NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1335348683|ref|NP_001347069|]
View 

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2 isoform 2 [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
NDUFA12 super family cl47913
NADH ubiquinone oxidoreductase subunit NDUFA12; This family contains the 17.2 kD subunit of ...
 23-84 9.84e-11

NADH ubiquinone oxidoreductase subunit NDUFA12; This family contains the 17.2 kD subunit of complex I (NDUFA12) and its homologs. The family also contains a second related eukaryotic protein of unknown function,.


The actual alignment was detected with superfamily member pfam05071:

Pssm-ID: 461542  Cd Length: 96  Bit Score: 53.37  E-value: 9.84e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1335348683  23 VGTDHLGNKYYyvaEYKNwrGQTIREKRIVEaanRKEVDYEAGDIPTEWEAWIRRTRKTPPT 84
Cdd:pfam05071   3 VGEDEFGNKYY---ENKD--EELPGRRRWVI---YNDGDYDASQVPPEWHGWLHYITDDPPT 56
 
Name Accession Description Interval E-value
NDUFA12 pfam05071
NADH ubiquinone oxidoreductase subunit NDUFA12; This family contains the 17.2 kD subunit of ...
 23-84 9.84e-11

NADH ubiquinone oxidoreductase subunit NDUFA12; This family contains the 17.2 kD subunit of complex I (NDUFA12) and its homologs. The family also contains a second related eukaryotic protein of unknown function,.


Pssm-ID: 461542  Cd Length: 96  Bit Score: 53.37  E-value: 9.84e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1335348683  23 VGTDHLGNKYYyvaEYKNwrGQTIREKRIVEaanRKEVDYEAGDIPTEWEAWIRRTRKTPPT 84
Cdd:pfam05071   3 VGEDEFGNKYY---ENKD--EELPGRRRWVI---YNDGDYDASQVPPEWHGWLHYITDDPPT 56
PLN03095 PLN03095
NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional
 23-92 4.70e-07

NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional


Pssm-ID: 215571  Cd Length: 115  Bit Score: 44.49  E-value: 4.70e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1335348683  23 VGTDHLGNKYYYVAEYKNWRgqtireKRIVEAANRKevDYEAGDIPTEWEAWIRRTRKTPPTMESLSLKI 92
Cdd:PLN03095   13 VGEDEFGNKYYENPSYQSGR------HRWVEYADKD--DYNASNIPPEWHGWLHYVNDEPGELEDRTAPR 74
 
Name Accession Description Interval E-value
NDUFA12 pfam05071
NADH ubiquinone oxidoreductase subunit NDUFA12; This family contains the 17.2 kD subunit of ...
 23-84 9.84e-11

NADH ubiquinone oxidoreductase subunit NDUFA12; This family contains the 17.2 kD subunit of complex I (NDUFA12) and its homologs. The family also contains a second related eukaryotic protein of unknown function,.


Pssm-ID: 461542  Cd Length: 96  Bit Score: 53.37  E-value: 9.84e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1335348683  23 VGTDHLGNKYYyvaEYKNwrGQTIREKRIVEaanRKEVDYEAGDIPTEWEAWIRRTRKTPPT 84
Cdd:pfam05071   3 VGEDEFGNKYY---ENKD--EELPGRRRWVI---YNDGDYDASQVPPEWHGWLHYITDDPPT 56
PLN03095 PLN03095
NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional
 23-92 4.70e-07

NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional


Pssm-ID: 215571  Cd Length: 115  Bit Score: 44.49  E-value: 4.70e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1335348683  23 VGTDHLGNKYYYVAEYKNWRgqtireKRIVEAANRKevDYEAGDIPTEWEAWIRRTRKTPPTMESLSLKI 92
Cdd:PLN03095   13 VGEDEFGNKYYENPSYQSGR------HRWVEYADKD--DYNASNIPPEWHGWLHYVNDEPGELEDRTAPR 74
PRK08183 PRK08183
NADH:ubiquinone oxidoreductase subunit NDUFA12;
21-88 7.61e-06

NADH:ubiquinone oxidoreductase subunit NDUFA12;


Pssm-ID: 236176 [Multi-domain]  Cd Length: 133  Bit Score: 41.51  E-value: 7.61e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1335348683  21 EHVGTDHLGNKYYyvaEYKNWRGQTIREKRIV----EAanrkevdyEAGDIPTEWEAWIRRTRKTPPTMESL 88
Cdd:PRK08183   27 ERVGEDEFGNVYY---RTKGGKPSDGRERRWViyngYA--------EASRIPPEWHGWLHHTVDVPPTKEPY 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH