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Conserved domains on  [gi|1246741419|ref|NP_001342746|]
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splicing-associated factor Saf1 [Schizosaccharomyces pombe]

Protein Classification

Wbp11 and NpwBP domain-containing protein( domain architecture ID 10559541)

Wbp11 and NpwBP domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Wbp11 pfam09429
WW domain binding protein 11; The WW domain is a small protein module with a triple-stranded ...
 4-79 1.63e-15

WW domain binding protein 11; The WW domain is a small protein module with a triple-stranded beta-sheet fold. This is a family of WW domain binding proteins.


:

Pssm-ID: 462795 [Multi-domain]  Cd Length: 76  Bit Score: 69.51  E-value: 1.63e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1246741419   4 KRGLNPVQAESRKKKKREQIKVREERAKRHEERLSHRNMSQMERQLSELTQLESSQALNAHDKQLLQNLQRDMAIM 79
Cdd:pfam09429   1 EKSLNPADAYRKAQKKKELKKNKKERQKVREEKLAKKDPDRLEREIDELKELESSGKLSPHEKERLEELEKDLKAV 76
NpwBP pfam12622
mRNA biogenesis factor; The full-length Wbp11 proteins carry several copies of a PPGPPP motif ...
 115-157 4.81e-14

mRNA biogenesis factor; The full-length Wbp11 proteins carry several copies of a PPGPPP motif throughout their length. This motif is thought to be necessary for folding of the molecule as it helps to bind the WW domain, Wbp11, pfam09429. This domain together with Wbp11 may function as components of an mRNA factory in the nucleus.


:

Pssm-ID: 403727  Cd Length: 47  Bit Score: 65.05  E-value: 4.81e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1246741419 115 PKRSIYYDPIFNPYGVPPPGM---PYREKE-ELSSETDESVIDIPLP 157
Cdd:pfam12622   1 PEKSIYYDPELNPLGKPPPGMkniPYLEKTfKKYEPSDPLILNIPLP 47
 
Name Accession Description Interval E-value
Wbp11 pfam09429
WW domain binding protein 11; The WW domain is a small protein module with a triple-stranded ...
 4-79 1.63e-15

WW domain binding protein 11; The WW domain is a small protein module with a triple-stranded beta-sheet fold. This is a family of WW domain binding proteins.


Pssm-ID: 462795 [Multi-domain]  Cd Length: 76  Bit Score: 69.51  E-value: 1.63e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1246741419   4 KRGLNPVQAESRKKKKREQIKVREERAKRHEERLSHRNMSQMERQLSELTQLESSQALNAHDKQLLQNLQRDMAIM 79
Cdd:pfam09429   1 EKSLNPADAYRKAQKKKELKKNKKERQKVREEKLAKKDPDRLEREIDELKELESSGKLSPHEKERLEELEKDLKAV 76
NpwBP pfam12622
mRNA biogenesis factor; The full-length Wbp11 proteins carry several copies of a PPGPPP motif ...
 115-157 4.81e-14

mRNA biogenesis factor; The full-length Wbp11 proteins carry several copies of a PPGPPP motif throughout their length. This motif is thought to be necessary for folding of the molecule as it helps to bind the WW domain, Wbp11, pfam09429. This domain together with Wbp11 may function as components of an mRNA factory in the nucleus.


Pssm-ID: 403727  Cd Length: 47  Bit Score: 65.05  E-value: 4.81e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1246741419 115 PKRSIYYDPIFNPYGVPPPGM---PYREKE-ELSSETDESVIDIPLP 157
Cdd:pfam12622   1 PEKSIYYDPELNPLGKPPPGMkniPYLEKTfKKYEPSDPLILNIPLP 47
 
Name Accession Description Interval E-value
Wbp11 pfam09429
WW domain binding protein 11; The WW domain is a small protein module with a triple-stranded ...
 4-79 1.63e-15

WW domain binding protein 11; The WW domain is a small protein module with a triple-stranded beta-sheet fold. This is a family of WW domain binding proteins.


Pssm-ID: 462795 [Multi-domain]  Cd Length: 76  Bit Score: 69.51  E-value: 1.63e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1246741419   4 KRGLNPVQAESRKKKKREQIKVREERAKRHEERLSHRNMSQMERQLSELTQLESSQALNAHDKQLLQNLQRDMAIM 79
Cdd:pfam09429   1 EKSLNPADAYRKAQKKKELKKNKKERQKVREEKLAKKDPDRLEREIDELKELESSGKLSPHEKERLEELEKDLKAV 76
NpwBP pfam12622
mRNA biogenesis factor; The full-length Wbp11 proteins carry several copies of a PPGPPP motif ...
 115-157 4.81e-14

mRNA biogenesis factor; The full-length Wbp11 proteins carry several copies of a PPGPPP motif throughout their length. This motif is thought to be necessary for folding of the molecule as it helps to bind the WW domain, Wbp11, pfam09429. This domain together with Wbp11 may function as components of an mRNA factory in the nucleus.


Pssm-ID: 403727  Cd Length: 47  Bit Score: 65.05  E-value: 4.81e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1246741419 115 PKRSIYYDPIFNPYGVPPPGM---PYREKE-ELSSETDESVIDIPLP 157
Cdd:pfam12622   1 PEKSIYYDPELNPLGKPPPGMkniPYLEKTfKKYEPSDPLILNIPLP 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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