|
Name |
Accession |
Description |
Interval |
E-value |
| GOLGA2L5 |
pfam15070 |
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ... |
342-866 |
0e+00 |
|
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.
Pssm-ID: 464485 [Multi-domain] Cd Length: 521 Bit Score: 709.52 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 342 QLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPP--AGP 419
Cdd:pfam15070 1 QLMESLKQLQTERDQYAENLKEEGAVWQQKMQQLSEQVRTLREEKERSVSQVQELETSLAELKNQAAVPPAEEEQppAGP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 420 SEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRA 499
Cdd:pfam15070 81 SEEEQRLQEEAEQLQKELEALAGQLQAQVQDNEQLSRLNQEQEQRLLELERAAERWGEQAEDRKQILEDMQSDRATISRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 500 LSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSH 579
Cdd:pfam15070 161 LSQNRELKEQLAELQNGFVKLTNENMELTSALQSEQHVKKELAKKLGQLQEELGELKETLELKSQEAQSLQEQRDQYLAH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 580 LQQYAAAYQqhlaayeQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQENQQLQAQLSL 659
Cdd:pfam15070 241 LQQYVAAYQ-------QLASEKEELHKQYLLQTQLMDRLQHEEVQGKVAAEMARQELQETQERLEALTQQNQQLQAQLSL 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 660 LVLPGE-GDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHLAAPVQSKLE 738
Cdd:pfam15070 314 LANPGEgDGLESEEEEEEAPRPSLSIPEDFESREAMVAFFNSALAQAEEERAELRRQLKEQKRRCRRLAQQAAPAQEEPE 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 739 KEAVVPRNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKAR 818
Cdd:pfam15070 394 HEAHAPGTGGDSVPVEVHQALQVAMEKLQSRFTELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAILKQR 473
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1676440368 819 HLEKEEYISRLAQDKEEMKVKLLELQELVLRLVNERNEWQGKFLAVSQ 866
Cdd:pfam15070 474 HREKEEYISRLAQDKEEMKVKLLELQELVLRLVGERNEWYGKYLAAAQ 521
|
|
| GM130_C |
pfam19046 |
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 ... |
911-956 |
1.22e-26 |
|
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 protein that is bound by the GRASP65 PDZ domain pfam04495.
Pssm-ID: 465957 Cd Length: 46 Bit Score: 102.85 E-value: 1.22e-26
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1676440368 911 APHENPTAQQIMQLLREIQNPRERPGLGSNPCIPFFYRADENDEVK 956
Cdd:pfam19046 1 SPPENPTAQQIMQLLPEIQNPQEHPGLGSNPCIPFFYRADENDEVK 46
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
226-552 |
7.64e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.88 E-value: 7.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 226 VGELERTLSTVSTQQKQADRYnKDLTKERDALKLELYKNS-----KSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQ 300
Cdd:TIGR02168 195 LNELERQLKSLERQAEKAERY-KELKAELRELELALLVLRleelrEELEELQEELKEAEEELEELTAELQELEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 301 -KKLEMSELLLQQ----FSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLkgesAMWQQRVQQM 375
Cdd:TIGR02168 274 lEVSELEEEIEELqkelYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL----AELEEKLEEL 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 376 AEQVHTLKEEKEHRERQVQELETSLAALRSQMeePPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESL- 454
Cdd:TIGR02168 350 KEELESLEAELEELEAELEELESRLEELEEQL--ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELl 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 455 ----SHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSA 530
Cdd:TIGR02168 428 kkleEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG 507
|
330 340
....*....|....*....|..
