|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
283-619 |
2.54e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 2.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 283 KLEHDAEQAKVELIETQKQLQELENKDLSDVAMKVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQNEKRANELE 362
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 363 QSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIqlktgqEEGLKPKAEDLDACNLKRRKGSFGSIDHLQKLD 442
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL------REALDELRAELTLLNEEAANLRERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 443 EQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKKLRSSQALNTDSLKISTRLNLLEQELSEKN 522
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 523 VQLQtSTAEEKTKISEQVEVLQKEKDQLQKRRHN-------VDEKLKNGRVLSPEE-EHVLFQLEEGIEAL----EAAI- 589
Cdd:TIGR02168 915 RELE-ELREKLAQLELRLEGLEVRIDNLQERLSEeysltleEAEALENKIEDDEEEaRRRLKRLENKIKELgpvnLAAIe 993
|
330 340 350
....*....|....*....|....*....|
gi 1237937910 590 EYrnESIQNRQKSLRASFHNLSRGEANVLE 619
Cdd:TIGR02168 994 EY--EELKERYDFLTAQKEDLTEAKETLEE 1021
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
152-602 |
5.24e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.09 E-value: 5.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 152 EEQDKVLHCQFSDNSDDEESEGQEKSGTRCRSRSWIQKPDSVCSLVELSDTQDETQKSDLENEDLKIDCLQESQELNLQK 231
Cdd:PTZ00121 1293 DEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 232 LKNSERILTEAKQKMREltinIKMKEDLIKELIKTGNDAKSVSKqyslkvtklehdAEQAKVELIETQKQLQELENKD-L 310
Cdd:PTZ00121 1373 KEEAKKKADAAKKKAEE----KKKADEAKKKAEEDKKKADELKK------------AAAAKKKADEAKKKAEEKKKADeA 1436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 311 SDVAMKVKLQKEFRKKMDAAKlRVQVLQKKQQDSKKLASLSIQNE--KRANELEQSVDHMKyQKIQLQRKLREENEKRKQ 388
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAEEAK-KAEEAKKKAEEAKKADEAKKKAEeaKKADEAKKKAEEAK-KKADEAKKAAEAKKKADE 1514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 389 LdaviKRDQQKIKEIQLKTGQEeglKPKAEDLDACNLKRRKgsfgsiDHLQKLDEQKKwlDEEVEKVLNQRQELEELEAD 468
Cdd:PTZ00121 1515 A----KKAEEAKKADEAKKAEE---AKKADEAKKAEEKKKA------DELKKAEELKK--AEEKKKAEEAKKAEEDKNMA 1579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 469 LKKREAIVSKKEALLQE--KSHLENKKLRSSQALNTDSLKISTRLNLLEQELSEKNVQLQTSTAEEKTKiSEQVEVLQKE 546
Cdd:PTZ00121 1580 LRKAEEAKKAEEARIEEvmKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK-AEELKKAEEE 1658
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 547 ----KDQLQKRRHNVDEKLKNGRVLSPEEEHVLFQLEEGIEALEAAIEYRNESIQNRQKS 602
Cdd:PTZ00121 1659 nkikAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKA 1718
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
244-806 |
9.81e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.32 E-value: 9.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 244 QKMRELTINIKMKEDLIKELIKTGNDAKSVSKQYSLKVTKLEHDAEQAKVELIETQKQLQELENKdlsdvAMKVKLQKEF 323
Cdd:PTZ00121 1246 EEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK-----AEEAKKADEA 1320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 324 RKKMDAAKLRVQVLQKKQQDSKKLASLS-IQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKE 402
Cdd:PTZ00121 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAkAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKA 1400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 403 IQLKTGQEEGLKPKAEDLDACNLKRRKGSFGSIDHLQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEAL 482
Cdd:PTZ00121 1401 EEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE 1480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 483 LQEKSHlENKKLRSSQALNTDSLKISTRLNLLEQEL---SEKNVQLQTSTAEEKTKISEQVEVLQKEKDQLQKRRHNVD- 558
Cdd:PTZ00121 1481 EAKKAD-EAKKKAEEAKKKADEAKKAAEAKKKADEAkkaEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKk 1559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 559 -EKLKNGRVLSPEEEHVLFQLEEGIEALEAAIEYRNESIQNRQKSLRASFHNLSRGEANVLEKLACLSPVEIRTILFRYF 637
Cdd:PTZ00121 1560 aEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 638 N-------KVVNLREAERKQQLYNEEMKMKVLERDNMVRELESALDHLKLQCDRrltLQQKEHEQKMQLLLHHFKEQDGE 710
Cdd:PTZ00121 1640 KkeaeekkKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA---LKKEAEEAKKAEELKKKEAEEKK 1716
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 711 GIMETFKTYEDKIQQLEKdlyfYKKTSRDHKKKLKEL-VGEAIRRQLA-PSEYQEAGDGVLKPEGGGMLSEELKWASRPE 788
Cdd:PTZ00121 1717 KAEELKKAEEENKIKAEE----AKKEAEEDKKKAEEAkKDEEEKKKIAhLKKEEEKKAEEIRKEKEAVIEEELDEEDEKR 1792
|
570
....*....|....*...
gi 1237937910 789 SMKLSGREREMDSSASSL 806
Cdd:PTZ00121 1793 RMEVDKKIKDIFDNFANI 1810
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
198-613 |
4.43e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.01 E-value: 4.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 198 ELSDTQDETQKSDLEN---EDLKIDCLQESQELNLQKLKNSERILTEAKQKMRELtiniKMKEDLIK--ELIKTGNDAKS 272
Cdd:PTZ00121 1402 EDKKKADELKKAAAAKkkaDEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA----KKAEEAKKkaEEAKKADEAKK 1477
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 273 VSKQySLKVTKLEHDAEQAKVELIETQKQLQELENKDLSDVAMKVKLQKEFRKKMDAAK---LRVQVLQKKQQDSKKLAS 349
Cdd:PTZ00121 1478 KAEE-AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKadeAKKAEEKKKADELKKAEE 1556
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 350 LSIQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEglKPKAEDLDACNLKRRK 429
Cdd:PTZ00121 1557 LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEA--KIKAEELKKAEEEKKK 1634
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 430 gsfgsIDHLQKLDEQKKWLDEEVEKvlnqRQELEELEADLKKREAIVSKKEALLQEKSHLENKKLRSSQALNTDSLKIST 509
Cdd:PTZ00121 1635 -----VEQLKKKEAEEKKKAEELKK----AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE 1705
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 510 RLNLLEQELSEKNVQLQTSTAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLKNGRVLSPEEEHVLFQLEEGIEALEAAI 589
Cdd:PTZ00121 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL 1785
|
410 420
....*....|....*....|....*...
