|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
468-722 |
1.60e-31 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 124.46 E-value: 1.60e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 468 LYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEAL 547
Cdd:COG2956 17 NYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 548 DCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPC 627
Cdd:COG2956 97 ELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPD 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 628 NIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVECLRFLVRLC 707
Cdd:COG2956 177 CARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLE 256
|
250
....*....|....*
gi 1216866289 708 TDLGLKDAQEYARKL 722
Cdd:COG2956 257 RKEGLEAALALLERQ 271
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
430-688 |
2.75e-31 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 123.69 E-value: 2.75e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 430 KAVTYLRQKDYNQAVEILKVLEKKDSRvKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDY 509
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPE-TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 510 EKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVS 589
Cdd:COG2956 93 DRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALK 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 590 VIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWqLMV 669
Cdd:COG2956 173 LDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-LAL 251
|
250
....*....|....*....
gi 1216866289 670 ASCFRRSGNYQKALDTYKD 688
Cdd:COG2956 252 ADLLERKEGLEAALALLER 270
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
489-655 |
3.96e-27 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 110.87 E-value: 3.96e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 489 DRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIA 568
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 569 NIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKA 648
Cdd:COG0457 84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163
|
....*..
gi 1216866289 649 IQYFERA 655
Cdd:COG0457 164 LELLEKL 170
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
461-618 |
2.60e-25 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 105.47 E-value: 2.60e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 461 AATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKL 540
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQAL 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1216866289 541 NRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYY 618
Cdd:COG0457 90 GRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
520-687 |
2.49e-23 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 99.70 E-value: 2.49e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 520 LRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLS 599
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 600 KLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNY 679
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
....*...
gi 1216866289 680 QKALDTYK 687
Cdd:COG0457 161 EEALELLE 168
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
531-726 |
5.02e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 96.72 E-value: 5.02e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 531 YNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGD 610
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 611 KSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTH 690
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190
....*....|....*....|....*....|....*..
gi 1216866289 691 RKFPENVECLRFLVRLCTDLG-LKDAQEYARKLKRLE 726
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGdYEEAIAALERALEQD 208
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
460-682 |
7.15e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 91.59 E-value: 7.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 460 AAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEK 539
Cdd:COG3914 11 ALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 540 LNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYY 619
Cdd:COG3914 91 LGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALR 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1216866289 620 ESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKA 682
Cdd:COG3914 171 RALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVY 233
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
458-594 |
9.09e-18 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 80.62 E-value: 9.09e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 458 KSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTY 537
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1216866289 538 EKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTD 594
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
505-659 |
4.42e-17 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 85.82 E-value: 4.42e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 505 ANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWL 584
Cdd:COG3914 90 ALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAAL 169
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1216866289 585 MQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQ 659
Cdd:COG3914 170 RRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALA 244
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
222-730 |
1.04e-16 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 85.14 E-value: 1.04e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 222 YAEALNTYQVIVKNKMFSNAGILkmNMGNIYLKQRNYSKAIKFYRMALDQVPSVNKQMRIKIMqnigVTFiQAGQYSDAI 301
Cdd:TIGR02917 209 IELALAAYRKAIALRPNNIAVLL--ALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKAL----VDF-QKKNYEDAR 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 302 NSYEHIMSMAPN-LKAGYNLTICYFAIGDREKMKKAFQKLItvpleidedKYISPSDDPHTNLVTEAIKN----DHLRQM 376
Cdd:TIGR02917 282 ETLQDALKSAPEyLPALLLAGASEYQLGNLEQAYQYLNQIL---------KYAPNSHQARRLLASIQLRLgrvdEAIATL 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 377 ERerkamAEKYIMTSAKLIAPVIETSFAAG-YDwcvevvKASQYVELANDLEIN-------KAVTYLRQKDYNQAVEILK 448
Cdd:TIGR02917 353 SP-----ALGLDPDDPAALSLLGEAYLALGdFE------KAAEYLAKATELDPEnaaartqLGISKLSQGDPSEAIADLE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 449 VLEKKDSRVKSAAAtnLSALYYM-GKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCT 527
Cdd:TIGR02917 422 TAAQLDPELGRADL--LLILSYLrSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFF 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 528 EALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDR 607
Cdd:TIGR02917 500 PAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLG 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 608 EGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYK 687
Cdd:TIGR02917 580 KGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLK 659
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 1216866289 688 DTHRKFPENVECLRFLVRLctDLGLKDAQEYARKLKRLEKMKE 730
Cdd:TIGR02917 660 RALELKPDNTEAQIGLAQL--LLAAKRTESAKKIAKSLQKQHP 700
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
494-626 |
1.41e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 77.15 E-value: 1.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 494 AALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYEL 573
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1216866289 574 MENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFP 626
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
561-696 |
4.86e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 75.61 E-value: 4.86e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 561 AEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYI 640
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1216866289 641 DTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPEN 696
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
511-618 |
7.93e-16 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 74.66 E-value: 7.93e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 511 KAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSV 590
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100
....*....|....*....|....*...