gi 1676440368 531 LQSEQHVKKELARKLGELQERL 552
Cdd:TIGR02168 508 VKALLKNQSGLSGILGVLSELI 529
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
142-649 |
5.53e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.06 E-value: 5.53e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 142 ELEKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHiqtigilvsekAELQTALAHTQQAARQKAGESEDLASRLQS 221
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLEL-----------EELELELEEAQAEEYELLAELARLEQDIAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 222 SRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQK 301
Cdd:COG1196 307 LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 302 KLEmsELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKgESAMWQQRVQQMAEQVHT 381
Cdd:COG1196 387 ELL--EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE-EAAEEEAELEEEEEALLE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 382 LKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQ 461
Cdd:COG1196 464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAA 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 462 EGRLL---------ELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRE-------LKEQLAELQNGFVRLTNENM 525
Cdd:COG1196 544 LAAALqnivveddeVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAigaavdlVASDLREADARYYVLGDTLL 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 526 EITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIH 605
Cdd:COG1196 624 GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE 703
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 1676440368 606 KQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQE 649
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEEL 747
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
112-645 |
9.14e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.21 E-value: 9.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 112 LRQLSQQLNGLVSESTSYINGEGLTSSNMKELEKQqnqdtLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQtigiLVSEK 191
Cdd:COG1196 269 LEELRLELEELELELEEAQAEEYELLAELARLEQD-----IARLEERRRELEERLEELEEELAELEEELEE----LEEEL 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 192 AELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDL 271
Cdd:COG1196 340 EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 272 RQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGgnEQLQHAMEERAQLETHVSQLMESLKQLQ 351
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL--EEAALLEAALAELLEELAEAAARLLLLL 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 352 VERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVqeLETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVE 431
Cdd:COG1196 498 EAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAA--LEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAT 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 432 QLhkelerltgQLRAQVQDNESLSHLNREQEGRLLELEREAQRWseqAEERKQILESMQSDRTTISRALSQNRELKEQLA 511
Cdd:COG1196 576 FL---------PLDKIRARAALAAALARGAIGAAVDLVASDLRE---ADARYYVLGDTLLGRTLVAARLEAALRRAVTLA 643
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 512 ElqnGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHL 591
Cdd:COG1196 644 G---RLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEE 720
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 1676440368 592 AAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKA 645
Cdd:COG1196 721 LEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLER 774
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
269-567 |
1.04e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.86 E-value: 1.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 269 EDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAggNEQLQHAMEERAQLETHVSQLMESLK 348
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL--RKDLARLEAEVEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 349 QLQVERDQYAENLKGESAMWQQRVQQMAEqvhtLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAgpSEAEEQLQG 428
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEE----LEAQIEQLKEELKALREALDELRAELTLLNEEAANL--RERLESLER 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 429 EVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQ----AEERKQILESMQSDRTTISRALSQNR 504
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNEraslEEALALLRSELEELSEELRELESKRS 911
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1676440368 505 ELKEQLAELQNgfvRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQ 567
Cdd:TIGR02168 912 ELRRELEELRE---KLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEAR 971
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
376-649 |
1.15e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.36 E-value: 1.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 376 AEQVHTLKEEKEHRERQVQELEtsLAALRSQMEEPPPPEPPAgpSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLS 455
Cdd:COG1196 212 AERYRELKEELKELEAELLLLK--LRELEAELEELEAELEEL--EAELEELEAELAELEAELEELRLELEELELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 456 HLNREQEGRLLELEREAQRwseQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQngfvrltNENMEITSALQSEQ 535
Cdd:COG1196 288 AEEYELLAELARLEQDIAR---LEERRRELEERLEELEEELAELEEELEELEEELEELE-------EELEEAEEELEEAE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 536 HVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLM 615
Cdd:COG1196 358 AELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
250 260 270
....*....|....*....|....*....|....
gi 1676440368 616 DQLQHEEVQGKMAAELARQELQEAQERLKATSQE 649
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
110-643 |
2.67e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 2.67e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 110 ESLRQLSQQLNGLVSEStsyinGEGLTSSNMKELEKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVS 189
Cdd:COG1196 270 EELRLELEELELELEEA-----QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 190 EKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNE 269
