|
Name |
Accession |
Description |
Interval |
E-value |
| V-ATPase_V1_A |
TIGR01042 |
V-type (H+)-ATPase V1, A subunit; This models eukaryotic vacuolar (H+)-ATPase that is ... |
17-609 |
0e+00 |
|
V-type (H+)-ATPase V1, A subunit; This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273411 [Multi-domain] Cd Length: 591 Bit Score: 1258.50 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 17 TFGYVHGVSGPVVTACDMAGAAMYELVRVGHSELVGEIIRLEGDMATIQVYEETSGVSVGDPVLRTGKPLSVELGPGIMG 96
Cdd:TIGR01042 1 EYGYIYKVSGPVVVAENMAGAAMYELVRVGHDELVGEIIRLEGDKATIQVYEETSGLTVGDPVLRTGKPLSVELGPGILG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 97 AIFDGIQRPLSDISSQTQSIYIPRGVNVSALSRDIKWEFIPsKNLRVGSHITGGDIYGIVNENSLIKHKIMLPPRNRGSV 176
Cdd:TIGR01042 81 NIFDGIQRPLKAIAEQSQSIYIPRGVNVPALDRDKKWEFTP-KKLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 177 TYIAPPGNYDASDVVLELEFEGVKEKFSMVQVWPVRQVRPVTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGK 256
Cdd:TIGR01042 160 TYIAPAGNYTVDDTVLEVEFQGVKKKFSMLQTWPVRSPRPVTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGAFGCGK 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 257 TVISQSLSKYSNSDVIIYVGCGERGNEMSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPVAAREASIYTGITLSEY 336
Cdd:TIGR01042 240 TVISQSLSKYSNSDAIVYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAREASIYTGITLAEY 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 337 FRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPEREGSVSIVGAVSPPGGD 416
Cdd:TIGR01042 320 FRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPEREGSVSIVGAVSPPGGD 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 417 FSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALDEYYDKHFTEFVPLRTKAKEILQEEEDLAEIVQLV 496
Cdd:TIGR01042 400 FSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALEEFYEKFYPEFVPLRTKAKEILQEEEDLNEIVQLV 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 497 GKASLAETDKITLEVAKLIKDDFLQQNGYTPYDRFCPFYKTVGMLSNMISFYDMARRAVETTAQSDNKITWSIIREHMGE 576
Cdd:TIGR01042 480 GKDALAETDKITLEVAKLIKEDFLQQNGYTPYDRFCPFYKTVGMMRNMIAFYDLARQAVERTAQDDNKITWSIIKESLGD 559
|
570 580 590
....*....|....*....|....*....|...
gi 1279489789 577 ILYKLSSMKFKDPVkDGEAKIKADYAQLLEDMQ 609
Cdd:TIGR01042 560 LLYRLSSMKFEDPS-DGEAKIKADYEKLNEDMQ 591
|
|
| NtpA |
COG1155 |
Archaeal/vacuolar-type H+-ATPase catalytic subunit A/Vma1 [Energy production and conversion]; ... |
15-615 |
0e+00 |
|
Archaeal/vacuolar-type H+-ATPase catalytic subunit A/Vma1 [Energy production and conversion]; Archaeal/vacuolar-type H+-ATPase catalytic subunit A/Vma1 is part of the Pathway/BioSystem: A/V-type ATP synthase
Pssm-ID: 440769 [Multi-domain] Cd Length: 583 Bit Score: 919.87 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 15 ESTFGYVHGVSGPVVTACDMAGAAMYELVRVGHSELVGEIIRLEGDMATIQVYEETSGVSVGDPVLRTGKPLSVELGPGI 94
Cdd:COG1155 1 MMTKGKIVKINGPLVTAEGMGGAKMYEVVYVGEERLIGEVIRIEGDKATIQVYEETSGLKPGEPVESTGEPLSVELGPGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 95 MGAIFDGIQRPLSDISSQTqSIYIPRGVNVSALSRDIKWEFIPSKnlRVGSHITGGDIYGIVNENSLIKHKIMLPPRNRG 174
Cdd:COG1155 81 LGNIFDGIQRPLDKIAEKS-GDFIPRGVDVPALDREKKWDFTPTV--KVGDKVSAGDILGTVQETPLIEHKIMVPPGVSG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 175 SVTYIAPPGNYDASDVVLELE-FEGVKEKFSMVQVWPVRQVRPVTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFG 253
Cdd:COG1155 158 TVKEIAPEGEYTVEDTIAVLEdEDGEEHELTMYQKWPVRRPRPYKEKLPPSEPLITGQRVIDTFFPIAKGGTAAIPGPFG 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 254 CGKTVISQSLSKYSNSDVIIYVGCGERGNEMSEVLRDFPELTmevDGKV-ESIMKRTALVANTSNMPVAAREASIYTGIT 332
Cdd:COG1155 238 TGKTVTQHQLAKWSDADIVVYVGCGERGNEMTEVLEEFPELI---DPKTgRPLMERTVLIANTSNMPVAAREASIYTGIT 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 333 LSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPerEGSVSIVGAVSP 412
Cdd:COG1155 315 IAEYYRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGE--EGSVTIIGAVSP 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 413 PGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALDEYYDKHFTE-FVPLRTKAKEILQEEEDLAE 491
Cdd:COG1155 393 PGGDFSEPVTQNTLRIVKVFWALDASLAYARHYPAINWLTSYSLYLDDLAEWYDENVDPdWSELRNEAMDLLQEEAELQE 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 492 IVQLVGKASLAETDKITLEVAKLIKDDFLQQNGYTPYDRFCPFYKTVGMLSNMISFYDMARRAVEttaqsdNKITWSIIR 571
Cdd:COG1155 473 IVRLVGEDALPDEDRLTLEVARLIREGFLQQNAFDDVDTYCPLEKQYKMLKLILTFYDKAFEALE------KGVPLSEIK 546
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 1279489789 572 EHmgEILYKLSSMKFkDPVKDGEAKIKadyaQLLEDMQNAFRSL 615
Cdd:COG1155 547 EL--PLREKIARMKY-SPENELLEKFD----ELEKEIDEEIEEL 583
|
|
| PRK04192 |
PRK04192 |
V-type ATP synthase subunit A; Provisional |
19-616 |
0e+00 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 235248 [Multi-domain] Cd Length: 586 Bit Score: 889.52 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 19 GYVHGVSGPVVTACDMAGAAMYELVRVGHSELVGEIIRLEGDMATIQVYEETSGVSVGDPVLRTGKPLSVELGPGIMGAI 98
Cdd:PRK04192 5 GKIVRVSGPLVVAEGMGGARMYEVVRVGEEGLIGEIIRIEGDKATIQVYEETSGIKPGEPVEFTGEPLSVELGPGLLGSI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 99 FDGIQRPLSDISSQTqSIYIPRGVNVSALSRDIKWEFIPSknLRVGSHITGGDIYGIVNENSLIKHKIMLPPRNRGSVTY 178
Cdd:PRK04192 85 FDGIQRPLDELAEKS-GDFLERGVYVPALDREKKWEFTPT--VKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 179 IAPPGNYDASDVVLELE-FEGVKEKFSMVQVWPVRQVRPVTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKT 257
Cdd:PRK04192 162 IVSEGDYTVDDTIAVLEdEDGEGVELTMMQKWPVRRPRPYKEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFGSGKT 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 258 VISQSLSKYSNSDVIIYVGCGERGNEMSEVLRDFPELTMEVDGKveSIMKRTALVANTSNMPVAAREASIYTGITLSEYF 337
Cdd:PRK04192 242 VTQHQLAKWADADIVIYVGCGERGNEMTEVLEEFPELIDPKTGR--PLMERTVLIANTSNMPVAAREASIYTGITIAEYY 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 338 RDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPerEGSVSIVGAVSPPGGDF 417
Cdd:PRK04192 320 RDMGYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGE--EGSVTIIGAVSPPGGDF 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 418 SDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALDEYYDKHF-TEFVPLRTKAKEILQEEEDLAEIVQLV 496
Cdd:PRK04192 398 SEPVTQNTLRIVKVFWALDAELADRRHFPAINWLTSYSLYLDQVAPWWEENVdPDWRELRDEAMDLLQREAELQEIVRLV 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 497 GKASLAETDKITLEVAKLIKDDFLQQNGYTPYDRFCPFYKTVGMLSNMISFYDMARRAVEttaqsdNKITWSIIREhmGE 576
Cdd:PRK04192 478 GPDALPEEDRLILEVARLIREDFLQQNAFDPVDTYCPPEKQYEMLKLILTFYDEAFKALE------KGVPVSEILE--LE 549
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 1279489789 577 ILYKLSSMKFkDPVKDGEAKIKAdyaqLLEDMQNAFRSLE 616
Cdd:PRK04192 550 VRDRIARLKY-IPENEYLEKIDE----IFEKLEEELEELI 584
|
|
| ATP_syn_A_arch |
TIGR01043 |
ATP synthase archaeal, A subunit; Archaeal ATP synthase shares extensive sequence similarity ... |
19-613 |
0e+00 |
|
ATP synthase archaeal, A subunit; Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases. [Energy metabolism, ATP-proton motive force interconversion]
Pssm-ID: 130115 [Multi-domain] Cd Length: 578 Bit Score: 808.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 19 GYVHGVSGPVVTACDMAGAAMYELVRVGHSELVGEIIRLEGDMATIQVYEETSGVSVGDPVLRTGKPLSVELGPGIMGAI 98
Cdd:TIGR01043 2 GRIIRVSGPLVVADGMKGAQMYEVVKVGEEGLIGEIIRIEGDKAFIQVYEETSGIKPGEPVVGTGAPLSVELGPGLLGSI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 99 FDGIQRPLSDISSQTQSiYIPRGVNVSALSRDIKWEFIPSknLRVGSHITGGDIYGIVNENSLIKHKIMLPPRNRGSVTY 178
Cdd:TIGR01043 82 YDGVQRPLDVLKEKTGD-FIARGVDAPGLDRDKKWHFKPT--VKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 179 IAPPGNYDASDVVLELEFEGvKEKFSMVQVWPVRQVRPVTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTV 258
Cdd:TIGR01043 159 IAEEGDYTVEDTIAVVDTDG-DEEIKMYQKWPVRIPRPYKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGKTV 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 259 ISQSLSKYSNSDVIIYVGCGERGNEMSEVLRDFPELTMEVDGKveSIMKRTALVANTSNMPVAAREASIYTGITLSEYFR 338
Cdd:TIGR01043 238 TQHQLAKWSDADIVVYIGCGERGNEMTDVLEEFPELKDPKTGK--PLMERTVLIANTSNMPVAAREASIYTGITIAEYFR 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 339 DMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPEREGSVSIVGAVSPPGGDFS 418
Cdd:TIGR01043 316 DMGYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEERVGSVTVIGAVSPPGGDFS 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 419 DPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALDEYYDKHFT-EFVPLRTKAKEILQEEEDLAEIVQLVG 497
Cdd:TIGR01043 396 EPVTQNTLRIVKVFWALDADLAQRRHFPAINWLQSYSLYVDLVQDWWHENVDpDWREMRDEAMDLLQKESELQEIVQLVG 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 498 KASLAETDKITLEVAKLIKDDFLQQNGYTPYDRFCPFYKTVGMLSNMISFYDMARRAVETTAQSDnKITWSIIREhmgei 577
Cdd:TIGR01043 476 PDALPERQKLILEVARMIREAFLQQNAFDPVDTYCPPQKQYRILRAIMNFYDEAMEALERGVPVE-EILKLEVKE----- 549
|
570 580 590
....*....|....*....|....*....|....*.
