEAVKDA 291
Cdd:COG1196   398 LAAQLEE---LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE--AAEEEAELEEEEEALLELLAELLEEA 472

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1200742280 292 VLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKAVEEA 362
Cdd:COG1196   473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAA 543
PTZ00121 PTZ00121
MAEBL; Provisional
 142-365 5.94e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 48.60  E-value: 5.94e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  142 EIKLKVSEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQ--ALLQSSVKQQVEAIEKQYIsaiEKQAH 219
Cdd:PTZ00121  1531 EEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRkaEEAKKAEEARIEEVMKLYE---EEKKM 1607

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  220 KCEELLNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEE 299
Cdd:PTZ00121  1608 KAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE 1687

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1200742280  300 RKNLEKAHAEERELWKTEHAKDQE----KVSQEIQKAiQEQRKISQETVKAAIIEEQKRSEKA-VEEAVKR 365
Cdd:PTZ00121  1688 KKAAEALKKEAEEAKKAEELKKKEaeekKKAEELKKA-EEENKIKAEEAKKEAEEDKKKAEEAkKDEEEKK 1757
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 133-371 7.98e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 47.45  E-value: 7.98e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 133 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKgFLKEKEQEAISFQDRYKELQ---ALLQSSVKQQVEAIEKQ 209
Cdd:COG4942    31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALAR-RIRALEQELAALEAELAELEkeiAELRAELEAQKEELAEL 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 210 yISAIEK--QAHKCEELLNA----QHQRLLEMLDTEKELLKEKIKEalIQQSQEQKEILEKCLEEERQRnkealvsaakl 283
Cdd:COG4942   110 -LRALYRlgRQPPLALLLSPedflDAVRRLQYLKYLAPARREQAEE--LRADLAELAALRAELEAERAE----------- 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 284 ekeavKDAVLKVVEEERKNLEKAHAEERELwKTEHAKDQEKVSQEIQKAIQEQRKIsQETVKAAIIEEQKRSEKAVEEAV 363
Cdd:COG4942   176 -----LEALLAELEEERAALEALKAERQKL-LARLEKELAELAAELAELQQEAEEL-EALIARLEAEAAAAAERTPAAGF 248


                  ....*...
gi 1200742280 364 KRTRDELI 371
Cdd:COG4942   249 AALKGKLP 256
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 146-415 8.25e-06

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 48.20  E-value: 8.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 146 KVSEEEKQRikqDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQALLQSSVKQQVEAIEKQyiSAIEKQAHKCEELL 225
Cdd:pfam17380 352 RIRQEERKR---ELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQ--RKIQQQKVEMEQIR 426

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 226 NAQH---QRLLEMLDTEKELLKEKIK----------EALIQQSQEQKeilEKCLEEERQRNKEALVSaaklekeavkdav 292
Cdd:pfam17380 427 AEQEearQREVRRLEEERAREMERVRleeqerqqqvERLRQQEEERK---RKKLELEKEKRDRKRAE------------- 490

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 293 lkvvEEERKNLEKAHAEERELWKTEHAKDQ--EKVSQEIQKAIQEQRkisqetvKAAIIEEQKRSEKAVEEAvKRTRDEL 370
Cdd:pfam17380 491 ----EQRRKILEKELEERKQAMIEEERKRKllEKEMEERQKAIYEEE-------RRREAEEERRKQQEMEER-RRIQEQM 558

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1200742280 371 IEYIKEQKRLDQVIRQRSLSSLELFLSCAQKQLSAliATEPVDIE 415
Cdd:pfam17380 559 RKATEERSRLEAMEREREMMRQIVESEKARAEYEA--TTPITTIK 601
PTZ00121 PTZ00121
MAEBL; Provisional
 150-381 8.62e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 48.21  E-value: 8.62e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  150 EEKQRIKQDVESLMEKHNVLEKgFLKEKEQEAISFQDRYKELQAllQSSVKQQVEAIEKQYISAIEKQAHKCEELLNAQH 229
Cdd:PTZ00121  1567 EEAKKAEEDKNMALRKAEEAKK-AEEARIEEVMKLYEEEKKMKA--EEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA 1643

