|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
727-1345 |
1.63e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.29 E-value: 1.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 727 IAELTSQV-----QAAQKKE-ERLQEEVRRLKQEKQALHVDLEMMRKERDLAKVQavcksgdkgfELKLLHDKHREEVTE 800
Cdd:COG1196 195 LGELERQLeplerQAEKAERyRELKEELKELEAELLLLKLRELEAELEELEAELE----------ELEAELEELEAELAE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 801 LKKRLQwyaKNQELLDKDAARLHAATAEIQKLTEQVEKLKAEVSRRANEQQRKAKEKAGEAKRIQDLERQLKQKEELLKR 880
Cdd:COG1196 265 LEAELE---ELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 881 rhpnslpalILAAASTGAEEDRLDVRSLAQSSQTAALLERRVHRLEAELEGRDEAAKRSLRAMEQQYHRIKlQYEQQISD 960
Cdd:COG1196 342 ---------LEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE-ELEEAEEA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 961 LEQRLSEkshsypaisseliksHTQTLKAELEEVKEVHQKQVSVLQAEVDSLQEQLRQAQASTQTEKPARSPSRHQLHAE 1040
Cdd:COG1196 412 LLERLER---------------LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1041 AAQAARIERLTQELNSKSRsiqeltrtieRLQRERRTMLSGPSHERPNNEPKRHLGTAKDTKKPSVETFPPTQDEkdyhp 1120
Cdd:COG1196 477 AALAELLEELAEAAARLLL----------LLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALE----- 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1121 gAFSGTHISEVQLENDSLRTKLEELEVLREKEKVSLQAAVTHAQNQLLRIEEQN----------AEQLTSVKAEHRKEIE 1190
Cdd:COG1196 542 -AALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARgaigaavdlvASDLREADARYYVLGD 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1191 HLLARHALEHSSSRVAELTSQLNTQEIIVQHLQGQVKELQGTKEALAVTKLREETLQNQLSKLLEELKEAKEAHSPELKH 1270
Cdd:COG1196 621 TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1220274030 1271 FTSLEQKIQSMEFRYSQREKQLQQVIADTRRVVEQEQQSEVERWRKLAQGRAKELEAFRMELDSILDVLRELQRQ 1345
Cdd:COG1196 701 AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
711-1327 |
4.00e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.67 E-value: 4.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 711 IQRTIRERSIVDQSFNIAELTSQVQAAQKKEERLQEEVRRLKQEKQALHVDLEMMRKERDlakvqavcksgdkgfELKLL 790
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELE---------------ELELE 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 791 HDKHREEVTELKKRLqwyAKNQELLDKDAARLHAATAEIQKLTEQVEKLKAEVSRRANEQQRKAKEKAGEAKRIQDLERQ 870
Cdd:COG1196 283 LEEAQAEEYELLAEL---ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 871 LKQKEELLKRrhpnslpalILAAASTGAEEDRLDVRSLAQSSQTAALLERRVHRLEAELEGRDEAAKRSLRAMEQQYHRI 950
Cdd:COG1196 360 LAEAEEALLE---------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEAL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 951 kLQYEQQISDLEQRLSEKshsypaisselikshtQTLKAELEEVKEVHQKQVSVLQAEVDSLQEQLRQAQASTQTEKPAR 1030
Cdd:COG1196 431 -AELEEEEEEEEEALEEA----------------AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1031 SpSRHQLHAEAAQAARIERLTQELNSKSRSIQELTRTI------ERLQRERRTMLSGPSHERPNNEPKRHLGTAKDTKKP 1104
Cdd:COG1196 494 L-LLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIgveaayEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1105 SVETFPPTQDEkdyhpgafsGTHISEVQLENDSLRTKLEELEVLREKEKVSLQAAVTHAQNQLLRIEEQNAEQLTSVKAE 1184
Cdd:COG1196 573 RATFLPLDKIR---------ARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLA 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1185 HRKEIEHLLARHALEHSSSRVAELTSQLNTQEIIVQHLQGQVKELQGTKEALAVTKLREETLQNQLSKLLEELKEAKEAH 1264
Cdd:COG1196 644 GRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEE 723
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1220274030 1265 spELKHFTSLEQKIQSMEFRYSQREKQLQQVIADtrrVVEQEQQSEVERWRKLAQGRAKELEA 1327
Cdd:COG1196 724 --EALEEQLEAEREELLEELLEEEELLEEEALEE---LPEPPDLEELERELERLEREIEALGP 781
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
575-1079 |
3.18e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.59 E-value: 3.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 575 ASLERLRLQLAKKERELSLREDQLQEQHKqELTALRQENYILQSKLHRAEEASNKRkwsfgEASDPVTEEKLKLIEKEMK 654
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEA-ELEELRLELEELELELEEAQAEEYEL-----LAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 655 EQETLIQGYHQENEKLYLQMKALQAQSKQNEEALfmenQRLLTELSFARDRMNTNNIQRTIRERSIVDQSFNIAELTSQV 734
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEEL----EEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 735 QAAQKKEERLQEEVRRLKQEKQALHVDLEMMRKERDLAKVQAVcksgdkgFELKLLHDKHREEVTELKKRLQWYAKNQEL 814
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA-------ELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 815 LDKDAARLHAATAEIQKLTEQVEKLKAEVSRR-ANEQQRKAKEKAGEAKRIQDLERQLKQKEELLKRRHPNSLPALILAA 893
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLlLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 894 ASTGAEEDRLDVRSLAQSSQTAALLER----RVHRLEAELEGRDEAAKRSLRAMEQQYHRIKLQYEQQISDLEQRLSEKS 969
Cdd:COG1196 542 AALAAALQNIVVEDDEVAAAAIEYLKAakagRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDT 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 970 HSYPAISSELIKSHTQTLKAELEEVKEVHQKQVSVLQAEVDSLQEQLRQAQASTQTEKPARSPSRHQLHAEAAQAARIER 1049
Cdd:COG1196 622 LLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLA 701
|
490 500 510
....*....|....*....|....*....|
gi 1220274030 1050 LTQELNSKSRSIQELTRTIERLQRERRTML 1079
Cdd:COG1196 702 EEEEERELAEAEEERLEEELEEEALEEQLE 731
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
575-1078 |
6.59e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 6.59e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 575 ASLERLRLQLAKKERELSLREDQLQEQhKQELTALRQENYILQSKLHRAEE--ASNKRKWSFGEASDPVTEEKLKLIEKE 652
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEEL-ELELEEAQAEEYELLAELARLEQdiARLEERRRELEERLEELEEELAELEEE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 653 MKEQETLIQGYHQENEKLYLQMKALQAQSKQNEEALfmenQRLLTELSFARDRMNTNNIQRTIRERSIVDQSFNIAELTS 732
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEAL----LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 733 QVQAAQKKEERLQEEVRRLKQEKQALHVDLEMMRKE-----RDLAKVQAVCKSGDKGFELKLLHDKHREEVTELKKRLQW 807
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEAleeaaEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 808 YAKNQELLDKDAARLHAATAEIQKLTEQVEKLK-------------------AEVSRRANEQQRKAKEKAGEAKRIQDLE 868
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRglagavavligveaayeaaLEAALAAALQNIVVEDDEVAAAAIEYLK 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 869 RQLKQKEELLKRRHPNSLPALILAAASTGAEEDRLDVRSLAQSSQTAALLERRVHRLEAELEGRDEAAKRSLRAMEQQYH 948
Cdd:COG1196 568 AAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 949 RIKLQYEqqisDLEQRLSEKSHSypAISSELIKSHTQTLKAELEEVKEVHQKQVSVLQAEVDSLQEQLRQAQASTQTEKP 1028
Cdd:COG1196 648 EVTLEGE----GGSAGGSLTGGS--RRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 1220274030 1029 ARSPSRHQLHAEAAQAARIERLTQELNSKSR--------SIQELTRTIERLQRERRTM 1078
Cdd:COG1196 722 EEEALEEQLEAEREELLEELLEEEELLEEEAleelpeppDLEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
577-1345 |
7.17e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 7.17e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 577 LERLRLQLAKKERELSLREDQLQEQHKqELTALRQENYILQSKLHRAEEasNKRkwsfgeasdpVTEEKLKLIEKEMKEQ 656
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEE-EIEELQKELYALANEISRLEQ--QKQ----------ILRERLANLERQLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 657 ETLIQGYHQENEKLYLQMKALQAQS---KQNEEALFMENQRLLTELSFARDRMNTNNIQRTIRERSIVDQSFNIAELTSQ 733
Cdd:TIGR02168 322 EAQLEELESKLDELAEELAELEEKLeelKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 734 VQAAQKKEERLQEEVRRLKQEKQalhvDLEMMRKERDLAKVQAvcKSGDKGFELKLLHDKHREEVTELKKRLQWYAKNQE 813
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIE----ELLKKLEEAELKELQA--ELEELEEELEELQEELERLEEALEELREELEEAEQ 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 814 LLDKDAARLHAATAEIQKLTEQVEKLKAEvSRRANEQQRKAKEKAGEAKRIQDLERQLKQKEELLKrrhpNSLPALILAA 893
Cdd:TIGR02168 476 ALDAAERELAQLQARLDSLERLQENLEGF-SEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIE----AALGGRLQAV 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 894 ASTGAEEDRLDVRSLAQSSQTAALL---------------------ERRVHRLEAELEGRDEAAKRSLRAMEQQYH---- 948
Cdd:TIGR02168 551 VVENLNAAKKAIAFLKQNELGRVTFlpldsikgteiqgndreilknIEGFLGVAKDLVKFDPKLRKALSYLLGGVLvvdd 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 949 -------RIKLQYEQQISDLEQRL-----------SEKSHSYPAISSElIKSHTQTLKAELEEVKEVhQKQVSVLQAEVD 1010
Cdd:TIGR02168 631 ldnalelAKKLRPGYRIVTLDGDLvrpggvitggsAKTNSSILERRRE-IEELEEKIEELEEKIAEL-EKALAELRKELE 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1011 SLQEQLRQAQASTQTEKPARSPSRHQLhaeAAQAARIERLTQELNSKSRSIQELTRTIERLQRERrtmlsgpsherpnNE 1090
Cdd:TIGR02168 709 ELEEELEQLRKELEELSRQISALRKDL---ARLEAEVEQLEERIAQLSKELTELEAEIEELEERL-------------EE 772
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1091 PKRHLGTAKDTKKpsvetfpptQDEKDyhpgafsgthISEVQLENDSLRTKLEELevlrEKEKVSLQAAVTHAQNQLLRI 1170
Cdd:TIGR02168 773 AEEELAEAEAEIE---------ELEAQ----------IEQLKEELKALREALDEL----RAELTLLNEEAANLRERLESL 829
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1171 EEQNAEQLTSVKAEHRKEIEhllARHALEHSSSRVAELTSQLNTQEIIVQHLQgqvKELQGTKEALAVTKLREETLQNQL 1250
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEE---LSEDIESLAAEIEELEELIEELESELEALL---NERASLEEALALLRSELEELSEEL 903
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1251 SKLLEELKEAKEAHSPELKHFTSLEQKIQSMEfrysQREKQLQQVIADTRRVVEQEQQSEVERWRKLAQGRAKELEAFRM 1330
Cdd:TIGR02168 904 RELESKRSELRRELEELREKLAQLELRLEGLE----VRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979
|
810
....*....|....*....
gi 1220274030 1331 ELDSI----LDVLRELQRQ 1345
Cdd:TIGR02168 980 KIKELgpvnLAAIEEYEEL 998
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
573-1325 |
1.67e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 69.40 E-value: 1.67e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 573 ELASLERLRLQLAKKERELSLREDQLQEQHKQELTALRQENYILQSK-LHRAEEASNKRKWSFGEASDPVTEEKLKLIEK 651
Cdd:PTZ00121 1091 EATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEdARKAEEARKAEDAKRVEIARKAEDARKAEEAR 1170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 652 EMKEQETLIQGYHQENEKLYLQMKALQaQSKQNEEALFMENQRLLTELSFARDrmntnniQRTIRERSIVDQSFNIAElt 731
Cdd:PTZ00121 1171 KAEDAKKAEAARKAEEVRKAEELRKAE-DARKAEAARKAEEERKAEEARKAED-------AKKAEAVKKAEEAKKDAE-- 1240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 732 sqvQAAQKKEERLQEEVRRLKQEKQALHVDLEMMRKERDLAKVQAVCKSGDKGFELKLLHDKHREEVTELKKRLQwYAKN 811
Cdd:PTZ00121 1241 ---EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAE-EAKK 1316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 812 QELLDKDAARLHAATAEIQKLTEQVEKlKAEVSRRANEQQRKAKEKAGEAKRIQDLER-QLKQKEELLKRRHPNSLPAli 890
Cdd:PTZ00121 1317 ADEAKKKAEEAKKKADAAKKKAEEAKK-AAEAAKAEAEAAADEAEAAEEKAEAAEKKKeEAKKKADAAKKKAEEKKKA-- 1393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 891 lAAASTGAEEDRLDVRSLAQSSQTAALLERRVHRLEaELEGRDEAAKRSLRAMEQQYHRIKLQYEQQISDLEQRLSEKSH 970
Cdd:PTZ00121 1394 -DEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAE-EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 971 SYPAISSELIKSHTQTLKAELEEVKEvhQKQVSVLQAEVDSLQEQLRQAQASTQTEKPARSPSRHQlhAEAAQAARIERL 1050
Cdd:PTZ00121 1472 ADEAKKKAEEAKKADEAKKKAEEAKK--KADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK--ADEAKKAEEKKK 1547
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1051 TQELNSKS--RSIQELTRTIE-RLQRERRTMLSGPSHERPNNEPKRHLGTAKDTKKPSVETFPPTQDEKDYHPGAFSGTH 1127
Cdd:PTZ00121 1548 ADELKKAEelKKAEEKKKAEEaKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK 1627
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1128 ISEVQLENDSLRTKLEE-----LEVLREKEKVSLQAAvthaqnQLLRIEEQN---AEQLTSVKAEHRKEIEHLLArhalE 1199
Cdd:PTZ00121 1628 AEEEKKKVEQLKKKEAEekkkaEELKKAEEENKIKAA------EEAKKAEEDkkkAEEAKKAEEDEKKAAEALKK----E 1697
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1200 HSSSRVAELTSQLNTQEiivqhlqgqVKELQGTKEALAVTKLREETLQNQLSkllEELKEAKEAHSPELKhftslEQKIQ 1279
Cdd:PTZ00121 1698 AEEAKKAEELKKKEAEE---------KKKAEELKKAEEENKIKAEEAKKEAE---EDKKKAEEAKKDEEE-----KKKIA 1760
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 1220274030 1280 SMEfrySQREKQLQQVIADTRRVVEQEQQSEVERWRKLAQGRAKEL 1325
Cdd:PTZ00121 1761 HLK---KEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDI 1803
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
673-1345 |
5.29e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 5.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 673 QMKALQAQSKQNEEALFMENQR-------LLTELSFARDRMNTNNIQRTIRERSIVDQSFNIAELTSQV-------QAAQ 738
Cdd:TIGR02168 201 QLKSLERQAEKAERYKELKAELrelelalLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLeelrlevSELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 739 KKEERLQEEVRRLKQEKQALHVDLEMMRKERDLAKVQAVCKSGDKGfELKLLHDKHREEVTELKKRLQWYAKNQELLDKD 818
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE-ELESKLDELAEELAELEEKLEELKEELESLEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 819 AARLHaatAEIQKLTEQVEKLKAEVSRRANEQQRKAKEKAGEAKRIQDLERQLKQKEELLKRRHpNSLPALILAAASTGA 898
Cdd:TIGR02168 360 LEELE---AELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQ-QEIEELLKKLEEAEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 899 EEDRLDVRSLAQSSQTAALLERRVHRLEAELEGRDEAAKRSLRAMEQQYHRIKLQYEqQISDLEQRLSEKSHSYPAI--S 976
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD-SLERLQENLEGFSEGVKALlkN 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 977 SELIKSHTQTLkAELEEVKEVHQKQVSV-----LQA-EVDSLQEQLRQAQASTQTEKPARSPSRHQLHAEAAQAARIERL 1050