gi 1279489789 578 lyKLSSMKFKDPVkdgeaKIKADYAQLLEDMQNAFR 613
Cdd:TIGR01043 550 --EIGRMKYEPDN-----DILAKIDEILEKIEKEFK 578
|
|
| V_A-ATPase_A |
cd01134 |
V/A-type ATP synthase catalytic subunit A; V/A-type ATP synthase catalytic subunit A. These ... |
85-457 |
0e+00 |
|
V/A-type ATP synthase catalytic subunit A; V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. Vacuolar (V-type) ATPases play major roles in endomembrane and plasma membrane proton transport in eukaryotes. They are found in multiple intracellular membranes including vacuoles, endosomes, lysosomes, Golgi-derived vesicles, secretory vesicles, as well as the plasma membrane. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Pssm-ID: 410878 [Multi-domain] Cd Length: 288 Bit Score: 623.83 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 85 PLSVELGPGIMGAIFDGIQRPLSDISsQTQSIYIPRGVnvsalsrdikwefipsknlrvgshitggdiygivnenslikh 164
Cdd:cd01134 1 PLSVELGPGLLGSIFDGIQRPLEVIA-ETGSIFIPRGV------------------------------------------ 37
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 165 kimlpprnrgsvtyiappgnydasdvvlelefegvkekfsMVQVWPVRQVRPVTEKLPANHPLLTGQRVLDALFPCVQGG 244
Cdd:cd01134 38 ----------------------------------------NVQRWPVRQPRPVKEKLPPNVPLLTGQRVLDTLFPVAKGG 77
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 245 TTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERGNEMSEVLRDFPELTMEVDGkvESIMKRTALVANTSNMPVAARE 324
Cdd:cd01134 78 TAAIPGPFGCGKTVISQSLSKWSNSDVVIYVGCGERGNEMAEVLEEFPELKDPITG--ESLMERTVLIANTSNMPVAARE 155
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 325 ASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPEREGSV 404
Cdd:cd01134 156 ASIYTGITIAEYFRDMGYNVSLMADSTSRWAEALREISGRLEEMPAEEGYPAYLGARLAEFYERAGRVRCLGSPGREGSV 235
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1279489789 405 SIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKY 457
Cdd:cd01134 236 TIVGAVSPPGGDFSEPVTQATLRIVQVFWGLDKKLAQRRHFPSINWLISYSKY 288
|
|
| PRK14698 |
PRK14698 |
V-type ATP synthase subunit A; Provisional |
257-606 |
4.07e-118 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 184795 [Multi-domain] Cd Length: 1017 Bit Score: 375.51 E-value: 4.07e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 257 TVISQSLSKYSNSDVIIYVGCGERGNEMSEVLRDFPELTMEVDGKveSIMKRTALVANTSNMPVAAREASIYTGITLSEY 336
Cdd:PRK14698 670 TVTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGK--PLMERTVLIANTSNMPVAAREASIYTGITIAEY 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 337 FRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGNPEREGSVSIVGAVSPPGGD 416
Cdd:PRK14698 748 FRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGD 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 417 FSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALDEYYDKHFT-EFVPLRTKAKEILQEEEDLAEIVQL 495
Cdd:PRK14698 828 FSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNVDpEWKAMRDKAMELLQKEAELQEIVRI 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 496 VGKASLAETDKITLEVAKLIKDDFLQQNGYTPYDRFCPFYKTVGMLSNMISFYDMARRAVETTAQSDnKITWSIIREHMG 575
Cdd:PRK14698 908 VGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMDAISRGVPLE-EIAKLPVREEIG 986
|
330 340 350
....*....|....*....|....*....|.
gi 1279489789 576 EilyklssMKFKDPVKDGEAKIKADYAQLLE 606
Cdd:PRK14698 987 R-------MKFEPDIEKIKALIDKTNEQFDE 1010
|
|
| ATP-synt_ab |
pfam00006 |
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP ... |
230-455 |
7.98e-103 |
|
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Pssm-ID: 425417 [Multi-domain] Cd Length: 212 Bit Score: 310.44 E-value: 7.98e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 230 GQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERGNEMSEVLRDFPEltmevdgkvESIMKRT 309
Cdd:pfam00006 1 GIRAIDGLLPIGRGQRIGIFGGSGVGKTVLAGMIARQASADVVVYALIGERGREVREFIEELLG---------SGALKRT 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 310 ALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERA 389
Cdd:pfam00006 72 VVVVATSDEPPLARYRAPYTALTIAEYFRDQGKDVLLIMDSLTRFAEALREISLALGEPPGREGYPPSVFSLLARLLERA 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1279489789 390 GRVKclgnpEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYS 455
Cdd:pfam00006 152 GRVK-----GKGGSITALPTVLVPGDDITDPIPDNTRSILDGQIVLSRDLAEKGHYPAIDVLASVS 212
|
|
| RecA-like_ion-translocating_ATPases |
cd19476 |
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the ... |
205-457 |
1.11e-90 |
|
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the NTP-binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410884 [Multi-domain] Cd Length: 270 Bit Score: 281.27 E-value: 1.11e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 205 MVQVWPVRQVRP-VTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSNS---DVIIYVGCGER 280
Cdd:cd19476 28 TKQRRPIHLKAPnPIERLPPEEPLQTGIKVIDLLAPYGRGQKIGIFGGSGVGKTVLAMQLARNQAKahaGVVVFAGIGER 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 281 GNEMSEVLRDFPELtmevdgkveSIMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALRE 360
Cdd:cd19476 108 GREVNDLYEEFTKS---------GAMERTVVVANTANDPPGARMRVPYTGLTIAEYFRDNGQHVLLIIDDISRYAEALRE 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 361 ISGRLAEMPADSGYPAYLGARLASFYERAGRVKclgnpEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLA 440
Cdd:cd19476 179 MSALLGEPPGREGYPPYLFTKLATLYERAGKVK-----DGGGSITAIPAVSTPGDDLTDPIPDNTFAILDGQIVLSRELA 253
|
250
....*....|....*..
gi 1279489789 441 QRKHFPSVNWLISYSKY 457
Cdd:cd19476 254 RKGIYPAINVLDSTSRV 270
|
|
| PRK14698 |
PRK14698 |
V-type ATP synthase subunit A; Provisional |
19-263 |
5.01e-73 |
|
V-type ATP synthase subunit A; Provisional
Pssm-ID: 184795 [Multi-domain] Cd Length: 1017 Bit Score: 253.41 E-value: 5.01e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 19 GYVHGVSGPVVTACDMAGAAMYELVRVGHSELVGEIIRLEGDMATIQVYEETSGVSVGDPVLRTGKPLSVELGPGIMGAI 98
Cdd:PRK14698 5 GRIIRVTGPLVIADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGLKPGEPVEGTGSSLSVELGPGLLTSI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 99 FDGIQRPLSDISSQTQSiYIPRGVNVSALSRDIKWEFIPskNLRVGSHITGGDIYGIVNENSLIKHKIMLPPRNRGSVTY 178
Cdd:PRK14698 85 YDGIQRPLEVIREKSGD-FIARGISAPALPRDKKWHFIP--KVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 179 IAPPGNYDASDVVLELEF-EGVKEKFSMVQVWPVRQVRPVTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKT 257
Cdd:PRK14698 162 IADEGEYTIEEVIAKVKTpSGEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGKC 241
|
....*.
gi 1279489789 258 VISQSL 263
Cdd:PRK14698 242 VDGDTL 247
|
|
| ATP-synt_ab_Xtn |
pfam16886 |
ATPsynthase alpha/beta subunit N-term extension; ATP-synt_ab_Xtn is an extension of the ... |
99-221 |
3.38e-64 |
|
ATPsynthase alpha/beta subunit N-term extension; ATP-synt_ab_Xtn is an extension of the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. It is found from bacteria to humans, and was not modelled in family ATP-synt_ab, pfam00006.