gi 1216866289 591 IPTDPQVLSKLGELYDREGDKSQAFQYY 618
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAW 108
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
212-721 |
9.37e-16 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 82.05 E-value: 9.37e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 212 LASQYSVNEMYAEALNTYQVIVKNKMfSNAGILKMnMGNIYLKQRNYSKAIKFyrmaLDQVPSVNKQMRIKIMQnIGVTF 291
Cdd:TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLDP-DDPAALSL-LGEAYLALGDFEKAAEY----LAKATELDPENAAARTQ-LGISK 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 292 IQAGQYSDAINSYEHIMSMAPNLK-AGYNLTICYFAIGDREKMKKAFQKLITvpleidedkyiSPSDDPHTNLVTEAIkn 370
Cdd:TIGR02917 408 LSQGDPSEAIADLETAAQLDPELGrADLLLILSYLRSGQFDKALAAAKKLEK-----------KQPDNASLHNLLGAI-- 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 371 dhlRQMERErKAMAEKYIMTSAKlIAPVIETSFA--AGYDWCVE-VVKASQYVE--LANDLEINKAVT-----YLRQKDY 440
Cdd:TIGR02917 475 ---YLGKGD-LAKAREAFEKALS-IEPDFFPAAAnlARIDIQEGnPDDAIQRFEkvLTIDPKNLRAILalaglYLRTGNE 549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 441 NQAVEILKVLEKKDSRvKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEAL 520
Cdd:TIGR02917 550 EEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL 628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 521 RNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSK 600
Cdd:TIGR02917 629 ALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFEL 708
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 601 LGELYDREGDKSQAFQYYYESYRYFPCNIEVIEwLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQ 680
Cdd:TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYD 787
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 1216866289 681 KALDTYKDTHRKFPENVECLRFLVRLCTDLGLKDAQEYARK 721
Cdd:TIGR02917 788 KAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAER 828
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
210-586 |
1.11e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 78.23 E-value: 1.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 210 FNLASQYSVNEMYAEALNTYQVIVKNKmfSNAGILKMNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIGV 289
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELD--PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD-----RAEALLELAQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 290 TFIQAGQYSDAINSYEHIMSMAPNLkagynlticyfaigdrekmKKAFQKLITVpleidedkyispsddphtnlvteaik 369
Cdd:COG2956 85 DYLKAGLLDRAEELLEKLLELDPDD-------------------AEALRLLAEI-------------------------- 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 370 ndhlrqmererkamaekyimtsakliapvietsfaagydwcvevvkasqyvelandleinkavtYLRQKDYNQAVEILKV 449
Cdd:COG2956 120 ----------------------------------------------------------------YEQEGDWEKAIEVLER 135
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 450 LEKKDSRvKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEA 529
Cdd:COG2956 136 LLKLGPE-NAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPA 214
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1216866289 530 LYNIGLTYEKLNRLDEALDcFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQ 586
Cdd:COG2956 215 LPRLAELYEKLGDPEEALE-LLRKALELDPSDDLLLALADLLERKEGLEAALALLER 270
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
429-586 |
7.58e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 75.04 E-value: 7.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 429 NKAVTYLRQKDYNQAVEIL-KVLEKKDSRVksAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANG 507
Cdd:COG0457 47 NLGLAYLRLGRYEEALADYeQALELDPDDA--EALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELG 124
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1216866289 508 DYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQ 586
Cdd:COG0457 125 RYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
524-662 |
1.08e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 69.07 E-value: 1.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 524 SSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGE 603
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1216866289 604 LYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQ 662
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
493-727 |
1.78e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 74.26 E-value: 1.78e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 493 PAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAI---------LRNSAEV 563
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAgeaaaaaaaLLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 564 LYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQ 643
Cdd:COG3914 81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 644 FWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVECLRFLVR-LCTDLGLKDAQEYARKL 722
Cdd:COG3914 161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFaLRQACDWEVYDRFEELL 240
|
....*
gi 1216866289 723 KRLEK 727
Cdd:COG3914 241 AALAR 245
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
248-696 |
1.04e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 68.96 E-value: 1.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 248 MGNIYLKQRNYSKAIKFYRMALDQVPSVNKQM----RIKIMQnigvtfiqaGQYSDAINSYEHIMSMAPNLKAGYN--LT 321
Cdd:TIGR02917 62 LGKIYLALGDYAAAEKELRKALSLGYPKNQVLpllaRAYLLQ---------GKFQQVLDELPGKTLLDDEGAAELLalRG 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 322 ICYFAIGDREKMKKAFQKlitvPLEIDEDKyispsddphtnlvTEAikndhlrQMERERKAMAEKYIMTSAKLIAPVIET 401
Cdd:TIGR02917 133 LAYLGLGQLELAQKSYEQ----ALAIDPRS-------------LYA-------KLGLAQLALAENRFDEARALIDEVLTA 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 402 SFAAGYDWCV--EVVKASQYVELANDleinkavtylrqkDYNQAVEilkvLEKKDSRVKSAAATNLSALyymgKDFAQAS 479
Cdd:TIGR02917 189 DPGNVDALLLkgDLLLSLGNIELALA-------------AYRKAIA----LRPNNIAVLLALATILIEA----GEFEEAE 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 480 SYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRN 559
Cdd:TIGR02917 248 KHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 560 SAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYY 639
Cdd:TIGR02917 328 SHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISK 407
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1216866289 640 IDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPEN 696
Cdd:TIGR02917 408 LSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDN 464
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
504-592 |
1.50e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 61.34 E-value: 1.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 504 FANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDcFLKLHAILRNSAEVLYQIANIYELMENPSQAIEW 583
Cdd:COG3063 3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81
|
....*....
gi 1216866289 584 LMQVVSVIP 592
Cdd:COG3063 82 LERALELDP 90
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
208-341 |
1.78e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 65.03 E-value: 1.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 208 VLFNLASQYSVNEMYAEALNTYQVIVKnkMFSNAGILKMNMGNIYLKQRNYSKAIKFYRMALDQVPSVnkqmrIKIMQNI 287
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALE--LDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD-----AEALNNL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1216866289 288 GVTFIQAGQYSDAINSYEHIMSMAP-NLKAGYNLTICYFAIGDREKMKKAFQKLI 341
Cdd:COG0457 83 GLALQALGRYEEALEDYDKALELDPdDAEALYNLGLALLELGRYDEAIEAYERAL 137
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
579-698 |
2.32e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 61.95 E-value: 2.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 579 QAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLI 658
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1216866289 659 QPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVE 698
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
596-726 |
5.63e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.98 E-value: 5.63e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 596 QVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRR 675
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1216866289 676 SGNYQKALDTYKDTHRKFPENVECLRFLVRLCTDLG-LKDAQEYARKLKRLE 726
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGrPDEAIAALEKALELD 136
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
156-340 |
6.91e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 65.78 E-value: 6.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 156 ELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVT-TPENinldltYSVLFNLASQYSVNEMYAEALNTYQVIVK 234
Cdd:COG3914 67 AAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAlNPDN------AEALFNLGNLLLALGRLEEALAALRRALA 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 235 NKMfSNAGILkMNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIGVTFIQAGQYSDAINSYEHIMSMAP-N 313
Cdd:COG3914 141 LNP-DFAEAY-LNLGEALRRLGRLEEAIAALRRALELDPD-----NAEALNNLGNALQDLGRLEEAIAAYRRALELDPdN 213
|
170 180
....*....|....*....|....*..