Cdd:TIGR02168 515 QSGLSGILGVL-SELISVDEGYEAAIEAalggrLQAvVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREI 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1051 TQELNSKSRSIQELTRTIERLQRERRTMLSGpshERPNNEPKRHLGTAKdtKKPSVETFPPTQDEKDYHPGAFSGTH--- 1127
Cdd:TIGR02168 594 LKNIEGFLGVAKDLVKFDPKLRKALSYLLGG---VLVVDDLDNALELAK--KLRPGYRIVTLDGDLVRPGGVITGGSakt 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1128 ---ISEVQLENDSLRTKLEELEV-LREKEKV---------SLQAAVTHAQNQLLRIEEQNAEQLTSVkAEHRKEIEHLLA 1194
Cdd:TIGR02168 669 nssILERRREIEELEEKIEELEEkIAELEKAlaelrkeleELEEELEQLRKELEELSRQISALRKDL-ARLEAEVEQLEE 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1195 RhaLEHSSSRVAELTSQLNTQEIIVQHLQGQVKELQGTKEALavtKLREETLQNQLSKLLEELKEAKEAHSPELKHFTSL 1274
Cdd:TIGR02168 748 R--IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL---EAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1220274030 1275 EQKIQSMEFRYSQREKQLQQVIADTRRVVEQEQQSEVErwrkLAQGRAkELEAFRMELDSILDVLRELQRQ 1345
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE----IEELEE-LIEELESELEALLNERASLEEA 888
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
573-1079 |
1.17e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.50 E-value: 1.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 573 ELASLERLRLQLAKKERELSLREDQLQEQHKQELTALRQenyiLQSKLHRAEEASNKRKWSFGEASDPVTEEKLKLIEKE 652
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEE----LEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 653 MKEQETLIQGYHQENEKLylQMKALQAQSKQNEEALFMENQRLLTELSFARDRMNTNNIQRTIRERSIVDQSFNIAELTS 732
Cdd:COG1196 379 EELEELAEELLEALRAAA--ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 733 QVQAAQKKEERLQEEVRRLKQEKQALHVDLEMMRKERDLAKVQAVCKSGDKGFELKLLHDKHREEVTELKKRLQWYAKNQ 812
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAY 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 813 ELLDKDAA---RLHAATAEIQKLTEQVEKLKAEVSRRANEQqrkAKEKAGEAKRIQDLERQLKQKEELLKRRHPNSLPAL 889
Cdd:COG1196 537 EAALEAALaaaLQNIVVEDDEVAAAAIEYLKAAKAGRATFL---PLDKIRARAALAAALARGAIGAAVDLVASDLREADA 613
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 890 ILAAASTGAEEDRLDVRSLAQSSQTAALLERRVHRLEAELEGRDEAAKRSLRAMEQQYHRI----KLQYEQQISDLEQRL 965
Cdd:COG1196 614 RYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALleaeAELEELAERLAEEEL 693
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 966 SEKSHSYPAISSELIKSHTQTLKAELEEVKEVHQKQVSVLQAEVDSLQEQLRQAQASTQTEKPARSPSRHQLHAE----- 1040
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERElerle 773
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1220274030 1041 -----------------AAQAARIERLTQELNSKSRSIQELTRTIERLQRERRTML 1079
Cdd:COG1196 774 reiealgpvnllaieeyEELEERYDFLSEQREDLEEARETLEEAIEEIDRETRERF 829
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
735-1326 |
6.02e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.39 E-value: 6.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 735 QAAQKKEERLQEEVRRLKQEKQALhvdlEMMRKERDLAKVQAVCKSGD--KGFELKLLHDKHREEVT---ELKKRLQWYA 809
Cdd:PTZ00121 1095 EAFGKAEEAKKTETGKAEEARKAE----EAKKKAEDARKAEEARKAEDarKAEEARKAEDAKRVEIArkaEDARKAEEAR 1170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 810 KNQELLDKDAARLHAATAEIQKLTEQVEKLKAEVSRRAnEQQRKAKE--KAGEAKRIQDLER--QLKQKEELLKRrhpns 885
Cdd:PTZ00121 1171 KAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKA-EEERKAEEarKAEDAKKAEAVKKaeEAKKDAEEAKK----- 1244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 886 lpalilaaastgAEEDRLDVRSLAQSSQTAALLERRVHRLEAELEGRDEAAKRSLRAMEQQYHRiKLQYEQQISDLEQRL 965
Cdd:PTZ00121 1245 ------------AEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAK-KAEEKKKADEAKKKA 1311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 966 SEKSHSYPAIS-SELIKSHTQTLKAELEEVKevhqKQVSVLQAEVDSLQEQLRQAQASTQTEKPARSPSRHQLHaEAAQA 1044
Cdd:PTZ00121 1312 EEAKKADEAKKkAEEAKKKADAAKKKAEEAK----KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKAD-AAKKK 1386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1045 ARIERLTQELNSKSrsiQELTRTIERLQRERRTMLSGPSHERPNNEPKRhlgtAKDTKKPSVETFPPTQDEKDYHPG--A 1122
Cdd:PTZ00121 1387 AEEKKKADEAKKKA---EEDKKKADELKKAAAAKKKADEAKKKAEEKKK----ADEAKKKAEEAKKADEAKKKAEEAkkA 1459
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1123 FSGTHISEVQLENDSLRTKLEELEVLREKEKVSLQAAVTHAQNQLLRIEEQNAEQLTsvKAEHRKEIEHllARHALEHSS 1202
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK--KAEEAKKADE--AKKAEEAKK 1535
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1203 SRVAELTSQLNTQEiivqhlqgQVKELQGTKEALAVTKL----REETLQNQLSKLLEELKEAKEAHSPELKHFTSLEQKI 1278
Cdd:PTZ00121 1536 ADEAKKAEEKKKAD--------ELKKAEELKKAEEKKKAeeakKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKM 1607
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 1220274030 1279 QSMEFRYSQREKQLQQVI---ADTRRVVEQEQQSEVERWRKLAQGRAKELE 1326
Cdd:PTZ00121 1608 KAEEAKKAEEAKIKAEELkkaEEEKKKVEQLKKKEAEEKKKAEELKKAEEE 1658
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
652-1346 |
6.08e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 64.17 E-value: 6.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 652 EMKEQETLIQGYHQENEKLYLQMKALQAQSKQNEEAlfmenQRLLTELSFARDRMNTNNIQRTIRErsivdqsfniaelt 731
Cdd:COG4913 229 ALVEHFDDLERAHEALEDAREQIELLEPIRELAERY-----AAARERLAELEYLRAALRLWFAQRR-------------- 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 732 sqVQAAQKKEERLQEEVRRLKQEKQALHVDLEMMRKERDLAKVQavcKSGDKGFELKLLhdkhREEVTELKKRLQWYAKN 811
Cdd:COG4913 290 --LELLEAELEELRAELARLEAELERLEARLDALREELDELEAQ---IRGNGGDRLEQL----EREIERLERELEERERR 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 812 QELLDKDAARLH-AATAEIQKLTEQVEKLKAEVSRRANEQQRKAKEKAGEAKRIQDLERQLKQKEELLK--RRHPNSLPA 888
Cdd:COG4913 361 RARLEALLAALGlPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIAslERRKSNIPA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 889 LILA-----AASTGAEEDRL-------DVRSLAQSSQTAAllERRVHRLEAELEGRDEAAKRSLRAMEQQYHRIKLQYEQ 956
Cdd:COG4913 441 RLLAlrdalAEALGLDEAELpfvgeliEVRPEEERWRGAI--ERVLGGFALTLLVPPEHYAAALRWVNRLHLRGRLVYER 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 957 QISDLEQRLSEKSHSyPAISSEL-IKSH--TQTLKAELEEVKEVHQkqvsvlqaeVDSLQEQLRQAQASTQT-------- 1025
Cdd:COG4913 519 VRTGLPDPERPRLDP-DSLAGKLdFKPHpfRAWLEAELGRRFDYVC---------VDSPEELRRHPRAITRAgqvkgngt 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1026 --EKPARS--PSRHQLHAEAAqaARIERLTQELNSKSRSIQELTRTIERLQRERrtmlsgpsherpnnepkrhlgtakdt 1101
Cdd:COG4913 589 rhEKDDRRriRSRYVLGFDNR--AKLAALEAELAELEEELAEAEERLEALEAEL-------------------------- 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1102 kkpsvetfpptqdekdyhpgafsgthisevqlenDSLRTKLEELEVLREkekvslqaavthaqnqlLRIEEQNAEQLTSV 1181
Cdd:COG4913 641 ----------------------------------DALQERREALQRLAE-----------------YSWDEIDVASAERE 669
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1182 KAEHRKEIEHLLArhalehSSSRVAELTSQLNTQEIIVQHLQGQVKELQGTKEALAVTKLREETLQNQLSKLLEELKEAK 1261
Cdd:COG4913 670 IAELEAELERLDA------SSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLA 743
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1262 EAHspelkHFTSLEQKIQSMEFRysQREKQLQQVIADTRRVVEQEQQSEVERWRKLAQ-------GRAKELEAFRMELDS 1334
Cdd:COG4913 744 RLE-----LRALLEERFAAALGD--AVERELRENLEERIDALRARLNRAEEELERAMRafnrewpAETADLDADLESLPE 816
|
730
....*....|..
gi 1220274030 1335 ILDVLRELQRQG 1346
Cdd:COG4913 817 YLALLDRLEEDG 828
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
565-1342 |
3.89e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 61.53 E-value: 3.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 565 QEKMDGGPELASLERLRLQLAKKERELSLREDQLQEQHKQELTALRQENYILQSKLHRAEEASNKRKWSFGEASDPVTEE 644
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 645 KLKLIEKEMKEQETLIQGYHQENEKLYLQMKALQAQSKQNEEALFMENQRlltelsfardrmNTNNIQRTIRERSIVDQS 724
Cdd:pfam02463 246 LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEE------------EELKSELLKLERRKVDDE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 725 FNIAELTSQVQAAQKKEERLQEEVRRLKQEKQalhvdlemmrkerDLAKVQAVCKSGDKGFELKLLHDKHREEVTELKKR 804
Cdd:pfam02463 314 EKLKESEKEKKKAEKELKKEKEEIEELEKELK-------------ELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKK 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 805 LQWYAKNQELLDKDAARLHAATaEIQKLTEQVEKLKAEVSRRANEQQRKAKEKAGEAKRIQDLERQLKQKEELLKRRHPn 884
Cdd:pfam02463 381 LESERLSSAAKLKEEELELKSE-EEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQEL- 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 885 SLPALILAAASTGAEEDRLDVRSLAQSSQTAALLERRVHRLEAELEGRDEaAKRSLRAMEQQYHRIKLQYEQQISDLEQR 964
Cdd:pfam02463 459 KLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSG-LKVLLALIKDGVGGRIISAHGRLGDLGVA 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 965 LSEKSHsypAISSELIKSHTQTLKAELEEVKEVHQKQVSVLQAEVDSLQEQLRQAQASTQTEKPARSPSRHQLHAEAAQA 1044
Cdd:pfam02463 538 VENYKV---AISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLE 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1045 ARIERLTQELNSKSRSIQELTRTIERLQRERRTMLSGPSHERPNNEPKRHLGTAKDTKKPSVETFPPTQDEKDYHPGAFS 1124
Cdd:pfam02463 615 ADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEI 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1125 GTHISEVQLENDSLRTKLEELEVLREKEKVSLQAAVTHAQNQLLRIEEQNAEQLTSVKAEHRKEIEHLLARHALEHSSSR 1204
Cdd:pfam02463 695 LRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEK 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1205 VAELTSQLNTQEIIVQHLQGQVKELQGTKEALAVTKLREETLQNQLSKLLEELKEAKEAHSPELKHFTSLEQKIQSMEFR 1284
Cdd:pfam02463 775 ELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEE 854
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 1220274030 1285 YSQREKQLQQVIADTRRVVEQEQQSEVERWRKLAQGRAKELEAFRMELDSILDVLREL 1342
Cdd:pfam02463 855 ELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLL 912
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
792-1033 |
9.78e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.01 E-value: 9.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 792 DKHREEVTELKKRLQWYAKNQELLDKDAARLHAATAEIQKLTEQVEKLKAEVSRRANEQQRKAKEKAGEAKRIQDLERQL 871
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 872 KQKEELLKRRhpnslpaliLAAASTGAEEDRLDvrsLAQSSQTAALLERRVHRLEAELEGRDEAAkRSLRAMEQQYHRIK 951
Cdd:COG4942 100 EAQKEELAEL---------LRALYRLGRQPPLA---LLLSPEDFLDAVRRLQYLKYLAPARREQA-EELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 952 LQYEQQISDLEQRLSEKSHSYPAISSEliKSHTQTLKAELEEVKEVHQKQVSVLQAEVDSLQEQLRQAQASTQTEKPARS 1031
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEAL--KAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
..
gi 1220274030 1032 PS 1033
Cdd:COG4942 245 AA 246
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
737-1054 |
2.28e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.77 E-value: 2.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 737 AQKKEERLQEEVRRLKQEKQALHVDLEMMRKERD-LAKVQAVCKSGDKGFELKLLHDKHREEVTELKKRLqwyaknqell 815
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEERLEALEAELDaLQERREALQRLAEYSWDEIDVASAEREIAELEAEL---------- 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 816 dkdaARLHAATAEIQKLTEQVEKLKAEVsRRANEQQRKAKEKAGEakriqdLERQLKQKEELLKRrhpnslpalilaaas 895
Cdd:COG4913 678 ----ERLDASSDDLAALEEQLEELEAEL-EELEEELDELKGEIGR------LEKELEQAEEELDE--------------- 731
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 896 tgaEEDRLDVRSLAQSSQTAALLERRVHRLeaeleGRDEAAKRSLRAMEQQYHRIKLQYEQQISDLEQRLSEKSHSYPAI 975
Cdd:COG4913 732 ---LQDRLEAAEDLARLELRALLEERFAAA-----LGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAE 803
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 976 SSELIKShtqtlKAELEEVKEVHQKQVSVLQAEvdsLQEQLRQAQASTQTEKpaRSPSRHQLHAEAAQA-ARIERLTQEL 1054
Cdd:COG4913 804 TADLDAD-----LESLPEYLALLDRLEEDGLPE---YEERFKELLNENSIEF--VADLLSKLRRAIREIkERIDPLNDSL 873
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
820-1311 |
3.80e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.86 E-value: 3.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 820 ARLHAATAEIQKLTEQVEKLKAEVSRRANEQQRKAKEKAGEAKRIQDLERQLKQKEELLKRRhpnslpalilaaastgAE 899
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAE----------------LE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 900 EDRLDVRSLAQSSQTAALLERRvHRLEAELEGRDEAAKRsLRAMEQQYHRIKLQY---EQQISDLEQRLSEKSHSYPAIS 976
Cdd:COG4717 113 ELREELEKLEKLLQLLPLYQEL-EALEAELAELPERLEE-LEERLEELRELEEELeelEAELAELQEELEELLEQLSLAT 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 977 SELIKSHTQTLKaELEEVKEVHQKQVSVLQAEVDSLQEQLRQAQASTQTEKPARSPSRHQLHAEA-AQAARIERLTQELN 1055
Cdd:COG4717 191 EEELQDLAEELE-ELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIaAALLALLGLGGSLL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1056 SKSRSIQELTRTI------ERLQRERRTMLSGPSHERPNNEPKRHLGTAKDTKKpsvetfpptQDEKDYHPGAFSGTHIS 1129
Cdd:COG4717 270 SLILTIAGVLFLVlgllalLFLLLAREKASLGKEAEELQALPALEELEEEELEE---------LLAALGLPPDLSPEELL 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1130 EVQLENDSLRTKLEELEVLREkekvslqaavthaQNQLLRIEEQNAEQLTSVKAEHRKEIEHLLARHALEHS-SSRVAEL 1208
Cdd:COG4717 341 ELLDRIEELQELLREAEELEE-------------ELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQElKEELEEL 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1209 TSQLNTQEIIVQHLQGQV------KELQGTKEALAVTKLREETLQNQLSKLLEELKEAKEAHS-PELKH-FTSLEQKIQS 1280
Cdd:COG4717 408 EEQLEELLGELEELLEALdeeeleEELEELEEELEELEEELEELREELAELEAELEQLEEDGElAELLQeLEELKAELRE 487
|
490 500 510
....*....|....*....|....*....|.