Pssm-ID: 465299 [Multi-domain] Cd Length: 120 Bit Score: 206.87 E-value: 3.38e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 99 FDGIQRPLSDISSQTQSiYIPRGVNVSALSRDIKWEFIPskNLRVGSHITGGDIYGIVNENSLIKHKIMLPPRNRGSVTY 178
Cdd:pfam16886 1 FDGIQRPLEKIAEKSGS-FIPRGVDVPALDREKKWEFTP--TVKVGDKVSGGDILGTVQETSLIEHKIMVPPGVSGTVTE 77
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1279489789 179 IAPPGNYDASDVVLELEFEGVKEKFSMVQVWPVRQVRPVTEKL 221
Cdd:pfam16886 78 IAPEGEYTVEDTIAEVEDEGKEKELTMMQKWPVRRPRPYKEKL 120
|
|
| ATP-synt_V_A-type_alpha_C |
cd18111 |
V/A-type ATP synthase catalytic subunit A (alpha), C-terminal domain; The alpha (A) subunit of ... |
472-577 |
8.50e-51 |
|
V/A-type ATP synthase catalytic subunit A (alpha), C-terminal domain; The alpha (A) subunit of the V1/A1 complex of V/A-type ATP synthases, C-terminal domain. The V- and A-type family of ATPases are composed of two linked multi-subunit complexes: the V1 and A1 complexes contain three copies each of the alpha and beta subunits that form the soluble catalytic core, which is involved in ATP synthesis/hydrolysis, and the Vo or Ao complex that forms the membrane-embedded proton pore. The A-ATP synthase (AoA1-ATPase) is found in archaea and functions like F-ATP synthase. Structurally, however, the A-ATP synthase is more closely related to the V-ATP synthase (vacuolar VoV1-ATPase), which is a proton-translocating ATPase responsible for acidification of eukaryotic intracellular compartments and for ATP synthesis in archaea and some eubacteria. Collectively, the V- and A-type synthases can function in both ATP synthesis and hydrolysis modes.
Pssm-ID: 349746 [Multi-domain] Cd Length: 105 Bit Score: 170.65 E-value: 8.50e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 472 FVPLRTKAKEILQEEEDLAEIVQLVGKASLAETDKITLEVAKLIKDDFLQQNGYTPYDRFCPFYKTVGMLSNMISFYDMA 551
Cdd:cd18111 1 WVELRTEAMEILQEEAELQEIVQLVGPDALPEEDRLTLEVARMIREDFLQQNAFDEVDTYCPLEKQYKMLKLILTFYDKA 80
|
90 100
....*....|....*....|....*.
gi 1279489789 552 RRAVEtTAQSDNKITWSIIREHMGEI 577
Cdd:cd18111 81 LEALE-KGVPLSKILELPVREKIARM 105
|
|
| fliI_yscN |
TIGR01026 |
ATPase, FliI/YscN family; This family of ATPases demonstrates extensive homology with ATP ... |
44-522 |
1.03e-45 |
|
ATPase, FliI/YscN family; This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. [Energy metabolism, ATP-proton motive force interconversion]
Pssm-ID: 273401 [Multi-domain] Cd Length: 440 Bit Score: 167.55 E-value: 1.03e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 44 RVGHSELVGEIIRLEGDMATIQVYEETSGVSVGDPVLRTGKPLSVELGPGIMGAIFDGIQRPLSdissqtqsiyiprgvn 123
Cdd:TIGR01026 53 RGSEGRLVAEVVGFNGEFVFLMPYEEVEGVRPGSKVLATGEGLSIKVGDGLLGRVLDGLGKPID---------------- 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 124 vsalsrdikwefipsknlrvgshiTGGDIYGIVNENSLIKHKImlPPRNRGsvtyiappgnydasdvvlelefegvkekf 203
Cdd:TIGR01026 117 ------------------------GKGKFLDNVETEGLITAPI--NPLKRA----------------------------- 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 204 smvqvwPVRQVrpvteklpanhpLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERGNE 283
Cdd:TIGR01026 142 ------PIREI------------LSTGVRSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGRE 203
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 284 msevLRDFPELTMEVDGkvesiMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISG 363
Cdd:TIGR01026 204 ----VREFIEHDLGEEG-----LKRSVVVVATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGL 274
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 364 RLAEMPADSGYPAYLGARLASFYERAGrvkclgnPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRK 443
Cdd:TIGR01026 275 AAGEPPATKGYTPSVFSTLPRLLERAG-------ASGKGSITAFYTVLVEGDDMNEPIADSVRGILDGHIVLSRALAQRG 347
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 444 HFPSVNWLISYSKYMRAL--DEYYDKhftefvplRTKAKEIL---QEEEDLAEIvQLVGKASLAETDKITLEVAKLIKdd 518
Cdd:TIGR01026 348 HYPAIDVLASISRLMTAIvsEEHRRA--------ARKFRELLskyKDNEDLIRI-GAYQRGSDRELDFAIAKYPKLER-- 416
|
....
gi 1279489789 519 FLQQ 522
Cdd:TIGR01026 417 FLKQ 420
|
|
| PRK06820 |
PRK06820 |
EscN/YscN/HrcN family type III secretion system ATPase; |
18-546 |
2.03e-41 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180712 [Multi-domain] Cd Length: 440 Bit Score: 155.74 E-value: 2.03e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 18 FGYVHGVsGPVVTACDMAGAAMYELVRVGHSELVGEIIRLEGDMATIQVYEETSGVSVGDPVLRTGKPLSVELGPGIMGA 97
Cdd:PRK06820 30 RGPIVEI-GPTLLRASLPGVAQGELCRIEPQGMLAEVVSIEQEMALLSPFASSDGLRCGQWVTPLGHMHQVQVGADLAGR 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 98 IFDGIQRPLSDissqtqsiYIPRGVNVSALsrdikwefipsknlrvgshitggdiygivnenslikhkimlpprnrgsvt 177
Cdd:PRK06820 109 ILDGLGAPIDG--------GPPLTGQWREL-------------------------------------------------- 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 178 YIAPPGnydasdvvlelefegvkekfsmvqvwpvrqvrPVTEKlPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKT 257
Cdd:PRK06820 131 DCPPPS--------------------------------PLTRQ-PIEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKS 177
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 258 VISQSLSKYSNSDVIIYVGCGERGNEmsevLRDFPELTMEVDGKvesimKRTALVANTSNMPVAAREASIYTGITLSEYF 337
Cdd:PRK06820 178 TLLGMLCADSAADVMVLALIGERGRE----VREFLEQVLTPEAR-----ARTVVVVATSDRPALERLKGLSTATTIAEYF 248
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 338 RDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGrvkclgnPEREGSVSIVGAVSPPGGDF 417
Cdd:PRK06820 249 RDRGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTG-------NSDRGSITAFYTVLVEGDDM 321
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 418 SDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALDEyydkhfTEFVPLRTKAKEILQEEEDLAEIVQlVG 497
Cdd:PRK06820 322 NEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVS------AGQLAMAQKLRRMLACYQEIELLVR-VG 394
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 1279489789 498 ---KASLAETDKiTLEVAKLIKdDFLQQNGytpyDRFCPFYKTVGMLSNMIS 546
Cdd:PRK06820 395 eyqAGEDLQADE-ALQRYPAIC-AFLQQDH----SETAHLETTLEHLAQVVG 440
|
|
| FliI |
COG1157 |
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular ... |
8-545 |
3.77e-40 |
|
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440771 [Multi-domain] Cd Length: 433 Bit Score: 152.11 E-value: 3.77e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 8 KIRDEDKESTFGYVHGVSGPVVTAcdmAG--AAMYELVRV---GHSELVGEIIRLEGDMATIQVYEETSGVSVGDPVLRT 82
Cdd:COG1157 10 RLEELPPVRVSGRVTRVVGLLIEA---VGpdASIGELCEIetaDGRPVLAEVVGFRGDRVLLMPLGDLEGISPGARVVPT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 83 GKPLSVELGPGIMGAIFDGIQRPLSDissqtqsiyipRGvnvsalsrdikwefipsknlrvgshitggdiygivnensli 162
Cdd:COG1157 87 GRPLSVPVGDGLLGRVLDGLGRPLDG-----------KG----------------------------------------- 114
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 163 khkimlPPRNRGSVTYIAPPGNYdasdvvleLEfegvkekfsmvqvwpvRQvrPVTEklpanhPLLTGQRVLDALFPCVQ 242
Cdd:COG1157 115 ------PLPGEERRPLDAPPPNP--------LE----------------RA--RITE------PLDTGVRAIDGLLTVGR 156
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 243 G---GTTAipGAfGCGKTVISQSLSKYSNSDVIIyVG-CGERGNEmsevLRDFPELTMEVDGkvesiMKRTALVANTSNM 318
Cdd:COG1157 157 GqriGIFA--GS-GVGKSTLLGMIARNTEADVNV-IAlIGERGRE----VREFIEDDLGEEG-----LARSVVVVATSDE 223
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 319 PVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISgrLA--EMPADSGYPAYLGARLASFYERAGrvkclg 396
Cdd:COG1157 224 PPLMRLRAAYTATAIAEYFRDQGKNVLLLMDSLTRFAMAQREIG--LAagEPPATRGYPPSVFALLPRLLERAG------ 295
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 397 nPEREGSVSIVGAVSPPGGDFSDPVTSATLGI-----VqvfwgLDKKLAQRKHFPSVNWLISYSKYMRAL--DEYYDkhf 469
Cdd:COG1157 296 -NGGKGSITAFYTVLVEGDDMNDPIADAVRGIldghiV-----LSRKLAERGHYPAIDVLASISRVMPDIvsPEHRA--- 366
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 470 tefvpLRTKAKEIL---QEEEDLaeIvqLVG---KASLAETDK-ITLeVAKLikDDFLQQngytPYDRFCPFYKTVGMLS 542
Cdd:COG1157 367 -----LARRLRRLLaryEENEDL--I--RIGayqPGSDPELDEaIAL-IPAI--EAFLRQ----GMDERVSFEESLAQLA 430
|
...