gi 1216866289 314 LKAGYNLTICYFAIGDREKMKKAFQKL 340
Cdd:COG3914 214 ADAHSNLLFALRQACDWEVYDRFEELL 240
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
474-626 |
8.77e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.13 E-value: 8.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 474 DFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKL 553
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1216866289 554 HAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFP 626
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
485-596 |
1.39e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 59.63 E-value: 1.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 485 AVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVL 564
Cdd:COG4235 9 ALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEAL 88
|
90 100 110
....*....|....*....|....*....|..
gi 1216866289 565 YQIANIYELMENPSQAIEWLMQVVSVIPTDPQ 596
Cdd:COG4235 89 YLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
416-556 |
2.55e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 59.59 E-value: 2.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 416 ASQYVELANDLEINKAVTYLRQKDYNQAVEILKVLEKKDSRVKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAA 495
Cdd:COG5010 11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1216866289 496 LTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAI 556
Cdd:COG5010 91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
207-341 |
2.96e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.05 E-value: 2.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 207 SVLFNLASQYSVNEMYAEALNTYQVIVKNKMfSNAGILKMnMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQN 286
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDP-DNPEAFAL-LGEILLQLGDLDEAIVLLHEALELDPD-----EPEARLN 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1216866289 287 IGVTFIQAGQYSDAINSYEHIMSMAP-NLKAGYNLTICYFAIGDREKMKKAFQKLI 341
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKLDPeHPEAYLRLARAYRALGRPDEAIAALEKAL 133
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
464-562 |
6.24e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 57.71 E-value: 6.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 464 NLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRL 543
Cdd:COG4235 22 LLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101
|
90
....*....|....*....
gi 1216866289 544 DEALDCFLKLHAILRNSAE 562
Cdd:COG4235 102 AEAIAAWQKLLALLPADAP 120
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
208-341 |
1.52e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 59.25 E-value: 1.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 208 VLFNLASQYSVNEMYAEALNTYQVIVKNKmFSNAGILkMNMGNIYLKQRNYSKAIKFYRMALDQVPSVnkqmrIKIMQNI 287
Cdd:COG0457 44 ALYNLGLAYLRLGRYEEALADYEQALELD-PDDAEAL-NNLGLALQALGRYEEALEDYDKALELDPDD-----AEALYNL 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1216866289 288 GVTFIQAGQYSDAINSYEHIMSMAPNL-KAGYNLTICYFAIGDREKMKKAFQKLI 341
Cdd:COG0457 117 GLALLELGRYDEAIEAYERALELDPDDaDALYNLGIALEKLGRYEEALELLEKLE 171
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
468-556 |
3.20e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.79 E-value: 3.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 468 LYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFyKEALRNDSSCTEALYNIGLTYEKLNRLDEAL 547
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
....*....
gi 1216866289 548 DCFLKLHAI 556
Cdd:COG3063 80 AYLERALEL 88
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
205-523 |
3.37e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 58.59 E-value: 3.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 205 TYSVLFNLASQYSVNEMYAEALNTYQVIVKNKmfSNAGILKMNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIM 284
Cdd:COG2956 41 TVEAHLALGNLYRRRGEYDRAIRIHQKLLERD--PDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPD-----DAEAL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 285 QNIGVTFIQAGQYSDAINSYEHIMSMAP-NLKAGYNLTICYFAIGDREKMKKAFQKLITVpleidedkyispsdDPHtnl 363
Cdd:COG2956 114 RLLAEIYEQEGDWEKAIEVLERLLKLGPeNAHAYCELAELYLEQGDYDEAIEALEKALKL--------------DPD--- 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 364 vteaikndhlrqmererkamaekyimtsakliapvietsfaagydwCVEVvkasqYVELANdleinkavTYLRQKDYNQA 443
Cdd:COG2956 177 ----------------------------------------------CARA-----LLLLAE--------LYLEQGDYEEA 197
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 444 VEILKVLEKKDSRvKSAAATNLSALYYMGKDFAQASSYADIAVNSDRyNPAALTNKGNTVFANGDYEKAAEFYKEALRND 523
Cdd:COG2956 198 IAALERALEQDPD-YLPALPRLAELYEKLGDPEEALELLRKALELDP-SDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
453-655 |
5.95e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 57.23 E-value: 5.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 453 KDSRVKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNP---AALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEA 529
Cdd:COG4785 30 LFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPdlaQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 530 LYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGeLYDREG 609
Cdd:COG4785 110 YNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLY-LAERKL 188
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1216866289 610 DKSQAFQYYYEsyryfpcnieviEWLGAYYIDTQFwEKAIQYFERA 655
Cdd:COG4785 189 DPEKALALLLE------------DWATAYLLQGDT-EEARELFKLA 221
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
504-597 |
9.34e-09 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 53.84 E-value: 9.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 504 FANGDYEKAAEFYKEALR---NDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNS---AEVLYQIANIYELMENP 577
Cdd:COG1729 4 LKAGDYDEAIAAFKAFLKrypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGDY 83
|
90 100
....*....|....*....|
gi 1216866289 578 SQAIEWLMQVVSVIPTDPQV 597
Cdd:COG1729 84 DKARATLEELIKKYPDSEAA 103
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
528-660 |
1.62e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 54.58 E-value: 1.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 528 EALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDR 607
Cdd:COG5010 21 RTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSR 100
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1216866289 608 EGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQP 660
Cdd:COG5010 101 SGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
537-626 |
2.87e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.09 E-value: 2.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 537 YEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEwLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQ 616
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 1216866289 617 YYYESYRYFP 626
Cdd:COG3063 81 YLERALELDP 90
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
246-341 |
3.25e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 53.09 E-value: 3.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 246 MNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIGVTFIQAGQYSDAINSYEHIMSMAP-NLKAGYNLTICY 324
Cdd:COG4235 21 LLLGRAYLRLGRYDEALAAYEKALRLDPD-----NADALLDLAEALLAAGDTEEAEELLERALALDPdNPEALYLLGLAA 95
|
90
....*....|....*..
gi 1216866289 325 FAIGDREKMKKAFQKLI 341
Cdd:COG4235 96 FQQGDYAEAIAAWQKLL 112
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
469-553 |
2.99e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 49.60 E-value: 2.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 469 YYMGKDFAQASSYADIAVN---SDRYNPAALTNKGNTVFANGDYEKAAEFYKEALR---NDSSCTEALYNIGLTYEKLNR 542
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKrypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKrypDSPKAPDALLKLGLSYLELGD 82
|
90
....*....|.
gi 1216866289 543 LDEALDCFLKL 553
Cdd:COG1729 83 YDKARATLEEL 93
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
431-523 |
3.96e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 49.62 E-value: 3.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 431 AVTYLRQKDYNQAVEIL-KVLEKKDSRVksAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDY 509
Cdd:COG4235 24 GRAYLRLGRYDEALAAYeKALRLDPDNA--DALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101
|
90
....*....|....
gi 1216866289 510 EKAAEFYKEALRND 523
Cdd:COG4235 102 AEAIAAWQKLLALL 115
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
252-341 |
7.24e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 48.45 E-value: 7.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 252 YLKQRNYSKAIKFYRMALDQVPsvNKQMRIKIMQNIGVTFIQAGQYSDAINSYEHIMSMAPN----LKAGYNLTICYFAI 327
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYP--NSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkaPDALLKLGLSYLEL 80
|
90
....*....|....
gi 1216866289 328 GDREKMKKAFQKLI 341
Cdd:COG1729 81 GDYDKARATLEELI 94
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
433-618 |
7.64e-07 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 51.83 E-value: 7.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 433 TYLRQKDYNQAVEILKVLEKKDSrVKSAAATNLSALYYMGKdFAQASSYAD--IAV-----NSDRYNPAALTNKGNTVFA 505
Cdd:COG3071 128 AYRQLGDWEELLELLPALRKHKA-LSAEEAQALERRAYLGL-LRQAARDAEalKALwkalpRAERRDPELAAAYARALIA 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 506 NGDYEKAAEFYKEALRNDSSctEALYNiglTYEKLNRLD-----EALDCFLKLHAilrNSAEVLYQIANIYELMENPSQA 580
Cdd:COG3071 206 LGDHDEAERLLREALKRQWD--PRLVR---LYGRLQGGDpakqlKRAEKWLKKHP---NDPDLLLALGRLCLRNQLWGKA 277
|
170 180 190
....*....|....*....|....*....|....*...
gi 1216866289 581 IEWLMQVVSVIPtDPQVLSKLGELYDREGDKSQAFQYY 618
Cdd:COG3071 278 REYLEAALALRP-SAEAYAELARLLEQLGDPEEAAEHY 314
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
570-660 |
1.08e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.47 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 570 IYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQyYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAI 649
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|.
gi 1216866289 650 QYFERASLIQP 660
Cdd:COG3063 80 AYLERALELDP 90
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
542-694 |
1.68e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.80 E-value: 1.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 542 RLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYES 621
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1216866289 622 YRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFP 694
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
434-525 |
1.87e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 46.70 E-value: 1.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 434 YLRQKDYNQAVEILKVLEKKDSRVkSAAATNLSALYYMGKDFAQASSYaDIAVNSDRYNPAALTNKGNTVFANGDYEKAA 513
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDN-ADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 1216866289 514 EFYKEALRNDSS 525
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
434-687 |
3.55e-06 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 49.91 E-value: 3.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 434 YLRQKDYNQAVEILKVLEKKDSRvkSAAATNLSA-LYYMGKDFAQASSYADIAVNSDRYNPAALTnkgntvfangDYEKA 512
Cdd:COG3071 95 LLDQGQAEQALATLEALRAGAPR--HPQVLRLLLqAYRQLGDWEELLELLPALRKHKALSAEEAQ----------ALERR 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 513 AefYKEALRNDSSCTEALYNIgltyekLNRLDEALdcflklhailRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIP 592
Cdd:COG3071 163 A--YLGLLRQAARDAEALKAL------WKALPRAE----------RRDPELAAAYARALIALGDHDEAERLLREALKRQW 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 593 tDPQVLSKLGELydREGDKSQAfqyyyesyryfpcnIEVIE-WLGAY-------------YIDTQFWEKAIQYFERASLI 658
Cdd:COG3071 225 -DPRLVRLYGRL--QGGDPAKQ--------------LKRAEkWLKKHpndpdlllalgrlCLRNQLWGKAREYLEAALAL 287
|
250 260
....*....|....*....|....*....
gi 1216866289 659 QPTQVKWQLMvASCFRRSGNYQKALDTYK 687
Cdd:COG3071 288 RPSAEAYAEL-ARLLEQLGDPEEAAEHYR 315
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
371-523 |
4.49e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 47.26 E-value: 4.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 371 DHLRQMERERKAMAEKYIMTSAKLIAPVIETSFAAGYDWCVEVVKASQYVELANDLEINKAVTYLRQKDYNQAVEILKVL 450
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1216866289 451 EKKDSRvKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRND 523
Cdd:COG5010 81 LQLDPN-NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
494-559 |
4.52e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.07 E-value: 4.52e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1216866289 494 AALTNKGNTVFANGDYEKAAEFYKEALR-------NDSSCT-EALYNIGLTYEKLNRLDEALDCFLKLHAILRN 559
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEiarrllgPDHPLTaTTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
251-341 |
5.79e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 45.55 E-value: 5.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 251 IYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIGVTFIQAGQYSDAInSYEHIMSMAP-NLKAGYNLTICYFAIGD 329
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPD-----NADALNNLGLLLLEQGRYDEAI-ALEKALKLDPnNAEALLNLAELLLELGD 74
|
90
....*....|..