gi 1220274030 1281 MEFRYSQReKQLQQVIADTRRVVEQEQQSEV 1311
Cdd:COG4717 488 LAEEWAAL-KLALELLEEAREEYREERLPPV 517
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
412-1002 |
4.78e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.23 E-value: 4.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 412 EEIRRLmqEQDTSSQEPPPLKPKKRQVPARSNASTSASSRKAPVPSVRVKKPESKPLH--RVPAPSRAAQAAKPPSpptL 489
Cdd:PTZ00121 1209 EEERKA--EEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHfaRRQAAIKAEEARKADE---L 1283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 490 RKAQNQtfKKTQNLNQTHTIKGLDTSLKLSSELVESVQSFAAFLQHQVEASSLQDKGPfQANKIASEAMTAHKGMQEKMD 569
Cdd:PTZ00121 1284 KKAEEK--KKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAE-EAKKAAEAAKAEAEAAADEAE 1360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 570 GGPELASLERLRLQLAKKERElSLREDQLQEQHKQELTALRQENYILQSKLHRAEEASNKRKWSFGEASDPVTEEKLKLI 649
Cdd:PTZ00121 1361 AAEEKAEAAEKKKEEAKKKAD-AAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKK 1439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 650 EKEMKEQETLIQGYHQENEKLYLQMKALQAQS-----KQNEEALFM--------ENQRLLTELSFARDRMNTNNIQRTIR 716
Cdd:PTZ00121 1440 AEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKadeakKKAEEAKKAdeakkkaeEAKKKADEAKKAAEAKKKADEAKKAE 1519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 717 ERSIVDQSfNIAELTSQVQAAQKKEE-------RLQEEVRRLKQEKQALHVDLEMMRKERDLAKVQAVCKSGDKGFE--L 787
Cdd:PTZ00121 1520 EAKKADEA-KKAEEAKKADEAKKAEEkkkadelKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEevM 1598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 788 KLLHDKHREEVTELKKRLQWYAKNQEL-----LDKDAARLHAATAEIQKLTEQVEKLKAEVSRRANEQQRKAKEKAGEAK 862
Cdd:PTZ00121 1599 KLYEEEKKMKAEEAKKAEEAKIKAEELkkaeeEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE 1678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 863 RIQDLERQLKQKEELLKRRhpnslpalilaaastgaEEDRLDVRSLAQSSQTAALLERRVHRLEAELEGRDEAAKRSLRA 942
Cdd:PTZ00121 1679 EAKKAEEDEKKAAEALKKE-----------------AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 943 MEQQYHRIKLQYEQQisdleQRLSEKSHSYPAISSELIKSHTQTLKAELEEVKEVHQKQV 1002
Cdd:PTZ00121 1742 DKKKAEEAKKDEEEK-----KKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEV 1796
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
577-1260 |
4.95e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 57.67 E-value: 4.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 577 LERLRLQLAKKERELSLREDQLQEQhkQELTALRQENYILQSKLHRAEEASNKRKWSFGEASDPVTEEKLKLIEKEMKEQ 656
Cdd:TIGR00618 235 LQQTQQSHAYLTQKREAQEEQLKKQ--QLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRI 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 657 ETLIQGYHQENEKLYLQMKALQAQSKQNEEALFMENQRLLTELSFARDrmntNNIQRTIRERSivdqsfniaeltSQVQA 736
Cdd:TIGR00618 313 HTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDA----HEVATSIREIS------------CQQHT 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 737 AQKKEERLQEEVRRLKQEKQALHVDLEMMRKERDLAKVQAVCKSGDKGfelKLLHdKHREEVTELKKRLQWYAKNQElld 816
Cdd:TIGR00618 377 LTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQG---QLAH-AKKQQELQQRYAELCAAAITC--- 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 817 kdaaRLHAATAEIQKLTEQVEKLKAEVSRRANEQQRKAKEKAGEAKRIQDLERQLKQKEELLKR-RHPNslpalilaAAS 895
Cdd:TIGR00618 450 ----TAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGScIHPN--------PAR 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 896 TGAEEDRLDVRSLAQSSQTAALLERRVHRLEAELegrDEAAKRSLRAMEQqyhriklqyEQQISDLEQRLSEKSHSYPAI 975
Cdd:TIGR00618 518 QDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQL---TSERKQRASLKEQ---------MQEIQQSFSILTQCDNRSKED 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 976 SSELIKShTQTLKAELEEVKEVHQKQVSVLQAEVDSLQEQLRQAQASTQTEKPARSPSRHQLHAEAAQaarIERLTQELN 1055
Cdd:TIGR00618 586 IPNLQNI-TVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQ---LTLTQERVR 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1056 SKSRSIQELTrtiERLQRERRTMLSGPSHERPNNEPKRHLGTAKDTKKPSVETFPPTQDEKDYHPGAFSGTHISEVQLEN 1135
Cdd:TIGR00618 662 EHALSIRVLP---KELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAARE 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1136 DSLRTKLEELevlREKEKVSLQAAVTHAQNQLLRI--------EEQNAEQLTSVKAEHRKEIEHLLARHALEHSSSRVAE 1207
Cdd:TIGR00618 739 DALNQSLKEL---MHQARTVLKARTEAHFNNNEEVtaalqtgaELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSD 815
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1220274030 1208 LTSQLNTQEIIVQHLQ-------------GQVKELQGTkeaLAVTKLREETLQNQLSKLLEELKEA 1260
Cdd:TIGR00618 816 EDILNLQCETLVQEEEqflsrleeksatlGEITHQLLK---YEECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
727-1081 |
1.36e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.93 E-value: 1.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 727 IAELTSQVQAAQKKEERLQEEVRRLKQEKQALHVDLEMMRKERDLAKVQAvcksgdkgfELKLLhDKHREEVTELKKRLQ 806
Cdd:COG4717 97 LEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPE---------RLEEL-EERLEELRELEEELE 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 807 WYAKNQELLDKDAARLHAAT-----AEIQKLTEQVEKLKAEVsRRANEQQRKAKEKAGEAKRIQDLERQLKQKEELLKRR 881
Cdd:COG4717 167 ELEAELAELQEELEELLEQLslateEELQDLAEELEELQQRL-AELEEELEEAQEELEELEEELEQLENELEAAALEERL 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 882 HPNSLPALILAAASTGAEEDRLDVRSLAQSSQTAALLERRVHRLEAELEGRDEAAKRSLRAMEQQYHRIKLQyEQQISDL 961
Cdd:COG4717 246 KEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELE-EEELEEL 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 962 EQRLSEKSHSYPAISSELIKSHTQTLKAELEEVKEVHQKQVSVLQAEVDSL---------------------QEQLRQAQ 1020
Cdd:COG4717 325 LAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALlaeagvedeeelraaleqaeeYQELKEEL 404
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1220274030 1021 ASTQTEKPARSPSRHQLHA---EAAQAARIERLTQELNSKSRSIQELTRTIERLQRERRTMLSG 1081
Cdd:COG4717 405 EELEEQLEELLGELEELLEaldEEELEEELEELEEELEELEEELEELREELAELEAELEQLEED 468
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
819-1076 |
1.87e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.16 E-value: 1.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 819 AARLHAATAEIQKLTEQVEKLKAEVSRRANEQQRKAKEKAGEAKRIQDLERQLKQKEELLKRRHpnslpalilaaastga 898
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALE---------------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 899 eedrldvRSLAQSSQTAALLERRVHRLEAELEGRDEAAKRSLRAMEQ--QYHRIKLQYEQQISDLEQRLSEKSHSYPAIS 976
Cdd:COG4942 76 -------QELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRlgRQPPLALLLSPEDFLDAVRRLQYLKYLAPAR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 977 SELIKSHTQTLkAELEEVKEVHQKQVSVLQAEVDSLQEQLRQAQASTQtekparspSRHQLHAEAAQaaRIERLTQELNS 1056
Cdd:COG4942 149 REQAEELRADL-AELAALRAELEAERAELEALLAELEEERAALEALKA--------ERQKLLARLEK--ELAELAAELAE 217
|
250 260
....*....|....*....|
gi 1220274030 1057 KSRSIQELTRTIERLQRERR 1076
Cdd:COG4942 218 LQQEAEELEALIARLEAEAA 237
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
809-1048 |
2.29e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 54.84 E-value: 2.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 809 AKNQELLDKDAARLHAATAEIQKLTEQVEKLKAEVSrRANEQQRKAKEKAGEA-KRIQDLERQLKQKEELLKRR------ 881
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYN-ELQAELEALQAEIDKLqAEIAEAEAEIEERREELGERaralyr 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 882 --HPNSLPALILAAASTGAEEDRLDVRSLAQSSQTAALLErrVHRLEAELEGRDEAAKRSLRAMEQQyhriKLQYEQQIS 959
Cdd:COG3883 98 sgGSVSYLDVLLGSESFSDFLDRLSALSKIADADADLLEE--LKADKAELEAKKAELEAKLAELEAL----KAELEAAKA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 960 DLEQRLSEKSHSYPAISSEliKSHTQTLKAELEEVKEVHQKQVSVLQAEVDSLQEQLRQAQASTQTEKPARSPSRHQLHA 1039
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAE--EAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGA 249
|
....*....
gi 1220274030 1040 EAAQAARIE 1048
Cdd:COG3883 250 GAAGAAGAA 258
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
676-885 |
2.31e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.77 E-value: 2.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 676 ALQAQSKQNEEAlfmENQRLLTELSFARDRMNTNNIQRTIRERSIVDQSFNIAELTSQVQAAQKKEERLQEEVRRLKQEK 755
Cdd:COG4942 16 AAQADAAAEAEA---ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 756 QALHVDLEmmRKERDLAK-VQAVCKSGDKGFELKLLH------------------DKHREEVTELKKRLQWYAKNQELLD 816
Cdd:COG4942 93 AELRAELE--AQKEELAElLRALYRLGRQPPLALLLSpedfldavrrlqylkylaPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1220274030 817 KDAARLHAATAEIQKLTEQVEKLKAE-------VSRRANEQQRKAKEKAGEAKRIQDLERQLKQKEELLKRRHPNS 885
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAErqkllarLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
577-1078 |
3.34e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.92 E-value: 3.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 577 LERLRLQLAKKERELSLREDQLqEQHKQELTALRQEnyILQSKLHRAEEAsnkrkwsfgeasdpvtEEKLKLIEKEMKEQ 656
Cdd:COG4913 297 LEELRAELARLEAELERLEARL-DALREELDELEAQ--IRGNGGDRLEQL----------------EREIERLERELEER 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 657 ETLIQGYHQeneklylQMKALQAQSKQNEEAlFMENQRLLTELsfardrmntnnIQRTIRERSIVDQsfNIAELTSQVQA 736
Cdd:COG4913 358 ERRRARLEA-------LLAALGLPLPASAEE-FAALRAEAAAL-----------LEALEEELEALEE--ALAEAEAALRD 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 737 AQKKEERLQEEVRRLKQEKQALHVDLEMMRKE------RDLAKVQAVC-----KSGDKGFEL---KLLH---------DK 793
Cdd:COG4913 417 LRRELRELEAEIASLERRKSNIPARLLALRDAlaealgLDEAELPFVGelievRPEEERWRGaieRVLGgfaltllvpPE 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 794 HREEVTE------LKKRLQWYAKNQELLDKDAARLHAATaeiqkLTEQVEK--------LKAEVSRRAN-EQQRKAKEKA 858
Cdd:COG4913 497 HYAAALRwvnrlhLRGRLVYERVRTGLPDPERPRLDPDS-----LAGKLDFkphpfrawLEAELGRRFDyVCVDSPEELR 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 859 GEAKRIQdLERQLKQKEELL---KRRHPNSLPALilaaastGAE-EDRLDV--RSLAQSSQTAALLERRVHRLEAELEGR 932
Cdd:COG4913 572 RHPRAIT-RAGQVKGNGTRHekdDRRRIRSRYVL-------GFDnRAKLAAleAELAELEEELAEAEERLEALEAELDAL 643
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 933 DEAAKRSLRAMEQQYHRIKL-QYEQQISDLEQRLSEKSHSYPAIssELIKSHTQTLKAELEEVKEVH---QKQVSVLQAE 1008
Cdd:COG4913 644 QERREALQRLAEYSWDEIDVaSAEREIAELEAELERLDASSDDL--AALEEQLEELEAELEELEEELdelKGEIGRLEKE 721
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1220274030 1009 VDSLQEQLRQAQASTQT-EKPARSPSRHQLHAEAAQAARIERLTQELNSKSRSIQELTRTIERLQRE-RRTM 1078
Cdd:COG4913 722 LEQAEEELDELQDRLEAaEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEElERAM 793
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
538-1346 |
4.62e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.74 E-value: 4.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 538 EASSLQDKGPFQANKIASEAMTAHKGMQEKMDGGPEL-----ASLERLRLQLAKKEREL----SLREDQLQEQHKQeLTA 608
Cdd:pfam15921 96 ESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIrrresQSQEDLRNQLQNTVHELeaakCLKEDMLEDSNTQ-IEQ 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 609 LRQENYILQSKLHRA-------EEASNKRKWSFGEASDPVTEEKLKLIEKEMKEQETLIQGYHQENEKLYLQMKALQAQS 681
Cdd:pfam15921 175 LRKMMLSHEGVLQEIrsilvdfEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSES 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 682 KQNEEALFMENQRLLTEL---------------SFARDRMNTNNIQ-RTIRERSIVDQSFNIAELT------SQVQAAQK 739
Cdd:pfam15921 255 QNKIELLLQQHQDRIEQLiseheveitgltekaSSARSQANSIQSQlEIIQEQARNQNSMYMRQLSdlestvSQLRSELR 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 740 KEERLQEE-VRRLKQEKQALHVDLEMMRKERDlakvQAVCKSGDKGFEL-KLLHDKH-REEVTELKKRlqwyaKNQELLD 816
Cdd:pfam15921 335 EAKRMYEDkIEELEKQLVLANSELTEARTERD----QFSQESGNLDDQLqKLLADLHkREKELSLEKE-----QNKRLWD 405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 817 KDAA----------RLHAATAEIQKLTEQVEKLKAEVSRRANEQQRKAKEKAGEAKRIQDLERQLKQKEELLKRRhpnsl 886
Cdd:pfam15921 406 RDTGnsitidhlrrELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKV----- 480
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 887 palilaaastgaeedrldVRSLAQSSQTAALLERRVHRLEAELEGRDeaakRSLRAMEQQYHRIKLQYEQQISDLEQRLS 966
Cdd:pfam15921 481 ------------------VEELTAKKMTLESSERTVSDLTASLQEKE----RAIEATNAEITKLRSRVDLKLQELQHLKN 538
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 967 EkshsypaisseliKSHTQTLKAELEEVKevhqkqvsVLQAEVDSLQEQLRQaqastQTEKPARSPSRHQLHAEAAQAAR 1046
Cdd:pfam15921 539 E-------------GDHLRNVQTECEALK--------LQMAEKDKVIEILRQ-----QIENMTQLVGQHGRTAGAMQVEK 592
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1047 IErLTQELNSKSRSIQELTRTIERLQ---RERRTMLSGPSHERPN--NEPKRHLGTAKDTKKPSVETFPPTQDEKDYhpg 1121
Cdd:pfam15921 593 AQ-LEKEINDRRLELQEFKILKDKKDakiRELEARVSDLELEKVKlvNAGSERLRAVKDIKQERDQLLNEVKTSRNE--- 668
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1122 afSGTHISEVQLENDSLRTKLEELEVLREKEKVSLQAavthAQNQLlrieEQNAEQLTSVKAEHrkeiehllaRHALEHS 1201
Cdd:pfam15921 669 --LNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKS----AQSEL----EQTRNTLKSMEGSD---------GHAMKVA 729
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1202 SSRVAELTSQlntqeiivqhlQGQVKELQGTKEALavtklrEETLQNQlSKLLEELKEAKEAHSPELKHFTSLEQKIQSM 1281
Cdd:pfam15921 730 MGMQKQITAK-----------RGQIDALQSKIQFL------EEAMTNA-NKEKHFLKEEKNKLSQELSTVATEKNKMAGE 791
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1220274030 1282 EFRYSQREKQLQQVIADTRRVVEQ------EQQSEVERwrklaqgraKELEAFRMELDSILDVlRELQRQG 1346
Cdd:pfam15921 792 LEVLRSQERRLKEKVANMEVALDKaslqfaECQDIIQR---------QEQESVRLKLQHTLDV-KELQGPG 852
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
643-970 |
9.82e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 9.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 643 EEKLKLIEKEMKEQETLIQGYHQENEKLYLQMKALQAQSKQNE---EALFMENQRLLTELSFARDRMNTNNIQRTIRERS 719
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSrqiSALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 720 IVDQSFNIAELTSQVQAAQKKEERLQEEVRRLKQEKQALHVDLEMMRKERDLAKVQAvcksGDKGFELKLLHDKHREEVT 799
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA----ANLRERLESLERRIAATER 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 800 ELKKRLQWYAKNQELLDKDAARLHAATAEIQKLTEQVEKLKAEVSRRANEQQRKAKEKAGEAKRIQDLERQLKQKEELLK 879
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELE 918
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 880 RRhpnslpALILAAASTGAEEDRLDVRSLAQS-SQTAALLERRVHRLEAELEGRDEAAKRSLRAMEQQYHR---IKLQYE 955
Cdd:TIGR02168 919 EL------REKLAQLELRLEGLEVRIDNLQERlSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKElgpVNLAAI 992
|
330
....*....|....*
gi 1220274030 956 QQISDLEQRLSEKSH 970
Cdd:TIGR02168 993 EEYEELKERYDFLTA 1007
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
573-1182 |
1.11e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 1.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 573 ELASLERLRLQLAKKERELSLREDQLqEQHKQELTALRQENYILQSKLHRAEEASNKRKWSFGEasdpvTEEKLKLIEKE 652
Cdd:PRK03918 208 EINEISSELPELREELEKLEKEVKEL-EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEE-----LKKEIEELEEK 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 653 MKEQETLiqgyhQENEKLYLQMKALQAQSKQNEEALFMENQRLLTELsfardrmntNNIQRTIRERSivDQSFNIAELTS 732
Cdd:PRK03918 282 VKELKEL-----KEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEI---------NGIEERIKELE--EKEERLEELKK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 733 QVQAAQKKEERLQ------EEVRRLKQEKQALHVDLEMMRKERDLAKVQAVCKSGDkgfELKLLHDKHREEVTELKKRLQ 806
Cdd:PRK03918 346 KLKELEKRLEELEerhelyEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKE---EIEEEISKITARIGELKKEIK 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 807 WYAKNQELLDKDAARLHAATAEI--QKLTEQVEKLKAEVSRRANEQQRKAKEKAGEAKRIQDLERQLKQKEELLKRRhpn 884
Cdd:PRK03918 423 ELKKAIEELKKAKGKCPVCGRELteEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLK--- 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 885 SLPALILAAAStgaEEDRLDVRSLAQSSQTAALLERRVHRLEAELEGRDEAAKRslramEQQYHRIKLQYEQQISDLEQR 964
Cdd:PRK03918 500 ELAEQLKELEE---KLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK-----LEELKKKLAELEKKLDELEEE 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 965 LSEKSHsypaISSELIKSHTQTLKAELEEVKEVHQKQVSVLQAEVDSLQEQLRQAQASTQTEKparspSRHQLhaeAAQA 1044
Cdd:PRK03918 572 LAELLK----ELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDK-----AFEEL---AETE 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1045 ARIERLTQELNSKSRSI-QELTRTIERLQRERRTMLSGPSHERPNNEPKRhlgtakDTKKPSVETFPPTQDEkdyhpgaf 1123
Cdd:PRK03918 640 KRLEELRKELEELEKKYsEEEYEELREEYLELSRELAGLRAELEELEKRR------EEIKKTLEKLKEELEE-------- 705
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 1220274030 1124 sgthISEVQLENDSLRTKLEELEVLREKEKVSLQAAVTHAQNQLLRIEEQNAEQLTSVK 1182
Cdd:PRK03918 706 ----REKAKKELEKLEKALERVEELREKVKKYKALLKERALSKVGEIASEIFEELTEGK 760
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
574-1345 |
1.21e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 1.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 574 LASLERLRLQLAKKERELSLredqlQEQHKQELTALRQENYILQSKLHRAEEASNKRkwsfgeaSDPVTEEKLKLIEKEM 653
Cdd:TIGR02169 229 LKEKEALERQKEAIERQLAS-----LEEELEKLTEEISELEKRLEEIEQLLEELNKK-------IKDLGEEEQLRVKEKI 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 654 KEQETLIQGYHQENEKLYLQMKALQAQSKQNEEalfmENQRLLTELSFARDRMNTNNIQRTIRERSIVDQSFNIAELTSQ 733
Cdd:TIGR02169 297 GELEAEIASLERSIAEKERELEDAEERLAKLEA----EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAE 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 734 VQAAQKKEERLQEEVRRLKQEKQALHVDLEMMRKERDLAKVQAVCKSGDKGFelkllhdkHREEVTELKKRLqwyAKNQE 813
Cdd:TIGR02169 373 LEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELAD--------LNAAIAGIEAKI---NELEE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 814 LLDKDAARLHAATAEIQKLTEQVEKLKAEVSRRANEQQRKAKEkageakrIQDLERQLKQKEellKRRHPNSLPALILAA 893
Cdd:TIGR02169 442 EKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKE-------LSKLQRELAEAE---AQARASEERVRGGRA 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 894 ASTGAEEDRLDVrsLAQSSQTAALLERRVHRLEAELEGR--------DEAAKRS-------------------LRAMEQQ 946
Cdd:TIGR02169 512 VEEVLKASIQGV--HGTVAQLGSVGERYATAIEVAAGNRlnnvvvedDAVAKEAiellkrrkagratflplnkMRDERRD 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 947 YHRIKL-----------QYEQQISD-----------------------------LEQRLSEKSHSYP--AISSELIKSHT 984
Cdd:TIGR02169 590 LSILSEdgvigfavdlvEFDPKYEPafkyvfgdtlvvedieaarrlmgkyrmvtLEGELFEKSGAMTggSRAPRGGILFS 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 985 QTLKAELEEV---KEVHQKQVSVLQAEVDSLQEQLRQAQASTQTEKpaRSPSRHQLHAEAAQaARIERLTQELNSKSRSI 1061
Cdd:TIGR02169 670 RSEPAELQRLrerLEGLKRELSSLQSELRRIENRLDELSQELSDAS--RKIGEIEKEIEQLE-QEEEKLKERLEELEEDL 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1062 QELTRTIERLQRERRTMLSG-PSHERPNNEPKRHLGTAKDtkKPSVETFPPTQDEkdyhpgafsgthISEVQLENDSLRT 1140
Cdd:TIGR02169 747 SSLEQEIENVKSELKELEARiEELEEDLHKLEEALNDLEA--RLSHSRIPEIQAE------------LSKLEEEVSRIEA 812
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1141 KLEELEVL---REKEKVSLQAAVTHAQNQLLRIEEQnaeqltsvKAEHRKEIEHLLARhaLEHSSSRVAELTSQLNTQEI 1217
Cdd:TIGR02169 813 RLREIEQKlnrLTLEKEYLEKEIQELQEQRIDLKEQ--------IKSIEKEIENLNGK--KEELEEELEELEAALRDLES 882
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1218 IVQHLQGQVKELQGTKEALAVTKLREETLQNQLSKLLEELKEAKEAHSPELKHFTSL---EQKIQSMEFRYSQREKQLQQ 1294
Cdd:TIGR02169 883 RLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPkgeDEEIPEEELSLEDVQAELQR 962
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*..
gi 1220274030 1295 VIADTRRV------VEQEQQSEVERWRKLAQGRAKeLEAFRMELDSILDVLRELQRQ 1345
Cdd:TIGR02169 963 VEEEIRALepvnmlAIQEYEEVLKRLDELKEKRAK-LEEERKAILERIEEYEKKKRE 1018
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
573-1076 |
1.77e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 1.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 573 ELASLERLRLQLAKKERELSLREDQLQEQhKQELTALRQENYILQSKLHRAEEASNKR----KWSFGEASDPVTEEKLKL 648
Cdd:COG4717 72 ELKELEEELKEAEEKEEEYAELQEELEEL-EEELEELEAELEELREELEKLEKLLQLLplyqELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 649 IEKEMKEQETLIQgyhqeneklylQMKALQAQSKQNEEALfmenQRLLTELSFARdrmntnniqrtirERSIVDQSFNIA 728
Cdd:COG4717 151 LEERLEELRELEE-----------ELEELEAELAELQEEL----EELLEQLSLAT-------------EEELQDLAEELE 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 729 ELTSQVQAAQKKEERLQEEVRRLKQEKQALHVDLEMMRKERDLAKVQAVCKSGDKGFELkllhdkhreevtelkkrlqwy 808
Cdd:COG4717 203 ELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLAL--------------------- 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 809 aknqELLDKDAARLHAATAEIQKLTEQVEKLKAEVSRRANEQQRKAKEKAGEAKRIQDLERQlkQKEELLKRRHPNSLPA 888
Cdd:COG4717 262 ----LGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEE--ELEELLAALGLPPDLS 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 889 LILAAASTGAEEDRLDVRSLAQSSQTAALLERRVHRLEAELEGRDEAAKRSLRAMEQQYhRIKLQYEQQISDLEQRLSEK 968
Cdd:COG4717 336 PEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQA-EEYQELKEELEELEEQLEEL 414
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 969 shsYPAISSELIKSHTQTLKAELEEVKEvhqkQVSVLQAEVDSLQEQLRQAQASTQTEKPARSPSRhQLHAEAAQAARIE 1048
Cdd:COG4717 415 ---LGELEELLEALDEEELEEELEELEE----ELEELEEELEELREELAELEAELEQLEEDGELAE-LLQELEELKAELR 486
|
490 500
....*....|....*....|....*...
gi 1220274030 1049 RLTQELNSKSRSIQELTRTIERLQRERR 1076
Cdd:COG4717 487 ELAEEWAALKLALELLEEAREEYREERL 514
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
404-880 |
3.99e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 3.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 404 KFTQKSISEEIRRLMQEQDTSSQEpppLKPKKRQVPARSNASTSASSRKAPVPSVRVKKPESKPLHRVPAPSRAAQAAKP 483
Cdd:PTZ00121 1310 KAEEAKKADEAKKKAEEAKKKADA---AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 484 PS----PPTLRKAQNQTFKKTQNLNQTHTIKGLDTSLKLSSELVESVQSFAAFLQHQVEASSLQDKGpfqanKIASEAMT 559
Cdd:PTZ00121 1387 AEekkkADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKA-----EEAKKAEE 1461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 560 AHKGMQE--KMDGGPELASLERLRLQLAKKERELSLREDQLQ---EQHKQELTALRQENYILQSKLHRAEEASNKRKWSF 634
Cdd:PTZ00121 1462 AKKKAEEakKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKkaaEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 635 GEASDPVTEEKLKLIEKEMKEQETLIQGYHQENEKLYLQMKALQAqsKQNEEALFMENQRLLTElsfaRDRMNTNNIQRT 714
Cdd:PTZ00121 1542 AEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEA--KKAEEARIEEVMKLYEE----EKKMKAEEAKKA 1615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 715 IRERSIVDQSFNIAELTSQVQAAQKKEErlqEEVRRLKQekqalhvdlemMRKERDLAKVQAVCKSGDKGFELKLLHDKH 794
Cdd:PTZ00121 1616 EEAKIKAEELKKAEEEKKKVEQLKKKEA---EEKKKAEE-----------LKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 795 REEVTELKKRLQWYAKNQEllDKDAARLHAATAEIQKLTEQVEKLKAEVSRRANEQQRKAKEKA----------GEAKRI 864
Cdd:PTZ00121 1682 KAEEDEKKAAEALKKEAEE--AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKkkaeeakkdeEEKKKI 1759
|
490
....*....|....*.
gi 1220274030 865 QDLERQLKQKEELLKR 880
Cdd:PTZ00121 1760 AHLKKEEEKKAEEIRK 1775
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
742-1327 |
6.73e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 6.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 742 ERLQEEVRRLKqekqALHVDLEMMRKERD-LAKVQAVCKSgdkgfelkllHDKHREEVTE---LKKRLQWYAKNQELLDK 817
Cdd:COG4913 228 DALVEHFDDLE----RAHEALEDAREQIElLEPIRELAER----------YAAARERLAEleyLRAALRLWFAQRRLELL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 818 DAaRLHAATAEIQKLTEQVEKLKAEVsRRANEQQRKAKEKAGEA--KRIQDLERQLKQKEELLKRRhpnSLPALILAAAS 895
Cdd:COG4913 294 EA-ELEELRAELARLEAELERLEARL-DALREELDELEAQIRGNggDRLEQLEREIERLERELEER---ERRRARLEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 896 TGAE-EDRLDVRSLAQSSQTAALLERRVHRLEAELEGRDEAAKRSLRAMEQQYHRIklqyEQQISDLEQRLSekshSYPA 974
Cdd:COG4913 369 AALGlPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELREL----EAEIASLERRKS----NIPA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 975 isseliksHTQTLKAELEEVKEVHQKQVSVLqAE---VDSLQEQLRQAqastqtekparspsrhqlhaeaaqaarIERLt 1051
Cdd:COG4913 441 --------RLLALRDALAEALGLDEAELPFV-GElieVRPEEERWRGA---------------------------IERV- 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1052 qeLNSKSRSI-------QELTRTIERLQRERRTmlsgpsherpnnepkRHLGTAKDTKKPSVETFPPTQ--DEKDYHPGA 1122
Cdd:COG4913 484 --LGGFALTLlvppehyAAALRWVNRLHLRGRL---------------VYERVRTGLPDPERPRLDPDSlaGKLDFKPHP 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1123 FSGThiSEVQLENDSLRTKLEELEVLREKEKvslqaAVTHAQnqllrieeqnaeQLTSVKAEHRKEIEHLL--------- 1193
Cdd:COG4913 547 FRAW--LEAELGRRFDYVCVDSPEELRRHPR-----AITRAG------------QVKGNGTRHEKDDRRRIrsryvlgfd 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1194 ARHALEHSSSRVAELTSQLNTQEIIVQHLQGQVKELQGTKEALA-VTKLREE-----TLQNQLSKLLEELKEAKEAhSPE 1267
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQrLAEYSWDeidvaSAEREIAELEAELERLDAS-SDD 686
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1268 LKHftsLEQKIQSMEFRYSQREKQLQQVIADTRRVveQEQQSEVERWRKLAQGRAKELEA 1327
Cdd:COG4913 687 LAA---LEEQLEELEAELEELEEELDELKGEIGRL--EKELEQAEEELDELQDRLEAAED 741
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
727-1189 |
1.09e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 727 IAELTSQVQAAQKKEERLQEEVRRLKQEKQALHVDLEMMRKERDL--AKVQAVCKSGDkgfELKLLHDKHREEVTELKKR 804
Cdd:PRK02224 260 IEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLddADAEAVEARRE---ELEDRDEELRDRLEECRVA 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 805 LQWYAKNQELLDKDAARLHAATAEIQK----LTEQVEKLKAEVSRRANEQQRKAKEKAGEAKRIQDLERQLKQKEELLK- 879
Cdd:PRK02224 337 AQAHNEEAESLREDADDLEERAEELREeaaeLESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEe 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 880 --------RRHPNSLPALILAAASTGAEEDRL-----------------DVRSLAQSSQTAALLERRVHRLEAELEGRDE 934
Cdd:PRK02224 417 lreerdelREREAELEATLRTARERVEEAEALleagkcpecgqpvegspHVETIEEDRERVEELEAELEDLEEEVEEVEE 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 935 AAKR--SLRAMEQQYHRIklqyEQQISDLEQRLSEKSHSYPAISSELIKSHTQtlKAELEEVKEVHQKQVSVLQAEVDSL 1012
Cdd:PRK02224 497 RLERaeDLVEAEDRIERL----EERREDLEELIAERRETIEEKRERAEELRER--AAELEAEAEEKREAAAEAEEEAEEA 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1013 QEQLrqaqASTQTEKPARSPSRHQLHAEAAQAARIERLTQE---LNSKSRSIQEL-TRTIERLQ--RERRTMLSGPSHER 1086
Cdd:PRK02224 571 REEV----AELNSKLAELKERIESLERIRTLLAAIADAEDEierLREKREALAELnDERRERLAekRERKRELEAEFDEA 646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1087 PNNEPKRHLGTAKDTKKPSVETFPPTQDEKDyhpgafsgthisEVQLENDSLRTKLEELEVLREKEKvslqaavtHAQNQ 1166
Cdd:PRK02224 647 RIEEAREDKERAEEYLEQVEEKLDELREERD------------DLQAEIGAVENELEELEELRERRE--------ALENR 706
|
490 500
....*....|....*....|....*
gi 1220274030 1167 LLRIEE--QNAEQLTSVKAEHRKEI 1189
Cdd:PRK02224 707 VEALEAlyDEAEELESMYGDLRAEL 731
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
845-1072 |
1.23e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.63 E-value: 1.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 845 RRANEQQRKAKEKAGE--AKRIQDLERQLKQKEELL---KRRHPnslpaLILAAASTGAEEDRLD--VRSLAQSSQTAAL 917
Cdd:COG3206 163 EQNLELRREEARKALEflEEQLPELRKELEEAEAALeefRQKNG-----LVDLSEEAKLLLQQLSelESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 918 LERRVHRLEAELEGRDEAAKRSLRAMEQQYHRIKL-QYEQQISDLEQRLSEKSHSYPAISSElIKSHTQTLKAELEEVKE 996
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLaELEAELAELSARYTPNHPDVIALRAQ-IAALRAQLQQEAQRILA 316
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1220274030 997 VHQKQVSVLQAEVDSLQEQLRQAQAstqtekparspsrhQLHAEAAQAARIERLTQELNSKSRSIQELTRTIERLQ 1072
Cdd:COG3206 317 SLEAELEALQAREASLQAQLAQLEA--------------RLAELPELEAELRRLEREVEVARELYESLLQRLEEAR 378
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
643-1086 |
1.30e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.79 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 643 EEKLKLIEKEMKEQETLIQGYHQENEKLYLQMKALQAQSkqneEALFMENQRLLTELSFARDRMNTNNIQRTIRERSIVD 722
Cdd:pfam01576 193 EERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQI----AELRAQLAKKEEELQAALARLEEETAQKNNALKKIRE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 723 QSFNIAELTSQVQAAQKKEERLQEEVRRLKQEKQALHVDLEmmrkerdlakvqavcKSGDKGFELKLLHDKHREEVTELK 802
Cdd:pfam01576 269 LEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELE---------------DTLDTTAAQQELRSKREQEVTELK 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 803 KRLQWYAKNQELLDKDAARLHAATAEiqKLTEQVEKLKAEVSRRANEQQRKAKEKAGEAKRIQDLErQLKQKEELLKRRH 882
Cdd:pfam01576 334 KALEEETRSHEAQLQEMRQKHTQALE--ELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQ-QAKQDSEHKRKKL 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 883 PNSLPALILaaastgaeedrldvrSLAQSSQTAALLERRVHRLEAELEGrdeaAKRSLRAMEQQYHRIK---LQYEQQIS 959
Cdd:pfam01576 411 EGQLQELQA---------------RLSESERQRAELAEKLSKLQSELES----VSSLLNEAEGKNIKLSkdvSSLESQLQ 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 960 DLEQRLSEKSHSYPAISSELI-----KSHTQTLKAELEEVKEVHQKQVSVLQAEVDSLQEQLRQAQASTQTEKPARSPSR 1034
Cdd:pfam01576 472 DTQELLQEETRQKLNLSTRLRqledeRNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQ 551
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 1220274030 1035 HQLhaeaaqaariERLTQELNSKSRSIQELTRTIERLQRERRTMLSGPSHER 1086
Cdd:pfam01576 552 REL----------EALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQR 593
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
607-1021 |
1.30e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.95 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 607 TALRQENYILQSKLHRAEEASNKRKWsfgeasdpvTEEKLKLIE--KEMKE----QETLIQGYHQENEKLYLQMKALQAQ 680
Cdd:COG3096 276 HANERRELSERALELRRELFGARRQL---------AEEQYRLVEmaRELEElsarESDLEQDYQAASDHLNLVQTALRQQ 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 681 SKqneealfMENQRL-LTELSFARDrmntnniqrtirersivDQSFNIAELTSQVQAAQKKEERLQEEVRRLKQE----K 755
Cdd:COG3096 347 EK-------IERYQEdLEELTERLE-----------------EQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQladyQ 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 756 QALHVD----LEMMRKERDLAKVQAVCKSGD---KGFELKLL-HDKHREEVTELKKRLQwyaknQELLDKDAARlhaatA 827
Cdd:COG3096 403 QALDVQqtraIQYQQAVQALEKARALCGLPDltpENAEDYLAaFRAKEQQATEEVLELE-----QKLSVADAAR-----R 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 828 EIQKLTEQVEKLKAEVSR-----RANEQQRKAKEKAGEAKRIQDLERQLKQKEELLKRRHpnslpalilaAASTGAEEdr 902
Cdd:COG3096 473 QFEKAYELVCKIAGEVERsqawqTARELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQ----------NAERLLEE-- 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 903 lDVRSLAQSSQTAALLERRVHRLEAELEGRDEAAKRSL-RAMEQQYHRIklQYEQQISDLEQR-------------LSEK 968
Cdd:COG3096 541 -FCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVeQRSELRQQLE--QLRARIKELAARapawlaaqdalerLREQ 617
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1220274030 969 SHSYPAISSELIKSHTQTLKAELEEVKEVHQkqvsvLQAEVDSLQEQLRQAQA 1021
Cdd:COG3096 618 SGEALADSQEVTAAMQQLLEREREATVERDE-----LAARKQALESQIERLSQ 665
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
798-1074 |
3.23e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 3.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 798 VTELKKRLQWYAKNQELLDKDAARLHAATAEIQKlteQVEKLKAEVSR----RANEQQRKAKEKAGEAKRIQDLERQLKQ 873
Cdd:TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELER---QLKSLERQAEKaeryKELKAELRELELALLVLRLEELREELEE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 874 KEELLKRrhpNSLPALILAAASTGAEEDRLDVRS-LAQSSQTAALLERRVHRLEAELEgRDEAAKRSLRAMEQQYHRIKL 952
Cdd:TIGR02168 244 LQEELKE---AEEELEELTAELQELEEKLEELRLeVSELEEEIEELQKELYALANEIS-RLEQQKQILRERLANLERQLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 953 QYEQQISDLEQRLSEKSHSypaisselikshTQTLKAELEEVKEVHQKQVSVLQAEVDSLQEQLRQAQASTQTEKPARSP 1032
Cdd:TIGR02168 320 ELEAQLEELESKLDELAEE------------LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK 387
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1220274030 1033 SRHQLHAEAAQAARIERLTQELNSKSRSIQELTRTIERLQRE 1074
Cdd:TIGR02168 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
531-1064 |
3.41e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.68 E-value: 3.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 531 AFLQHQVEASSLQDKGPFQANKIASEAMTAHKGMQEKMDggpEL-ASLERLRLQLAKKERELSLREDQLQ--EQHKQELT 607