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  230 QRLLEMLDTEKELLKEKIKEALIQQSQEQ--KEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEERKNLEKAH 307
Cdd:PTZ00121  1644 EEKKKAEELKKAEEENKIKAAEEAKKAEEdkKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  308 AEERELWKTEHAKDQE----KVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEK--AVEEAVKRtRDELIEYIKEQKRLD 381
Cdd:PTZ00121  1724 AEEENKIKAEEAKKEAeedkKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKeaVIEEELDE-EDEKRRMEVDKKIKD 1802
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 174-386 1.48e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 46.68  E-value: 1.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 174 LKEKEQEAISFQDRYKELQALLQS------SVKQQVEAIEKQyISAIEKQAHKCEELLNAQHQRLlemldTEKELLKEKI 247
Cdd:COG4942    22 AAEAEAELEQLQQEIAELEKELAAlkkeekALLKQLAALERR-IAALARRIRALEQELAALEAEL-----AELEKEIAEL 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 248 KEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEER-ELWKTEHAKDQEKVS 326
Cdd:COG4942    96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLaELAALRAELEAERAE 175

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 327 QEIQKAIQEQRKISQETVKAaiieEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQVIRQ 386
Cdd:COG4942   176 LEALLAELEEERAALEALKA----ERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 133-387 1.73e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 47.36  E-value: 1.73e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  133 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEkgflkEKEQEAisfQDRYKELQAlLQSSVKQQVEAIEKQyis 212
Cdd:TIGR02168  243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELE-----EEIEEL---QKELYALAN-EISRLEQQKQILRER--- 310

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  213 aiEKQAHKCEELLNAQHQRLLEMLDTEKELLKEkiKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAvkDAV 292
Cdd:TIGR02168  311 --LANLERQLEELEAQLEELESKLDELAEELAE--LEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL--ETL 384

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  293 LKVVEEERKNLEKAHAEERELwkTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIE 372
Cdd:TIGR02168  385 RSKVAQLELQIASLNNEIERL--EARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEA 462

                          250
                   ....*....|....*
gi 1200742280  373 YIKEQKRLDQVIRQR 387
Cdd:TIGR02168  463 LEELREELEEAEQAL 477
PTZ00121 PTZ00121
MAEBL; Provisional
 127-383 3.37e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 46.29  E-value: 3.37e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  127 ANVSNIQLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQALLQSS--VKQQVE 204
Cdd:PTZ00121  1260 ARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAdaAKKKAE 1339

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  205 AIEKQYISAIEKQAHKCEELLNAQHQRLLEMLDTEKEllkEKIKEALIQQSQEQK--EILEKCLEEERQRNKEalvsAAK 282
Cdd:PTZ00121  1340 EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA---KKKADAAKKKAEEKKkaDEAKKKAEEDKKKADE----LKK 1412

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  283 LEKEAVKDAVLKVVEEERKNLEKAHAEERELWKTEHAK---DQEKVSQEIQKAIQEQRKISQETVKAaiiEEQKRSEKAV 359
Cdd:PTZ00121  1413 AAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKkkaEEAKKAEEAKKKAEEAKKADEAKKKA---EEAKKADEAK 1489

                          250       260
                   ....*....|....*....|....*.
gi 1200742280  360 EEA--VKRTRDELIEYIKEQKRLDQV 383
Cdd:PTZ00121  1490 KKAeeAKKKADEAKKAAEAKKKADEA 1515
PTZ00121 PTZ00121
MAEBL; Provisional
 145-386 5.32e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.90  E-value: 5.32e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  145 LKVSEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQALLQSSVKQQVEAIEKQYISAIEKQAHKCEEL 224
Cdd:PTZ00121  1229 VKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAK 1308

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  225 LNAQHQRLLEMLDTEKELLKEKiKEALIQQSQEQKEILEKCLEEERQRNKEAlvSAAKLEKEAVKdavlKVVEEERKNLE 304
Cdd:PTZ00121  1309 KKAEEAKKADEAKKKAEEAKKK-ADAAKKKAEEAKKAAEAAKAEAEAAADEA--EAAEEKAEAAE----KKKEEAKKKAD 1381