gi 1216866289 330 REKMKKAFQKLI 341
Cdd:COG3063 75 YDEALAYLERAL 86
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
529-590 |
1.10e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.92 E-value: 1.10e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 529 ALYNIGLTYEKLNRLDEALDCFLKLHAILR--------NSAEVLYQIANIYELMENPSQAIEWLMQVVSV 590
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARrllgpdhpLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
250-341 |
1.13e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.11 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 250 NIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIGVTFIQAGQYSDAINSYEHIMSMAP-NLKAGYNLTICYFAIG 328
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDPN-----NPELYYNLALLYSRSGDKDEAKEYYEKALALSPdNPNAYSNLAALLLSLG 136
|
90
....*....|...
gi 1216866289 329 DREKMKKAFQKLI 341
Cdd:COG5010 137 QDDEAKAALQRAL 149
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
249-341 |
1.23e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 48.84 E-value: 1.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 249 GNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIGVTFIQAGQYSDAINSYEHIMSMAP-NLKAGYNLTICYFAI 327
Cdd:COG3914 85 ALLLQALGRYEEALALYRRALALNPD-----NAEALFNLGNLLLALGRLEEALAALRRALALNPdFAEAYLNLGEALRRL 159
|
90
....*....|....
gi 1216866289 328 GDREKMKKAFQKLI 341
Cdd:COG3914 160 GRLEEAIAALRRAL 173
|
|
| TPR |
COG0790 |
TPR repeat [General function prediction only]; |
401-618 |
1.91e-05 |
|
TPR repeat [General function prediction only];
Pssm-ID: 440553 [Multi-domain] Cd Length: 241 Bit Score: 46.85 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 401 TSFAAGYDWCVEVVKASQYVELANDLEINKAVTYLRQKDYNQAVEILKVLEKKDSRVKSAAATNLSALYYMG----KDFA 476
Cdd:COG0790 5 AAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGrgvpKDYE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 477 QASSYADIAVNSDryNPAALTNKGNtVFANG-----DYEKAAEFYKEALRNDSscTEALYNIGLTYEK----LNRLDEAL 547
Cdd:COG0790 85 KALEWFEKAAEQG--DAEAQYNLGL-MYEEGlgvpqDYAKALEWYEKAAEQGD--ADAQYNLGLLYLNgegvPKDPAKAA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1216866289 548 DCFLKlhAILRNSAEVLYQIANIYELME----NPSQAIEWLMQVVSVipTDPQVLSKLGELYDR----EGDKSQAFQYY 618
Cdd:COG0790 160 EWYRK--AAEQGDADAQYNLGVLYENGRgvpkDPAKALEWYRKAAEQ--GDADAQYNLGRLYLNgegvEKDLEKALRWL 234
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
434-522 |
2.22e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.21 E-value: 2.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 434 YLRQKDYNQAVEILKVLEKK--DSRVKSAAATNLSALYYMGKDFAQASSYADIAVN---SDRYNPAALTNKGNTVFANGD 508
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKrypDSPKAPDALLKLGLSYLELGD 82
|
90
....*....|....
gi 1216866289 509 YEKAAEFYKEALRN 522
Cdd:COG1729 83 YDKARATLEELIKK 96
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
626-725 |
2.75e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.61 E-value: 2.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 626 PCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVECLRFLVR 705
Cdd:COG4235 14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGL 93
|
90 100
....*....|....*....|.
gi 1216866289 706 LCTDLG-LKDAQEYARKLKRL 725
Cdd:COG4235 94 AAFQQGdYAEAIAAWQKLLAL 114
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
537-626 |
3.31e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.83 E-value: 3.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 537 YEKLNRLDEALDCFLKLHAILRNS---AEVLYQIANIYELMENPSQAIEWLMQVVSVIPTD---PQVLSKLGELYDREGD 610
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGD 82
|
90
....*....|....*.
gi 1216866289 611 KSQAFQYYYESYRYFP 626
Cdd:COG1729 83 YDKARATLEELIKKYP 98
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
505-647 |
3.49e-05 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 45.05 E-value: 3.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 505 ANGDYEKAAEFYKEALR-----NDSSctEALYNIGLTYEKLNRLDEALDcflklhailrnsaevLYQIAniyeLMENPSQ 579
Cdd:PRK02603 47 ADGEYAEALENYEEALKleedpNDRS--YILYNMGIIYASNGEHDKALE---------------YYHQA----LELNPKQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 580 aiewlmqvvsviptdPQVLSKLGELYDREGDKS--------------QAFQYYYESYRYFPCNieviewlgayYIDTQFW 645
Cdd:PRK02603 106 ---------------PSALNNIAVIYHKRGEKAeeagdqdeaealfdKAAEYWKQAIRLAPNN----------YIEAQNW 160
|
..
gi 1216866289 646 EK 647
Cdd:PRK02603 161 LK 162
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
208-313 |
3.70e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.41 E-value: 3.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 208 VLFNLASQYSVNEMYAEALNTYQVIVKnkMFSNAGILKMNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNI 287
Cdd:COG4783 40 AFALLGEILLQLGDLDEAIVLLHEALE--LDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPE-----HPEAYLRL 112
|
90 100
....*....|....*....|....*.