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 270 DLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQfsSQSSAAGGNEQLQHAMEERAQLEthvsQLMESLKQ 349
Cdd:COG1196 425 ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE--LLEEAALLEAALAELLEELAEAA----ARLLLLLE 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 350 LQVERDQYAENLKGesamwQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGE 429
Cdd:COG1196 499 AEADYEGFLEGVKA-----ALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGR 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 430 VEQLHKELERlTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQ 509
Cdd:COG1196 574 ATFLPLDKIR-ARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 510 LAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQ 589
Cdd:COG1196 653 GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEA 732
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1676440368 590 HLAAYEQLTSEKEAIHKQLLLQTQL----MDQLQHE--EVQGKMAA-----ELARQELQEAQERL 643
Cdd:COG1196 733 EREELLEELLEEEELLEEEALEELPeppdLEELEREleRLEREIEAlgpvnLLAIEEYEELEERY 797
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
140-788 |
7.89e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 7.89e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 140 MKELEKQqnqdtLDQLEKEKKD---YQQKLAKEQGSLREQLQVHIQTigiLVSEKAELQTALAHTQQAARQKAGESEDLA 216
Cdd:COG1196 195 LGELERQ-----LEPLERQAEKaerYRELKEELKELEAELLLLKLRE---LEAELEELEAELEELEAELEELEAELAELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 217 SRLQSSRQRVGELERTLstvstQQKQADRYNkdLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGV 296
Cdd:COG1196 267 AELEELRLELEELELEL-----EEAQAEEYE--LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 297 EELQKKLEMSELLLQQfsSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMA 376
Cdd:COG1196 340 EELEEELEEAEEELEE--AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 377 EqvhtLKEEKEHRERQVQELETSLAALRSQMEEPPPPEppagpsEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSH 456
Cdd:COG1196 418 R----LEEELEELEEALAELEEEEEEEEEALEEAAEEE------AELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 457 LNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEitSALQSEQH 536
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDE--VAAAAIEY 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 537 VKKELARKLGELQerLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMD 616
Cdd:COG1196 566 LKAAKAGRATFLP--LDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLA 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 617 QLQHeEVQGKMAAELARQELQEAQERLKATSQEnqqlqaqlsllvlpgegdvdqeeedeevpqSSLAIPEDLDSREAmva 696
Cdd:COG1196 644 GRLR-EVTLEGEGGSAGGSLTGGSRRELLAALL------------------------------EAEAELEELAERLA--- 689
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 697 ffnAAIARAEEEQARLRVQLKEQKARCRSLSHLAAPVQSKLEKEAVVPRNVDDSASEESNQALHVAMEKLQSRF-LEVMQ 775
Cdd:COG1196 690 ---EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPdLEELE 766
|
650
....*....|....
gi 1676440368 776 EKVE-LKERVEELE 788
Cdd:COG1196 767 RELErLEREIEALG 780
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
203-586 |
6.23e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.10 E-value: 6.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 203 QAARQKAGESEDLASRLQSsrqRVGELERTLSTVSTQQKQADRYNKDLTKERDalkLELYKNSKSNEDLRQQNSELEEKL 282
Cdd:TIGR02169 173 EKALEELEEVEENIERLDL---IIDEKRQQLERLRREREKAERYQALLKEKRE---YEGYELLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 283 RVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQ--------HAMEERAQ-----LETHVSQLMESLKQ 349
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvkekigelEAEIASLErsiaeKERELEDAEERLAK 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 350 LQVERDQY---AENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPppeppagpsEAEEQL 426
Cdd:TIGR02169 327 LEAEIDKLlaeIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR---------EKLEKL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 427 QGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQnreL 506
Cdd:TIGR02169 398 KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD---L 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 507 KEQLAELQNgfvrltnenmEITSAlqseqhvKKELARKLGELQ---ERLGELKETVELKSQEAQGLQEQRDQCLSHLQQY 583
Cdd:TIGR02169 475 KEEYDRVEK----------ELSKL-------QRELAEAEAQARaseERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERY 537
|
...
gi 1676440368 584 AAA 586
Cdd:TIGR02169 538 ATA 540
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
136-649 |
8.28e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.70 E-value: 8.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 136 TSSNMKELEKQQNQDTLDQLEKEKKDYQQK---LAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGES 212
Cdd:TIGR02168 316 RQLEELEAQLEELESKLDELAEELAELEEKleeLKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 213 EDLASRLQSSRQRV----GELERTLSTVSTQQKQADRYNKDLTKER-DALKLELYKNSKSNEDLRQQNSELEEKLRVLVA 287
Cdd:TIGR02168 396 ASLNNEIERLEARLerleDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELERLEEALEELREELEEAEQ 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 288 EKAAAQLGVEELQKKLEMSELLLQQFS-----------SQSSAAGGNEQLQHAMEERAQLETHVS--------------- 341
Cdd:TIGR02168 476 ALDAAERELAQLQARLDSLERLQENLEgfsegvkallkNQSGLSGILGVLSELISVDEGYEAAIEaalggrlqavvvenl 555
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 342 ----QLMESLKQ----------LQVERDQYAENLKGESAMWQQRVQQMAEQVHT-------------------------- 381
Cdd:TIGR02168 556 naakKAIAFLKQnelgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKfdpklrkalsyllggvlvvddldnal 635
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 382 -LKEEKEHRERQV---------------QELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLR 445
Cdd:TIGR02168 636 eLAKKLRPGYRIVtldgdlvrpggvitgGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELE 715
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 446 AQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNR----ELKEQLAELQNGFVRLT 521
Cdd:TIGR02168 716 QLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEeelaEAEAEIEELEAQIEQLK 795