gi 1279489789 543 NMI 545
Cdd:COG1157 431 ELL 433
|
|
| ATP-synt_V_A-type_alpha_N |
cd18119 |
V/A-type ATP synthase catalytic subunit A (alpha), N-terminal domain; The alpha (A) subunit of ... |
18-84 |
4.09e-39 |
|
V/A-type ATP synthase catalytic subunit A (alpha), N-terminal domain; The alpha (A) subunit of the V1/A1 complexes of V/A-type ATP synthases, N-terminal domain. The V- and A-type family of ATPases are composed of two linked multi-subunit complexes: the V1 or A1 complex contain three copies each of the alpha and beta subunits that form the soluble catalytic core, which is involved in ATP synthesis/hydrolysis, and the Vo or Ao complex that forms the membrane-embedded proton pore. The A-ATP synthase (AoA1-ATPase) is found in archaea and functions like F-ATP synthase. Structurally, however, the A-ATP synthase is more closely related to the V-ATP synthase (vacuolar VoV1-ATPase), which is a proton-translocating ATPase responsible for acidification of eukaryotic intracellular compartments and for ATP synthesis in archaea and some eubacteria. Collectively, the V- and A-type synthases can function in both ATP synthesis and hydrolysis modes.
Pssm-ID: 349743 [Multi-domain] Cd Length: 67 Bit Score: 137.66 E-value: 4.09e-39
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1279489789 18 FGYVHGVSGPVVTACDMAGAAMYELVRVGHSELVGEIIRLEGDMATIQVYEETSGVSVGDPVLRTGK 84
Cdd:cd18119 1 KGKIYRVSGPVVVAEGMSGAAMYELVRVGEEGLIGEIIRLEGDKATIQVYEETSGLKVGEPVERTGK 67
|
|
| ATPase_flagellum-secretory_path_III |
cd01136 |
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; ... |
222-456 |
9.48e-39 |
|
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton-driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Pssm-ID: 410880 [Multi-domain] Cd Length: 265 Bit Score: 143.47 E-value: 9.48e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 222 PANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERGNEmsevLRDFPELTMEVDGk 301
Cdd:cd01136 46 PIEQPLPTGVRAIDGLLTCGEGQRIGIFAGSGVGKSTLLGMIARNTDADVNVIALIGERGRE----VREFIEKDLGEEG- 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 302 vesiMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGAR 381
Cdd:cd01136 121 ----LKRSVLVVATSDESPLLRVRAAYTATAIAEYFRDQGKKVLLLMDSLTRFAMAQREVGLAAGEPPTRRGYPPSVFAL 196
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1279489789 382 LASFYERAGrvkclgnPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSK 456
Cdd:cd01136 197 LPRLLERAG-------NGEKGSITAFYTVLVEGDDFNDPIADEVRSILDGHIVLSRRLAERGHYPAIDVLASISR 264
|
|
| FliI_clade1 |
TIGR03496 |
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of ... |
19-523 |
1.10e-34 |
|
flagellar protein export ATPase FliI; Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274607 [Multi-domain] Cd Length: 411 Bit Score: 136.07 E-value: 1.10e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 19 GYVHGVSGPVVTA--CDMAGAAMYELVRVGHSELVGEIIRLEGDMATIQVYEETSGVSVGDPVLRTGKPLSVELGPGIMG 96
Cdd:TIGR03496 1 GRVTRVVGLVLEAvgLRAPVGSRCEIESSDGDPIEAEVVGFRGDRVLLMPLEDVEGLRPGARVFPLGGPLRLPVGDSLLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 97 AIFDGIQRPLSDISsqtqsiyiprgvnvsalsrdikwefipsknlrvgshitggdiygivnenslikhkimlPPRNRGSV 176
Cdd:TIGR03496 81 RVIDGLGRPLDGKG----------------------------------------------------------PLDAGERV 102
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 177 TYIAPPGNydasdvvlelefegvkekfsmvqvwPVRQvRPVTEklpanhPLLTGQRVLDALFPCVQGGTTAIPGAFGCGK 256
Cdd:TIGR03496 103 PLYAPPIN-------------------------PLKR-APIDE------PLDVGVRAINGLLTVGRGQRMGIFAGSGVGK 150
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 257 TVISQSLSKYSNSDVIIyVG-CGERGNEmsevLRDFPELTMEVDGkvesiMKRTALVANTSNMPVAAREASIYTGITLSE 335
Cdd:TIGR03496 151 STLLGMMARYTEADVVV-VGlIGERGRE----VKEFIEDILGEEG-----LARSVVVAATADESPLMRLRAAFYATAIAE 220
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 336 YFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGrvkclgnPEREGSVSIVG--AVSPP 413
Cdd:TIGR03496 221 YFRDQGKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERAG-------NGEEGKGSITAfyTVLVE 293
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 414 GGDFSDPVTSATLGIVQvfwG---LDKKLAQRKHFPSVNWLISYSKYMRAL--DEYYDkhftefvpLRTKAKEIL---QE 485
Cdd:TIGR03496 294 GDDQQDPIADAARAILD---GhivLSRELAEQGHYPAIDILASISRVMPDVvsPEHRQ--------AARRFKQLLsryQE 362
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 1279489789 486 EEDLAEIvqlvGkASLAETDKITLEVAKLIK--DDFLQQN 523
Cdd:TIGR03496 363 NRDLISI----G-AYQAGSDPELDQAIALYPriEAFLQQG 397
|
|
| PRK06936 |
PRK06936 |
EscN/YscN/HrcN family type III secretion system ATPase; |
216-461 |
3.06e-33 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 180762 [Multi-domain] Cd Length: 439 Bit Score: 132.57 E-value: 3.06e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 216 PVTEKLpANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERGNEmsevLRDFPELT 295
Cdd:PRK06936 136 PMSRRL-IETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGRE----VREFIESD 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 296 MEVDGkvesiMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYP 375
Cdd:PRK06936 211 LGEEG-----LRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYP 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 376 AYLGARLASFYERAGrvkclgnPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYS 455
Cdd:PRK06936 286 PSVFAALPRLMERAG-------QSDKGSITALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSAS 358
|
....*.
gi 1279489789 456 KYMRAL 461
Cdd:PRK06936 359 RVMNQI 364
|
|
| PRK07594 |
PRK07594 |
EscN/YscN/HrcN family type III secretion system ATPase; |
7-461 |
1.74e-32 |
|
EscN/YscN/HrcN family type III secretion system ATPase;
Pssm-ID: 136438 [Multi-domain] Cd Length: 433 Bit Score: 130.07 E-value: 1.74e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 7 PKIRDEDKESTFGYVHGVSGPVVTACdMAGAAMYELVRVGHSELVGEIIRLEGDMATIQVYEETSGVSVGDPVLRTGKPL 86
Cdd:PRK07594 11 LKYPPPDGYCRWGRIQDVSATLLNAW-LPGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTIGLHCGQQVMALRRRH 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 87 SVELGPGIMGAIFDGIQRPLSDISsqtqsiyIPrgvnvsalsrDIKWEfipsknlrvgshitggdiygivnenslikhki 166
Cdd:PRK07594 90 QVPVGEALLGRVIDGFGRPLDGRE-------LP----------DVCWK-------------------------------- 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 167 mlpprnrgsvTYIAPPgnydasdvvlelefegvkekfsmvqvwPvrqvrPVTEKLPANHPLLTGQRVLDALFPCVQGGTT 246
Cdd:PRK07594 121 ----------DYDAMP---------------------------P-----PAMVRQPITQPLMTGIRAIDSVATCGEGQRV 158
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 247 AIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERGNEmsevLRDFPELTMEVDGKvesimKRTALVANTSNMPVAAREAS 326
Cdd:PRK07594 159 GIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGRE----VREFIDFTLSEETR-----KRCVIVVATSDRPALERVRA 229
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 327 IYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGrvkcLGNperEGSVSI 406
Cdd:PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG----MGE---KGSITA 302
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 1279489789 407 VGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRAL 461
Cdd:PRK07594 303 FYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVV 357
|
|
| fliI |
PRK07721 |
flagellar protein export ATPase FliI; |
219-492 |
2.52e-32 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181092 [Multi-domain] Cd Length: 438 Bit Score: 129.84 E-value: 2.52e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 219 EKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERGNEmsevLRDFPELTMEV 298
Cdd:PRK07721 134 KRPPIREPMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGRE----VREFIERDLGP 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 299 DGkvesiMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYL 378
Cdd:PRK07721 210 EG-----LKRSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSV 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 379 GARLASFYERAGrvkclgnPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYM 458
Cdd:PRK07721 285 FAILPKLLERTG-------TNASGSITAFYTVLVDGDDMNEPIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSRVM 357
|
250 260 270
....*....|....*....|....*....|....*..