gi 1237937910 590 ----EYRNESIQNRQKSLRASFHNLSRG 613
Cdd:PTZ00121 1786 deedEKRRMEVDKKIKDIFDNFANIIEG 1813
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
241-612 |
1.61e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 1.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 241 EAKQKMRELTINIKMKEDLIKELIKtgndaksvskqyslKVTKLEHDAEQAKvELIETQKQLQELEnKDLSdvamkVKLQ 320
Cdd:TIGR02168 176 ETERKLERTRENLDRLEDILNELER--------------QLKSLERQAEKAE-RYKELKAELRELE-LALL-----VLRL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 321 KEFRKKMDAAKLRVQVLQKKQQDSkklaslsiqnEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKI 400
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEEL----------TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQK 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 401 KEIQLKTGQEEGLKPKAEDLDACNLKRRkgsfgsIDHLQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKE 480
Cdd:TIGR02168 305 QILRERLANLERQLEELEAQLEELESKL------DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELE 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 481 ALLQEKSHLENKKLRSSQALNTDSLKISTRLNLLEQEL----SEKNVQLQTSTAEEKTKISEQVEVLQKEKDQLQKRRHN 556
Cdd:TIGR02168 379 EQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRerlqQEIEELLKKLEEAELKELQAELEELEEELEELQEELER 458
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1237937910 557 VDEKLKNGRVLSPEEEHVLFQLEEGIEALEA---AIEYRNESIQNRQKSLRASFHNLSR 612
Cdd:TIGR02168 459 LEEALEELREELEEAEQALDAAERELAQLQArldSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
283-605 |
5.44e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.34 E-value: 5.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 283 KLEHdAEQ--AKVELIETQ--KQLQELENKdlSDVAMKVK-LQKEFR-KKMDAAKLRVQVLQKKQQD-SKKLASLSIQNE 355
Cdd:COG1196 180 KLEA-TEEnlERLEDILGEleRQLEPLERQ--AEKAERYReLKEELKeLEAELLLLKLRELEAELEElEAELEELEAELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 356 KRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDacnlkrrkgsfgsi 435
Cdd:COG1196 257 ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELE-------------- 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 436 dhlQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKKLRSSQALNTDSLKISTRLNLLE 515
Cdd:COG1196 323 ---EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 516 QELSEKNVQLQTSTAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLKNGRVLSPEEEHVLFQLEEGIEALEAAIEYRNES 595
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
330
....*....|
gi 1237937910 596 IQNRQKSLRA 605
Cdd:COG1196 480 AELLEELAEA 489
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
216-730 |
6.04e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 6.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 216 LKIDCLQESQELNLQKLKNSERILTEAKQKMRELTINIKMKEDLIKELIKTGNDAKSVSKQYSLKVTKLEHDAEQAKVEL 295
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 296 IETQKQLQELENKDLSDVAMKVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQL 375
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 376 QRKLREENEKRKQLDAVIKRDQQKIKEI-QLKTGQEEGLKPKAEDLDACNLKRRKGSFGSIDHLQKLDEQKKWLDEEVEK 454
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLeEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 455 VLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKKLRSSQALNTDSLK----------------ISTRLNLLEQEL 518
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAgavavligveaayeaaLEAALAAALQNI 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 519 SEKNVQ-LQTSTAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLK-----NGRVLSPEEEHVLFQLEEGIEALEAAIEYR 592
Cdd:COG1196 552 VVEDDEvAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAigaavDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 593 NESIQNRQKSLRASFHNLSRG--EANVLEKLACLSPVEIRTILFRYFNKVVNLREAERKQQLYNEEMKMKVLERDNMVRE 670
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEgeGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE 711
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1237937910 671 LESALDHLKLQCDRRLTLQQKEHEQKMQLLLHHFKEQDGEGI-----METFKTYEDKIQQLEKDL 730
Cdd:COG1196 712 AEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALeelpePPDLEELERELERLEREI 776
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
369-684 |
1.98e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 1.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 369 KYQKIQLQRKLREENEKRKQLDAVIK--RDQQKIKEIQLKTGQE-EGLKPKAEDLDACNLKRRKGSFgsIDHLQKLDEQK 445
Cdd:TIGR02168 171 KERRKETERKLERTRENLDRLEDILNelERQLKSLERQAEKAERyKELKAELRELELALLVLRLEEL--REELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 446 KWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKKLrssQALNTDSLKISTRLNLLEQELSEKNVQL 525
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI---SRLEQQKQILRERLANLERQLEELEAQL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 526 QTStAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLKngrvlspEEEHVLFQLEEGIEALEAAIEYRN----------ES 595
Cdd:TIGR02168 326 EEL-ESKLDELAEELAELEEKLEELKEELESLEAELE-------ELEAELEELESRLEELEEQLETLRskvaqlelqiAS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 596 IQNRQKSLRASFHNLSRGEANVLEKLACLSPVEIRTILFRYFNKVVNLREAERKQQLYNEEMKMKVLERDNMVRELESAL 675
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL 477
|
....*....
gi 1237937910 676 DHLKLQCDR 684
Cdd:TIGR02168 478 DAAERELAQ 486
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
231-747 |
2.37e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.68 E-value: 2.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 231 KLKNSERILTEAKQKMRELTINIKMKE---DLIKELIKTGNDAKSVSKQYSLKVTKLEHDAEQAKVELIETQKQLQELEn 307
Cdd:PRK03918 194 LIKEKEKELEEVLREINEISSELPELReelEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELK- 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 308 KDLSDVAMKVKLQKEFRKKMDA----AKLRVQVLQKKQQDSKKLASLsiqnEKRANELEQSVDHMKYQKIQLQRKLREEN 383
Cdd:PRK03918 273 KEIEELEEKVKELKELKEKAEEyiklSEFYEEYLDELREIEKRLSRL----EEEINGIEERIKELEEKEERLEELKKKLK 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 384 EKRKQLdAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDACNLKRRkgsfgsidhLQKLDEQKKWLDEEVEKVLNQRQELE 463
Cdd:PRK03918 349 ELEKRL-EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKE---------LEELEKAKEEIEEEISKITARIGELK 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 464 ELEADLK---------KREAIVSKKEALLQEKSHLENKKLRSSQALNTDSLKISTRLNLLEQELseKNVQLQTSTAEEKT 534
Cdd:PRK03918 419 KEIKELKkaieelkkaKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKEL--RELEKVLKKESELI 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 535 KISEQVEVLQKEKDQLQKrrHNVDEKLKNGRVLSPEEEHVLfQLEEGIEALEAAIEyRNESIQNRQKSLRASFHNLSRGE 614
Cdd:PRK03918 497 KLKELAEQLKELEEKLKK--YNLEELEKKAEEYEKLKEKLI-KLKGEIKSLKKELE-KLEELKKKLAELEKKLDELEEEL 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 615 ANVLEKL-----ACLSPVEIR-TILFRYFNKVVNLREAERKQQLYNEEMKMKVLERDNMVRELESALDHLKLQCDRRLTL 688
Cdd:PRK03918 573 AELLKELeelgfESVEELEERlKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEEL 652
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1237937910 689 QQK----EHEQKMQLLLHhfKEQDGEGIMETFKTYEDKIQQLEKDLYFYKKTSRDHKKKLKEL 747
Cdd:PRK03918 653 EKKyseeEYEELREEYLE--LSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKEL 713
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
204-566 |
1.17e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 204 DETQKSDlenEDLKIDCLQESQEL----NLQKLKNSERILTEAKQKMRELTINIKMKEDLIKELIKTGNDAKSVSKQYSL 279
Cdd:PTZ00121 1537 DEAKKAE---EKKKADELKKAEELkkaeEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK 1613
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 280 KVTKLEHDAEQAKVELiETQKQLQELENKDlsdvAMKVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLAS-LSIQNEKRA 358
Cdd:PTZ00121 1614 KAEEAKIKAEELKKAE-EEKKKVEQLKKKE----AEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEeAKKAEEDEK 1688
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 359 NELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGlKPKAEDLDACNLKRRKGSFGSIDHL 438
Cdd:PTZ00121 1689 KAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED-KKKAEEAKKDEEEKKKIAHLKKEEE 1767
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 439 QKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREaiVSKKEALLQEKSHLENKKLRSSQALNTDSLKISTRLNLLEQEL 518
Cdd:PTZ00121 1768 KKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKD--IFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEE 1845
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1237937910 519 SEKNVQLQTSTAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLKNGRV 566
Cdd:PTZ00121 1846 ADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKI 1893
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
318-747 |
1.59e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.99 E-value: 1.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 318 KLQKEFRKKMDAAKLRVQVLQKKQQD-SKKLASLSiQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRD 396
Cdd:PRK03918 193 ELIKEKEKELEEVLREINEISSELPElREELEKLE-KEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEEL 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 397 QQKIKEIQLKTGQEEGLKPKAEDLDACNLKRRKgsfgSIDHLQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKreaIV 476
Cdd:PRK03918 272 KKEIEELEEKVKELKELKEKAEEYIKLSEFYEE----YLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEE---LK 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 477 SKKEALLQEKSHLEN--KKLRSSQALNTDSLKISTRLNLLEQELSEKNVQlqtSTAEEKTKISEQVEVLQKEKDQLQKRR 554
Cdd:PRK03918 345 KKLKELEKRLEELEErhELYEEAKAKKEELERLKKRLTGLTPEKLEKELE---ELEKAKEEIEEEISKITARIGELKKEI 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 555 HNVD---EKLKNGRVLSP------EEEHVLFQLEEGIEALEaAIEYRNESIQNRQKSLRASFHNLsRGEANVLEKLACLS 625
Cdd:PRK03918 422 KELKkaiEELKKAKGKCPvcgrelTEEHRKELLEEYTAELK-RIEKELKEIEEKERKLRKELREL-EKVLKKESELIKLK 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 626 PVEIRTILFRYFNKVVNLREAERKQQLYnEEMKMKVLERDNMVRELESALDHLKLQCDRRLTLQQKEHEQKMQLL-LHHF 704
Cdd:PRK03918 500 ELAEQLKELEEKLKKYNLEELEKKAEEY-EKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAeLLKE 578
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 1237937910 705 KEQDGegiMETFKTYEDKIQQLEKdlyFYKK--TSRDHKKKLKEL 747
Cdd:PRK03918 579 LEELG---FESVEELEERLKELEP---FYNEylELKDAEKELERE 617
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
455-730 |
1.68e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 1.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 455 VLNQRQELEELEADLKKREAIVSKKEALLQEKSHlenkklrSSQALNTDSLKISTRLNLLEQELSEKNVQLQTSTAEEKt 534
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRK-------ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE- 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 535 KISEQVEVLQKEKDQLQKRRHNVDEKLKngrvlspEEEHVLFQLEEGIEALEAAIEYRNESIQN---RQKSLRASFHNLS 611
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIEELEERLE-------EAEEELAEAEAEIEELEAQIEQLKEELKAlreALDELRAELTLLN 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 612 RGEANVLEKLACLSPvEIRTILFRYFNKVVNLREAERKQQLYNEEMKMKVLERDNMVRELESALDhlklqcdrrltlQQK 691
Cdd:TIGR02168 817 EEAANLRERLESLER-RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLN------------ERA 883
|
250 260 270
....*....|....*....|....*....|....*....