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 522 NENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAY-----------QQH 590
Cdd:TIGR02168 796 EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIeeleelieeleSEL 875
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 1676440368 591 LAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEvQGKMAAELARQELQEAQERLKATSQE 649
Cdd:TIGR02168 876 EALLNERASLEEALALLRSELEELSEELRELE-SKRSELRRELEELREKLAQLELRLEG 933
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
143-845 |
1.57e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 1.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 143 LEKQQNQDTLDQLEKEKKDYQQKLAKEQgslrEQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSS 222
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELT----AELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQIL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 223 RQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKK 302
Cdd:TIGR02168 308 RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 303 LemSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYA-ENLKGESAMWQQRVQQMAEQVHT 381
Cdd:TIGR02168 388 V--AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELERLEEALEE 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 382 LKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPA-GPSEAEEQLQGEVEQLHKELERLTGQLRAQ------------- 447
Cdd:TIGR02168 466 LREELEEAEQALDAAERELAQLQARLDSLERLQENLeGFSEGVKALLKNQSGLSGILGVLSELISVDegyeaaieaalgg 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 448 ------VQDNES----LSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGF 517
Cdd:TIGR02168 546 rlqavvVENLNAakkaIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGV 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 518 V------------RLTNENMEI--------------TSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQE 571
Cdd:TIGR02168 626 LvvddldnalelaKKLRPGYRIvtldgdlvrpggviTGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRK 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 572 QRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQENQ 651
Cdd:TIGR02168 706 ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE 785
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 652 QLQAQLSLLVlpgegdvdqeeedeevpqsslaipEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHLAA 731
Cdd:TIGR02168 786 ELEAQIEQLK------------------------EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 732 PVQSKLEKEavvprNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEyialyqnQ 811
Cdd:TIGR02168 842 DLEEQIEEL-----SEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES-------K 909
|
730 740 750
....*....|....*....|....*....|....
gi 1676440368 812 RAVLKARHLEKEEYISRLAQDKEEMKVKLLELQE 845
Cdd:TIGR02168 910 RSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
352-643 |
2.02e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 2.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 352 VERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAgpSEAEEQLQGEVE 431
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL--EAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 432 QLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQla 511
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES-- 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 512 eLQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRdqclshlqqyaaayQQHL 591
Cdd:TIGR02168 829 -LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL--------------ALLR 893
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1676440368 592 AAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERL 643
Cdd:TIGR02168 894 SELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
141-488 |
8.26e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 8.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 141 KELEKQqnqdtLDQLEKekkdyQQKLAKEQGSLREQLQvHIQtIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQ 220
Cdd:TIGR02168 196 NELERQ-----LKSLER-----QAEKAERYKELKAELR-ELE-LALLVLRLEELREELEELQEELKEAEEELEELTAELQ 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 221 SSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQ 300
Cdd:TIGR02168 264 ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 301 KKLEmselllqqfssqssaaggneQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVH 380
Cdd:TIGR02168 344 EKLE--------------------ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 381 TLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSE---AEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHL 457
Cdd:TIGR02168 404 RLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEEleeELEELQEELERLEEALEELREELEEAEQALDAAERE 483
|
330 340 350
....*....|....*....|....*....|.
gi 1676440368 458 NREQEGRLLELEREAQRWSEQAEERKQILES 488
Cdd:TIGR02168 484 LAQLQARLDSLERLQENLEGFSEGVKALLKN 514
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
211-560 |
1.45e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 1.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 211 ESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKA 290
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 291 AAQLGVEELQKKLEMSELLLQQFSSQSSAAggNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYA---ENLKGESAM 367
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEEL--EAQIEQLKEELKALREALDELRAELTLLNEEAANLRerlESLERRIAA 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 368 WQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEE-----PPPPEPPAGPSEAEEQLQGEVEQLHKELERLTG 442
Cdd:TIGR02168 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnerASLEEALALLRSELEELSEELRELESKRSELRR 915
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 443 QLRAQvqdNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTisralsQNRELKEQLAELQNGFVRLTN 522
Cdd:TIGR02168 916 ELEEL---REKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIED------DEEEARRRLKRLENKIKELGP 986
|
330 340 350
....*....|....*....|....*....|....*...