gi 1279489789 459 RALDEYYDKHFTEfvplrtKAKEIL---QEEEDLAEI 492
Cdd:PRK07721 358 NHIVSPEHKEAAN------RFRELLstyQNSEDLINI 388
|
|
| PRK08149 |
PRK08149 |
FliI/YscN family ATPase; |
215-522 |
1.88e-31 |
|
FliI/YscN family ATPase;
Pssm-ID: 236166 [Multi-domain] Cd Length: 428 Bit Score: 127.03 E-value: 1.88e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 215 RPVTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERGNEMSEvlrdFPEl 294
Cdd:PRK08149 123 PSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTE----FVE- 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 295 TMEVDGKVEsimkRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGY 374
Cdd:PRK08149 198 SLRASSRRE----KCVLVYATSDFSSVDRCNAALVATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAAGELPARRGY 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 375 PAYLGARLASFYERAGRVKclgnperEGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISY 454
Cdd:PRK08149 274 PASVFDSLPRLLERPGATL-------AGSITAFYTVLLESEEEPDPIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSV 346
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1279489789 455 SkymRALDEYYDKHFTEfvpLRTKAKEILQEEEDLAEIVQLvGKASL---AETDKITLEVAKLikDDFLQQ 522
Cdd:PRK08149 347 S---RVFGQVTDPKHRQ---LAAAFRKLLTRLEELQLFIDL-GEYRRgenADNDRAMDKRPAL--EAFLKQ 408
|
|
| fliI |
PRK08927 |
flagellar protein export ATPase FliI; |
226-523 |
2.97e-31 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 236351 [Multi-domain] Cd Length: 442 Bit Score: 126.63 E-value: 2.97e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 226 PLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERGNEMSEVLRDfpelTMEVDGkvesi 305
Cdd:PRK08927 141 PLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADADVSVIGLIGERGREVQEFLQD----DLGPEG----- 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 306 MKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASF 385
Cdd:PRK08927 212 LARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRL 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 386 YERAGRvkclgNPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYM-RALDEy 464
Cdd:PRK08927 292 LERAGP-----GPIGEGTITGLFTVLVDGDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMpGCNDP- 365
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1279489789 465 ydkhftEFVPLRTKAKEILQEEEDLAEIVQLvgKASLAETDKITLEVAKLIKD--DFLQQN 523
Cdd:PRK08927 366 ------EENPLVRRARQLMATYADMEELIRL--GAYRAGSDPEVDEAIRLNPAleAFLRQG 418
|
|
| PRK04196 |
PRK04196 |
V-type ATP synthase subunit B; Provisional |
21-526 |
3.57e-28 |
|
V-type ATP synthase subunit B; Provisional
Pssm-ID: 235251 [Multi-domain] Cd Length: 460 Bit Score: 118.00 E-value: 3.57e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 21 VHGVSGPVVTACDMAGAAMYELVRV---GHSELVGEIIRLEGDMATIQVYEETSGVSVGDPVLR-TGKPLSVELGPGIMG 96
Cdd:PRK04196 7 VSEIKGPLLFVEGVEGVAYGEIVEIelpNGEKRRGQVLEVSEDKAVVQVFEGTTGLDLKDTKVRfTGEPLKLPVSEDMLG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 97 AIFDGIQRPLSD----ISSQTQSIyiprgvNVSAL---SRDIKWEFIPsknlrvgshiTGgdIYGIVNENSLIK-HKimL 168
Cdd:PRK04196 87 RIFDGLGRPIDGgpeiIPEKRLDI------NGAPInpvAREYPEEFIQ----------TG--ISAIDGLNTLVRgQK--L 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 169 P-------PRNRgsvtyIAppgnydasdvvlelefegvkekfsmVQVwpVRQVRpvteklpanhplltgqrvldalfpcV 241
Cdd:PRK04196 147 PifsgsglPHNE-----LA-------------------------AQI--ARQAK-------------------------V 169
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 242 QGGTTAipgaFgcgktvisqslskysnsdVIIYVGCGERGNEMSEVLRDFPEltmevdgkvESIMKRTALVANTSNMPVA 321
Cdd:PRK04196 170 LGEEEN----F------------------AVVFAAMGITFEEANFFMEDFEE---------TGALERSVVFLNLADDPAI 218
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 322 AREASIYTGITLSEYFR-DMGYHV-SMMADSTSrWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKclgnpE 399
Cdd:PRK04196 219 ERILTPRMALTAAEYLAfEKGMHVlVILTDMTN-YCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIK-----G 292
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 400 REGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFwgLDKKLAQRKHFPSVNWLISYSKYMralDEYYDKHFTefvplRT 477
Cdd:PRK04196 293 KKGSITQIPILTMPDDDITHPIPDLTGYITegQIV--LSRELHRKGIYPPIDVLPSLSRLM---KDGIGEGKT-----RE 362
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1279489789 478 KAKEILQ-------EEEDLAEIVQLVGKASLAETDKITLEVAKLIKDDFLQQNGYT 526
Cdd:PRK04196 363 DHKDVANqlyaayaRGKDLRELAAIVGEEALSERDRKYLKFADAFEREFVNQGFDE 418
|
|
| NtpB |
COG1156 |
Archaeal/vacuolar-type H+-ATPase subunit B/Vma2 [Energy production and conversion]; Archaeal ... |
21-526 |
4.91e-28 |
|
Archaeal/vacuolar-type H+-ATPase subunit B/Vma2 [Energy production and conversion]; Archaeal/vacuolar-type H+-ATPase subunit B/Vma2 is part of the Pathway/BioSystem: A/V-type ATP synthase
Pssm-ID: 440770 [Multi-domain] Cd Length: 462 Bit Score: 117.55 E-value: 4.91e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 21 VHGVSGPVVTACDMAGAAMYELVRV---GHSELVGEIIRLEGDMATIQVYEETSGVSVGDPVLR-TGKPLSVELGPGIMG 96
Cdd:COG1156 9 ISEIAGPLLFVEGVEGVGYGELVEIelpDGERRRGQVLEVSEDKAVVQVFEGTTGLSLKNTKVRfLGEPLELPVSEDMLG 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 97 AIFDGIQRP---LSDISSQTQsiyipRGVNVSAL---SRDIKWEFIPsknlrvgshiTGgdIYGIVNENSLIK-HKimLP 169
Cdd:COG1156 89 RVFNGLGRPidgGPPIIPEKR-----LDINGSPInpvAREYPREFIQ----------TG--ISAIDGLNTLVRgQK--LP 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 170 -------PRNRgsvtyIAppgnydasdvvlelefegvkekfsmVQVwpVRQVRpvteklpanhplltgqrvldalfpcVQ 242
Cdd:COG1156 150 ifsgsglPHNE-----LA-------------------------AQI--ARQAK-------------------------VR 172
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 243 GGTtaipGAFGcgktvisqslskysnsdvIIYVGCGERGNEMSEVLRDFPEltmevdgkvESIMKRTALVANTSNMPVAA 322
Cdd:COG1156 173 GEE----EKFA------------------VVFAAMGITHDEANFFREEFEE---------TGALDRVVMFLNLADDPAIE 221
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 323 REASIYTGITLSEYFR-DMGYHV-SMMADSTSrWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKclgnpER 400
Cdd:COG1156 222 RIITPRMALTAAEYLAfEKGMHVlVILTDMTN-YCEALREISAAREEVPGRRGYPGYMYSDLASLYERAGRIK-----GR 295
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 401 EGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFwgLDKKLAQRKHFPSVNWLISYSKYM-------------RAL-DEY 464
Cdd:COG1156 296 KGSITQIPILTMPNDDITHPIPDLTGYITegQIV--LSRDLHRKGIYPPIDVLPSLSRLMkdgigegktredhADVaNQL 373
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1279489789 465 YDKHftefvplrTKAKeilqeeeDLAEIVQLVGKASLAETDKITLEVAKLIKDDFLQQNGYT 526
Cdd:COG1156 374 YAAY--------ARGQ-------EVRELAAIVGEEALSETDKKYLKFADAFERRFVNQGFDE 420
|
|
| PRK09099 |
PRK09099 |
type III secretion system ATPase; Provisional |
225-545 |
2.12e-26 |
|
type III secretion system ATPase; Provisional
Pssm-ID: 169656 [Multi-domain] Cd Length: 441 Bit Score: 112.55 E-value: 2.12e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 225 HPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERGNEmsevLRDFPELTMEVDGkves 304
Cdd:PRK09099 145 APLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERGRE----VREFIELILGEDG---- 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 305 iMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLAS 384
Cdd:PRK09099 217 -MARSVVVCATSDRSSIERAKAAYVATAIAEYFRDRGLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPR 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 385 FYERAGRvkclgnpEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALDEy 464
Cdd:PRK09099 296 LLERAGM-------GETGSITALYTVLAEDESGSDPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVMPQVVP- 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 465 yDKHFTEFVPLRtkakEILQEEEDLAEIVQL---------VGKASLAETDKItlevaklikDDFLQQngytPYDRFCPFY 535
Cdd:PRK09099 368 -REHVQAAGRLR----QLLAKHREVETLLQVgeyragsdpVADEAIAKIDAI---------RDFLSQ----RTDEYSDPD 429
|
330
....*....|
gi 1279489789 536 KTVGMLSNMI 545
Cdd:PRK09099 430 ATLAALAELS 439
|
|
| fliI |
PRK08972 |
flagellar protein export ATPase FliI; |
215-458 |
7.33e-26 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181599 [Multi-domain] Cd Length: 444 Bit Score: 110.95 E-value: 7.33e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 215 RPVTEklpanhPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSNSDVIIyVG-CGERGNEMSEvlrdFPE 293
Cdd:PRK08972 140 RPITE------PLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTADVIV-VGlVGERGREVKE----FIE 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 294 LTMEVDGKVESIMkrTALVANTSN-MPVAAREasiyTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADS 372
Cdd:PRK08972 209 EILGEEGRARSVV--VAAPADTSPlMRLKGCE----TATTIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATK 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 373 GYPAYLGARLASFYERAGRvkclGNPeREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLI 452
Cdd:PRK08972 283 GYPPSVFAKLPALVERAGN----GGP-GQGSITAFYTVLTEGDDLQDPIADASRAILDGHIVLSRELADSGHYPAIDIEA 357
|
....*.