gi 1237937910 692 EHEQKMQLLLHHFKEQdgegiMETFKTYEDKIQQLEKDL 730
Cdd:TIGR02168 884 SLEEALALLRSELEEL-----SEELRELESKRSELRREL 917
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
203-748 |
1.03e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 203 QDETQKSDLENEDLKIDCLQESQELNLQKLKNSERILTEAKQKMRELTINIKMKEDLIKELIKtgNDAKSVSKQYSLKVT 282
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRK--VDDEEKLKESEKEKK 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 283 KLEHDAEQAKVELIETQKQLQELENKDLSDVAMKVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQNEKRANELE 362
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 363 QSVDhmkyQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKpkaedldacnlkrrkgsfgsiDHLQKLD 442
Cdd:pfam02463 405 KEAQ----LLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEE---------------------LEKQELK 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 443 EQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKKLRssqaLNTDSLKISTRLNLLEQELSEKN 522
Cdd:pfam02463 460 LLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVL----LALIKDGVGGRIISAHGRLGDLG 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 523 VQLQTSTAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLKNGRVLSPEEEHVLFQLEEGIEALEAAIEYRNESIQNRQKS 602
Cdd:pfam02463 536 VAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEA 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 603 LRASFHNLSRGEANVLEKLACLSPVEIRTILFRYFNKVVNLREAER----------KQQLYNEEMKMKVLERDNMVRELE 672
Cdd:pfam02463 616 DEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKsevkaslselTKELLEIQELQEKAESELAKEEIL 695
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1237937910 673 SALDHLKLQCDRRLTLQQKEHEQKmQLLLHHFKEQDGEGIMETFKTYEDKIQQLEKDLYFYKKTSRDHKKKLKELV 748
Cdd:pfam02463 696 RRQLEIKKKEQREKEELKKLKLEA-EELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELS 770
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
456-699 |
1.06e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 456 LNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKKLRSSQALNTDSLKISTRLNLLEQelseknvqlqtsTAEEKTK 535
Cdd:TIGR02169 667 LFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ------------LEQEEEK 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 536 ISEQVEVLQKEKDQLQKRRHNVDEKLKNGRVLSPEEEHVLFQLEEGIEALEAaiEYRNESIQNRQKSLRASFHNLSRGEA 615
Cdd:TIGR02169 735 LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEA--RLSHSRIPEIQAELSKLEEEVSRIEA 812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 616 NVLEKLACLSPVEIRTILFR-------YFNKVVNLREAERKQQLYN-----EEMKMKVLERDNMVRELESALDHLKLQCD 683
Cdd:TIGR02169 813 RLREIEQKLNRLTLEKEYLEkeiqelqEQRIDLKEQIKSIEKEIENlngkkEELEEELEELEAALRDLESRLGDLKKERD 892
|
250 260
....*....|....*....|
gi 1237937910 684 RRLT----LQQKEHEQKMQL 699
Cdd:TIGR02169 893 ELEAqlreLERKIEELEAQI 912
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
332-750 |
2.77e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 2.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 332 LRVQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEE 411
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 412 GLKPKAEdldacnlkrrkgsfgsidhLQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEkshlen 491
Cdd:COG4717 127 LLPLYQE-------------------LEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEE------ 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 492 kklrssqALNTDSLKISTRLNLLEQELSEKNVQLQTSTAEEKtKISEQVEVLQKEKDQL--QKRRHNVDEKLKNGRVL-- 567
Cdd:COG4717 182 -------LLEQLSLATEEELQDLAEELEELQQRLAELEEELE-EAQEELEELEEELEQLenELEAAALEERLKEARLLll 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 568 -----------------SPEEEHVLFQLEEGIEALEAAIEYRNESIQNRQKSLRASFHNLSRGEANVLEKLAC---LSPV 627
Cdd:COG4717 254 iaaallallglggsllsLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAalgLPPD 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 628 EIRTILFRYFNKVVNLREAERKQQLYNEEMKMKVL--ERDNMVREL----ESALDHLKLQCDRRLTLQQKEHEQKMQLLL 701
Cdd:COG4717 334 LSPEELLELLDRIEELQELLREAEELEEELQLEELeqEIAALLAEAgvedEEELRAALEQAEEYQELKEELEELEEQLEE 413
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1237937910 702 hHFKEQDGEGIMETFKTYEDKIQQLEKDLYFYKKTSRDHKKKLKELVGE 750
Cdd:COG4717 414 -LLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAE 461
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
217-615 |
3.37e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 47.77 E-value: 3.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 217 KIDCLQESQELNLQ-KLKNSERILTEAKQKMRELTINIKMKE--DLIKELIKTGNDAKSVSKQYSLKVTKLEHDAE---Q 290
Cdd:COG5022 770 RIKKIQVIQHGFRLrRLVDYELKWRLFIKLQPLLSLLGSRKEyrSYLACIIKLQKTIKREKKLRETEEVEFSLKAEvliQ 849
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 291 AKVELIETQKQLQELENKDLSDvamkvklqkEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQNEKRANELEQsvdhmky 370
Cdd:COG5022 850 KFGRSLKAKKRFSLLKKETIYL---------QSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKK------- 913
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 371 qkiQLQRKLREENEKRKQLDAVIKRdqqKIKEIQLKTGQEEglkpkaedldacnlkrrkgSFGSIDHLQKLDEQKKWLDE 450
Cdd:COG5022 914 ---SLSSDLIENLEFKTELIARLKK---LLNNIDLEEGPSI-------------------EYVKLPELNKLHEVESKLKE 968
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 451 EVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHlENKKLRSSQALNTDSLKISTRLNLLEQELSEknvqlQTSTA 530
Cdd:COG5022 969 TSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSK-QYGALQESTKQLKELPVEVAELQSASKIISS-----ESTEL 1042
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 531 EEKTKISEQVEVLQKEKDQLQKRRHNVDEKLKNGRVLSPEEEhvlfqLEEGIEALEAAIEYRNESIQNRQKSLRASFHNL 610
Cdd:COG5022 1043 SILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLY-----QLESTENLLKTINVKDLEVTNRNLVKPANVLQF 1117
|
....*
gi 1237937910 611 SRGEA 615
Cdd:COG5022 1118 IVAQM 1122
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
372-503 |
5.26e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.69 E-value: 5.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 372 KIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDACNLKRRKgsfgsIDHLQKLDEQKK-WLDE 450
Cdd:PRK12704 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNE-----LQKLEKRLLQKEeNLDR 100
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1237937910 451 EVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENKKLRSSQALNTD 503
Cdd:PRK12704 101 KLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE 153
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
438-728 |
6.14e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 6.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 438 LQKLDEQKkwldEEVEKVLNQRQELEELEADL--KKREAIVSKKEALLQEKSHLENKKLRSSQALNTDSLKISTrLNLLE 515
Cdd:TIGR02168 202 LKSLERQA----EKAERYKELKAELRELELALlvLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEE-LRLEV 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 516 QELSEKNVQLQTSTAEEKTKISEqvevLQKEKDQLQKRRHNVDEKLKngrVLSPEEEHVLFQLEEGIEALeAAIEYRNES 595
Cdd:TIGR02168 277 SELEEEIEELQKELYALANEISR----LEQQKQILRERLANLERQLE---ELEAQLEELESKLDELAEEL-AELEEKLEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 596 IQNRQKSLRASFHNLSRGEANVLEKLAclspvEIRTILFRYFNKVVNLREAERKQQLyneemkmkvlerdnmvrELESAL 675
Cdd:TIGR02168 349 LKEELESLEAELEELEAELEELESRLE-----ELEEQLETLRSKVAQLELQIASLNN-----------------EIERLE 406