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  305 KAHAEERELWKTEHAK----DQEKVSQEIQKAIQEQRKISQETVKAaiiEEQKRSEKAVEEAV-KRTRDELIEYIKEQKR 379
Cdd:PTZ00121  1382 AAKKKAEEKKKADEAKkkaeEDKKKADELKKAAAAKKKADEAKKKA---EEKKKADEAKKKAEeAKKADEAKKKAEEAKK 1458


                   ....*..
gi 1200742280  380 LDQVIRQ 386
Cdd:PTZ00121  1459 AEEAKKK 1465
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 149-387 6.20e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 45.44  E-value: 6.20e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  149 EEEKQRIKQDVESLMEKHNVLEKgfLKEKEQEAISFQDRYKELQALLQSSVKQQVEAIEKQY------ISAIEKQAHKCE 222
Cdd:TIGR02169  180 EEVEENIERLDLIIDEKRQQLER--LRREREKAERYQALLKEKREYEGYELLKEKEALERQKeaierqLASLEEELEKLT 257

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  223 ELLNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEAlvsAAKLEKEAVKDAVLKVVEEERKN 302
Cdd:TIGR02169  258 EEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIA---EKERELEDAEERLAKLEAEIDKL 334

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  303 LEKAHAEERELwkTEHAKDQEKVSQEIQKAIQEQRKISQEtvkaaiIEEqkrsekaVEEAVKRTRDELIEYikeQKRLDQ 382
Cdd:TIGR02169  335 LAEIEELEREI--EEERKRRDKLTEEYAELKEELEDLRAE------LEE-------VDKEFAETRDELKDY---REKLEK 396


                   ....*
gi 1200742280  383 VIRQR 387
Cdd:TIGR02169  397 LKREI 401
PRK12704 PRK12704
phosphodiesterase; Provisional
 139-299 7.60e-05

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 44.77  E-value: 7.60e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 139 SSLEIKLKVSEEEKQRIKQDVESLMEKHNvlekgflKEKEQEAisfQDRYKELQALLQSSVKQQVEAIEKQyisaiEKQA 218
Cdd:PRK12704   27 KIAEAKIKEAEEEAKRILEEAKKEAEAIK-------KEALLEA---KEEIHKLRNEFEKELRERRNELQKL-----EKRL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 219 HKCEELLNaqhqRLLEMLDTEKELLKEKIKEalIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEE 298
Cdd:PRK12704   92 LQKEENLD----RKLELLEKREEELEKKEKE--LEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEE 165


                  .
gi 1200742280 299 E 299
Cdd:PRK12704  166 E 166
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 133-315 1.66e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 43.89  E-value: 1.66e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  133 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGF------LKEKEQEAISFQDRYKELQALLQSSVKQQVEAI 206
Cdd:TIGR02168  327 ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELeelesrLEELEEQLETLRSKVAQLELQIASLNNEIERLE 406

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  207 EKQYISAIEKQAHKCEELLNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAklEKE 286
Cdd:TIGR02168  407 ARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAE--REL 484

                          170       180
                   ....*....|....*....|....*....
gi 1200742280  287 AVKDAVLKVVEEERKNLEKAHAEERELWK 315
Cdd:TIGR02168  485 AQLQARLDSLERLQENLEGFSEGVKALLK 513
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
119-387 1.86e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 43.90  E-value: 1.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 119 VDDSEDPGANVSNI--QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEK--GFLKEKEQEAISFQDRYKELQAL 194
Cdd:PRK03918  157 LDDYENAYKNLGEVikEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEisSELPELREELEKLEKEVKELEEL 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 195 lqssvKQQVEAIEKQyISAIEKQAHKCEELLNaQHQRLLEMLDTEKELLKEKIKEAL-IQQSQEQKEILEKCLEEERQRN 273
Cdd:PRK03918  237 -----KEEIEELEKE-LESLEGSKRKLEEKIR-ELEERIEELKKEIEELEEKVKELKeLKEKAEEYIKLSEFYEEYLDEL 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 274 KEALVSAAKLEKEA-VKDAVLKVVEEERKNLEKAHAEERELWKT-EHAKDQEKVSQEIQKAIQEQRKISQEtVKAAIIEE 351
Cdd:PRK03918  310 REIEKRLSRLEEEInGIEERIKELEEKEERLEELKKKLKELEKRlEELEERHELYEEAKAKKEELERLKKR-LTGLTPEK 388