gi 1279489789 453 SYSKYM 458
Cdd:PRK08972 358 SISRVM 363
|
|
| fliI |
PRK07960 |
flagellum-specific ATP synthase FliI; |
219-465 |
3.46e-24 |
|
flagellum-specific ATP synthase FliI;
Pssm-ID: 181182 [Multi-domain] Cd Length: 455 Bit Score: 106.02 E-value: 3.46e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 219 EKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERGNEmsevLRDFPELTMEV 298
Cdd:PRK07960 151 QRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGRE----VKDFIENILGA 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 299 DGKVESIMkrTALVANTSNMpVAAREASIYTGItlSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYL 378
Cdd:PRK07960 227 EGRARSVV--IAAPADVSPL-LRMQGAAYATRI--AEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSV 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 379 GARLASFYERAGRVKCLGnpereGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYM 458
Cdd:PRK07960 302 FAKLPALVERAGNGISGG-----GSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAM 376
|
....*....
gi 1279489789 459 RAL--DEYY 465
Cdd:PRK07960 377 TALidEQHY 385
|
|
| fliI |
PRK06002 |
flagellar protein export ATPase FliI; |
225-456 |
6.03e-24 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 235666 [Multi-domain] Cd Length: 450 Bit Score: 105.08 E-value: 6.03e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 225 HPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERGNEmsevLRDFPELTMevdgkVES 304
Cdd:PRK06002 147 TGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGRE----VREFLEDTL-----ADN 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 305 IMKRTALVANTSNMPVAAREASIyTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLAS 384
Cdd:PRK06002 218 LKKAVAVVATSDESPMMRRLAPL-TATAIAEYFRDRGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPR 296
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1279489789 385 FYERAGrvkclgnPEREGSVSIVG--AVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSK 456
Cdd:PRK06002 297 LLERAG-------PGAEGGGSITGifSVLVDGDDHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISR 363
|
|
| F1-ATPase_beta_CD |
cd01133 |
F1 ATP synthase beta subunit, central domain; The F-ATPase is found in bacterial plasma ... |
206-463 |
1.25e-23 |
|
F1 ATP synthase beta subunit, central domain; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The mitochondrial extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic. Alpha and beta subunits form the globular catalytic moiety, a hexameric ring of alternating alpha and beta subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton-translocating domain.
Pssm-ID: 410877 [Multi-domain] Cd Length: 277 Bit Score: 101.14 E-value: 1.25e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 206 VQVWPVRQVRP-VTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSL----SKySNSDVIIYVGCGER 280
Cdd:cd01133 29 KERWPIHREAPeFVELSTEQEILETGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELinniAK-AHGGYSVFAGVGER 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 281 GNEMSEVLRDFpeltmeVDGKVESI--MKRTALVANTSNMPVAAREASIYTGITLSEYFRDM-GYHVSMMADSTSRWAEA 357
Cdd:cd01133 108 TREGNDLYHEM------KESGVINLdgLSKVALVYGQMNEPPGARARVALTGLTMAEYFRDEeGQDVLLFIDNIFRFTQA 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 358 LREISGRLAEMPADSGYPAYLGARLASFYERAGRVKclgnperEGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDK 437
Cdd:cd01133 182 GSEVSALLGRIPSAVGYQPTLATEMGSLQERITSTK-------KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSR 254
|
250 260
....*....|....*....|....*.
gi 1279489789 438 KLAQRKHFPSVNWLISYSkymRALDE 463
Cdd:cd01133 255 GIAELGIYPAVDPLDSTS---RILDP 277
|
|
| fliI |
PRK07196 |
flagellar protein export ATPase FliI; |
213-546 |
2.50e-23 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180875 [Multi-domain] Cd Length: 434 Bit Score: 103.05 E-value: 2.50e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 213 QVRPVtEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERGNEmsevLRDFP 292
Cdd:PRK07196 126 QIHPL-QRRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGRE----VKEFI 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 293 ELTMEVDGkvesiMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADS 372
Cdd:PRK07196 201 EHSLQAAG-----MAKSVVVAAPADESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATK 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 373 GYPAYLGARLASFYERAgrvkclGNPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLI 452
Cdd:PRK07196 276 GYPPSAFSIIPRLAESA------GNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQ 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 453 SYSKYMRALDEyydkhfTEFVPLRTKAKEILQEEEDLAEIVQLVGKASLAE--TDKITLEVAKLikDDFLQQNGYTPydr 530
Cdd:PRK07196 350 SISRCMSQVIG------SQQAKAASLLKQCYADYMAIKPLIPLGGYVAGADpmADQAVHYYPAI--TQFLRQEVGHP--- 418
|
330
....*....|....*.
gi 1279489789 531 fCPFYKTVGMLSNMIS 546
Cdd:PRK07196 419 -ALFSASVEQLTGMFP 433
|
|
| fliI |
PRK05688 |
flagellar protein export ATPase FliI; |
222-458 |
3.80e-23 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 168181 [Multi-domain] Cd Length: 451 Bit Score: 102.89 E-value: 3.80e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 222 PANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERGNEMSEvlrdFPELTMEVDGk 301
Cdd:PRK05688 147 PISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVKE----FIEHILGEEG- 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 302 vesiMKRTALVANTSN-MPVAAREASIYTgITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGA 380
Cdd:PRK05688 222 ----LKRSVVVASPADdAPLMRLRAAMYC-TRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFA 296
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1279489789 381 RLASFYERAgrvkclGNPER-EGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYM 458
Cdd:PRK05688 297 KLPKLVERA------GNAEPgGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVM 369
|
|
| V_A-ATPase_B |
cd01135 |
V/A-type ATP synthase subunit B; V/A-type ATP synthase (non-catalytic) subunit B. These ... |
262-459 |
2.42e-21 |
|
V/A-type ATP synthase subunit B; V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. Vacuolar (V-type) ATPases play major roles in endomembrane and plasma membrane proton transport in eukaryotes. They are found in multiple intracellular membranes including vacuoles, endosomes, lysosomes, Golgi-derived vesicles, secretory vesicles, as well as the plasma membrane. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Pssm-ID: 410879 [Multi-domain] Cd Length: 282 Bit Score: 94.60 E-value: 2.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 262 SLSKYSNSDVIIYVGCGERGNEMSEVLRDFPELTMevdgkvesiMKRTALVANTSNMPVAAReasIYT---GITLSEYFR 338
Cdd:cd01135 94 GVVGSEENFAIVFAAMGVTMEEARFFKDDFEETGA---------LERVVLFLNLANDPTIER---IITprmALTTAEYLA 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 339 -DMGYHV-SMMADSTSrWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKclgnpEREGSVSIVGAVSPPGGD 416
Cdd:cd01135 162 yEKGKHVlVILTDMTN-YAEALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVE-----GRKGSITQIPILTMPNDD 235
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1279489789 417 FSDPVTSATLGIV--QVFwgLDKKLAQRKHFPSVNWLISYSKYMR 459
Cdd:cd01135 236 ITHPIPDLTGYITegQIY--LDRDLHNKGIYPPIDVLPSLSRLMK 278
|
|
| atpB |
CHL00060 |
ATP synthase CF1 beta subunit |
229-522 |
3.57e-20 |
|
ATP synthase CF1 beta subunit
Pssm-ID: 214349 [Multi-domain] Cd Length: 494 Bit Score: 93.95 E-value: 3.57e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 229 TGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSL----SKySNSDVIIYVGCGER---GN----EMSE----VLRDFPE 293
Cdd:CHL00060 147 TGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELinniAK-AHGGVSVFGGVGERtreGNdlymEMKEsgviNEQNIAE 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 294 ltmevdGKVesimkrtALVANTSNMPVAAREASIYTGITLSEYFRDMGYH-VSMMADSTSRWAEALREISGRLAEMPADS 372
Cdd:CHL00060 226 ------SKV-------ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQdVLLFIDNIFRFVQAGSEVSALLGRMPSAV 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 373 GYPAYLGARLASFYERAGRVKclgnperEGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLI 452
Cdd:CHL00060 293 GYQPTLSTEMGSLQERITSTK-------EGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLD 365
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1279489789 453 SYSKYMRAL---DEYYDkhftefvpLRTKAKEILQEEEDLAEIVQLVGKASLAETDKITLEVAKLIkDDFLQQ 522
Cdd:CHL00060 366 STSTMLQPRivgEEHYE--------TAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKI-ERFLSQ 429
|
|
| fliI |
PRK06793 |
flagellar protein export ATPase FliI; |
143-458 |
5.86e-19 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 180696 [Multi-domain] Cd Length: 432 Bit Score: 89.65 E-value: 5.86e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 143 VGSHITGGDIYGIVNENSlikhkiMLPPRNRG-------SVTYIA-----PPGNY------DASDVVLELEFEGVKEKFS 204
Cdd:PRK06793 48 VGEHNVLCEVIAIEKENN------MLLPFEQTekvcygdSVTLIAedvviPRGNHllgkvlSANGEVLNEEAENIPLQKI 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 205 MVQVWPVRQVrpvtEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERGNEM 284
Cdd:PRK06793 122 KLDAPPIHAF----EREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREV 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 285 SEVLRDfpELTmevdgkvESIMKRTALVANTSNMP--VAAREASIYTGItlSEYFRDMGYHVSMMADSTSRWAEALREIS 362
Cdd:PRK06793 198 KDFIRK--ELG-------EEGMRKSVVVVATSDEShlMQLRAAKLATSI--AEYFRDQGNNVLLMMDSVTRFADARRSVD 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 363 GRLAEMPAdSGYPAYLGARLASFYERAGRVKclgnperEGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQR 442
Cdd:PRK06793 267 IAVKELPI-GGKTLLMESYMKKLLERSGKTQ-------KGSITGIYTVLVDGDDLNGPVPDLARGILDGHIVLKRELATL 338
|
330
....*....|....*.