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1237937910 676 DHLKLQCDRRLTLQQKEHEQKMQLLLHHFKEQDG------EGIMETFKTYEDKIQQLEK 728
Cdd:TIGR02168 407 ARLERLEDRRERLQQEIEELLKKLEEAELKELQAeleeleEELEELQEELERLEEALEE 465
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
237-822 |
6.92e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.89 E-value: 6.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 237 RILTEAKQKMRELTINIKMKEDLIKELIKtgndaksvskqyslkvtKLEHDAEQAKVELIETQKQLQELENKDLSDVAMK 316
Cdd:pfam02463 169 RKKKEALKKLIEETENLAELIIDLEELKL-----------------QELKLKEQAKKALEYYQLKEKLELEEEYLLYLDY 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 317 VKLQKEFRKKMDA-AKLRVQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKR 395
Cdd:pfam02463 232 LKLNEERIDLLQElLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVD 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 396 DQQKIKEIQLKTGQEEGLKPKAEDLDACNLKRRK-GSFGSIDHLQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREA 474
Cdd:pfam02463 312 DEEKLKESEKEKKKAEKELKKEKEEIEELEKELKeLEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 475 IVSKKEALLQEKSHLENKKLRSSQALNTDSLKISTRLNLLEQELSEKNVQLQTSTAEEKTKISEQVEVLQKEKDQLQKRR 554
Cdd:pfam02463 392 LKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 555 HNVDEKLKngrvlspeEEHVLFQLEEGIEALEAAIEYRNESIQNRQKSLRASFHNLSRGEANVLEKLACLSPVEIRTILF 634
Cdd:pfam02463 472 DLLKETQL--------VKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKV 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 635 RYFNKVVNLREAERKQQLYNEEMKMKVLERDNMVRELESALDHLKLQcdrRLTLQQKEHEQKMQLLLHHFKEQDGEGIME 714
Cdd:pfam02463 544 AISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLP---LKSIAVLEIDPILNLAQLDKATLEADEDDK 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 715 TFKTYEDKIQQLEKDLyfykktSRDHKKKLKELVGEAIRRQLAPSEYQEAGDGVLKPEGGGMLSEELKWASRPESMKLSG 794
Cdd:pfam02463 621 RAKVVEGILKDTELTK------LKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEI 694
|
570 580
....*....|....*....|....*...
gi 1237937910 795 REREMDSSASSLRTQPNPQKLWEDIPEL 822
Cdd:pfam02463 695 LRRQLEIKKKEQREKEELKKLKLEAEEL 722
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
337-569 |
7.54e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 7.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 337 LQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQ------------ 404
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRaeleaqkeelae 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 405 -LKTGQEEGLKPKAEdldacNLKRRKGSFGSIDHLQKLDEQKKWLDEEVEKVLNQRQELEELEADL-KKREAIVSKKEAL 482
Cdd:COG4942 109 lLRALYRLGRQPPLA-----LLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELeAERAELEALLAEL 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 483 LQEKSHLENKKLRSSQALNtdslKISTRLNLLEQELSEKnvqlqtstAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLK 562
Cdd:COG4942 184 EEERAALEALKAERQKLLA----RLEKELAELAAELAEL--------QQEAEELEALIARLEAEAAAAAERTPAAGFAAL 251
|
....*..
gi 1237937910 563 NGRVLSP 569
Cdd:COG4942 252 KGKLPWP 258
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
230-481 |
7.74e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 7.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 230 QKLKNSERILTEAKQKMRELTINIKMKEDLIKELIKTGNDAKSVSKQYSLKVTKLEHDAEQAKVELIETQKQLQElenkd 309
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE----- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 310 lsdvamkvkLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQN----EKRANELEQSVDHMKYQKIQLQRKLREENEK 385
Cdd:COG4942 95 ---------LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDfldaVRRLQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 386 RKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLdacnlkrrkgsfgsidhLQKLDEQKKWLDEEVEKVLNQRQELEEL 465
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEALKAERQKL-----------------LARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|....*.
gi 1237937910 466 EADLKKREAIVSKKEA 481
Cdd:COG4942 229 IARLEAEAAAAAERTP 244
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
275-403 |
1.38e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.54 E-value: 1.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 275 KQYSLKVTKLEHDA----EQAKVElIETQKQLQELENKDLSDvAMKVKLQKEFR-KKMDAAKLRVQVLQKKQQDSKKLAS 349
Cdd:PRK12704 27 KIAEAKIKEAEEEAkrilEEAKKE-AEAIKKEALLEAKEEIH-KLRNEFEKELReRRNELQKLEKRLLQKEENLDRKLEL 104
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1237937910 350 LsiqnEKRANELEQsvdhmkyQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEI 403
Cdd:PRK12704 105 L----EKREEELEK-------KEKELEQKQQELEKKEEELEELIEEQLQELERI 147
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
321-561 |
1.43e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 321 KEFRKKMDAAKLRVQVLQKKQQDSKKLAslsiQNEKRANELEQSVDHMKYQKIQ-----LQRKLREENEKRKQLDAVIKR 395
Cdd:COG4913 238 ERAHEALEDAREQIELLEPIRELAERYA----AARERLAELEYLRAALRLWFAQrrlelLEAELEELRAELARLEAELER 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 396 DQQKIKEIQlktgqeeglkpkaEDLDACNLKRRKGSFGSIDHLQKldeQKKWLDEEVEKVLNQRQELEELEADLKkreai 475
Cdd:COG4913 314 LEARLDALR-------------EELDELEAQIRGNGGDRLEQLER---EIERLERELEERERRRARLEALLAALG----- 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 476 vskkEALLQEKSHLENKKLRSSQALNTdslkISTRLNLLEQELSEKNVQLQTSTAEEKTkiseqvevLQKEKDQLQKRRH 555
Cdd:COG4913 373 ----LPLPASAEEFAALRAEAAALLEA----LEEELEALEEALAEAEAALRDLRRELRE--------LEAEIASLERRKS 436
|
....*.
gi 1237937910 556 NVDEKL 561
Cdd:COG4913 437 NIPARL 442
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
384-622 |
1.55e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 384 EKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDACNLKRRKgsfgsidHLQKLDEQKKWLDEEVEKVlnqRQELE 463
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALAR-------RIRALEQELAALEAELAEL---EKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 464 ELEADLKKREAIVSKKEALLQEKSHLENKKLRSSQALNTDSLKISTRLNLLEQELSEKNVQLQtstaEEKTKISEQVEVL 543
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELR----ADLAELAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1237937910 544 QKEKDQLQKRRHNVDEKLKNGRVLSPEEEHVLFQLEEGIEALEAAIeyrnESIQNRQKSLRASFHNLSRGEANVLEKLA 622
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL----AELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
199-544 |
1.80e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 45.67 E-value: 1.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 199 LSDTQ---DETQKSDLENEDLKIDCLQESQEL-----NLQKLKNSEriLTEAKQKMRELTInikmkEDLIKELIKTGNDA 270
Cdd:PRK11281 65 LEQTLallDKIDRQKEETEQLKQQLAQAPAKLrqaqaELEALKDDN--DEETRETLSTLSL-----RQLESRLAQTLDQL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 271 KSVSK---QYSLKVTKLEHDAEQAKVELIETQKQLQELENKDLSDVAMKVKLQKEFRKKMDAaklrvqvlqkkqqdskKL 347
Cdd:PRK11281 138 QNAQNdlaEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQA----------------EQ 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 348 ASLSIQNEKRANELEQSVdhmkyqkiQLQRKLreeNEKRKQLDAVIKRDQQKIKEIQlktgqeeglkpkaedlDACNLKR 427
Cdd:PRK11281 202 ALLNAQNDLQRKSLEGNT--------QLQDLL---QKQRDYLTARIQRLEHQLQLLQ----------------EAINSKR 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 428 RKGSfgsidhlqkldEQKkwldeeVEKVLNQRQELEELEADLKKREAIVskkeallqekshleNKKLrsSQALntdsLKI 507
Cdd:PRK11281 255 LTLS-----------EKT------VQEAQSQDEAARIQANPLVAQELEI--------------NLQL--SQRL----LKA 297
|
330 340 350
....*....|....*....|....*....|....*...