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1200742280 352 QKRSEKAVEEAVKRTRDELIEYIKEQKRLDQVIRQR 387
Cdd:PRK03918  389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKEL 424
PTZ00121 PTZ00121
MAEBL; Provisional
 135-379 2.13e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.98  E-value: 2.13e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  135 QQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKG-FLKEKEQEAISFQDRYKELQALLQSSVKQQVEAIEKQYISA 213
Cdd:PTZ00121  1356 ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAdEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  214 IEKQAH----------KCEELLNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKL 283
Cdd:PTZ00121  1436 AKKKAEeakkadeakkKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  284 EK--EAVKDAVLKVVEEERKNLEKAHAEERElwKTEHAKDQEKV--SQEIQKAIQEQRKISQETVKAAIIEEQKRSEKAV 359
Cdd:PTZ00121  1516 KKaeEAKKADEAKKAEEAKKADEAKKAEEKK--KADELKKAEELkkAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEAR 1593

                          250       260
                   ....*....|....*....|
gi 1200742280  360 EEAVKRTRDELIEYIKEQKR 379
Cdd:PTZ00121  1594 IEEVMKLYEEEKKMKAEEAK 1613
PTZ00121 PTZ00121
MAEBL; Provisional
 144-402 2.46e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.59  E-value: 2.46e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  144 KLKVSEEEKQRIKQDVESLMEKHNVLEkgfLKEKEQEAISFQDRYKELQALLQSSVKQQvEAIEKQYISAIEKQAHKCEE 223
Cdd:PTZ00121  1422 EAKKKAEEKKKADEAKKKAEEAKKADE---AKKKAEEAKKAEEAKKKAEEAKKADEAKK-KAEEAKKADEAKKKAEEAKK 1497

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  224 LLNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEK-EAVKDAVLKVVEEERKN 302
Cdd:PTZ00121  1498 KADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKaEEKKKAEEAKKAEEDKN 1577

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  303 LEKAHAEERElwktehaKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQ 382
Cdd:PTZ00121  1578 MALRKAEEAK-------KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE 1650

                          250       260
                   ....*....|....*....|
gi 1200742280  383 VIRQRSLSSLELFLSCAQKQ 402
Cdd:PTZ00121  1651 ELKKAEEENKIKAAEEAKKA 1670
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
134-377 2.60e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 43.37  E-value: 2.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  134 LQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKgfLKEKEQEAISFQDRYKELQALlqssvKQQVEAIEK--QYI 211
Cdd:COG4913    615 LEAELAELEEELAEAEERLEALEAELDALQERREALQR--LAEYSWDEIDVASAEREIAEL-----EAELERLDAssDDL 687

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  212 SAIEKQAHKCEELLNAQHQRLLEmLDTEKELLKEKIKEA--LIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKeavk 289
Cdd:COG4913    688 AALEEQLEELEAELEELEEELDE-LKGEIGRLEKELEQAeeELDELQDRLEAAEDLARLELRALLEERFAAALGDA---- 762

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  290 davlkVVEEERKNLEkahaEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQE--TVKAAIIEEQKRSEKAVEEAVKRTR 367
Cdd:COG4913    763 -----VERELRENLE----ERIDALRARLNRAEEELERAMRAFNREWPAETADldADLESLPEYLALLDRLEEDGLPEYE 833

                          250
                   ....*....|
gi 1200742280  368 DELIEYIKEQ 377
Cdd:COG4913    834 ERFKELLNEN 843
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 174-386 3.91e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 42.74  E-value: 3.91e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  174 LKEKEQEAISFQDRYKELQALLQSSVK------QQVEAIEKQYISAiEKQAHKCEELLNAQHQRLLEMLDTEKELLKEKI 247
Cdd:TIGR02168  693 IAELEKALAELRKELEELEEELEQLRKeleelsRQISALRKDLARL-EAEVEQLEERIAQLSKELTELEAEIEELEERLE 771