Cdd:pfam12128 266 GYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRD---ELnGELSAADAAVAKDRSELEALEDQHGafLDADIETA 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 608 ALRQENY-ILQSKLhraeEASNKRKWSFGEASDPVTEEKLKLIEKEMKEQETLIQGYHQENEKLY----LQMKALQAQSK 682
Cdd:pfam12128 343 AADQEQLpSWQSEL----ENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIReardRQLAVAEDDLQ 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 683 QNEEALFMENQRLLTELSFARDRMNTN-------NIQRTIRERSIVDQSFNIAELT---SQVQAAQKKEERLQEEVRRLK 752
Cdd:pfam12128 419 ALESELREQLEAGKLEFNEEEYRLKSRlgelklrLNQATATPELLLQLENFDERIErarEEQEAANAEVERLQSELRQAR 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 753 QEK-------QALHVDLEMMRKERDLAKVQAVCKSGD-----------------KGFELKLLH--DKHREEVTE------ 800
Cdd:pfam12128 499 KRRdqasealRQASRRLEERQSALDELELQLFPQAGTllhflrkeapdweqsigKVISPELLHrtDLDPEVWDGsvggel 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 801 ----LKKRLQ------WYAKNQEL---LDKDAARLHAATAEIQKLTEQ-------VEKLKAEVS-------------RRA 847
Cdd:pfam12128 579 nlygVKLDLKridvpeWAASEEELrerLDKAEEALQSAREKQAAAEEQlvqangeLEKASREETfartalknarldlRRL 658
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 848 NEQQRKAKEKAGEA---------KRIQDLERQLKQKEELLKrrhpnslpalilaAASTGAEEDRLDVRSLAQSSQTAALL 918
Cdd:pfam12128 659 FDEKQSEKDKKNKAlaerkdsanERLNSLEAQLKQLDKKHQ-------------AWLEEQKEQKREARTEKQAYWQVVEG 725
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 919 ERRVH--RLEAELEGRDEAAKRSLRAMEQQYHR----------IKLQYEQQISDLEQRLSEKSHSYPAISS------ELI 980
Cdd:pfam12128 726 ALDAQlaLLKAAIAARRSGAKAELKALETWYKRdlaslgvdpdVIAKLKREIRTLERKIERIAVRRQEVLRyfdwyqETW 805
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 981 KSHTQTLKAELEEVKEvhqkqvsvlqaEVDSLQEQLRQAQASTQTEkpaRSPSRHQLHAEAAQAARIERLTQELNSKSRS 1060
Cdd:pfam12128 806 LQRRPRLATQLSNIER-----------AISELQQQLARLIADTKLR---RAKLEMERKASEKQQVRLSENLRGLRCEMSK 871
|
....
gi 1220274030 1061 IQEL 1064
Cdd:pfam12128 872 LATL 875
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
918-1322 |
4.44e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 4.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 918 LERRVHRLEAElEGRDEAAKRSLRAMEQQYHRIKLQYEQQISDLEQRLSEKSHSYPAISSELIKSHTQTLKAELEEVKEv 997
Cdd:COG4717 76 LEEELKEAEEK-EEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEE- 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 998 HQKQVSVLQAEVDSLQEQLRQAQASTQTEKpaRSPSRHQLHAEAAQAARIERLTQELNSKSRSIQELTRTIERLQRERRT 1077
Cdd:COG4717 154 RLEELRELEEELEELEAELAELQEELEELL--EQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQ 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1078 MLSGPSHERPNNEPKRH------------LGTAKDTKKPSVETFPP---------------TQDEKDYHPGAFSGTHISE 1130
Cdd:COG4717 232 LENELEAAALEERLKEArlllliaaallaLLGLGGSLLSLILTIAGvlflvlgllallfllLAREKASLGKEAEELQALP 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1131 VQ--LENDSLRTKLEELEVLREKEKVSLQAAVTHAQNQLLRIEEQNAEQLTSVKAEHRKEIEHLLARHALEHSSS--RVA 1206
Cdd:COG4717 312 ALeeLEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEElrAAL 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1207 ELTSQLNTQEIIVQHLQGQVKELQGTKEALAvTKLREETLQNQLSKLLEELKEAKEAHSPELKHFTSLEQKIQSME--FR 1284
Cdd:COG4717 392 EQAEEYQELKEELEELEEQLEELLGELEELL-EALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEedGE 470
|
410 420 430
....*....|....*....|....*....|....*...
gi 1220274030 1285 YSQREKQLQQviadtrrvVEQEQQSEVERWRKLAQGRA 1322
Cdd:COG4717 471 LAELLQELEE--------LKAELRELAEEWAALKLALE 500
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
643-846 |
5.82e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 5.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 643 EEKLKLIEKEMKEQETLIQGYHQENEKLYLQMKALQAQSkqneEALfmenqRLLTELSFARDRMNT--NNIQRTIRERSI 720
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERR----EAL-----QRLAEYSWDEIDVASaeREIAELEAELER 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 721 VDQSFN-IAELTSQVQAAQKKEERLQEEVRRLKQEKQALHVDLEMMRKERDLAKVQAVCKSGDKGFELKLLHDKHREEVT 799
Cdd:COG4913 680 LDASSDdLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAAL 759
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1220274030 800 ELKKRlqwyaknQELLDKDAARLHAATAEIQKLTEQVEKLKAEVSRR 846
Cdd:COG4913 760 GDAVE-------RELRENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
534-1069 |
7.45e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.42 E-value: 7.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 534 QHQVEASSLQDKGPF---QANKIASE-AMTAHKGMQEKMDGGPELASLERLRLQLAKKERELS-LREDQLQEQHKQ---- 604
Cdd:pfam15921 275 EHEVEITGLTEKASSarsQANSIQSQlEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKrMYEDKIEELEKQlvla 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 605 --ELTALR-------QENYILQSKLHRA-------------EEASNKRKWSfGEASDPVTEEKLK--LIEKEMKEQ--ET 658
Cdd:pfam15921 355 nsELTEARterdqfsQESGNLDDQLQKLladlhkrekelslEKEQNKRLWD-RDTGNSITIDHLRreLDDRNMEVQrlEA 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 659 LIQGYHQENE-KLYLQMKALQAQSKQNEEAlfmenQRLLTELSFARDRMNTNNIQRTIRERSIVDQSFNIAELTSQVQAA 737
Cdd:pfam15921 434 LLKAMKSECQgQMERQMAAIQGKNESLEKV-----SSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEK 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 738 QKKEERLQEEVRRLKQEKQALHVDLEMMRKERD-LAKVQAVCKSgdkgfeLKLlhdkhreEVTELKKRLQWYAKNQELLD 816
Cdd:pfam15921 509 ERAIEATNAEITKLRSRVDLKLQELQHLKNEGDhLRNVQTECEA------LKL-------QMAEKDKVIEILRQQIENMT 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 817 KDAARLHAATAEIQKLTEQVEKlkaEVSRRANEQQRKAKEKAGEAKRIQDLERQLKQKEeLLKRRHPNSLPALILAAAST 896
Cdd:pfam15921 576 QLVGQHGRTAGAMQVEKAQLEK---EINDRRLELQEFKILKDKKDAKIRELEARVSDLE-LEKVKLVNAGSERLRAVKDI 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 897 GAEEDRLdvrslaqssqtaaLLERRVHRLEAELEGRD-EAAKRSLR----AMEQQYHRIKLQYEQQISDLEQRLSEKShs 971
Cdd:pfam15921 652 KQERDQL-------------LNEVKTSRNELNSLSEDyEVLKRNFRnkseEMETTTNKLKMQLKSAQSELEQTRNTLK-- 716
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 972 ypaiSSELIKSHTQTLKAELEEVKEVHQKQVSVLQAEVDSLQEQLRQAQASTQTEKPARSPSRHQLHAEAAQAARIERLT 1051
Cdd:pfam15921 717 ----SMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGEL 792
|
570
....*....|....*...
gi 1220274030 1052 QELNSKSRSIQELTRTIE 1069
Cdd:pfam15921 793 EVLRSQERRLKEKVANME 810
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
940-1342 |
1.76e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 940 LRAMEQQYHRIKLQYEQQisdleQRLSEKSHSYPAISSELIKSHTQTLKAELEEVkevhQKQVSVLQAEVDSLQEQLRQA 1019
Cdd:TIGR02168 195 LNELERQLKSLERQAEKA-----ERYKELKAELRELELALLVLRLEELREELEEL----QEELKEAEEELEELTAELQEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1020 QASTQTEKPARSPSRhqlhaeaaqaARIERLTQELNSKSRSIQELTRTIERLQRERrtmlsgpshERPNNEPKRHLGTAK 1099
Cdd:TIGR02168 266 EEKLEELRLEVSELE----------EEIEELQKELYALANEISRLEQQKQILRERL---------ANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1100 DTKKpsvetfpptqdekdyhpgafsgtHISEVQLENDSLRTKLEELEVLREKEKVSLQAAVTHAQNQLLRIEEQNA--EQ 1177
Cdd:TIGR02168 327 ELES-----------------------KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEqlET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1178 LTSVKAEHRKEIEHLlarhalehsSSRVAELTSQLNTQEIIVQHLQGQVKELQGTKEALAVTKLREETlqNQLSKLLEEL 1257
Cdd:TIGR02168 384 LRSKVAQLELQIASL---------NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAEL--EELEEELEEL 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1258 KEAKEAHSPELKHFTSLEQKIQSMEFRYSQREKQLQQVIADTRRVVEQEQQseverwrklAQGRAKELEAFRMELDSILD 1337
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG---------FSEGVKALLKNQSGLSGILG 523
|
....*
gi 1220274030 1338 VLREL 1342
Cdd:TIGR02168 524 VLSEL 528
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
573-1095 |
2.00e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.12 E-value: 2.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 573 ELASLERLRLQLAKKERELSLREDQLQEQHKQELTALRQENYIlqsklhraeEASNKRKWSFGEASDPVTEEKLKLieKE 652
Cdd:TIGR00618 315 ELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHI---------RDAHEVATSIREISCQQHTLTQHI--HT 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 653 MKEQETLIQGYHQENEKLYLQMKALQAQSKQNEEALFMENQRLLTELSFARDRMNTNNIQRTIRERSIVDQSFNIAELTS 732
Cdd:TIGR00618 384 LQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQE 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 733 QVQAAQKKEERLQEEVRRLKQEKQALHVDLEmmRKERDLAKVQAVCKSGDKGFELKLLHDKHREEVTELKKRLQWYAKNQ 812
Cdd:TIGR00618 464 SAQSLKEREQQLQTKEQIHLQETRKKAVVLA--RLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLE 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 813 ELLDKDAARLHAATAEIQKLTEQVEKLKAEVSRRANEQQRkAKEKAGEAKRIQDLERQLKQKEELLKRRHPNSLPALILA 892
Cdd:TIGR00618 542 TSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNR-SKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRK 620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 893 AAStgaEEDRLDVR-SLAQSSQTAALLERRVHRLEAEL-EGRDEAAKRSLRAMEQQYHRIKLQYEQQISDLEQRLSEKSH 970
Cdd:TIGR00618 621 LQP---EQDLQDVRlHLQQCSQELALKLTALHALQLTLtQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKE 697
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 971 SYPAISSEL--IKSHTQTLKAELEEVKEVHQKQVSVLQAEVDSLQEQLRQAQASTQTEKPARSpsrhQLHAEAAQAARIE 1048
Cdd:TIGR00618 698 MLAQCQTLLreLETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKART----EAHFNNNEEVTAA 773
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1220274030 1049 RLT-QELNSKSRSIQELTRTIERLQRERRTMLSGPSHERPNNEPKRHL 1095
Cdd:TIGR00618 774 LQTgAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNL 821
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
738-1345 |
2.02e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 2.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 738 QKKEERL--QEEVRRLKQEKQALHVDLEMMRKERDLAKVQAVCKSGDKGFELKLLHD----------------------K 793
Cdd:pfam02463 141 GGKIEIIamMKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLqelklkeqakkaleyyqlkeklE 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 794 HREEVTELKKRLQWYAKNQELLDKDAARLHAATAEIQKLTEQVEKLKAEVSRRANEQQRKAKEKAGEAKRIQDLERQLKQ 873
Cdd:pfam02463 221 LEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKS 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 874 KEELLKRRHPNSLPALILAAASTGAEEDRLDVRSLAQSSQTAALLERRVHRLEAELEGRDEAAKRSLRAMEQQYHRIKLQ 953
Cdd:pfam02463 301 ELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKK 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 954 YEQQISDLEQRLSEKSHSYPAISSELIKSHTQTLKAELEEVKEVHQKQ---VSVLQAEVDSLQEQLRQAQASTQTEKPAR 1030
Cdd:pfam02463 381 LESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEEleiLEEEEESIELKQGKLTEEKEELEKQELKL 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1031 SPSRHQLHAEAAQAARIERLTQElnsksrsiQELTRTIERLQRERRTMLSGPSHERPNNEPKRHLGtakdtkKPSVETFP 1110
Cdd:pfam02463 461 LKDELELKKSEDLLKETQLVKLQ--------EQLELLLSRQKLEERSQKESKARSGLKVLLALIKD------GVGGRIIS 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1111 PTQDEKDYHPGAFSGTHISEVQLENDSLRTKLEELEvLREKEKVSLQAAVTHAQNQLLRIEEQNAEQLTSVKAEHRKEIE 1190
Cdd:pfam02463 527 AHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEE-RQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNL 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1191 HLLARHALEHSSSRVAELTSQLNTQEIIVQHLQGQVKELQGT-------KEALAVTKLREETLQNQLSKLLEELKEAKEA 1263
Cdd:pfam02463 606 AQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGlrkgvslEEGLAEKSEVKASLSELTKELLEIQELQEKA 685
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1264 HSPELK-HFTSLEQKIQSMEFRYSQREKQL--QQVIADTRRVVEQEQQSEVERWRKLAQGRAKELEAFRMELDSILDVLR 1340
Cdd:pfam02463 686 ESELAKeEILRRQLEIKKKEQREKEELKKLklEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEE 765
|
....*
gi 1220274030 1341 ELQRQ 1345
Cdd:pfam02463 766 KSELS 770
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
573-1345 |
2.56e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.81 E-value: 2.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 573 ELASLERLRLQLAKKERELSLREDQLQEQHKQELTALrQENYILQSKLHRAEEASNKRKwsfgeasdpvteeklklIEKE 652
Cdd:TIGR00606 270 EIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDL-YHNHQRTVREKERELVDCQRE-----------------LEKL 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 653 MKEQETLIQGYHQ-ENEKLYLQMKALQAQSKQNEEALFMENQRLLTEL-SFARDRMNTNNIQR--TIRERSIVDQSFNIA 728
Cdd:TIGR00606 332 NKERRLLNQEKTElLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELdGFERGPFSERQIKNfhTLVIERQEDEAKTAA 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 729 ELTSQVQAaqkKEERLQEEVRRLKQEKQALHVDLEMMrkerdlakvqavcksgdkgfelKLLHDKHREEVTELKKRLQ-W 807
Cdd:TIGR00606 412 QLCADLQS---KERLKQEQADEIRDEKKGLGRTIELK----------------------KEILEKKQEELKFVIKELQqL 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 808 YAKNQELLDKDAArLHAATAEIQKLTEQ--VEKLKAEVSRRANEQQRKAKEKAGEAKRIQDLERQ---LKQKEELLKRRH 882