gi 1279489789 443 KHFPSVNWLISYSKYM 458
Cdd:PRK06793 339 SHYPAISVLDSVSRIM 354
|
|
| fliI |
PRK08472 |
flagellar protein export ATPase FliI; |
224-545 |
1.75e-18 |
|
flagellar protein export ATPase FliI;
Pssm-ID: 181439 [Multi-domain] Cd Length: 434 Bit Score: 88.20 E-value: 1.75e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 224 NHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERGNEMSEvlrdFPELTMevDGKVE 303
Cdd:PRK08472 138 DEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPE----FIEKNL--GGDLE 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 304 SimkrTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLA 383
Cdd:PRK08472 212 N----TVIVVATSDDSPLMRKYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLP 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 384 SFYERAgrvkclGNPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRalDE 463
Cdd:PRK08472 288 QLMERA------GKEEGKGSITAFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMN--DI 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 464 YYDKHFTEFVPLRtKAKEILQEEEDLAEIvqlvgKASLAETDKiTLEVA---KLIKDDFLQQNGYTPYdrfcPFYKTVGM 540
Cdd:PRK08472 360 ISPEHKLAARKFK-RLYSLLKENEVLIRI-----GAYQKGNDK-ELDEAiskKEFMEQFLKQNPNELF----PFEQTFEQ 428
|
....*
gi 1279489789 541 LSNMI 545
Cdd:PRK08472 429 LEEIL 433
|
|
| V-ATPase_V1_B |
TIGR01040 |
V-type (H+)-ATPase V1, B subunit; This models eukaryotic vacuolar (H+)-ATPase that is ... |
306-525 |
2.22e-18 |
|
V-type (H+)-ATPase V1, B subunit; This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273410 [Multi-domain] Cd Length: 466 Bit Score: 88.24 E-value: 2.22e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 306 MKRTALVANTSNMPVAAREASIYTGITLSEYFR-DMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLAS 384
Cdd:TIGR01040 210 MERVCLFLNLANDPTIERIITPRLALTTAEYLAyQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLAT 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 385 FYERAGRVKclgnpEREGSVSIVGAVSPPGGDFSDPVTSATLGIV--QVFwgLDKKLAQRKHFPSVNWLISYSKYMR-AL 461
Cdd:TIGR01040 290 IYERAGRVE-----GRNGSITQIPILTMPNDDITHPIPDLTGYITegQIY--VDRQLHNRQIYPPINVLPSLSRLMKsAI 362
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1279489789 462 DEYYDKHFTEFVPLRTKAKEILQeeEDLAEIVQLVGKASLAETDKITLEVAKLIKDDFLQQNGY 525
Cdd:TIGR01040 363 GEGMTRKDHSDVSNQLYACYAIG--KDVQAMKAVVGEEALSSEDLLYLEFLDKFEKNFIAQGPY 424
|
|
| PRK05922 |
PRK05922 |
type III secretion system ATPase; Validated |
216-545 |
1.13e-17 |
|
type III secretion system ATPase; Validated
Pssm-ID: 102061 [Multi-domain] Cd Length: 434 Bit Score: 85.73 E-value: 1.13e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 216 PVTEKLPanhpllTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERGNEMSEVLRDFPELT 295
Cdd:PRK05922 136 PIQEIFP------TGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGERGREVREYIEQHKEGL 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 296 MEvdgkvesimKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYP 375
Cdd:PRK05922 210 AA---------QRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVLFIMDSLSRWIAALQEVALARGETLSAHHYA 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 376 AYLGARLASFYERAgrvkclGNPEReGSVSIVGAV--SPPGGD-FSDPVTSATLGivQVFWGldkklAQRKHF--PSVNW 450
Cdd:PRK05922 281 ASVFHHVSEFTERA------GNNDK-GSITALYAIlhYPNHPDiFTDYLKSLLDG--HFFLT-----PQGKALasPPIDI 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 451 LISYSKYMRALDeyYDKHFTEFVPLRTkakeILQEEEDLAEIVQLvgKASLAETDKITLEVAKLIKD--DFLQQngytPY 528
Cdd:PRK05922 347 LTSLSRSARQLA--LPHHYAAAEELRS----LLKAYHEALDIIQL--GAYVPGQDAHLDRAVKLLPSikQFLSQ----PL 414
|
330
....*....|....*..
gi 1279489789 529 DRFCPFYKTVGMLSNMI 545
Cdd:PRK05922 415 SSYCALHNTLKQLEALL 431
|
|
| PRK13343 |
PRK13343 |
F0F1 ATP synthase subunit alpha; Provisional |
34-402 |
1.90e-15 |
|
F0F1 ATP synthase subunit alpha; Provisional
Pssm-ID: 183987 [Multi-domain] Cd Length: 502 Bit Score: 79.19 E-value: 1.90e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 34 MAGAAMYELVRV--GHSELVGEiirLEGDMATIQVYEETSGVSVGDPVLRTGKPLSVELGPGIMGAIFDGIQRPLSDiss 111
Cdd:PRK13343 44 LPDAALDELLRFegGSRGFAFN---LEEELVGAVLLDDTADILAGTEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDG--- 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 112 qtqsiyiprgvnvsalsrdikwefipsknlrvgshitGGDiygivnenslikhkimLPPRNRGSVTYIAPPgnydasdvV 191
Cdd:PRK13343 118 -------------------------------------GGP----------------LQATARRPLERPAPA--------I 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 192 LElefegvkekfsmvqvwpvRQvrPVTEklpanhPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKT------VISQSlsk 265
Cdd:PRK13343 137 IE------------------RD--FVTE------PLQTGIKVVDALIPIGRGQRELIIGDRQTGKTaiaidaIINQK--- 187
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 266 ysNSDVI-IYVGCGERGNEMSEVLRdfpelTMEVDGKvesiMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHV 344
Cdd:PRK13343 188 --DSDVIcVYVAIGQKASAVARVIE-----TLREHGA----LEYTTVVVAEASDPPGLQYLAPFAGCAIAEYFRDQGQDA 256
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1279489789 345 SMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLasfYERAGRVkclgNPEREG 402
Cdd:PRK13343 257 LIVYDDLSKHAAAYRELSLLLRRPPGREAYPGdifYLHSRL---LERAAKL----SPELGG 310
|
|
| F1-ATPase_alpha_CD |
cd01132 |
F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma ... |
222-456 |
2.09e-15 |
|
F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The mitochondrial extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic. Alpha and beta subunits form the globular catalytic moiety, a hexameric ring of alternating alpha and beta subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton-translocating domain.
Pssm-ID: 410876 [Multi-domain] Cd Length: 274 Bit Score: 76.83 E-value: 2.09e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 222 PANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKT------VISQSlskysNSDVI-IYVGCGERGNEMSEVLRdfpel 294
Cdd:cd01132 48 SVNEPLQTGIKAIDSLIPIGRGQRELIIGDRQTGKTaiaidtIINQK-----GKKVYcIYVAIGQKRSTVAQIVK----- 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 295 TMEVDGKvesiMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGY 374
Cdd:cd01132 118 TLEEHGA----MEYTIVVAATASDPAPLQYLAPYAGCAMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAY 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 375 PA---YLGARLasfYERAGRvkcLGNPEREGSVSIVGAVSPPGGDFSD--P--VTSATLGivQVFwgLDKKLAQRKHFPS 447
Cdd:cd01132 194 PGdvfYLHSRL---LERAAK---LSDELGGGSLTALPIIETQAGDVSAyiPtnVISITDG--QIF--LESELFNKGIRPA 263
|
....*....
gi 1279489789 448 VNWLISYSK 456
Cdd:cd01132 264 INVGLSVSR 272
|
|
| ATP-synt_ab_N |
pfam02874 |
ATP synthase alpha/beta family, beta-barrel domain; This family includes the ATP synthase ... |
21-83 |
2.63e-14 |
|
ATP synthase alpha/beta family, beta-barrel domain; This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.