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  248 KE-----ALIQQSQEQKEILEKcLEEERQRNKEALvSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQ 322
Cdd:TIGR02168  772 EAeeelaEAEAEIEELEAQIEQ-LKEELKALREAL-DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1200742280  323 EKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKaVEEAVKRTRDELIEYIKEQKRLDQVIRQ 386
Cdd:TIGR02168  850 LSEDIESLAAEIEELEELIEELESELEALLNERAS-LEEALALLRSELEELSEELRELESKRSE 912
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
133-305 1.16e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.44  E-value: 1.16e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  133 QLQQKISSLEIKLKVSEEEKQRIKQDVESLmekhnvlekgflkEKEQEAIsfQDRYKELQALLQSSVKQQVEAIEKQyIS 212
Cdd:COG4913    285 FAQRRLELLEAELEELRAELARLEAELERL-------------EARLDAL--REELDELEAQIRGNGGDRLEQLERE-IE 348

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  213 AIEKQAHKCEELLNAQHQRL----LEMLDTEKELlkekikEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEav 288
Cdd:COG4913    349 RLERELEERERRRARLEALLaalgLPLPASAEEF------AALRAEAAALLEALEEELEALEEALAEAEAALRDLRRE-- 420

                          170
                   ....*....|....*..
gi 1200742280  289 kdavLKVVEEERKNLEK 305
Cdd:COG4913    421 ----LRELEAEIASLER 433
PTZ00121 PTZ00121
MAEBL; Provisional
 220-382 1.20e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.28  E-value: 1.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  220 KCEELLNAQHQRLLEMLDTEKELLKekiKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEE 299
Cdd:PTZ00121  1213 KAEEARKAEDAKKAEAVKKAEEAKK---DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEK 1289

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  300 RKNLEKAHAEERElwKTEHAK---DQEKVSQEIQKAIQEQRKISQETVKAAiiEEQKRSEKAVEEAVKRTRDELiEYIKE 376
Cdd:PTZ00121  1290 KKADEAKKAEEKK--KADEAKkkaEEAKKADEAKKKAEEAKKKADAAKKKA--EEAKKAAEAAKAEAEAAADEA-EAAEE 1364


                   ....*.
gi 1200742280  377 QKRLDQ 382
Cdd:PTZ00121  1365 KAEAAE 1370
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 176-411 2.18e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.43  E-value: 2.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  176 EKEQEAISFQDRYKELQALLQSSVKQQVEAIEKQYISAIEKQAHKCEEL-------------LNAQHQRLLEMLDT---- 238
Cdd:TIGR02168  210 EKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELtaelqeleekleeLRLEVSELEEEIEElqke 289

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  239 ---------EKELLKEKIKEALiQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEavKDAVLKVVEEERKNLEKAHAE 309
Cdd:TIGR02168  290 lyalaneisRLEQQKQILRERL-ANLERQLEELEAQLEELESKLDELAEELAELEEK--LEELKEELESLEAELEELEAE 366

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  310 ERELwkTEHAKDQEKVSQEIQKAIQEQRKisQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQVIRQRSL 389
Cdd:TIGR02168  367 LEEL--ESRLEELEEQLETLRSKVAQLEL--QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAEL 442

                          250       260
                   ....*....|....*....|..
gi 1200742280  390 SSLELFLSCAQKQLSALIATEP 411
Cdd:TIGR02168  443 EELEEELEELQEELERLEEALE 464
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
126-377 2.61e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 40.05  E-value: 2.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 126 GANVSNIQLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKgfLKEKEQEAISFQDRYKELQALLQ------SSV 199
Cdd:PRK03918  242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE--LKEKAEEYIKLSEFYEEYLDELReiekrlSRL 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 200 KQQVEAIEKQyISAIEKQAHKCEELLNaqhqrLLEMLDTEKELLKEKIKE-ALIQQSQEQKEILEKCLEEERQRNKEALV 278
Cdd:PRK03918  320 EEEINGIEER-IKELEEKEERLEELKK-----KLKELEKRLEELEERHELyEEAKAKKEELERLKKRLTGLTPEKLEKEL 393