gi 1237937910 508 STRLN-LLEQELSEKNvQLQTSTAEEKTkISEQVEVLQ 544
Cdd:PRK11281 298 TEKLNtLTQQNLRVKN-WLDRLTQSERN-IKEQISVLK 333
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
252-747 |
1.83e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 252 NIKMKEDLIKELIKTGNDAKSVSKQYSLKVTKLEHDAEQAKVELIETQKQLQELENKDLSDVAMKVKLQKEF---RKKMD 328
Cdd:TIGR04523 118 QKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIdkiKNKLL 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 329 AAKLRVQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLR-----------EENEKRKQLDAVIKRDQ 397
Cdd:TIGR04523 198 KLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISntqtqlnqlkdEQNKIKKQLSEKQKELE 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 398 QKIKEIQLKTGQEEGLKPKAEDL----DACNLKRRKGSFGSIDhlQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKRE 473
Cdd:TIGR04523 278 QNNKKIKELEKQLNQLKSEISDLnnqkEQDWNKELKSELKNQE--KKLEEIQNQISQNNKIISQLNEQISQLKKELTNSE 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 474 AIVSKKEALLQEKSHLENKKLRSSQALNTDSLKISTRLNLLEQELSEKNvqlqtstaEEKTKISEQVEVLQKEKDQLQKR 553
Cdd:TIGR04523 356 SENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQE--------KLNQQKDEQIKKLQQEKELLEKE 427
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 554 RhnvdEKLKNGRVLSPEE----EHVLFQLEEGIEALEAAIEYRNESIQNRQKSLRASFHNLSRGEANVLEKLACLSPVEI 629
Cdd:TIGR04523 428 I----ERLKETIIKNNSEikdlTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNE 503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 630 RTILFRYFNKVVNLREAERKQQLynEEMKMKVLERDNMVRELESALDHLKLQCDRRLTLQQKEHEQKMQLLLHHFK---E 706
Cdd:TIGR04523 504 EKKELEEKVKDLTKKISSLKEKI--EKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQkslK 581
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 1237937910 707 QDGEGIMETFKTYEDKIQQLEKDLYFYKKTSRDHKKKLKEL 747
Cdd:TIGR04523 582 KKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKA 622
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
236-695 |
1.87e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 1.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 236 ERILTEAKQKMRELTINIKMKEDliKELIKTGNDAKSVSKQYSLKVTKLEHDAEQAK------VELI----ETQKQLQEL 305
Cdd:PRK02224 179 ERVLSDQRGSLDQLKAQIEEKEE--KDLHERLNGLESELAELDEEIERYEEQREQARetrdeaDEVLeeheERREELETL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 306 EnKDLSDVAMKVKlqkEFRKKMDAAKLRVQVLQKKQQD-----SKKLASLSIqNEKRANELEQSVDHMKYQKIQLQRKLR 380
Cdd:PRK02224 257 E-AEIEDLRETIA---ETEREREELAEEVRDLRERLEEleeerDDLLAEAGL-DDADAEAVEARREELEDRDEELRDRLE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 381 EENEKRKQLDAVIKRDQQKIKEIQlktGQEEGLKPKAEDLDA----CNLKRRKGSfGSIDHLQK---------------L 441
Cdd:PRK02224 332 ECRVAAQAHNEEAESLREDADDLE---ERAEELREEAAELESeleeAREAVEDRR-EEIEELEEeieelrerfgdapvdL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 442 DEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLE-NKKLRSS---QALNTDSLKISTrlnlLEQE 517
Cdd:PRK02224 408 GNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPEcGQPVEGSphvETIEEDRERVEE----LEAE 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 518 LSEknVQLQTSTAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLKNGRVLSPEEEHVLFQLEEGIEALEAAIEYRNESIQ 597
Cdd:PRK02224 484 LED--LEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 598 ---NRQKSLRASFHNLSRGEANVLEKLACLSpvEIRTILFR---YFNKVVNLREAERKQQLYNEEMKMKVLERDNMVREL 671
Cdd:PRK02224 562 eaeEEAEEAREEVAELNSKLAELKERIESLE--RIRTLLAAiadAEDEIERLREKREALAELNDERRERLAEKRERKREL 639
|
490 500
....*....|....*....|....
gi 1237937910 672 ESALDhlklqcDRRLTLQQKEHEQ 695
Cdd:PRK02224 640 EAEFD------EARIEEAREDKER 657
|
|
| Macoilin |
pfam09726 |
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 ... |
283-545 |
2.45e-04 |
|
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.
Pssm-ID: 462859 [Multi-domain] Cd Length: 670 Bit Score: 44.84 E-value: 2.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 283 KLEHDAEQAKVELIETQKQLQELENKDLS----DVAMKVKLQkEFRKKMDAAKLRVQ-VLQKKQQDSKKLASLsiqnEKR 357
Cdd:pfam09726 399 RLEQDIKKLKAELQASRQTEQELRSQISSltslERSLKSELG-QLRQENDLLQTKLHnAVSAKQKDKQTVQQL----EKR 473
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 358 ANELEQSvdhmkyqKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGqeEGLKPKAEDLDAcnlkrrkgsfgsidH 437
Cdd:pfam09726 474 LKAEQEA-------RASAEKQLAEEKKRKKEEEATAARAVALAAASRGECT--ESLKQRKRELES--------------E 530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 438 LQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENkklrssqalntdSLKISTRLNL-LEQ 516
Cdd:pfam09726 531 IKKLTHDIKLKEEQIRELEIKVQELRKYKESEKDTEVLMSALSAMQDKNQHLEN------------SLSAETRIKLdLFS 598
|
250 260
....*....|....*....|....*....
gi 1237937910 517 ELSEKNVQLQTSTAEEKTKISEQVEVLQK 545
Cdd:pfam09726 599 ALGDAKRQLEIAQGQIYQKDQEIKDLKQK 627
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
217-432 |
3.37e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 3.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 217 KIDCLQESQELNLQKLKNSERILTEAKQKMRELTINIKMKEDLIKELIKTGNDAKSVSKQYSLKVTKLEHDAEQAKVELI 296
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 297 ETQKQLQE-----------------LENKDLSDVAMKVKLQKEFrkkmdaAKLRVQVLQKKQQDSKKLASLSIQNEKRAN 359
Cdd:COG4942 101 AQKEELAEllralyrlgrqpplallLSPEDFLDAVRRLQYLKYL------APARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 360 ELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQ--------LKTGQEEGLKPKAEDLDACNLKRRKGS 431
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQqeaeeleaLIARLEAEAAAAAERTPAAGFAALKGK 254
|
.
gi 1237937910 432 F 432
Cdd:COG4942 255 L 255
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
438-606 |
4.67e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 4.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 438 LQKLDEQKKWLDEEVEKVLNQ----RQELEELEADLKKREAIVSKKEALLQEKSHLENKKLRSSQA-----------LNT 502
Cdd:COG3883 32 LEAAQAELDALQAELEELNEEynelQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRsggsvsyldvlLGS 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 503 DSL-KISTRLNLLEQeLSEKNVQLQTSTAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLKNGRVLSPEEEHVLFQLEEG 581
Cdd:COG3883 112 ESFsDFLDRLSALSK-IADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAE 190
|
170 180
....*....|....*....|....*
gi 1237937910 582 IEALEAAIEYRNESIQNRQKSLRAS 606
Cdd:COG3883 191 EAAAEAQLAELEAELAAAEAAAAAA 215
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
333-605 |
7.10e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.49 E-value: 7.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 333 RVQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKyqkiQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEG 412
Cdd:PRK02224 466 HVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE----DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEE 541
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 413 LKPKAEDLDACNLKRRKGSFGSIDHLQKLDEQKKWLDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLENK 492
Cdd:PRK02224 542 LRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAEL 621
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 493 KLRSSQALNTDSLKISTrlnlLEQELSEKNV---QLQTSTAEE-KTKISEQVEVLQKEKDQLQKRRHNVDEKLKNGRVLS 568
Cdd:PRK02224 622 NDERRERLAEKRERKRE----LEAEFDEARIeeaREDKERAEEyLEQVEEKLDELREERDDLQAEIGAVENELEELEELR 697
|
250 260 270
....*....|....*....|....*....|....*..
gi 1237937910 569 PEEEHvlfqLEEGIEALEAAIEyRNESIQNRQKSLRA 605
Cdd:PRK02224 698 ERREA----LENRVEALEALYD-EAEELESMYGDLRA 729
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
201-586 |
8.04e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 8.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 201 DTQDETQKSDLENedlKIDCLQESQELNLQKLKNSERI----LTEAKQKMRELTINIKMKEDLIKEliktgnDAKSVSKQ 276
Cdd:pfam15921 244 EDQLEALKSESQN---KIELLLQQHQDRIEQLISEHEVeitgLTEKASSARSQANSIQSQLEIIQE------QARNQNSM 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 277 YSLKVTKLEHDAEQAKVELIETQKQLQElenkdlsdvamkvKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQNEK 356
Cdd:pfam15921 315 YMRQLSDLESTVSQLRSELREAKRMYED-------------KIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQK 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 357 RANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDACNLKRRKGSFGSID 436
Cdd:pfam15921 382 LLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 437 HLQKLDEQKKWLDEEVEKVLnqrQELEELEADLKKREAIVSKKEALLQEKShlenkklRSSQALNTDSLKISTRLNLLEQ 516
Cdd:pfam15921 462 KVSSLTAQLESTKEMLRKVV---EELTAKKMTLESSERTVSDLTASLQEKE-------RAIEATNAEITKLRSRVDLKLQ 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 517 ELSE--------KNVQLQTSTAE----EKTKISE----QVE--------------VLQKEKDQLQKRRHNVDEKLKNGRV 566
Cdd:pfam15921 532 ELQHlknegdhlRNVQTECEALKlqmaEKDKVIEilrqQIEnmtqlvgqhgrtagAMQVEKAQLEKEINDRRLELQEFKI 611
|
410 420
....*....|....*....|
gi 1237937910 567 LSPEEEHVLFQLEEGIEALE 586
Cdd:pfam15921 612 LKDKKDAKIRELEARVSDLE 631
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
264-751 |
1.01e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 264 IKTGNDAKSVSKQYSLKVTKLEHDAEQAKveLIETQKQLQELENKDLSDVAMKVKLQKEFRKKMDAAK----LRVQVLQK 339
Cdd:PTZ00121 1178 AEAARKAEEVRKAEELRKAEDARKAEAAR--KAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKkaeeERNNEEIR 1255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 340 KQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKqLDAVIKRDQQKIKEIQLKTGQEEG------L 413
Cdd:PTZ00121 1256 KFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKK-ADEAKKKAEEAKKADEAKKKAEEAkkkadaA 1334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 414 KPKAEDLDACNLKRRKGSFGSIDHLQKLDEQKKWLD-----------------EEVEKVLNQRQELEELEA---DLKKRE 473
Cdd:PTZ00121 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEkkkeeakkkadaakkkaEEKKKADEAKKKAEEDKKkadELKKAA 1414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 474 AIVSKKEAL---LQEKSHLENKKLRSSQALNTDSLKISTRLNLLEQELSEKNVQLQTS-----TAEEKTKISEQVEVLQK 545
Cdd:PTZ00121 1415 AAKKKADEAkkkAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAdeakkKAEEAKKADEAKKKAEE 1494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 546 EKDQLQKRRHNVDEKLKNGRVLSPEEEHVLFQLEEGIEALEAAIEYRNESIQNRQKSLRASFHNLSRGEANVLEKlacLS 625
Cdd:PTZ00121 1495 AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEA---KK 1571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 626 PVEIRTILFRyfnKVVNLREAERKQ-----QLYNEEMKMKVLERDNMVRELESALDHLKLQCDRRLTLQQKEHEQKMQLL 700
Cdd:PTZ00121 1572 AEEDKNMALR---KAEEAKKAEEARieevmKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 1237937910 701 LHHFKEQDGEGIM----ETFKTYEDKIQQLEkdlyfYKKTSRDHKKKLKELVGEA 751
Cdd:PTZ00121 1649 AEELKKAEEENKIkaaeEAKKAEEDKKKAEE-----AKKAEEDEKKAAEALKKEA 1698
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
198-678 |
1.15e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.12 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 198 ELSDTQDETQKSDLENEDLKIDCLQESQEL----NLQKLKNSERILTEAKQ---KMRELTINIKMKEDLIKELIKTGNDa 270
Cdd:TIGR01612 1319 DINDIKKELQKNLLDAQKHNSDINLYLNEIaniyNILKLNKIKKIIDEVKEytkEIEENNKNIKDELDKSEKLIKKIKD- 1397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 271 ksvskQYSLKVTKLEHDAEQAKVELIETQKQLQELENKDLSD---VAMKVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKL 347
Cdd:TIGR01612 1398 -----DINLEECKSKIESTLDDKDIDECIKKIKELKNHILSEesnIDTYFKNADENNENVLLLFKNIEMADNKSQHILKI 1472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 348 ASLSIQNEK--RANELEQSVDHMKYQKIQLQrKLREENEKRKQLDAVIKRD----QQKIKEIQLKTGQEEGLKPKAEDLD 421
Cdd:TIGR01612 1473 KKDNATNDHdfNINELKEHIDKSKGCKDEAD-KNAKAIEKNKELFEQYKKDvtelLNKYSALAIKNKFAKTKKDSEIIIK 1551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 422 ACNLKRRKGSFGSIDHLQKLDEQKK---WLDEEVEK-------VLNQRQELEELEADLKKREAIVSKKEALLQEKSHLEN 491
Cdd:TIGR01612 1552 EIKDAHKKFILEAEKSEQKIKEIKKekfRIEDDAAKndksnkaAIDIQLSLENFENKFLKISDIKKKINDCLKETESIEK 1631
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 492 KKlrSSQALNTDSLKISTRLNLLE--QELSEknvqlqtSTAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLKNgrvlsp 569
Cdd:TIGR01612 1632 KI--SSFSIDSQDTELKENGDNLNslQEFLE-------SLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKN------ 1696
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 570 EEEHVLFQLEEGIEALEAAIEYRNESIQNRQKSLRASFHNLSRGEANVLEKLA----------------------CLSPV 627
Cdd:TIGR01612 1697 YEIGIIEKIKEIAIANKEEIESIKELIEPTIENLISSFNTNDLEGIDPNEKLEeynteigdiyeefielyniiagCLETV 1776
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 1237937910 628 --------EIRTILFRYFNKVVNLREAERKQQLYNEEMKMKvlERDNMVRELESALDHL 678
Cdd:TIGR01612 1777 skepitydEIKNTRINAQNEFLKIIEIEKKSKSYLDDIEAK--EFDRIINHFKKKLDHV 1833
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
334-494 |
1.16e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.39 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 334 VQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQR--KLREENEKRKQLDAVIKRDQQKikeiqlktgqEE 411
Cdd:PRK12705 22 VVLLKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERnqQRQEARREREELQREEERLVQK----------EE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 412 GLKPKAEDLDACNLKRRKGSFGSIDHLQKLDEQKKWLDEEVEKVLNQRQE------LEELEADLKKREAIVSKKealLQE 485
Cdd:PRK12705 92 QLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEqarkllLKLLDAELEEEKAQRVKK---IEE 168
|
....*....
gi 1237937910 486 KSHLENKKL 494
Cdd:PRK12705 169 EADLEAERK 177
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
230-410 |
1.37e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.51 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 230 QKLKNSERILTEAKQKMRELTINIkmkEDLIKELIKTGNDAKsvskQYSLKVTKLEHDAEQAKVELIETQKQLQELENKD 309
Cdd:PRK00409 495 KRLGLPENIIEEAKKLIGEDKEKL---NELIASLEELERELE----QKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKL 567
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 310 LSdvamkvKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIqnekRANELEQSvdhmkyqkiqlQRKLREENEKRKQl 389
Cdd:PRK00409 568 LE------EAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASV----KAHELIEA-----------RKRLNKANEKKEK- 625
|
170 180
....*....|....*....|.
gi 1237937910 390 daviKRDQQKIKEIQLKTGQE 410
Cdd:PRK00409 626 ----KKKKQKEKQEELKVGDE 642
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
197-403 |
1.49e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 197 VELSDTQDETQKSDLENEDLKIDCLQESQELNLQKLKNSERILTE----AKQKMRELTINIKMKEDLIKELIKTGNDAKS 272
Cdd:pfam17380 353 IRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQEleaaRKVKILEEERQRKIQQQKVEMEQIRAEQEEA 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 273 VSKQYSLKVTKLEHDAEQAKVELIETQKQLQELENKDLSDVAMKVKLQKEFRKKMDAAKLRVQVLQKKQQDSK------- 345
Cdd:pfam17380 433 RQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKqamieee 512
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 346 ------------KLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAvIKRDQQKIKEI 403
Cdd:pfam17380 513 rkrkllekemeeRQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEA-MEREREMMRQI 581
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
292-551 |
1.83e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 292 KVELI-------ETQKQLQEL---ENKDLSDVAMKVKLQKEFRKKMDAAKLrvqvLQKKQQDSKKLASL-SIQNEKRANE 360
Cdd:PRK05771 8 KVLIVtlksykdEVLEALHELgvvHIEDLKEELSNERLRKLRSLLTKLSEA----LDKLRSYLPKLNPLrEEKKKVSVKS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 361 LEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEiqlktgqeegLKP-KAEDLDACNLKRRKGS---FGSID 436
Cdd:PRK05771 84 LEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIER----------LEPwGNFDLDLSLLLGFKYVsvfVGTVP 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 437 HlQKLDEQKKWLDEEVEKVLNQRQELEELEA-DLKKREAIVSK--KEALLQEKSHLENKKLrsSQALNtdslKISTRLNL 513
Cdd:PRK05771 154 E-DKLEELKLESDVENVEYISTDKGYVYVVVvVLKELSDEVEEelKKLGFERLELEEEGTP--SELIR----EIKEELEE 226
|
250 260 270
....*....|....*....|....*....|....*...
gi 1237937910 514 LEQELSEKNVQLQTSTAEEKTKISEQVEVLQKEKDQLQ 551
Cdd:PRK05771 227 IEKERESLLEELKELAKKYLEELLALYEYLEIELERAE 264
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
226-615 |
2.72e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 226 ELNLQKLKNSERILTEAKQKMRELTINIKMKEDL---IKELIKTGNDAKSVSKQYSLKVTKLEHDAE--QAKVELIETQK 300
Cdd:COG4717 67 ELNLKELKELEEELKEAEEKEEEYAELQEELEELeeeLEELEAELEELREELEKLEKLLQLLPLYQEleALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 301 QLQELENkdlsdvamkvKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLR 380
Cdd:COG4717 147 RLEELEE----------RLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELE 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 381 EENEKRKQLDAVIKR---------DQQKIKEIQLKTGQE------EGLKPKAEDLDACNLKRRKGSFGSI-DHLQKLDEQ 444
Cdd:COG4717 217 EAQEELEELEEELEQleneleaaaLEERLKEARLLLLIAaallalLGLGGSLLSLILTIAGVLFLVLGLLaLLFLLLARE 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 445 KKWLDEEVEKV--LNQRQELE--ELEADLKKREAIVSKKEALLQEKSHLENKKLRSSQALNTDSLKIstRLNLLEQELSE 520
Cdd:COG4717 297 KASLGKEAEELqaLPALEELEeeELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL--QLEELEQEIAA 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 521 KNVQLQTSTAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKLKNGRVLSpeEEHVLFQLEEGIEALEAAIEYRNE---SIQ 597
Cdd:COG4717 375 LLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELL--EALDEEELEEELEELEEELEELEEeleELR 452
|
410
....*....|....*...
gi 1237937910 598 NRQKSLRASFHNLSRGEA 615
Cdd:COG4717 453 EELAELEAELEQLEEDGE 470
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
226-569 |
3.07e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 41.57 E-value: 3.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 226 ELNLQKLKNSERILTEAKQKmrELTINIKMKEDLIKELIKTGNDakSVSKQYSLKVTKLEhdaeqakvelIETQKQLQEL 305
Cdd:PTZ00108 1005 ERELARLSNKVRFIKHVING--ELVITNAKKKDLVKELKKLGYV--RFKDIIKKKSEKIT----------AEEEEGAEED 1070
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 306 ENKDLSDVAMKVKLQKEF----RKKM------DAAKLRVQvLQKKQQDSKKLASLSIQNEKRAnELEqsvdhmkyqkiQL 375
Cdd:PTZ00108 1071 DEADDEDDEEELGAAVSYdyllSMPIwsltkeKVEKLNAE-LEKKEKELEKLKNTTPKDMWLE-DLD-----------KF 1137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 376 QRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDACNLKRRKGSFGSIDHLQKLDEQKKWLDEEVEKV 455
Cdd:PTZ00108 1138 EEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKK 1217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 456 LNQRQELEELEADLKKREAIVSKKEALLQEKShLENKKLRSSQALNTDSLKISTRLNLLEQELSEKNVQLQTSTA---EE 532
Cdd:PTZ00108 1218 SNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNN-SSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRpdgES 1296
|
330 340 350
....*....|....*....|....*....|....*..
gi 1237937910 533 KTKISEQVEVLQKEKDQLQKRRHNVDEKLKNGRVLSP 569
Cdd:PTZ00108 1297 NGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTAR 1333
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
205-552 |
3.52e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.25 E-value: 3.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 205 ETQKSDLENEDLKIDCLQESQELNLQKLKNSERILTEAKQKMRELTINIKMKEDLIKELIKTGNDAksvskqySLKVTKL 284
Cdd:pfam05483 446 QAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDM-------TLELKKH 518
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 285 EHDAEQAKVELIETQKQLQELENKDLSDVAMKVKLQKEFRKKMDAAKLRvqvLQKKQQDSKKLASLSIQNEKRANELEQS 364
Cdd:pfam05483 519 QEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCK---LDKSEENARSIEYEVLKKEKQMKILENK 595
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 365 VDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEglkpkaedldaCNLKRRKGSFGSI-DHLQKLDE 443
Cdd:pfam05483 596 CNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLE-----------LELASAKQKFEEIiDNYQKEIE 664
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 444 QKKWLDE----EVEKVLNQRQELEELEADLKKR-EAIVSKKEALLQEKSHLENKKLRSSqalntdslkiSTRLNLL---E 515
Cdd:pfam05483 665 DKKISEEklleEVEKAKAIADEAVKLQKEIDKRcQHKIAEMVALMEKHKHQYDKIIEER----------DSELGLYknkE 734
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1237937910 516 QELSEKNVQLQTSTAE---EKTKISEQVEVLQKEKDQLQK 552
Cdd:pfam05483 735 QEQSSAKAALEIELSNikaELLSLKKQLEIEKEEKEKLKM 774
|
|
| TOPEUc |
smart00435 |
DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina ... |
246-383 |
4.05e-03 |
|
DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Pssm-ID: 214661 [Multi-domain] Cd Length: 391 Bit Score: 40.41 E-value: 4.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 246 MRELTINIKMKEDLIKELIKTGNDA-----------KSVSKQYSLKVTKLEHDAEQAKVELIETQKQLQELENKDLSDVA 314
Cdd:smart00435 233 LQEQLKELTAKDGNVAEKILAYNRAnrevailcnhqRTVSKTHEKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRK 312
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1237937910 315 MKVKLQKEFRkkmdaaKLRVQVLQKKQQDSKKLASlsiqnEKRANELEQSVdhmkyQKIQLQRKLREEN 383
Cdd:smart00435 313 LKSKFERDNE------KLDAEVKEKKKEKKKEEKK-----KKQIERLEERI-----EKLEVQATDKEEN 365
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
283-561 |
4.29e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 4.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 283 KLEHDAEQAkVELIETQKQLQELENKDLsdvamkVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASlsiQNEKRANELE 362
Cdd:TIGR02169 202 RLRREREKA-ERYQALLKEKREYEGYEL------LKEKEALERQKEAIERQLASLEEELEKLTEEIS---ELEKRLEEIE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 363 QSVDHMKYQ--------KIQLQRKLREENEKRKQLDAVI--KRDQQKIKEIQLKTGQEE--GLKPKAEDLDacnlkrrkg 430
Cdd:TIGR02169 272 QLLEELNKKikdlgeeeQLRVKEKIGELEAEIASLERSIaeKERELEDAEERLAKLEAEidKLLAEIEELE--------- 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 431 sfGSIDHLQKLDEQKKWLDEEVEKVLNQ-RQELEELEADL-----------KKREAIVSKKEALLQEKSHLENKKLRSSQ 498
Cdd:TIGR02169 343 --REIEEERKRRDKLTEEYAELKEELEDlRAELEEVDKEFaetrdelkdyrEKLEKLKREINELKRELDRLQEELQRLSE 420
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1237937910 499 A---LNTDSLKISTRLNLLEQELSEKNVQLQT------STAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKL 561
Cdd:TIGR02169 421 EladLNAAIAGIEAKINELEEEKEDKALEIKKqewkleQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL 492
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
453-545 |
4.41e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.53 E-value: 4.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 453 EKVLNQRQEL----EELEADLKKREAIVSKKEA-LLQEKSHLENKklrsSQALNtdslKISTRLNLLEQELSEKNVQLQT 527
Cdd:PRK12704 57 EALLEAKEEIhklrNEFEKELRERRNELQKLEKrLLQKEENLDRK----LELLE----KREEELEKKEKELEQKQQELEK 128
|
90
....*....|....*...