Pssm-ID: 427029 [Multi-domain] Cd Length: 69 Bit Score: 67.96 E-value: 2.63e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1279489789 21 VHGVSGPVVTACDMAGAA--MYELVRVGHSE----LVGEIIRLEGDMATIQVYEETSGVSVGDPVLRTG 83
Cdd:pfam02874 1 IVQVIGPVVDVEFGIGRLpgLLNALEVELVEfgslVLGEVLNLGGDKVRVQVFGGTSGLSRGDEVKRTG 69
|
|
| PTZ00185 |
PTZ00185 |
ATPase alpha subunit; Provisional |
217-456 |
3.52e-13 |
|
ATPase alpha subunit; Provisional
Pssm-ID: 140212 [Multi-domain] Cd Length: 574 Bit Score: 72.38 E-value: 3.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 217 VTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVIS------------QSLSKysNSDVIIYVGCGERGNEM 284
Cdd:PTZ00185 163 IVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVGDRQTGKTSIAvstiinqvrinqQILSK--NAVISIYVSIGQRCSNV 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 285 SEVLRDFpeltmevdgKVESIMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGR 364
Cdd:PTZ00185 241 ARIHRLL---------RSYGALRYTTVMAATAAEPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLL 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 365 LAEMPADSGYPA---YLGARLasfYERAGRvkcLGNPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQ 441
Cdd:PTZ00185 312 LRRPPGREAYPGdvfYLHSRL---LERAAM---LSPGKGGGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFT 385
|
250
....*....|....*
gi 1279489789 442 RKHFPSVNWLISYSK 456
Cdd:PTZ00185 386 GGQRPAVNIGLSVSR 400
|
|
| atpA |
CHL00059 |
ATP synthase CF1 alpha subunit |
215-432 |
1.59e-12 |
|
ATP synthase CF1 alpha subunit
Pssm-ID: 176999 [Multi-domain] Cd Length: 485 Bit Score: 69.99 E-value: 1.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 215 RPVTEklpanhPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVIS-QSLSKYSNSDVI-IYVGCGERGNEMSEVLRDFP 292
Cdd:CHL00059 119 RSVYE------PLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVAtDTILNQKGQNVIcVYVAIGQKASSVAQVVTTLQ 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 293 EltmevdgkvESIMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADS 372
Cdd:CHL00059 193 E---------RGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRGRHTLIIYDDLSKQAQAYRQMSLLLRRPPGRE 263
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1279489789 373 GYPA---YLGARLasfYERAGRvkcLGNPEREGSVSIVGAVSPPGGDFSD--P--VTSATLGivQVF 432
Cdd:CHL00059 264 AYPGdvfYLHSRL---LERAAK---LSSQLGEGSMTALPIVETQAGDVSAyiPtnVISITDG--QIF 322
|
|
| ATP-synt_F1_V1_A1_AB_FliI_N |
cd01426 |
ATP synthase, alpha/beta subunits of F1/V1/A1 complex, flagellum-specific ATPase FliI, ... |
19-84 |
4.92e-12 |
|
ATP synthase, alpha/beta subunits of F1/V1/A1 complex, flagellum-specific ATPase FliI, N-terminal domain; The alpha and beta (or A and B) subunits are primarily found in the F1, V1, and A1 complexes of the F-, V- and A-type family of ATPases with rotary motors. These ion-transporting rotary ATPases are composed of two linked multi-subunit complexes: the F1, V1, or A1 complex which contains three copies each of the alpha and beta subunits that form the soluble catalytic core involved in ATP synthesis/hydrolysis, and the Fo, Vo, or Ao complex which forms the membrane-embedded proton pore. The F-ATP synthases (also called FoF1-ATPases) are found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts, or in the plasma membranes of bacteria. F-ATPases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. The A-ATP synthases (AoA1-ATPases), a different class of proton-translocating ATP synthases, are found in archaea and function like F-ATP synthases. Structurally, however, the A-ATP synthases are more closely related to the V-ATP synthases (vacuolar VoV1-ATPases), which are a proton-translocating ATPase responsible for acidification of eukaryotic intracellular compartments and for ATP synthesis in archaea and some eubacteria. Collectively, F-, V-, and A-type synthases can function in both ATP synthesis and hydrolysis modes. This family also includes the flagellum-specific ATPase/type III secretory pathway virulence-related protein, which shows extensive similarity to the alpha and beta subunits of F1-ATP synthase.
Pssm-ID: 349738 [Multi-domain] Cd Length: 73 Bit Score: 61.56 E-value: 4.92e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1279489789 19 GYVHGVSGPVVTACDMAGAAMYELVRVGHS------ELVGEIIRLEGDMATIQVYEETSGVSVGDPVLRTGK 84
Cdd:cd01426 2 GRVIRVNGPLVEAELEGEVAIGEVCEIERGdgnnetVLKAEVIGFRGDRAILQLFESTRGLSRGALVEPTGR 73
|
|
| PRK02118 |
PRK02118 |
V-type ATP synthase subunit B; Provisional |
36-425 |
2.41e-11 |
|
V-type ATP synthase subunit B; Provisional
Pssm-ID: 179373 [Multi-domain] Cd Length: 436 Bit Score: 66.21 E-value: 2.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 36 GAAMYELVRV--GHSELVGEIIRLEGDMATIQVYEETSGVSVGDPVLRTGKPLSVELGPGIMGAIFDGIQRPLsDISSQT 113
Cdd:PRK02118 22 GVGYGELATVerKDGSSLAQVIRLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYSESLLGRRFNGSGKPI-DGGPEL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 114 QSIYIP-RGVNVSALSRdikweFIPSKNLRVGshITGGDIYgivneNSLIKhkimlpprnrgsvtyiappgnydasdvvl 192
Cdd:PRK02118 101 EGEPIEiGGPSVNPVKR-----IVPREMIRTG--IPMIDVF-----NTLVE----------------------------- 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 193 elefegvkekfsmvqvwpvrqvrpvTEKLPanhplltgqrvldaLFpcvqggttAIPGafgcgkTVISQSLSKYSN---S 269
Cdd:PRK02118 140 -------------------------SQKIP--------------IF--------SVSG------EPYNALLARIALqaeA 166
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 270 DVIIYVGCGERGNEMSEVLRDFPELtmevdgkveSIMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYH--VSMM 347
Cdd:PRK02118 167 DIIILGGMGLTFDDYLFFKDTFENA---------GALDRTVMFIHTASDPPVECLLVPDMALAVAEKFALEGKKkvLVLL 237
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1279489789 348 ADSTSrWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVkclgnpEREGSVSIVGAVSPPGGDFSDPVTSAT 425
Cdd:PRK02118 238 TDMTN-FADALKEISITMDQIPSNRGYPGSLYSDLASRYEKAVDF------EDGGSITIIAVTTMPGDDVTHPVPDNT 308
|
|
| PRK09281 |
PRK09281 |
F0F1 ATP synthase subunit alpha; Validated |
212-392 |
1.41e-08 |
|
F0F1 ATP synthase subunit alpha; Validated
Pssm-ID: 236448 [Multi-domain] Cd Length: 502 Bit Score: 57.38 E-value: 1.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 212 RQvrPVTEklpanhPLLTGQRVLDALFPCVQG-----------GTTAIpgafgCGKTVISQSlskysNSDVI-IYVGCGE 279
Cdd:PRK09281 139 RK--SVHE------PLQTGIKAIDAMIPIGRGqreliigdrqtGKTAI-----AIDTIINQK-----GKDVIcIYVAIGQ 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279489789 280 RGNEMSEVLRdfpelTMEVDGKvesiMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALR 359
Cdd:PRK09281 201 KASTVAQVVR-----KLEEHGA----MEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSKQAVAYR 271
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1279489789 360 EIS-------GRLAempadsgYPA---YLGARLasfYERAGRV 392
Cdd:PRK09281 272 QLSlllrrppGREA-------YPGdvfYLHSRL---LERAAKL 304
|
|
| ATP-synt_F1_V1_A1_AB_FliI_C |
cd01429 |
ATP synthase, alpha/beta subunits of F1/V1/A1 complex, flagellum-specific ATPase FliI, ... |
480-541 |
5.13e-06 |
|
ATP synthase, alpha/beta subunits of F1/V1/A1 complex, flagellum-specific ATPase FliI, C-terminal domain; The alpha and beta (also called A and B) subunits are primarily found in the F1, V1, and A1 complexes of F-, V- and A-type family of ATPases with rotary motors. These ion-transporting rotary ATPases are composed of two linked multi-subunit complexes: the F1, V1, and A1 complexes contain three copies each of the alpha and beta subunits that form the soluble catalytic core, which is involved in ATP synthesis/hydrolysis, and the Fo, Vo, or Ao complex that forms the membrane-embedded proton pore. The F-ATP synthases (also called FoF1-ATPases) are found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts, or in the plasma membranes of bacteria. F-ATPases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. The A-ATP synthases (AoA1-ATPases), a different class of proton-translocating ATP synthases, are found in archaea and function like F-ATP synthases. Structurally, however, the A-ATP synthases are more closely related to the V-ATP synthases (vacuolar VoV1-ATPases), which are a proton-translocating ATPase responsible for acidification of eukaryotic intracellular compartments and for ATP synthesis in archaea and some eubacteria. Collectively, F-, V-, and A-type synthases can function in both ATP synthesis and hydrolysis modes. This family also includes the flagellum-specific ATPase/type III secretory pathway virulence-related protein, which shows extensive similarity to the alpha and beta subunits of F1-ATP synthase.
Pssm-ID: 349744 [Multi-domain] Cd Length: 70 Bit Score: 44.36 E-value: 5.13e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1279489789 480 KEILQEEEDLAEIVQLVGKASLAETDKITLEVAKLIKdDFLQQNGYTPYdrfcPFYKTVGML 541
Cdd:cd01429 9 KAILAQYRELRDIVAIVGDDALSEADKKTLSRGRRLE-EFLQQGQFEPE----TIEDTLEKL 65
|
|
| ATP-synt_V_A-type_beta_N |
cd18118 |
V/A-type ATP synthase beta (B) subunit, N-terminal domain; The beta (B) subunit of the V1/A1 ... |
21-84 |
1.47e-05 |
|
V/A-type ATP synthase beta (B) subunit, N-terminal domain; The beta (B) subunit of the V1/A1 complexes of V/A-type ATP synthases, N-terminal domain. The V- and A-type family of ATPases are composed of two linked multi-subunit complexes: the V1 or A1 complex which contains three copies each of the alpha and beta subunits that form the soluble catalytic core, that is involved in ATP synthesis/hydrolysis, and the Vo or Ao complex which forms the membrane-embedded proton pore. The A-ATP synthase (AoA1-ATPase) is found in archaea and functions like F-ATP synthase. Structurally, however, the A-ATP synthase is more closely related to the V-ATP synthase (vacuolar VoV1-ATPase), which is a proton-translocating ATPase responsible for acidification of eukaryotic intracellular compartments and for ATP synthesis in archaea and some eubacteria. Collectively, the V- and A-type synthases can function in both ATP synthesis and hydrolysis modes. This subfamily consists of the non-catalytic beta subunit.
Pssm-ID: 349742 [Multi-domain] Cd Length: 72 Bit Score: 43.19 E-value: 1.47e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1279489789 21 VHGVSGPVVTACDMAGAAMYELVRV----GHSELvGEIIRLEGDMATIQVYEETSGVSVGDPVLR-TGK 84
Cdd:cd18118 5 VSEINGPLVIVEGVKGVKYGEIVEItlpdGEVRR-GQVLEVSGDKAVVQVFEGTSGLDLKGTKVRfTGE 72
|
|
| |