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 279 SAAKLEKEAVKDAVLKVVEE------ERKNLEKA------------------HAEERELWKTEHAKDQEKVSQEIQKAIQ 334
Cdd:PRK03918  394 EELEKAKEEIEEEISKITARigelkkEIKELKKAieelkkakgkcpvcgrelTEEHRKELLEEYTAELKRIEKELKEIEE 473

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1200742280 335 EQRKISQETVKAAII---EEQKRSEKAVEEAVKRTRDELIEYIKEQ 377
Cdd:PRK03918  474 KERKLRKELRELEKVlkkESELIKLKELAEQLKELEEKLKKYNLEE 519
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
133-285 2.85e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 39.75  E-value: 2.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 133 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEK-GFLKEKEQEAISFQDRYKELQALLQ--SSVKQQVEAIEKQ 209
Cdd:COG4717    92 ELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLyQELEALEAELAELPERLEELEERLEelRELEEELEELEAE 171

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1200742280 210 YISAIEKQAHKCEELLNAQHQRLLEMLDTEKELLKEkiKEALIQQSQEQKEILEKcLEEERQRNKEALVSAAKLEK 285
Cdd:COG4717   172 LAELQEELEELLEQLSLATEEELQDLAEELEELQQR--LAELEEELEEAQEELEE-LEEELEQLENELEAAALEER 244
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 206-408 2.90e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 39.92  E-value: 2.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 206 IEKQyISAIEKQAHKCEellnaQHQRLLEMLDT-EKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLE 284
Cdd:COG1196   198 LERQ-LEPLERQAEKAE-----RYRELKEELKElEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEE 271

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 285 KEAvkdavlkVVEEERKNLEKAHAEERELwKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVK 364
Cdd:COG1196   272 LRL-------ELEELELELEEAQAEEYEL-LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELE 343

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1200742280 365 RTRDELIEYIKEQKRLDQVIRQRSLSSLELFLSCAQKQLSALIA 408
Cdd:COG1196   344 EELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
 141-292 3.85e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 39.42  E-value: 3.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 141 LEIKLKVSEEEKQRIKQDVESLmekHNVLEKGFLKEKEQEaisfqDRYKELQALLQssvkqQVEAIEKQYISAIEKQAHK 220
Cdd:PRK00409  497 LGLPENIIEEAKKLIGEDKEKL---NELIASLEELERELE-----QKAEEAEALLK-----EAEKLKEELEEKKEKLQEE 563

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1200742280 221 CEELLNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEAL--VSAAKLEKEAVKDAV 292
Cdd:PRK00409  564 EDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANekKEKKKKKQKEKQEEL 637
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 127-362 4.48e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 39.04  E-value: 4.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 127 ANVSNIQLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGfLKEKEQEAISFQDRYKELQALLQSSVKQQVEAI 206
Cdd:COG3883    14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAE-LEALQAEIDKLQAEIAEAEAEIEERREELGERA 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 207 EKQYISaiEKQAHKCEELLNAQH--------QRLLEMLDTEKELLKEkiKEALIQQSQEQKEILEKCLEEERQRNKEALV 278
Cdd:COG3883    93 RALYRS--GGSVSYLDVLLGSESfsdfldrlSALSKIADADADLLEE--LKADKAELEAKKAELEAKLAELEALKAELEA 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 279 SAAKLEKE-AVKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEK 357
Cdd:COG3883   169 AKAELEAQqAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAG 248


                  ....*
gi 1200742280 358 AVEEA 362
Cdd:COG3883   249 AGAAG 253
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 144-334 4.67e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 39.34  E-value: 4.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 144 KLKVSEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQALLQSSVKQQVEAI----EKQYISAIEKQAH 219
Cdd:pfam17380 403 KVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLrqqeEERKRKKLELEKE 482

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 220 KCEELLNAQHQRLL---EMLDTEKELLKEKIKEALIQQSQE--QKEILEkclEEERQRNKEALVSAAKLEKEAVKDAVLK 294
Cdd:pfam17380 483 KRDRKRAEEQRRKIlekELEERKQAMIEEERKRKLLEKEMEerQKAIYE---EERRREAEEERRKQQEMEERRRIQEQMR 559

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1200742280 295 VVEEERKNLEkahAEERELWKTEHAKDQEKVSQEIQKAIQ 334
Cdd:pfam17380 560 KATEERSRLE---AMEREREMMRQIVESEKARAEYEATTP 596
PTZ00121 PTZ00121
MAEBL; Provisional
 132-378 5.74e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 39.35  E-value: 5.74e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  132 IQLQQKISSLEIKLKVSE---EEKQRIK-QDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQALLQSSVKQQVEAIE 207
Cdd:PTZ00121  1594 IEEVMKLYEEEKKMKAEEakkAEEAKIKaEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED 1673

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  208 KQyisaiekqahKCEELLNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEA 287
Cdd:PTZ00121  1674 KK----------KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDK 1743

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  288 VKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVK-----AAIIEEQKRSEKAVEEA 362
Cdd:PTZ00121  1744 KKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKdifdnFANIIEGGKEGNLVIND 1823

                          250
                   ....*....|....*.
gi 1200742280  363 VKRTRDELIEYIKEQK 378
Cdd:PTZ00121  1824 SKEMEDSAIKEVADSK 1839
PTZ00121 PTZ00121
MAEBL; Provisional
 146-410 6.87e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 38.97  E-value: 6.87e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  146 KVSEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQALL-----QSSVKQQVEAIEKQYISAIEKQAHK 220
Cdd:PTZ00121  1098 GKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKaedakRVEIARKAEDARKAEEARKAEDAKK 1177

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  221 CEELLNAQHQRLLEMLDTEKELlkEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEER 300
Cdd:PTZ00121  1178 AEAARKAEEVRKAEELRKAEDA--RKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIR 1255

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  301 KNLEKA---HAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAII----EEQKRSEKAVEEA--VKRTRDELI 371
Cdd:PTZ00121  1256 KFEEARmahFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAkkkaEEAKKADEAKKKAeeAKKKADAAK 1335

                          250       260       270
                   ....*....|....*....|....*....|....*....
gi 1200742280  372 EYIKEQKRLDQVIRQRSLSSLELFLSCAQKQLSALIATE 410
Cdd:PTZ00121  1336 KKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
174-349 8.07e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 38.60  E-value: 8.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 174 LKEKEQEAISFQDRYKELQALLQsSVKQQVEAIEKQyISAIEKQAHKCEELLNA--------QHQRLLEMLDTEKELLKE 245
Cdd:COG4717    76 LEEELKEAEEKEEEYAELQEELE-ELEEELEELEAE-LEELREELEKLEKLLQLlplyqeleALEAELAELPERLEELEE 153

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280 246 KIKEalIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKV--VEEERKNLEKAHAEERElwKTEHAKDQE 323
Cdd:COG4717   154 RLEE--LRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELeeLQQRLAELEEELEEAQE--ELEELEEEL 229

                         170       180
                  ....*....|....*....|....*.
gi 1200742280 324 KVSQEIQKAIQEQRKISQETVKAAII 349
Cdd:COG4717   230 EQLENELEAAALEERLKEARLLLLIA 255
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 234-407 9.71e-03

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 38.41  E-value: 9.71e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  234 EMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEER-KNLEKAHAEERE 312
Cdd:pfam02463  161 EAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLyLDYLKLNEERID 240

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200742280  313 LWKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKaVEEAVKRTRDELIEYIKEQKRLDQVIRQRSLSSL 392
Cdd:pfam02463  241 LLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQE-EELKLLAKEEEELKSELLKLERRKVDDEEKLKES 319

                          170
                   ....*....|....*
gi 1200742280  393 ELFLSCAQKQLSALI 407
Cdd:pfam02463  320 EKEKKKAEKELKKEK 334
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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