gi 1216866289 288 GVTFIQAGQYSDAINSYEHIMSMAPN 313
Cdd:COG4783 113 ARAYRALGRPDEAIAALEKALELDPD 138
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
604-695 |
3.92e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 43.24 E-value: 3.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 604 LYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQyFERASLIQPTQVKWQLMVASCFRRSGNYQKAL 683
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 1216866289 684 DTYKDTHRKFPE 695
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
243-313 |
4.06e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 42.37 E-value: 4.06e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1216866289 243 ILKMNMGNIYLKQRNYSKAIKFYRMALD---QVPSVNKQMRIKIMQNIGVTFIQAGQYSDAINSYEHIMSMAPN 313
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEiarRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| BamD |
COG4105 |
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ... |
479-724 |
5.62e-05 |
|
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 45.64 E-value: 5.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 479 SSYADIAVNSDrynPAALTNKGNTVFANGDYEKAAEFYKEALRN--DSSCTE-ALYNIGLTYEKLNRLDEALDC---FLK 552
Cdd:COG4105 21 SSFKKALKSWD---AEELYEEAKEALEKGDYEKAIKLFEELEPRypGSPYAEqAQLMLAYAYYKQGDYEEAIAAadrFIK 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 553 LHAILRNSAEVLYQIANI-YELMENPS-------QAIEWLMQVVSVIPTD---PQVLSKLGELYDREGDKSqafqyyyes 621
Cdd:COG4105 98 LYPNSPNADYAYYLRGLSyYEQSPDSDrdqtstrKAIEAFQELINRYPDSeyaEDAKKRIDELRDKLARKE--------- 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 622 yryfpcnIEViewlGAYYIDTQFWEKAIQYFerasliqptqvkwqlmvascfrrsgnyQKALDTYKDThrkfPENVECLR 701
Cdd:COG4105 169 -------LEV----ARYYLKRGAYVAAINRF---------------------------QNVLEDYPDT----PAVEEALY 206
|
250 260
....*....|....*....|....
gi 1216866289 702 FLVRLCTDLGLKD-AQEYARKLKR 724
Cdd:COG4105 207 LLVEAYYALGRYDeAQDAAAVLGK 230
|
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
417-543 |
8.86e-05 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 44.46 E-value: 8.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 417 SQYVELANdLEINKAvtYLRQKDYNQAVEILK-VLEK-KDSRVKSAAATNLSALYYMGKDFAQASSYADiAVNSDRYNPA 494
Cdd:COG2976 86 TAYAALAA-LLLAKA--AVDAGDLDKAAAQLQwVLDNaKDPALKALARLRLARVLLAQKKYDEALATLD-AVKPEAFAAL 161
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1216866289 495 ALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLtyeKLNRL 543
Cdd:COG2976 162 YAELRGDILLAQGDKAEARAAYQKALAALPEDAPLRQLLQM---KLDDL 207
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
428-700 |
1.02e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 46.23 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 428 INKAVTYLRQKDYNQAVEILKVLEKKDSRvksaaatNLSALYYMGKDFAQASSYADIAVNSDR-----YNPAALtnkgNT 502
Cdd:TIGR02917 26 IEAAKSYLQKNKYKAAIIQLKNALQKDPN-------DAEARFLLGKIYLALGDYAAAEKELRKalslgYPKNQV----LP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 503 VFA-----NGDYEKA-AEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMEN 576
Cdd:TIGR02917 95 LLArayllQGKFQQVlDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENR 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 577 PSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERAS 656
Cdd:TIGR02917 175 FDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALL 254
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1216866289 657 LIQPTQVK---WQLMVAscFRRsGNYQKALDTYKDTHRKFPENVECL 700
Cdd:TIGR02917 255 KKAPNSPLahyLKALVD--FQK-KNYEDARETLQDALKSAPEYLPAL 298
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
500-540 |
1.77e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 39.76 E-value: 1.77e-04
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1216866289 500 GNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKL 540
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
429-589 |
3.00e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 42.98 E-value: 3.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 429 NKAVTYLRQKDYNQAVEILKVLEKKDSRvKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGD 508
Cdd:COG4785 78 ERGVAYDSLGDYDLAIADFDQALELDPD-LAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGR 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 509 YEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRlDEALdcflklhailrnsAEVLYQIANIYELMENPSQAIEWLMQVV 588
Cdd:COG4785 157 YELAIADLEKALELDPNDPERALWLYLAERKLDP-EKAL-------------ALLLEDWATAYLLQGDTEEARELFKLAL 222
|
.
gi 1216866289 589 S 589
Cdd:COG4785 223 A 223
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
247-274 |
3.24e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.58 E-value: 3.24e-04
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
506-570 |
3.85e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 39.49 E-value: 3.85e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1216866289 506 NGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANI 570
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| SNAP |
pfam14938 |
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are ... |
238-329 |
4.39e-04 |
|
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are involved in vesicular transport between the endoplasmic reticulum and Golgi apparatus. They act as adaptors between SNARE (integral membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive factor). They are structurally similar to TPR repeats.
Pssm-ID: 405606 [Multi-domain] Cd Length: 273 Bit Score: 42.94 E-value: 4.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 238 FSNAGILKMNMGNIYLKQR-NYSKAIKFYRMALD-----QVPSVNKQMRIKIMQnigvTFIQAGQYSDAINSYEHI--MS 309
Cdd:pfam14938 102 FRRAAKHKKEIAELYEQELgDLEKAIEAYEQAADwyegeGASALANKCYLKVAD----LSAELEDYPKAIEIYEKVakNS 177
|
90 100 110
....*....|....*....|....*....|
gi 1216866289 310 MAPNL----------KAGynltICYFAIGD 329
Cdd:pfam14938 178 LENNLlkysvkeyflKAG----LCHLAAGD 203
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
412-614 |
5.11e-04 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 43.26 E-value: 5.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 412 EVVKASQYVELAND--LEInkavtYLRQKDYNQAVEILKVLEKKDS---RVKSA------AATNLSAlyymgKDFAQASS 480
Cdd:PRK11788 132 QLVDEGDFAEGALQqlLEI-----YQQEKDWQKAIDVAERLEKLGGdslRVEIAhfycelAQQALAR-----GDLDAARA 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 481 YADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRND----SSCTEALYNIgltYEKLNRLDEALDcFLKLHAI 556
Cdd:PRK11788 202 LLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDpeylSEVLPKLMEC---YQALGDEAEGLE-FLRRALE 277
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1216866289 557 LRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTdPQVLSKLGELYDREGDKSQA 614
Cdd:PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPS-LRGFHRLLDYHLAEAEEGRA 334
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
496-542 |
5.82e-04 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 41.58 E-value: 5.82e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1216866289 496 LTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNR 542
Cdd:PRK02603 75 LYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121
|
|
| SNAP |
cd15832 |
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ... |
238-339 |
5.94e-04 |
|
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.