gi 1237937910 528 STAEEKTKISEQVEVLQK 545
Cdd:PRK12704 129 KEEELEELIEEQLQELER 146
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
222-485 |
4.49e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.82 E-value: 4.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 222 QESQELNLQKLKNSERILTEAKQKMRELTINIKMKEDLIKELiktgndaksvsKQYSLKVTKLEHDAEQAKVELIETQKQ 301
Cdd:PRK03918 510 EKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKL-----------EELKKKLAELEKKLDELEEELAELLKE 578
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 302 LQELENKDLSDVAMKVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLRE 381
Cdd:PRK03918 579 LEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE 658
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 382 ENEKRKQldaviKRDQQKIKEIQLKTGQEEGLKpkaedldacnlKRRKGSFGSIDHLQKLDEQKKWLDEEVEKVLNQRQE 461
Cdd:PRK03918 659 EEYEELR-----EEYLELSRELAGLRAELEELE-----------KRREEIKKTLEKLKEELEEREKAKKELEKLEKALER 722
|
250 260
....*....|....*....|....
gi 1237937910 462 LEELEADLKKREAIVskKEALLQE 485
Cdd:PRK03918 723 VEELREKVKKYKALL--KERALSK 744
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
198-493 |
6.44e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 6.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 198 ELSDTQDETQKSDLENEDLKIDCLQESQELNLQKLKNSERILTEAKQKMRELTINI-KMKEDLIKELIKTGNDAKSVSKQ 276
Cdd:TIGR02169 726 EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALnDLEARLSHSRIPEIQAELSKLEE 805
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 277 YSLKVTKLEHDAEQaKVELIETQKQLQELENKDLSDVAMKVKLQK-EFRKKMDAAKLRvqvLQKKQQDSKKLASLSIQNE 355
Cdd:TIGR02169 806 EVSRIEARLREIEQ-KLNRLTLEKEYLEKEIQELQEQRIDLKEQIkSIEKEIENLNGK---KEELEEELEELEAALRDLE 881
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 356 KRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDACNLKrrkgsfgsi 435
Cdd:TIGR02169 882 SRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS--------- 952
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1237937910 436 dhLQKLDEQKKWLDEEVEKV--LNQR--QELEELEADL----KKREAIVSKKEALLQEKSHLENKK 493
Cdd:TIGR02169 953 --LEDVQAELQRVEEEIRALepVNMLaiQEYEEVLKRLdelkEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
236-496 |
6.61e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 6.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 236 ERILTEAKQKMRELTINIKMKEDlikELIKTGNDAKSVSKQYSLKVTKLEHDAEQAKVElietqkqlQELEnkdlsdVAM 315
Cdd:pfam17380 340 ERMAMERERELERIRQEERKREL---ERIRQEEIAMEISRMRELERLQMERQQKNERVR--------QELE------AAR 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 316 KVKLQKEFRKKMDAAKLRVQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQR-KLREENEKRKQLDAVI- 393
Cdd:pfam17380 403 KVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERlRQQEEERKRKKLELEKe 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 394 KRDQQKIKEIQLKTGQEEGLKPKAEDLDACNlkRRKGSFGSIDHLQK--LDEQKKWLDEEVEKVLNQRQELEELEADLKK 471
Cdd:pfam17380 483 KRDRKRAEEQRRKILEKELEERKQAMIEEER--KRKLLEKEMEERQKaiYEEERRREAEEERRKQQEMEERRRIQEQMRK 560
|
250 260
....*....|....*....|....*....
gi 1237937910 472 REAIVSKKEALLQEKSHL----ENKKLRS 496
Cdd:pfam17380 561 ATEERSRLEAMEREREMMrqivESEKARA 589
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
321-597 |
6.68e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.34 E-value: 6.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 321 KEFRKKMDAAKlrvQVLQKKQQDSKKLASLSIQNEKRANELEQSVDHMKYQKIQLQRKLREENEKRKQLDAVIKRDQQKI 400
Cdd:pfam02463 166 RLKRKKKEALK---KLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 401 KEIQLKTGQEEGLKPKAEDLDACNLKRRKgsfgsidHLQKLDEQKKWLDEEVEKVLNQRQELEELEAD-LKKREAIVSKK 479
Cdd:pfam02463 243 QELLRDEQEEIESSKQEIEKEEEKLAQVL-------KENKEEEKEKKLQEEELKLLAKEEEELKSELLkLERRKVDDEEK 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 480 EALLQEKSHLENKKLRSSQALNTDSLKISTRLNLLEQELSEKNVQLQTSTAEEKTKISEQVEVLQKEKDQLQK--RRHNV 557
Cdd:pfam02463 316 LKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSaaKLKEE 395
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1237937910 558 DEKLKNGRVLSPEEEHVLFQLEEGIEALEAAIEYRNESIQ 597
Cdd:pfam02463 396 ELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEE 435
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
377-740 |
7.00e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 40.27 E-value: 7.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 377 RKLREENEKRKQLDAVIKRDQQKIKEIQLKTGQEEGLKPKAEDLDACNLKRrkGSFGSIDHLQKLDEQKkwlDEEVEKVL 456
Cdd:PLN02939 38 RRRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQ--KSTSSDDDHNRASMQR---DEAIAAID 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 457 NQRQE------------LEELEADLKKREA-IVSKKEALLQEKSHLEnKKLRSSQALNTdslkistRLNLLEQELSEKNV 523
Cdd:PLN02939 113 NEQQTnskdgeqlsdfqLEDLVGMIQNAEKnILLLNQARLQALEDLE-KILTEKEALQG-------KINILEMRLSETDA 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 524 QLQTStAEEKTkiseQVEVLQkekDQLQKRRHNVDEK--LKNGRVLSPEEEHVLFQLE-----EGIEALEAAI------E 590
Cdd:PLN02939 185 RIKLA-AQEKI----HVEILE---EQLEKLRNELLIRgaTEGLCVHSLSKELDVLKEEnmllkDDIQFLKAELievaetE 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 591 YRNESIQNRQKSLRASFHNLSRGEANVLEKLACLSPVEIRTilfrYFNKVVNLREAERKQQLYNEEMKMkVLERD----N 666
Cdd:PLN02939 257 ERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDC----WWEKVENLQDLLDRATNQVEKAAL-VLDQNqdlrD 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 667 MVRELESALDHLKLQ--CDRRLTLQQkeheQKMQLLLHHFKEQDGEgIMETFKTYEDKIQQ----LEKDLYFYKKTSRDH 740
Cdd:PLN02939 332 KVDKLEASLKEANVSkfSSYKVELLQ----QKLKLLEERLQASDHE-IHSYIQLYQESIKEfqdtLSKLKEESKKRSLEH 406
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
471-596 |
9.07e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.76 E-value: 9.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237937910 471 KREAIVSKKEALLQEKShlENKKLRSSqalntdslkistrlnlLEQELSEKNVQLQTstAEEKTK-----ISEQVEVLQK 545
Cdd:PRK12704 48 KKEAEAIKKEALLEAKE--EIHKLRNE----------------FEKELRERRNELQK--LEKRLLqkeenLDRKLELLEK 107
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1237937910 546 EKDQLQKRRHNVDEKLKNgrvlspeeehvLFQLEEGIEALEAAIEYRNESI 596
Cdd:PRK12704 108 REEELEKKEKELEQKQQE-----------LEKKEEELEELIEEQLQELERI 147
|
|
| |