Cdd:TIGR00606 467 EGSSDRILELDQE-LRKAERELSKAEKNslTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHtttRTQMEMLTKDKM 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 883 PNSlpALILAAASTGAEEdrldVRSLAQSSQTAALLERRVHRLEAEL-EGRDEAAK--RSLRAMEQQYHRIKLQYEqqiS 959
Cdd:TIGR00606 546 DKD--EQIRKIKSRHSDE----LTSLLGYFPNKKQLEDWLHSKSKEInQTRDRLAKlnKELASLEQNKNHINNELE---S 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 960 DLEQRLSEKSHSYPAISSELIKSHTQTLKAELEEVKevhqKQVSVLQAEVDSLQEQLRQAQASTQTEKPArspSRHQLHA 1039
Cdd:TIGR00606 617 KEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSS----KQRAMLAGATAVYSQFITQLTDENQSCCPV---CQRVFQT 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1040 EAAQAARIERLTQELNSKSRSIQELTRTIERLQRERRTMLSgpSHERPNNEPKRHLGTAKDTKKPSVETFPPTQDEKdyh 1119
Cdd:TIGR00606 690 EAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLG--LAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLK--- 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1120 pgafsgTHISEVQLENDSLRTKLEELEVLREKEKVSLQAAVTHAQNQlLRIEEQNAE----QLTSVKAEHRKEIEHllAR 1195
Cdd:TIGR00606 765 ------NDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVE-RKIAQQAAKlqgsDLDRTVQQVNQEKQE--KQ 835
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1196 HALEHSSSRVAELTSQLNTQEIIVQHLQGQVKELQGTKEALAVTKLREETLQNQLSKLLEE-------LKEAKEAHSPEL 1268
Cdd:TIGR00606 836 HELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEvqslireIKDAKEQDSPLE 915
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1220274030 1269 KHFTSLEQKIQSMEFRYSQREKQLQQVIADTRRVVEQEQQSEVERWRKLAQGRAKELEAFRMELDSILDVLRELQRQ 1345
Cdd:TIGR00606 916 TFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKH 992
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
645-1018 |
2.63e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 2.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 645 KLKLIEKEMKEQETLIQGYHQENEKLYLQMKALQAQSKQNEEALFMENQRLLTELSFARDRMNTNNIQRTIRERSIVDQS 724
Cdd:TIGR04523 311 ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLE 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 725 FNIAELTSQVQAAQKKEERLQEEVRRLKQEKQALHVDLEMMRKERDLAKvQAVCKSGDKGFELKLLHDKHREEVTELKKR 804
Cdd:TIGR04523 391 SQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNN-SEIKDLTNQDSVKELIIKNLDNTRESLETQ 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 805 LQWYA-----------KNQELLDKDAARLHAATAEIQKLTEQVEKLKAEVSRRANEQQRKAKEKAGEAKRIQDLERQLKQ 873
Cdd:TIGR04523 470 LKVLSrsinkikqnleQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNK 549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 874 KEELLKRrhpnslpalilaaastgaeedrldvrslaqssqtaALLERRVHRLEAELEGRDEAAKRSLRAMEQQYHRIKlQ 953
Cdd:TIGR04523 550 DDFELKK-----------------------------------ENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELID-Q 593
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1220274030 954 YEQQISDLEQRLSEKSHSypaisselikshTQTLKAELEEVKEVHQKQVSV---LQAEVDSLQEQLRQ 1018
Cdd:TIGR04523 594 KEKEKKDLIKEIEEKEKK------------ISSLEKELEKAKKENEKLSSIiknIKSKKNKLKQEVKQ 649
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
644-1323 |
3.13e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 3.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 644 EKLKLIEKEMKEQETLIQGYHQENEKLYLQMKALQAQSKQNEE-----ALFMENQRLLTELSFARDRMNtnniqrtiRER 718
Cdd:TIGR00618 219 ERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLlkqlrARIEELRAQEAVLEETQERIN--------RAR 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 719 SIVDQSFNIAELTSQVQAAQKKEERLQEEVRRLKQEKQ----ALHVDLEMMRKERDLAKVQAVCKSGDKGFELKLLHDKH 794
Cdd:TIGR00618 291 KAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMkraaHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREI 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 795 REEVTELKKRLQwyaKNQELLDKDAARLHAATAEIQKLTEQVEKLKAEVSRRANEQQRKAKEKAgeakriqdlERQLKQK 874
Cdd:TIGR00618 371 SCQQHTLTQHIH---TLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKK---------QQELQQR 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 875 EELLKRrhpnslpalilAAASTGAEEDRLDVRSLAQSSQtaallerrvhRLEAELEgrDEAAKRSLRAMEQQYHRIKLQY 954
Cdd:TIGR00618 439 YAELCA-----------AAITCTAQCEKLEKIHLQESAQ----------SLKEREQ--QLQTKEQIHLQETRKKAVVLAR 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 955 EQQISDLEQRLSEK-SHSYPAISSELIKSHTQTLKAELEEVKEVHQKQVSVLQAEVDSLQEQLRQAQASTQTEKparsps 1033
Cdd:TIGR00618 496 LLELQEEPCPLCGScIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQ------ 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1034 rhqlHAEAAQAARIERLTQELNSKSRSIQELTRTIERLQRERRTMLSGPSHERPNNEPKRHlgtakdtkkpsvetfpptq 1113
Cdd:TIGR00618 570 ----QSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQD------------------- 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1114 dekDYHPGAFSGTHISEVQLENDSLRTKLEELEvlreKEKVSLQAAVTHAQNQLLRIEEQNAEQltsvKAEHRKEiehll 1193
Cdd:TIGR00618 627 ---LQDVRLHLQQCSQELALKLTALHALQLTLT----QERVREHALSIRVLPKELLASRQLALQ----KMQSEKE----- 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1194 arhALEHSSSRVAELTSQLNTQEIIVQHLQGQVKELQGTKEAlavtklREETLQNQLSKLLEELKEAKEAHSPELKHFTS 1273
Cdd:TIGR00618 691 ---QLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSS------LGSDLAAREDALNQSLKELMHQARTVLKARTE 761
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1274 LEQKIQSMEFRYSQREKQLQQVIADTRRVVEQEQQSEVERWRKLAQGRAK 1323
Cdd:TIGR00618 762 AHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQE 811
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
792-1077 |
3.49e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 45.29 E-value: 3.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 792 DKHREEVTELKKRLQwyaknqelldkdaarlhAATAEIQKLTEQVEKLKAEVSRRANEQQRKAKekageakrIQDLERQL 871
Cdd:PRK11281 76 DRQKEETEQLKQQLA-----------------QAPAKLRQAQAELEALKDDNDEETRETLSTLS--------LRQLESRL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 872 KQKEELLKRRHP-----NSLpaliLAAASTGAEEdrldvrslAQSSQTAALleRRVHRLEAELEGrDEAAKRSLRAMEQQ 946
Cdd:PRK11281 131 AQTLDQLQNAQNdlaeyNSQ----LVSLQTQPER--------AQAALYANS--QRLQQIRNLLKG-GKVGGKALRPSQRV 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 947 yhriKLQYEQQISDLEQRLSEKShsyPAISSELikshTQTLKAELEEVKE---VHQKQVSVLQAEVDS-----LQEQLRQ 1018
Cdd:PRK11281 196 ----LLQAEQALLNAQNDLQRKS---LEGNTQL----QDLLQKQRDYLTAriqRLEHQLQLLQEAINSkrltlSEKTVQE 264
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1220274030 1019 AQASTQTEKPARSPsrhQLHAEAAQAARI-ERL---TQELNSKSRSIQELTRTIERLQRERRT 1077
Cdd:PRK11281 265 AQSQDEAARIQANP---LVAQELEINLQLsQRLlkaTEKLNTLTQQNLRVKNWLDRLTQSERN 324
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
724-995 |
4.17e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 44.89 E-value: 4.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 724 SFNIAELTSQVQAAQKK-----EERLQ--EEVRRLKQEKQALHVDLEMMrkERDLAKVQAVCKSGDKG-FELKLLHDKHR 795
Cdd:PLN02939 127 DFQLEDLVGMIQNAEKNilllnQARLQalEDLEKILTEKEALQGKINIL--EMRLSETDARIKLAAQEkIHVEILEEQLE 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 796 EEVTELKKRLQWYAKNQELLDKDaarLHAATAEIQKLTEQVEKLKAEVSRRANEQQRKA---KEKAGEAKRIQDLERQLK 872
Cdd:PLN02939 205 KLRNELLIRGATEGLCVHSLSKE---LDVLKEENMLLKDDIQFLKAELIEVAETEERVFkleKERSLLDASLRELESKFI 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 873 QKEELLKRRHPNSLPALIlaaASTGAEEDRLDvRSLAQSSQTAALLER------RVHRLEAELEgRDEAAKRSLRAMEQQ 946
Cdd:PLN02939 282 VAQEDVSKLSPLQYDCWW---EKVENLQDLLD-RATNQVEKAALVLDQnqdlrdKVDKLEASLK-EANVSKFSSYKVELL 356
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1220274030 947 YHRIKLQYEQQisdleQRLSEKSHSYPAISSELIKSHTQTLKAELEEVK 995
Cdd:PLN02939 357 QQKLKLLEERL-----QASDHEIHSYIQLYQESIKEFQDTLSKLKEESK 400
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
644-1343 |
4.28e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 4.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 644 EKLKLIEKEMKEQETLIqgyhqenEKLYLQMKALQAQSKQNEEALFMENQRLLTELSFARDRMNTNNIQRTIRERSIVDQ 723
Cdd:TIGR02169 177 EELEEVEENIERLDLII-------DEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 724 SFNIAELTSQVQAAQKKEERLQEEVRRLKQEKQALHVDlEMMRKERDLAKVQAvcksgdkgfELKLLHDKHREEVTELKK 803
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE-EQLRVKEKIGELEA---------EIASLERSIAEKERELED 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 804 RLQWYAKNQELLDKDAARLHAATAEIQKLTEQVEKLKAEVSRRA---NEQQRKAKEKAGEAKRIQDLERQLKQKEELLKR 880
Cdd:TIGR02169 320 AEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKeelEDLRAELEEVDKEFAETRDELKDYREKLEKLKR 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 881 RHPNSLPALI-LAAASTGAEEDRLDVRS-LAQSSQTAALLERRVHRLEAEL---EGRDEAAKRSLRAMEQQYHRIKLQY- 954
Cdd:TIGR02169 400 EINELKRELDrLQEELQRLSEELADLNAaIAGIEAKINELEEEKEDKALEIkkqEWKLEQLAADLSKYEQELYDLKEEYd 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 955 --EQQISDLEQRLSEKSHSYPAISSELIKSHTQT------------LKAELEEVKEVHQKQVSV-----LQAEV---DSL 1012
Cdd:TIGR02169 480 rvEKELSKLQRELAEAEAQARASEERVRGGRAVEevlkasiqgvhgTVAQLGSVGERYATAIEVaagnrLNNVVvedDAV 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1013 QEQ----LRQAQASTQT------EKPARSPSRHQLHA---------------------------------EAAQA----A 1045
Cdd:TIGR02169 560 AKEaielLKRRKAGRATflplnkMRDERRDLSILSEDgvigfavdlvefdpkyepafkyvfgdtlvvediEAARRlmgkY 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1046 RIERLTQELNSKSRSI---------------------QELTRTIERLQRERRTMLSGPSHERpnNEPKRHLGTAKDTKKP 1104
Cdd:TIGR02169 640 RMVTLEGELFEKSGAMtggsraprggilfsrsepaelQRLRERLEGLKRELSSLQSELRRIE--NRLDELSQELSDASRK 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1105 SVETFPPTQDEKDYHPG-----AFSGTHISEVQLENDSLRTKLEELEvlreKEKVSLQAAVTHAQNQLLRIEEQNAEQLT 1179
Cdd:TIGR02169 718 IGEIEKEIEQLEQEEEKlkerlEELEEDLSSLEQEIENVKSELKELE----ARIEELEEDLHKLEEALNDLEARLSHSRI 793
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1180 SVKAEHRKEIEHLLARhalehSSSRVAELTSQLNTQEIIVQHLQGQVKELQG----TKEALAVTKLREETLQNQLSKLLE 1255
Cdd:TIGR02169 794 PEIQAELSKLEEEVSR-----IEARLREIEQKLNRLTLEKEYLEKEIQELQEqridLKEQIKSIEKEIENLNGKKEELEE 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1256 ELKEAKEAHSPELKHFTSLEQKIQSMEFRYSQREKQlqqviadtrrvvEQEQQSEVERWRKLAQGRAKELEAFRMELDSI 1335
Cdd:TIGR02169 869 ELEELEAALRDLESRLGDLKKERDELEAQLRELERK------------IEELEAQIEKKRKRLSELKAKLEALEEELSEI 936
|
....*...
gi 1220274030 1336 LDVLRELQ 1343
Cdd:TIGR02169 937 EDPKGEDE 944
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
827-1078 |
4.60e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.94 E-value: 4.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 827 AEIQKLTEQVEKLKAEVSR-RANEQQrkAKEKAGEAKRIQDLERQLKQKEELLKrrhPNSLPALI--LAAASTGAEEDRl 903
Cdd:COG3096 836 AELAALRQRRSELERELAQhRAQEQQ--LRQQLDQLKEQLQLLNKLLPQANLLA---DETLADRLeeLREELDAAQEAQ- 909
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 904 dvRSLAQSSQTAALLERRVHRLEAELEGRDEAAKRSLRAMEQQYhriklQYEQQISDLEQRLSEKSH-SYPAISSELIKS 982
Cdd:COG3096 910 --AFIQQHGKALAQLEPLVAVLQSDPEQFEQLQADYLQAKEQQR-----RLKQQIFALSEVVQRRPHfSYEDAVGLLGEN 982
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 983 H--TQTLKAELEEVkevhQKQVSVLQAEVDSLQEQLRQAQASTQTEKPARSPSRHQLH--------------AEAAQAAR 1046
Cdd:COG3096 983 SdlNEKLRARLEQA----EEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQeleqeleelgvqadAEAEERAR 1058
|
250 260 270
....*....|....*....|....*....|....
gi 1220274030 1047 IER--LTQELNSKSRSIQELTRTIERLQRERRTM 1078
Cdd:COG3096 1059 IRRdeLHEELSQNRSRRSQLEKQLTRCEAEMDSL 1092
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
944-1344 |
4.95e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 4.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 944 EQQYHRIKLQYEQQISDLEQRLSEKShsypaisselikshtqtlkaeleevkEVHQKQVSVLQAEVDSLQEQLRQAQAST 1023
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESN--------------------------ELHEKQKFYLRQSVIDLQTKLQEMQMER 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1024 QTEKPARspsRHQLHAEAAQAARIERLTQELNSkSRSIQE--LTRTIERLQRERRTMLSgpsherpnnepkrHLGTAKDT 1101
Cdd:pfam15921 127 DAMADIR---RRESQSQEDLRNQLQNTVHELEA-AKCLKEdmLEDSNTQIEQLRKMMLS-------------HEGVLQEI 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1102 KKPSVEtFPPTQDEKDYHPGAFSGTHISEVqleNDSLRTKLEELEVlrekEKVSLQAAVTHAQNQLLRIEEQNAEQLTSV 1181
Cdd:pfam15921 190 RSILVD-FEEASGKKIYEHDSMSTMHFRSL---GSAISKILRELDT----EISYLKGRIFPVEDQLEALKSESQNKIELL 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1182 KAEHRKEIEHLLARHALEHSSsrVAELTSQLNTQEIIVQHLQGQVKELQGTKEALAVTKLREetLQNQLSKLLEELKEAK 1261
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEITG--LTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSD--LESTVSQLRSELREAK 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1262 EAHSPELKHF-------TSLEQKIQSMEFRYSQR----EKQLQQVIADTRRvVEQEQQSEVERWRKL---AQGRAKELEA 1327
Cdd:pfam15921 338 RMYEDKIEELekqlvlaNSELTEARTERDQFSQEsgnlDDQLQKLLADLHK-REKELSLEKEQNKRLwdrDTGNSITIDH 416
|
410
....*....|....*..
