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Conserved domains on  [gi|1246741355|ref|NP_001342730|]
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protein duc1 [Schizosaccharomyces pombe]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF1769 pfam08588
Protein of unknown function (DUF1769); Family of fungal protein with unknown function.
20-178 1.49e-35

Protein of unknown function (DUF1769); Family of fungal protein with unknown function.


:

Pssm-ID: 430092  Cd Length: 209  Bit Score: 133.76  E-value: 1.49e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246741355  20 NYEGRPTEVDGPLWVGRILVRVRdfdgfTPDGSPPKRDSEYFRGRSRKFQIQAEGRFKKEYNGDQVIYGTQFDHMISTFP 99
Cdd:pfam08588   1 NNSGTPFPFETELFEGRILVSGA-----IPGGPPPSTPSPYFAGKKRTFSIQVQGRFKKPVPGDDLVFGNEFDRPLRLPP 75
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1246741355 100 ESAFRAGMRIAKYIDPAVYYDKYARSPYIMSPFVACVNTLSAWPAPSRLEDAVISLVEadsqESDTESLPEINDSSDVS 178
Cdd:pfam08588  76 GWLLRLALKFAKYIDPTLEADLYADRPWALSPLLATAQTIRVSPPGDEPPELGASPEE----DDLGPAFAEGGSPLSPA 150
DUF1769 super family cl07268
Protein of unknown function (DUF1769); Family of fungal protein with unknown function.
672-749 8.58e-18

Protein of unknown function (DUF1769); Family of fungal protein with unknown function.


The actual alignment was detected with superfamily member pfam08588:

Pssm-ID: 430092  Cd Length: 209  Bit Score: 82.53  E-value: 8.58e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246741355 672 PIEDNSFIFGEHK---SVKERRKYFSSSKfCRENFFYDKDVVYCMSFFSPHMDFNTFNLNI-GPIRLNVYKHLNsdgHQP 747
Cdd:pfam08588 132 EEDDLGPAFAEGGsplSPAKRRKHFASPK-NRKGFVFDPDDVYTFDFFNPYLDFNTFSLSLpGPVKIDLAKYLD---GQP 207

                  ..
gi 1246741355 748 IR 749
Cdd:pfam08588 208 LR 209
PRK13335 super family cl31400
superantigen-like protein SSL3; Reviewed;
557-704 3.16e-04

superantigen-like protein SSL3; Reviewed;


The actual alignment was detected with superfamily member PRK13335:

Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 43.96  E-value: 3.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246741355 557 TSITSGVPPSNRLKKHVSTPEKIVEERSiDEVSQSNTPSSKQLPQSvDGKTVTANANSTTVAKQPTSNVALTRPKPVRTA 636
Cdd:PRK13335   57 GANSATTQAANTRQERTPKLEKAPNTNE-EKTSASKIEKISQPKQE-EQKSLNISATPAPKQEQSQTTTESTTPKTKVTT 134
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1246741355 637 TSQSKIPKPVKHIPSDSnnldPQLGPWRFANPKVDPiednsfifgehkSVKERRKYFSSSKFCRENFF 704
Cdd:PRK13335  135 PPSTNTPQPMQSTKSDT----PQSPTIKQAQTDMTP------------KYEDLRAYYTKPSFEFEKQF 186
 
Name Accession Description Interval E-value
DUF1769 pfam08588
Protein of unknown function (DUF1769); Family of fungal protein with unknown function.
20-178 1.49e-35

Protein of unknown function (DUF1769); Family of fungal protein with unknown function.


Pssm-ID: 430092  Cd Length: 209  Bit Score: 133.76  E-value: 1.49e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246741355  20 NYEGRPTEVDGPLWVGRILVRVRdfdgfTPDGSPPKRDSEYFRGRSRKFQIQAEGRFKKEYNGDQVIYGTQFDHMISTFP 99
Cdd:pfam08588   1 NNSGTPFPFETELFEGRILVSGA-----IPGGPPPSTPSPYFAGKKRTFSIQVQGRFKKPVPGDDLVFGNEFDRPLRLPP 75
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1246741355 100 ESAFRAGMRIAKYIDPAVYYDKYARSPYIMSPFVACVNTLSAWPAPSRLEDAVISLVEadsqESDTESLPEINDSSDVS 178
Cdd:pfam08588  76 GWLLRLALKFAKYIDPTLEADLYADRPWALSPLLATAQTIRVSPPGDEPPELGASPEE----DDLGPAFAEGGSPLSPA 150
DUF1769 pfam08588
Protein of unknown function (DUF1769); Family of fungal protein with unknown function.
672-749 8.58e-18

Protein of unknown function (DUF1769); Family of fungal protein with unknown function.