Pssm-ID: 276937 [Multi-domain] Cd Length: 278 Bit Score: 42.57 E-value: 5.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 238 FSNAGILKMNMGNIYLKQR-NYSKAIKFYRMA-----LDQVPSVNKQMRIKIMQnigvTFIQAGQYSDAINSYEHI--MS 309
Cdd:cd15832 107 FRQAAKHLKEIAELYENELgDLDKAIEAYEQAadyyeGEGANSLANKCYLKVAD----LAAQLEDYDKAIEIYEQVarSS 182
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1216866289 310 MAPNL----------KAGynltICYFAIGDREKMKKAFQK 339
Cdd:cd15832 183 LENNLlkysakdyflKAG----LCHLAAGDVVAAQRALEK 218
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
246-274 |
6.06e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.79 E-value: 6.06e-04
10 20
....*....|....*....|....*....
gi 1216866289 246 MNMGNIYLKQRNYSKAIKFYRMALDQVPS 274
Cdd:pfam00515 5 YNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
208-339 |
6.74e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 43.44 E-value: 6.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 208 VLFNLASQYSVNEMYAEALNTYQVIVKnkMFSNAGILKMNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNI 287
Cdd:COG3914 148 AYLNLGEALRRLGRLEEAIAALRRALE--LDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPD-----NADAHSNL 220
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1216866289 288 GVTFIQAGQYSDAINSYEHIMSMAPNLKAGYNLTICYFAIGDREKMKKAFQK 339
Cdd:COG3914 221 LFALRQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALARA 272
|
|
| ANAPC3 |
pfam12895 |
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of ... |
481-552 |
7.92e-04 |
|
Anaphase-promoting complex, cyclosome, subunit 3; Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20.
Pssm-ID: 463743 [Multi-domain] Cd Length: 82 Bit Score: 39.16 E-value: 7.92e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1216866289 481 YADIAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSScTEALYNIGLTYEKLNRLDEALDCFLK 552
Cdd:pfam12895 11 LAERLLAAEPESPEDAYLLAQCLFLNGQYKRAYELLRKAKLNGSS-LGCRYLFAQCLLKLKKYDEALDALGK 81
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
638-726 |
8.32e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.38 E-value: 8.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 638 YYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDtYKDTHRKFPENVECLRFLVRLCTDLG-LKDAQ 716
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGdYDEAL 79
|
90
....*....|
gi 1216866289 717 EYARKLKRLE 726
Cdd:COG3063 80 AYLERALELD 89
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
216-312 |
8.99e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 40.71 E-value: 8.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 216 YSVNEMYAEALNTYQVIVKnkMFSNAGILKMNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIGVTFIQAG 295
Cdd:COG5010 64 YNKLGDFEESLALLEQALQ--LDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPD-----NPNAYSNLAALLLSLG 136
|
90
....*....|....*..
gi 1216866289 296 QYSDAINSYEHIMSMAP 312
Cdd:COG5010 137 QDDEAKAALQRALGTSP 153
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
528-552 |
9.07e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.40 E-value: 9.07e-04
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
168-546 |
1.03e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 42.76 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 168 GDLKLALEKAKDAgrkervlvrQREQVTTPENINLdltysvlfnLASQYSVNEMYAEALNTYQVIVKNKMFSNAGILKMn 247
Cdd:TIGR02917 581 GQLKKALAILNEA---------ADAAPDSPEAWLM---------LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL- 641
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 248 mGNIYLKQRNYSKAIKFYRMALDQVPSvNKQMRIKIMQnigvTFIQAGQYSDAINSYEHIMSMAPNLKAGYNLTI-CYFA 326
Cdd:TIGR02917 642 -ADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQ----LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGdLYLR 715
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 327 IGDREKMKKAFQKLITvpleidedkyISPSDDPHTNLvteaikndHLRQMERERKAMAEKYIMTSAKliapvietsfaag 406
Cdd:TIGR02917 716 QKDYPAAIQAYRKALK----------RAPSSQNAIKL--------HRALLASGNTAEAVKTLEAWLK------------- 764
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 407 ydwcvevvkasqyvELAND--LEINKAVTYLRQKDYNQAVEILKVLEKKDSrvKSAAA-TNLSALYYMGKDfAQASSYAD 483
Cdd:TIGR02917 765 --------------THPNDavLRTALAELYLAQKDYDKAIKHYQTVVKKAP--DNAVVlNNLAWLYLELKD-PRALEYAE 827
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1216866289 484 IAVNSDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEA 546
Cdd:TIGR02917 828 RALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890
|
|
| PRK09782 |
PRK09782 |
bacteriophage N4 receptor, outer membrane subunit; Provisional |
490-639 |
1.27e-03 |
|
bacteriophage N4 receptor, outer membrane subunit; Provisional
Pssm-ID: 236624 [Multi-domain] Cd Length: 987 Bit Score: 42.59 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 490 RYNPAALTNKGNTVFANGDYEkAAEFYKEALRNDSSCTEAL--------YNIGLTYEKLNRLDEALDcflklHAilrNSA 561
Cdd:PRK09782 539 DMSNEDLLAAANTAQAAGNGA-ARDRWLQQAEQRGLGDNALywwlhaqrYIPGQPELALNDLTRSLN-----IA---PSA 609
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1216866289 562 EVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYY 639
Cdd:PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN 687
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
209-313 |
1.36e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.60 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 209 LFNLASQYSVNEMYAEALNTYQVIVKNKmFSNAGILkMNMGNIYLKQRNYSKAIKFYRMALDQVPSvnkqmRIKIMQNIG 288
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLD-PDNADAL-LDLAEALLAAGDTEEAEELLERALALDPD-----NPEALYLLG 92
|
90 100
....*....|....*....|....*
gi 1216866289 289 VTFIQAGQYSDAINSYEHIMSMAPN 313
Cdd:COG4235 93 LAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
494-552 |
1.58e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 41.46 E-value: 1.58e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1216866289 494 AALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLK 552
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLR 59
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
208-342 |
2.08e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.61 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 208 VLFNLASQYSVNEMYAEALNTYQVIVKnKMFSNAGILKmNMGNIYLKQRNySKAIKFYRMALDQVPSVNKqmrikIMQNI 287
Cdd:TIGR02917 772 LRTALAELYLAQKDYDKAIKHYQTVVK-KAPDNAVVLN-NLAWLYLELKD-PRALEYAERALKLAPNIPA-----ILDTL 843
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1216866289 288 GVTFIQAGQYSDAINSYEHIMSMAP-NLKAGYNLTICYFAIGDREKMKKAFQKLIT 342
Cdd:TIGR02917 844 GWLLVEKGEADRALPLLRKAVNIAPeAAAIRYHLALALLATGRKAEARKELDKLLN 899
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
498-553 |
2.26e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 37.32 E-value: 2.26e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1216866289 498 NKGNTVFANGDYEKAAEFYKEALRNDSS---CTEALYNIGLTYEKLNRLDEALDCFLKL 553
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAA 60
|
|
| OM_YfiO |
TIGR03302 |
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ... |
493-571 |
2.48e-03 |
|
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274513 [Multi-domain] Cd Length: 235 Bit Score: 40.23 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 493 PAALTNKGNTVFANGDYEKAAEFYKEALRN--DSSCTE-ALYNIGLTYEKLNRLDEAL---DCFLKLHAILRNSAEVLYQ 566
Cdd:TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRypFSPYAEqAQLDLAYAYYKSGDYAEAIaaaDRFIRLHPNHPDADYAYYL 112
|
....*
gi 1216866289 567 IANIY 571
Cdd:TIGR03302 113 RGLSN 117
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
528-552 |
2.58e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.27 E-value: 2.58e-03
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
505-731 |
2.62e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.61 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 505 ANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEwL 584
Cdd:TIGR02917 34 QKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLD-E 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 585 MQVVSVIPTDPQ--VLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLgAYYIDTQF-WEKAIQYFERASLIQPT 661
Cdd:TIGR02917 113 LPGKTLLDDEGAaeLLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGL-AQLALAENrFDEARALIDEVLTADPG 191
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 662 QVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVECLRFLVRLctdlgLKDAQEYARKLKRLEKMKEI 731
Cdd:TIGR02917 192 NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATI-----LIEAGEFEEAEKHADALLKK 256
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
493-526 |
2.93e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.86 E-value: 2.93e-03
10 20 30
....*....|....*....|....*....|....
gi 1216866289 493 PAALTNKGNTVFANGDYEKAAEFYKEALRNDSSC 526
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
222-313 |
4.81e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.66 E-value: 4.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 222 YAEALNTYQVIVKN----KMFSNAgilKMNMGNIYLKQRNYSKAIKFYRMALDQVPsvNKQMRIKIMQNIGVTFIQAGQY 297
Cdd:COG1729 9 YDEAIAAFKAFLKRypnsPLAPDA---LYWLGEAYYALGDYDEAAEAFEKLLKRYP--DSPKAPDALLKLGLSYLELGDY 83
|
90
....*....|....*.
gi 1216866289 298 SDAINSYEHIMSMAPN 313
Cdd:COG1729 84 DKARATLEELIKKYPD 99
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
493-526 |
5.24e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 5.24e-03
10 20 30
....*....|....*....|....*....|....
gi 1216866289 493 PAALTNKGNTVFANGDYEKAAEFYKEALRNDSSC 526
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
467-525 |
5.60e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.16 E-value: 5.60e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1216866289 467 ALYYMGkDFAQASSYADIAVNSDRYNP---AALTNKGNTVFANGDYEKAAEFYKEALRNDSS 525
Cdd:pfam13432 6 AALRAG-DYDDAAAALEAALARFPESPdaaAALLLLGLAALRQGRLAEAAAAYRAALRAAPG 66
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
528-559 |
6.29e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 34.81 E-value: 6.29e-03
10 20 30
....*....|....*....|....*....|..
gi 1216866289 528 EALYNIGLTYEKLNRLDEALDCFLKLHAILRN 559
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
639-729 |
6.72e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.02 E-value: 6.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 639 YIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVECLRFLVRLCTDLG-LKDAQE 717
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGqDDEAKA 143
|
90
....*....|..
gi 1216866289 718 YARKLKRLEKMK 729
Cdd:COG5010 144 ALQRALGTSPLK 155
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
607-695 |
7.43e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.89 E-value: 7.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 607 REGDKSQAFQYYYESYRYFPCNI---EVIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQ---LMVASCFRRSGNYQ 680
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPdalLKLGLSYLELGDYD 84
|
90
....*....|....*
gi 1216866289 681 KALDTYKDTHRKFPE 695
Cdd:COG1729 85 KARATLEELIKKYPD 99
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
324-617 |
8.62e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 39.68 E-value: 8.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 324 YFAIGDREKMKKAFQKLitvpLEIDEDKYIspsddPHTNLV-TEAIKNDHLRQMERERKAMAEKYIMTSAKLiapvIETS 402
Cdd:TIGR02917 611 QLAAGDLNKAVSSFKKL----LALQPDSAL-----ALLLLAdAYAVMKNYAKAITSLKRALELKPDNTEAQI----GLAQ 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 403 FAAGYDWCVEVVKASQYVELANDLEINK----AVTYLRQKDYNQAVEILKVlekkdsrvksaaatnlsalyymgkdFAQA 478
Cdd:TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHPKAALGfeleGDLYLRQKDYPAAIQAYRK-------------------------ALKR 732
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216866289 479 SSYADIAVNSDRYnpaaltnkgntVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILR 558
Cdd:TIGR02917 733 APSSQNAIKLHRA-----------LLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAP 801
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1216866289 559 NSAEVLYQIANIYELMENPsQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQY 617
Cdd:TIGR02917 802 DNAVVLNNLAWLYLELKDP-RALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPL 859
|
|
| |