gi 1220274030 1328 FRMELDsilDVLRELQR 1344
Cdd:pfam15921 417 LRRELD---DRNMEVQR 430
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
737-873 |
5.34e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 5.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 737 AQKKEERLQEEVRRLKQEKQalhvdlemmrKERDLAKVQAVCKSGDKGFELKLLHDKH----REEVTELKKRLQ----WY 808
Cdd:PRK12704 29 AEAKIKEAEEEAKRILEEAK----------KEAEAIKKEALLEAKEEIHKLRNEFEKElrerRNELQKLEKRLLqkeeNL 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1220274030 809 AKNQELLDKDAARLHAATAEIQKLTEQVEKLKAEVSRRANEQQRKAKEKAG----EAKRI--QDLERQLKQ 873
Cdd:PRK12704 99 DRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGltaeEAKEIllEKVEEEARH 169
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
713-1313 |
1.11e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.49 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 713 RTIRERSIVDQSFNIAELTSQVqaAQKKEERLQEEVRRLKQEKQALHVDLEMMRKERDLAKVQAvcksgDKGFELKLLHD 792
Cdd:PRK02224 175 RLGVERVLSDQRGSLDQLKAQI--EEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETR-----DEADEVLEEHE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 793 KHREEVTELKKRLqwyAKNQELLDKDAARLHAATAEIQKLTEQVEKLKAEVSRRANEQQRKAKEKAGEAKRIQDLErqlK 872
Cdd:PRK02224 248 ERREELETLEAEI---EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELE---D 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 873 QKEELLKRRHPNSLPALILAAASTGAEEDRLDVRSLAQSSQTAAllerrvhrleAELEGRDEAAKRSLRameqqyhrikl 952
Cdd:PRK02224 322 RDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEA----------AELESELEEAREAVE----------- 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 953 QYEQQISDLEQRLSEKSHSYPAISSELIKShtQTLKAELEEVKEVHQKQVSVLQAEVDSLQEQLRQAQ------------ 1020
Cdd:PRK02224 381 DRREEIEELEEEIEELRERFGDAPVDLGNA--EDFLEELREERDELREREAELEATLRTARERVEEAEalleagkcpecg 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1021 --------ASTQTEKPARspsRHQLHAEAAQA-ARIERLTQELNSkSRSIQELTRTIERLQRERRTMLSGPSHERPNNEP 1091
Cdd:PRK02224 459 qpvegsphVETIEEDRER---VEELEAELEDLeEEVEEVEERLER-AEDLVEAEDRIERLEERREDLEELIAERRETIEE 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1092 KRHLGTAKDTKKPSVETFPPTQDEKDYHPGAFSGTHISEVQLENDSLRTKLEELEVLREKEkvSLQAAVTHAQNQLLRIE 1171
Cdd:PRK02224 535 KRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIR--TLLAAIADAEDEIERLR 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1172 EQNaEQLTSVKAEHRKEIEHLLARH---ALEHSSSRVAELTSQLNTQEIIVQHLQGQVKELQGtkealavtklREETLQN 1248
Cdd:PRK02224 613 EKR-EALAELNDERRERLAEKRERKrelEAEFDEARIEEAREDKERAEEYLEQVEEKLDELRE----------ERDDLQA 681
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1220274030 1249 QLSKL---LEELKEAKEAHspelkhfTSLEQKIQSMEFRYSQREkQLQQVIADTRRVVEQEQQSEVER 1313
Cdd:PRK02224 682 EIGAVeneLEELEELRERR-------EALENRVEALEALYDEAE-ELESMYGDLRAELRQRNVETLER 741
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
820-1078 |
1.12e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 820 ARLHAATAEIQKLTEQVEKLKAEVSRRANEQQRKAKEKAgEAKRIQDLerqLKQKEELLKRRHPNSLPALILAAASTGAE 899
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRERE-KAERYQAL---LKEKREYEGYELLKEKEALERQKEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 900 EDRLDvRSLAQSSQTAALLERRVHRLEAELEgrdEAAKRSLRAMEQQYHRIKL----------QYEQQISDLEQRLSEKS 969
Cdd:TIGR02169 246 LASLE-EELEKLTEEISELEKRLEEIEQLLE---ELNKKIKDLGEEEQLRVKEkigeleaeiaSLERSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 970 HSYPAISSELIKshTQTLKAELEEVKEVHQKQVSVLQAEVDSLQEQLRQAQASTQTEKPARSPSRHQLhaeAAQAARIER 1049
Cdd:TIGR02169 322 ERLAKLEAEIDK--LLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL---KDYREKLEK 396
|
250 260
....*....|....*....|....*....
gi 1220274030 1050 LTQELNSKSRSIQELTRTIERLQRERRTM 1078
Cdd:TIGR02169 397 LKREINELKRELDRLQEELQRLSEELADL 425
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
590-965 |
1.45e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.17 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 590 ELSLREDQLQEQHKQELTALRQENYILQSKLHRAEEASNKRKWSFGEASDPVTEEKLKLIEKEM----------KEQET- 658
Cdd:pfam05483 363 ELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQfekiaeelkgKEQELi 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 659 -LIQGYHQENEKLYLQMKAL----QAQSKQNEE-ALFMENQRLL-TELSFARDRMNTNNiQRTIRERSivDQSFNIAELT 731
Cdd:pfam05483 443 fLLQAREKEIHDLEIQLTAIktseEHYLKEVEDlKTELEKEKLKnIELTAHCDKLLLEN-KELTQEAS--DMTLELKKHQ 519
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 732 SQVQAAQKKEERLQEEVRRLKQEKQALHVDLEMMRKERDLAKVQAVCK-----SGDKGFELKLLHDKHREEVTE-----L 801
Cdd:pfam05483 520 EDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKldkseENARSIEYEVLKKEKQMKILEnkcnnL 599
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 802 KKRLQWYAKN-QELLDKDAARLHAATAEIQKLTE---QVEKLKAEVSrraneqqrKAKEKAGEAKriqdlerQLKQKEEL 877
Cdd:pfam05483 600 KKQIENKNKNiEELHQENKALKKKGSAENKQLNAyeiKVNKLELELA--------SAKQKFEEII-------DNYQKEIE 664
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 878 LKRRHPNSLPALILAAASTGAE----EDRLDVRSLAQSSQTAALLERRVHRLEAELEGRDEAAKRsLRAMEQQYHRIKLQ 953
Cdd:pfam05483 665 DKKISEEKLLEEVEKAKAIADEavklQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGL-YKNKEQEQSSAKAA 743
|
410
....*....|..
gi 1220274030 954 YEQQISDLEQRL 965
Cdd:pfam05483 744 LEIELSNIKAEL 755
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1142-1339 |
1.47e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1142 LEELEVLREKEKVSLQAAVTHAQNQL-LRIEEQNAEQLTSVKAEHRKEIEHLLARHALEHSSSRVAELTSQLNTQEIIVQ 1220
Cdd:COG4717 70 LKELKELEEELKEAEEKEEEYAELQEeLEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1221 HLQGQVKELQGTKEALAVTKLREETLQNQLSKLLEELKEAKEahspelKHFTSLEQKIQSMEFRYSQREKQLQQVIADTR 1300
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATE------EELQDLAEELEELQQRLAELEEELEEAQEELE 223
|
170 180 190
....*....|....*....|....*....|....*....
gi 1220274030 1301 RVVEQEQQSEVERWRKLAQGRAKELEAFRMELDSILDVL 1339
Cdd:COG4717 224 ELEEELEQLENELEAAALEERLKEARLLLLIAAALLALL 262
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
578-870 |
2.14e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 2.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 578 ERLRLQLAKKERELSlREDQLQEQHKQELTALRQENYILQSK----LHRAEEASNKRKWSFGEASDPVTEEKLKLIEKEM 653
Cdd:pfam17380 299 ERLRQEKEEKAREVE-RRRKLEEAEKARQAEMDRQAAIYAEQermaMERERELERIRQEERKRELERIRQEEIAMEISRM 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 654 KEQETLIQGYHQENEKLYLQMKALQAQSKQNEEAlfmenqrlltelsfardrmntnniQRTIRERSIVDQSFNIAELTSQ 733
Cdd:pfam17380 378 RELERLQMERQQKNERVRQELEAARKVKILEEER------------------------QRKIQQQKVEMEQIRAEQEEAR 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 734 VQAAQKKEERLQEEVRRLKQEKQALHVDLEMMRKERDLAKVQAVCKSGDKGfELKLLHDKHR----EEVTELKKRLQWYA 809
Cdd:pfam17380 434 QREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKR-DRKRAEEQRRkileKELEERKQAMIEEE 512
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1220274030 810 KNQELLDKDAARLHAATAEIQKLTEQVEKLKAEVS----RRANEQQRKAKEkagEAKRIQDLERQ 870
Cdd:pfam17380 513 RKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEmeerRRIQEQMRKATE---ERSRLEAMERE 574
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1128-1306 |
2.43e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 2.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1128 ISEVQLENDSLRTKLEELEvlreKEKVSLQAAVTHAQNQLLRIEEQNAEQL-TSVKAEHRKEIEHLLARHALEHSSSRVA 1206
Cdd:COG4942 64 IAALARRIRALEQELAALE----AELAELEKEIAELRAELEAQKEELAELLrALYRLGRQPPLALLLSPEDFLDAVRRLQ 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1207 ELTSQLNTQEIIVQHLQGQVKELQGTKEALAVTKLREETLQNQLSKLLEELKEAKEAHSPELKHFTSLEQKIQSMEFRYS 1286
Cdd:COG4942 140 YLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ 219
|
170 180
....*....|....*....|
gi 1220274030 1287 QREKQLQQVIADTRRVVEQE 1306
Cdd:COG4942 220 QEAEELEALIARLEAEAAAA 239
|
|
| PTZ00449 |
PTZ00449 |
104 kDa microneme/rhoptry antigen; Provisional |
428-517 |
2.47e-03 |
|
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 42.37 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 428 PPPLKPKKRQVPARSNASTSASSRKAPVPSVRVKKPESKPLHRVPAPSRAAQAAKPPSPPTLR-KAQNQTFKKTQNLNQT 506
Cdd:PTZ00449 610 KSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKeKFYDDYLDAAAKSKET 689
|
90
....*....|.
gi 1220274030 507 HTIKGLDTSLK 517
Cdd:PTZ00449 690 KTTVVLDESFE 700
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
560-1024 |
2.59e-03 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 42.48 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 560 AHKGMQEKMDGGPELAslerlRLQLAKKERELSLREDQLQE---------QHKQELTALRQENYILQSKL-HRAEEASNK 629
Cdd:PRK10246 266 LQQALAAEEKAQPQLA-----ALSLAQPARQLRPHWERIQEqsaalahtrQQIEEVNTRLQSTMALRARIrHHAAKQSAE 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 630 RKWSFGEASDPVTE-EKLKLIEKEMKEQETLIQgyHQENEKLYLQMKALQAQSKQNEEALFMENQRLLT--ELSFARDRM 706
Cdd:PRK10246 341 LQAQQQSLNTWLAEhDRFRQWNNELAGWRAQFS--QQTSDREQLRQWQQQLTHAEQKLNALPAITLTLTadEVAAALAQH 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 707 NTnniQRTIRERsivdqsfnIAELTSQVQAAQKKEERLQEEVRRLKQEKQALHVDLEMMR-----KERDLAKVQAVCKSg 781
Cdd:PRK10246 419 AE---QRPLRQR--------LVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRqrykeKTQQLADVKTICEQ- 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 782 dkgfelkllhDKHREEVTELKKRLQ--------------WYAKNQEL-LDKDAARLHAATAEIQKLTE-------QVEKL 839
Cdd:PRK10246 487 ----------EARIKDLEAQRAQLQagqpcplcgstshpAVEAYQALePGVNQSRLDALEKEVKKLGEegaalrgQLDAL 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 840 KAEVSRRANEQQRKAKEKAGEAKRIQ----DLERQLKQKEELL-----KRRHPNSLPALI--LAAASTGAEEDRLDVRSL 908
Cdd:PRK10246 557 TKQLQRDESEAQSLRQEEQALTQQWQavcaSLNITLQPQDDIQpwldaQEEHERQLRLLSqrHELQGQIAAHNQQIIQYQ 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 909 AQSSQTAALLERRVHRLEAEL-EGRDEAAKRSLRAMEQQyhriklQYEQQISDLeQRLSEKSHSYPAISSELIKSHTQTL 987
Cdd:PRK10246 637 QQIEQRQQQLLTALAGYALTLpQEDEEASWLATRQQEAQ------SWQQRQNEL-TALQNRIQQLTPLLETLPQSDDLPH 709
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 1220274030 988 KAE---LEEVKEVHQKQVSvLQAEVDSLQEQLRQAQASTQ 1024
Cdd:PRK10246 710 SEEtvaLDNWRQVHEQCLS-LHSQLQTLQQQDVLEAQRLQ 748
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
643-1062 |
2.67e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 643 EEKLKLIEKEMKEQETLIQGYHQENEKLYLQMKALQAQSKQNEEA---LFMENQRLLTELSFARDRMNTNNIQRT--IRE 717
Cdd:pfam01576 74 EEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAArqkLQLEKVTTEAKIKKLEEDILLLEDQNSklSKE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 718 RSIVDQsfNIAELTSQVQAAQKKEERLQeevrRLKQEKQALHVDLEMMRKErdlakvqavcksgdkgfelkllHDKHREE 797
Cdd:pfam01576 154 RKLLEE--RISEFTSNLAEEEEKAKSLS----KLKNKHEAMISDLEERLKK----------------------EEKGRQE 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 798 VTELKKRlqwyaknqelLDKDAARLHAATAEIQkltEQVEKLKAEVSRRANEQQ-------RKAKEKAGEAKRIQDLERQ 870
Cdd:pfam01576 206 LEKAKRK----------LEGESTDLQEQIAELQ---AQIAELRAQLAKKEEELQaalarleEETAQKNNALKKIRELEAQ 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 871 LKQKEELLKRRHpnslpalilaAASTGAEEDRLDvrslaqssqtaalLERRVHRLEAELEGR--DEAAKRSLRAmeqqyh 948
Cdd:pfam01576 273 ISELQEDLESER----------AARNKAEKQRRD-------------LGEELEALKTELEDTldTTAAQQELRS------ 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 949 riklQYEQQISDLEQRLSEKSHSYPAISSELIKSHTQ---TLKAELEEVKEVHQ---KQVSVLQAEVDSLQEQLRQAQAS 1022
Cdd:pfam01576 324 ----KREQEVTELKKALEEETRSHEAQLQEMRQKHTQaleELTEQLEQAKRNKAnleKAKQALESENAELQAELRTLQQA 399
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1220274030 1023 TQTEKPARSPSRHQLHAEAAQAARIERLTQELNSKSRSIQ 1062
Cdd:pfam01576 400 KQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQ 439
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
918-1342 |
3.04e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.95 E-value: 3.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 918 LERRVHRLEAELEgRDEAAKRSLRAMEQQYHRIKLQYE---QQISDLEQRLSEkshsypaisselikshTQTLKAELEEV 994
Cdd:PRK02224 211 LESELAELDEEIE-RYEEQREQARETRDEADEVLEEHEerrEELETLEAEIED----------------LRETIAETERE 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 995 KEVHQKQVSVLQAEVDSLQEQLRQAQASTQTEKParSPSRHQLHAEAAQAaRIERLTQELNSKSRSIQELTRTIERLqRE 1074
Cdd:PRK02224 274 REELAEEVRDLRERLEELEEERDDLLAEAGLDDA--DAEAVEARREELED-RDEELRDRLEECRVAAQAHNEEAESL-RE 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1075 RRTMLSGPSHERpnNEPKRHLGTAKDTKKPSVETFPPTQDEKDYH----PGAFSGThisEVQLEN--DSLRTKLEELEVL 1148
Cdd:PRK02224 350 DADDLEERAEEL--REEAAELESELEEAREAVEDRREEIEELEEEieelRERFGDA---PVDLGNaeDFLEELREERDEL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1149 REKEKvSLQAAVTHAQNqllRIEEQNAEQLTSVKAEHRKEIEHLLARHALEHSSSRVAELTSQLNTQEIIVQHLQGQVKE 1228
Cdd:PRK02224 425 REREA-ELEATLRTARE---RVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLER 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1229 LqgtkEALAVTKLREETLQNQLsKLLEELKEAKEAhspelkhfTSLEQKIQSMEFRysqREKQLQQVIADTRRVVEQEQQ 1308
Cdd:PRK02224 501 A----EDLVEAEDRIERLEERR-EDLEELIAERRE--------TIEEKRERAEELR---ERAAELEAEAEEKREAAAEAE 564
|
410 420 430
....*....|....*....|....*....|....