Pssm-ID: 430092  Cd Length: 209  Bit Score: 82.53  E-value: 8.58e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246741355 672 PIEDNSFIFGEHK---SVKERRKYFSSSKfCRENFFYDKDVVYCMSFFSPHMDFNTFNLNI-GPIRLNVYKHLNsdgHQP 747
Cdd:pfam08588 132 EEDDLGPAFAEGGsplSPAKRRKHFASPK-NRKGFVFDPDDVYTFDFFNPYLDFNTFSLSLpGPVKIDLAKYLD---GQP 207

                  ..
gi 1246741355 748 IR 749
Cdd:pfam08588 208 LR 209
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
557-704 3.16e-04

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 43.96  E-value: 3.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246741355 557 TSITSGVPPSNRLKKHVSTPEKIVEERSiDEVSQSNTPSSKQLPQSvDGKTVTANANSTTVAKQPTSNVALTRPKPVRTA 636
Cdd:PRK13335   57 GANSATTQAANTRQERTPKLEKAPNTNE-EKTSASKIEKISQPKQE-EQKSLNISATPAPKQEQSQTTTESTTPKTKVTT 134
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1246741355 637 TSQSKIPKPVKHIPSDSnnldPQLGPWRFANPKVDPiednsfifgehkSVKERRKYFSSSKFCRENFF 704
Cdd:PRK13335  135 PPSTNTPQPMQSTKSDT----PQSPTIKQAQTDMTP------------KYEDLRAYYTKPSFEFEKQF 186
 
Name Accession Description Interval E-value
DUF1769 pfam08588
Protein of unknown function (DUF1769); Family of fungal protein with unknown function.
20-178 1.49e-35

Protein of unknown function (DUF1769); Family of fungal protein with unknown function.


Pssm-ID: 430092  Cd Length: 209  Bit Score: 133.76  E-value: 1.49e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246741355  20 NYEGRPTEVDGPLWVGRILVRVRdfdgfTPDGSPPKRDSEYFRGRSRKFQIQAEGRFKKEYNGDQVIYGTQFDHMISTFP 99
Cdd:pfam08588   1 NNSGTPFPFETELFEGRILVSGA-----IPGGPPPSTPSPYFAGKKRTFSIQVQGRFKKPVPGDDLVFGNEFDRPLRLPP 75
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1246741355 100 ESAFRAGMRIAKYIDPAVYYDKYARSPYIMSPFVACVNTLSAWPAPSRLEDAVISLVEadsqESDTESLPEINDSSDVS 178
Cdd:pfam08588  76 GWLLRLALKFAKYIDPTLEADLYADRPWALSPLLATAQTIRVSPPGDEPPELGASPEE----DDLGPAFAEGGSPLSPA 150
DUF1769 pfam08588
Protein of unknown function (DUF1769); Family of fungal protein with unknown function.
672-749 8.58e-18

Protein of unknown function (DUF1769); Family of fungal protein with unknown function.


Pssm-ID: 430092  Cd Length: 209  Bit Score: 82.53  E-value: 8.58e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246741355 672 PIEDNSFIFGEHK---SVKERRKYFSSSKfCRENFFYDKDVVYCMSFFSPHMDFNTFNLNI-GPIRLNVYKHLNsdgHQP 747
Cdd:pfam08588 132 EEDDLGPAFAEGGsplSPAKRRKHFASPK-NRKGFVFDPDDVYTFDFFNPYLDFNTFSLSLpGPVKIDLAKYLD---GQP 207

                  ..
gi 1246741355 748 IR 749
Cdd:pfam08588 208 LR 209
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
557-704 3.16e-04

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 43.96  E-value: 3.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246741355 557 TSITSGVPPSNRLKKHVSTPEKIVEERSiDEVSQSNTPSSKQLPQSvDGKTVTANANSTTVAKQPTSNVALTRPKPVRTA 636
Cdd:PRK13335   57 GANSATTQAANTRQERTPKLEKAPNTNE-EKTSASKIEKISQPKQE-EQKSLNISATPAPKQEQSQTTTESTTPKTKVTT 134
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1246741355 637 TSQSKIPKPVKHIPSDSnnldPQLGPWRFANPKVDPiednsfifgehkSVKERRKYFSSSKFCRENFF 704
Cdd:PRK13335  135 PPSTNTPQPMQSTKSDT----PQSPTIKQAQTDMTP------------KYEDLRAYYTKPSFEFEKQF 186
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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