gi 1220274030 1309 SEVERwrklAQGRAKELEAFRMELDSILDVLREL 1342
Cdd:PRK02224 565 EEAEE----AREEVAELNSKLAELKERIESLERI 594
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
814-933 |
4.40e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.61 E-value: 4.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 814 LLDKDAARLH----AATAEIQKLTEQVEKLKAEVSRRANEQQRKAKEKageAKRIQDLERQLKQKEELLKRRHpnslpal 889
Cdd:COG0542 394 LIDEAAARVRmeidSKPEELDELERRLEQLEIEKEALKKEQDEASFER---LAELRDELAELEEELEALKARW------- 463
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1220274030 890 ilAAASTGAEEDRLDVRSLAQSSQTAALLERRVHRLEAELEGRD 933
Cdd:COG0542 464 --EAEKELIEEIQELKEELEQRYGKIPELEKELAELEEELAELA 505
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
824-1345 |
4.45e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 4.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 824 AATAEIQKLTEQVEKLKAEVSRRANEQQRKAKEKAGEakriqdLERQLKQKEELLKRRHpnslpalILAAASTGAEEDRL 903
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREE------LEKLEKEVKELEELKE-------EIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 904 DVRSLAQSSQTaalLERRVHRLEAELEGRDEAAKR--SLRAMEQQYHRIK---LQYEQQISDLEQRLSEKSHSYPAISSE 978
Cdd:PRK03918 253 SKRKLEEKIRE---LEERIEELKKEIEELEEKVKElkELKEKAEEYIKLSefyEEYLDELREIEKRLSRLEEEINGIEER 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 979 LikSHTQTLKAELEEVKevhqKQVSVLQAEVDSLQEQLRQAQASTQTEKPARSpsrhqlHAEAAQAARIERLTQELNSKS 1058
Cdd:PRK03918 330 I--KELEEKEERLEELK----KKLKELEKRLEELEERHELYEEAKAKKEELER------LKKRLTGLTPEKLEKELEELE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1059 RSIQELTRTIERLQRERRTMlsgpshERPNNEPKRHLGTAKDTK-KPSVETFPPTQDEKdyhpgafsGTHISEVQLENDS 1137
Cdd:PRK03918 398 KAKEEIEEEISKITARIGEL------KKEIKELKKAIEELKKAKgKCPVCGRELTEEHR--------KELLEEYTAELKR 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1138 LRTKLEEL-EVLREKEKVSLQAAVTHAQNQLLRIEEQNAEQLTSVKAEHRKeiehlLARHALEHSSSRVAELTSQLNTQE 1216
Cdd:PRK03918 464 IEKELKEIeEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKK-----YNLEELEKKAEEYEKLKEKLIKLK 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1217 IIVQHLQGQVKELQGTKEALAVTKLREETLQNQLSKLLEELKEAKeahspeLKHFTSLEQKIQSMEFRYSQREKQLQqvi 1296
Cdd:PRK03918 539 GEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELG------FESVEELEERLKELEPFYNEYLELKD--- 609
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 1220274030 1297 adtrrvVEQEQQSEVERWRKLAQgrakELEAFRMELDSILDVLRELQRQ 1345
Cdd:PRK03918 610 ------AEKELEREEKELKKLEE----ELDKAFEELAETEKRLEELRKE 648
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
723-1018 |
4.84e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 4.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 723 QSFNIAELTSQVQAAQKKEERLQEEVRRLKQE----KQALHVD----LEMMRKERDLAKVQAVCksGDKGFELKLLHDKH 794
Cdd:PRK04863 367 QNEVVEEADEQQEENEARAEAAEEEVDELKSQladyQQALDVQqtraIQYQQAVQALERAKQLC--GLPDLTADNAEDWL 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 795 REEVTELK----KRLQwyAKNQELLDKDAARLHAATAE-IQKLTEQVEKLKAevSRRANEQQRKAKEKAGEAKRIQDLER 869
Cdd:PRK04863 445 EEFQAKEQeateELLS--LEQKLSVAQAAHSQFEQAYQlVRKIAGEVSRSEA--WDVARELLRRLREQRHLAEQLQQLRM 520
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 870 QLKQkeelLKRRHPNSLPALILAAASTGAeedrldvrsLAQSSQTAALLERRVHRLEAELEGRDEaAKRSLRAMEQQYHR 949
Cdd:PRK04863 521 RLSE----LEQRLRQQQRAERLLAEFCKR---------LGKNLDDEDELEQLQEELEARLESLSE-SVSEARERRMALRQ 586
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 950 IKLQYEQQISDLEQ-------------RLSEKSHSYPAISSELikshTQTLKAELEEVKEVHQkQVSVLQAEVDSLQEQL 1016
Cdd:PRK04863 587 QLEQLQARIQRLAArapawlaaqdalaRLREQSGEEFEDSQDV----TEYMQQLLERERELTV-ERDELAARKQALDEEI 661
|
..
gi 1220274030 1017 RQ 1018
Cdd:PRK04863 662 ER 663
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
202-488 |
5.83e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 41.31 E-value: 5.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 202 PAYSEDFEEEASDKSDVEPQEKKPERLGMLAkvslHDSLNSTDGALAPAVPSLAVARENRPESKQTDMPALEPAVQSYGQ 281
Cdd:PHA03307 71 PPPGPGTEAPANESRSTPTWSLSTLAPASPA----REGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGP 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 282 SGGSEMEALQEAYRQISGSAGVCEDGQVEAGRTPlslSTLQPASTVESDLPTAEELMQPIGPDSGFTRGFSlQPITEAVP 361
Cdd:PHA03307 147 PPAASPPAAGASPAAVASDAASSRQAALPLSSPE---ETARAPSSPPAEPPPSTPPAAASPRPPRRSSPIS-ASASSPAP 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 362 RSRDNQ--SPLRISSDESPFSSANEGYGGGNTANL---TGGEHPDSYKFTQKSISEEIRRLMQEQDTSSQE----PPPLK 432
Cdd:PHA03307 223 APGRSAadDAGASSSDSSSSESSGCGWGPENECPLprpAPITLPTRIWEASGWNGPSSRPGPASSSSSPRErspsPSPSS 302
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1220274030 433 PKKRQVPAR----------------SNASTSASSRKAPVPSvrvkkpeSKPLHRVPAPSRAAQAAKPPSPPT 488
Cdd:PHA03307 303 PGSGPAPSSprasssssssressssSTSSSSESSRGAAVSP-------GPSPSRSPSPSRPPPPADPSSPRK 367
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1163-1345 |
6.62e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.20 E-value: 6.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1163 AQNQLLRIEEqNAEQLTSVKAEHRKEIEHL--LARHALehsssRVAELTSQLNTQEI--IVQHLQGQVKELQGTKEALAV 1238
Cdd:TIGR02168 177 TERKLERTRE-NLDRLEDILNELERQLKSLerQAEKAE-----RYKELKAELRELELalLVLRLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1239 TKLREETLQNQLSKLLEELKEAKEAHSP----------ELKHFTSLEQKIQSMEFRYSQREKQLQQVIADTRRVVEQEQQ 1308
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRLEVSEleeeieelqkELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELES 330
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1220274030 1309 S------EVERWRKLAQGRAKELEAFRMELDSILDVLRELQRQ 1345
Cdd:TIGR02168 331 KldelaeELAELEEKLEELKEELESLEAELEELEAELEELESR 373
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
693-1263 |
7.28e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.82 E-value: 7.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 693 QRLLTELSFARDR-----MNTNNIQRTIR--ERSIVDQSFNIAELTSQVQAAQKKEERLQEEVRRLKQEKQAL-HVDLEM 764
Cdd:PRK03918 168 GEVIKEIKRRIERlekfiKRTENIEELIKekEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIeELEKEL 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 765 MRKERDLAKVQAVCKSGDKGFELKLLHDKHREEVTELKKRLQWYAKNQELLDKDAARLHAATAEIQKLTEQVEKLKAEVS 844
Cdd:PRK03918 248 ESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 845 RRANEQQRKAKEKAGEAKRIQDLERQL-----------------KQKEELLKRRHPNSLPALI--LAAASTGAEEDRLDV 905
Cdd:PRK03918 328 ERIKELEEKEERLEELKKKLKELEKRLeeleerhelyeeakakkEELERLKKRLTGLTPEKLEkeLEELEKAKEEIEEEI 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 906 RSLaqsSQTAALLERRVHRLEAELEGRDEA------AKRSLRamEQQYHRIKLQYEQQISDLEQRLSEkshsypaissel 979
Cdd:PRK03918 408 SKI---TARIGELKKEIKELKKAIEELKKAkgkcpvCGRELT--EEHRKELLEEYTAELKRIEKELKE------------ 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 980 IKSHTQTLKAELEEVKEVHQKQVSVLQAEvdSLQEQLRqaqastQTEKPARSPSRHQLHAEAAQAARIERLTQELNSKSR 1059
Cdd:PRK03918 471 IEEKERKLRKELRELEKVLKKESELIKLK--ELAEQLK------ELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIK 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1060 SIQELTRTIERLQRERRTMLsgpsHERPNNEPKRhlgtaKDTKKPSVETFPPTQDEKDYHPGAFSGTHISEVQLEN--DS 1137
Cdd:PRK03918 543 SLKKELEKLEELKKKLAELE----KKLDELEEEL-----AELLKELEELGFESVEELEERLKELEPFYNEYLELKDaeKE 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1138 LRTKLEELEVLREK-EKVSLQAAVTHAQNQLLRIEEQNAEQLTSVKAEHRKEIEHLLARHALEHSSSRVAELTSQLNTQE 1216
Cdd:PRK03918 614 LEREEKELKKLEEElDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIK 693
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 1220274030 1217 IIVQHLQGQVKELQGTKEALAVTKLREETLQNQLSKLLEELKEAKEA 1263
Cdd:PRK03918 694 KTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKER 740
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
901-1066 |
7.46e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.33 E-value: 7.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 901 DRLDvRSLAQSSQTAALLERRVHRLEAELEgrdeAAKRSLRAMEQQYHRIKLQY---EQQISDLEQRLSEkshsypaiss 977
Cdd:PRK09039 56 DRLN-SQIAELADLLSLERQGNQDLQDSVA----NLRASLSAAEAERSRLQALLaelAGAGAAAEGRAGE---------- 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 978 elikshtqtLKAELEEVKEVHQK---QVSVLQAEVDSLQEQLRQAQASTQTEKparspsrhqlHAEAAQAARIERLTQEL 1054
Cdd:PRK09039 121 ---------LAQELDSEKQVSARalaQVELLNQQIAALRRQLAALEAALDASE----------KRDRESQAKIADLGRRL 181
|
170
....*....|...
gi 1220274030 1055 NSK-SRSIQELTR 1066
Cdd:PRK09039 182 NVAlAQRVQELNR 194
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1129-1325 |
7.93e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 40.81 E-value: 7.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1129 SEVQLENDSLRTKLEELEVLRE----KEKVSLQAA-----VTHAQNQLLRIEEQNAEQLTSVKAEhrkeIEHLLARHALE 1199
Cdd:TIGR01612 1531 SALAIKNKFAKTKKDSEIIIKEikdaHKKFILEAEkseqkIKEIKKEKFRIEDDAAKNDKSNKAA----IDIQLSLENFE 1606
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 1200 HSSSRVAELTSQLNTQEIIVQHLQGQVKELQ-GTKEalavTKLREETLQ-NQLSKLLEELKEAKEAHSPELKHFTSLEQK 1277
Cdd:TIGR01612 1607 NKFLKISDIKKKINDCLKETESIEKKISSFSiDSQD----TELKENGDNlNSLQEFLESLKDQKKNIEDKKKELDELDSE 1682
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1220274030 1278 IQSMEFRYSQREKQLQQVIADTRRVVEQEQQSEVERWRKLAQGRAKEL 1325
Cdd:TIGR01612 1683 IEKIEIDVDQHKKNYEIGIIEKIKEIAIANKEEIESIKELIEPTIENL 1730
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
792-883 |
8.11e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.84 E-value: 8.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 792 DKHREEVTELKKRLQWYAKNQELLDKDaaRLHAATAEIQKLTEQVEKLKA--EVSRRANEQQRKAKEKAGEAK-RIQDLE 868
Cdd:COG0542 414 DELERRLEQLEIEKEALKKEQDEASFE--RLAELRDELAELEEELEALKArwEAEKELIEEIQELKEELEQRYgKIPELE 491
|
90
....*....|....*
gi 1220274030 869 RQLKQKEELLKRRHP 883
Cdd:COG0542 492 KELAELEEELAELAP 506
|
|
| PRK05431 |
PRK05431 |
seryl-tRNA synthetase; Provisional |
787-901 |
8.80e-03 |
|
seryl-tRNA synthetase; Provisional
Pssm-ID: 235461 [Multi-domain] Cd Length: 425 Bit Score: 40.05 E-value: 8.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 787 LKLLhdkhREEVTELKKRLQwyAKNQELldkDAARLHAATAEIQKLTEQVEKLKAE---VSR------RANEQQRKAKEK 857
Cdd:PRK05431 4 IKLI----RENPEAVKEALA--KRGFPL---DVDELLELDEERRELQTELEELQAErnaLSKeigqakRKGEDAEALIAE 74
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1220274030 858 AGE-AKRIQDLERQLKQKEELLKRRHpNSLPALILAAASTGAEED 901
Cdd:PRK05431 75 VKElKEEIKALEAELDELEAELEELL-LRIPNLPHDSVPVGKDED 118
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
644-874 |
8.90e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 40.22 E-value: 8.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 644 EKLKLIEKEMKEQetliqGYHQENEKLYLQMKALQAQSKQNEEalfmenqrLLTELSFARDRMNTNNIQRTI-------- 715
Cdd:pfam06160 214 EELKEGYREMEEE-----GYALEHLNVDKEIQQLEEQLEENLA--------LLENLELDEAEEALEEIEERIdqlydlle 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 716 RE---RSIVDQsfNIAELTSQVQAAQKKEERLQEEVRRLKQEKQALHVDLEMMRK-ERDLAKVQAVCKSgdkgfELKLLH 791
Cdd:pfam06160 281 KEvdaKKYVEK--NLPEIEDYLEHAEEQNKELKEELERVQQSYTLNENELERVRGlEKQLEELEKRYDE-----IVERLE 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 792 DKH------REEVTELKKRLQWYAKNQELLDKDAARLH----AATAEIQKLTEQVEKLKAEVSRRA----NEQQRKAKEK 857
Cdd:pfam06160 354 EKEvayselQEELEEILEQLEEIEEEQEEFKESLQSLRkdelEAREKLDEFKLELREIKRLVEKSNlpglPESYLDYFFD 433
|
250
....*....|....*..
gi 1220274030 858 AGEakRIQDLERQLKQK 874
Cdd:pfam06160 434 VSD--EIEDLADELNEV 448
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
726-879 |
9.18e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 39.89 E-value: 9.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 726 NIAELTSQVQAAQKKEERLQEEVRRLKQEKQALHVDLEMMRKERDlAKVQAVCKSGDKGFELKLLHDKHREEVTELK-KR 804
Cdd:COG1340 2 KTDELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRD-ELNAQVKELREEAQELREKRDELNEKVKELKeER 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1220274030 805 LQWYAKNQELLDKdAARLHAATAEIQKLTEQVEKLKAEVSRRANEQQRKAKEKAGE---AKRIQDLERQLKQKEELLK 879
Cdd:COG1340 81 DELNEKLNELREE-LDELRKELAELNKAGGSIDKLRKEIERLEWRQQTEVLSPEEEkelVEKIKELEKELEKAKKALE 157
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
727-880 |
9.54e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 9.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 727 IAELTSQVQAAQKKEERLQEEVRRLKQEKQALHVDLEMMRKerDLAKVQAVCKSGDKGFELKLLhdkhREEVTELKKRLQ 806
Cdd:COG1579 33 LAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEA--RIKKYEEQLGNVRNNKEYEAL----QKEIESLKRRIS 106
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1220274030 807 wyAKNQELLDKDaARLHAATAEIQKLTEQVEKLKAEVSRRANEQQRKAKEKAGEAKRIQDLERQLKQK--EELLKR 880
Cdd:COG1579 107 --DLEDEILELM-ERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKipPELLAL 179
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
727-1120 |
9.76e-03 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 40.38 E-value: 9.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 727 IAELTSQVQAAQKKEERLQEEVRRLKQEKQALHVDLEMMRKERDLAKVqavcksgdkgfELKLLHDKHREevtelkkrlq 806
Cdd:NF033838 141 VAEATKKVEEAEKKAKDQKEEDRRNYPTNTYKTLELEIAESDVEVKKA-----------ELELVKEEAKE---------- 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 807 wyAKNQELLDKDAARLHAATAEIQKLTE---QVEKLKAEVSRRANEQQRKAKEKAGEAKRIQDLERQLKqKEELLKRRHP 883
Cdd:NF033838 200 --PRDEEKIKQAKAKVESKKAEATRLEKiktDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAK-RGVLGEPATP 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 884 NSLPALILAAASTGAEEdrldvrSLAQSSQTAallERRVhrleAELEGRDEAAKRSLRAMEQqyhriklqyeqqisdlEQ 963
Cdd:NF033838 277 DKKENDAKSSDSSVGEE------TLPSPSLKP---EKKV----AEAEKKVEEAKKKAKDQKE----------------ED 327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1220274030 964 RLSEKSHSYPAISSELIKSHTQTLKAELEEVKEvhqkqvsvlQAEVDSLQEQLRQAQASTQTEKparspsrhqlhAEAAQ 1043
Cdd:NF033838 328 RRNYPTNTYKTLELEIAESDVKVKEAELELVKE---------EAKEPRNEEKIKQAKAKVESKK-----------AEATR 387
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1220274030 1044 AARIERLTQELNSKSRSIQELTRTIERLQRERRTMLSGPSHERPNNEPKrhlgtaKDTKKPSVETFPPTQDEKDYHP 1120
Cdd:NF033838 388 LEKIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPAPAPQPEKPAPKPE------KPAEQPKAEKPADQQAEEDYAR 458
|
|
| |