gi 1676440368 523 ENMEITSALQSEQHVKKELARKLGELQERLGELKETVE 560
Cdd:TIGR02168 987 VNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIE 1024
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
376-649 |
3.03e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 3.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 376 AEQVHTLKEEKEHRERQV-----QELETSLAALRSQMEeppppeppagpsEAEEQLQGEVEQLHKELERLTGQLRAQVQD 450
Cdd:TIGR02168 212 AERYKELKAELRELELALlvlrlEELREELEELQEELK------------EAEEELEELTAELQELEEKLEELRLEVSEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 451 NESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSA 530
Cdd:TIGR02168 280 EEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 531 LQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQL-----TSEKEAIH 605
Cdd:TIGR02168 360 LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELlkkleEAELKELQ 439
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1676440368 606 KQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQE 649
Cdd:TIGR02168 440 AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
109-406 |
9.05e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 9.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 109 TESLRQLSQQLNGLVSESTSYingegltsSNMKELEKQQNQDTLDQLEKEKKDYQqKLAKEQGSLREQLQVHIQTIGILV 188
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEEL--------EEELEQLRKELEELSRQISALRKDLA-RLEAEVEQLEERIAQLSKELTELE 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 189 SEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSN 268
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 269 EDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEmsELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLK 348
Cdd:TIGR02168 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELE--ALLNERASLEEALALLRSELEELSEELRELESKRSELRRELE 918
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1676440368 349 QLQVERDQYAENLKGESAMWQQRVQQMAEQVHTL----KEEKEHRERQVQELETSLAALRSQ 406
Cdd:TIGR02168 919 ELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTleeaEALENKIEDDEEEARRRLKRLENK 980
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
144-608 |
9.34e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 59.28 E-value: 9.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 144 EKQQNQDTLDQLEKEKKDYQQKLA---KEQGSLREQLQVHIQTIGILVSE------KAELQTALAHTQQAARQK-AGESE 213
Cdd:PRK02224 245 EHEERREELETLEAEIEDLRETIAeteREREELAEEVRDLRERLEELEEErddllaEAGLDDADAEAVEARREElEDRDE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 214 DLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQ 293
Cdd:PRK02224 325 ELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAP 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 294 LGVEELQKKLEMSElllqqfssqssaaggnEQLQHAMEERAQLETHVSQLMESLKQLQVERDQyaenlkGESAMWQQRVQ 373
Cdd:PRK02224 405 VDLGNAEDFLEELR----------------EERDELREREAELEATLRTARERVEEAEALLEA------GKCPECGQPVE 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 374 QmAEQVHTLKEekehRERQVQELETSLAALRSQMEEPPPPEPPAGP-SEAEEQLQgEVEQLHKELERLTGQLRAQV-QDN 451
Cdd:PRK02224 463 G-SPHVETIEE----DRERVEELEAELEDLEEEVEEVEERLERAEDlVEAEDRIE-RLEERREDLEELIAERRETIeEKR 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 452 ESLSHLNREQEgrllELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNenmeITSAL 531
Cdd:PRK02224 537 ERAEELRERAA----ELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIAD----AEDEI 608
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1676440368 532 QSEQHVKKELARKLGELQERLGELKETvelKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAY-EQLTSEKEAIHKQL 608
Cdd:PRK02224 609 ERLREKREALAELNDERRERLAEKRER---KRELEAEFDEARIEEAREDKERAEEYLEQVEEKlDELREERDDLQAEI 683
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
269-619 |
1.04e-08 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 59.59 E-value: 1.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 269 EDLRQQNSELEEKLrvlvaekAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLK 348
Cdd:PRK04863 789 EQLRAEREELAERY-------ATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQ 861
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 349 QLQVERDQYAENLKGESAM-----------WQQRVQQMAEQVHTLKEEKEHRERQ---VQELETSLAALRSqmeeppppe 414
Cdd:PRK04863 862 QQRSQLEQAKEGLSALNRLlprlnlladetLADRVEEIREQLDEAEEAKRFVQQHgnaLAQLEPIVSVLQS--------- 932
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 415 ppagPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQrwseqaEERKQILESMQSDRt 494
Cdd:PRK04863 933 ----DPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLN------EKLRQRLEQAEQER- 1001
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 495 tisralsqnRELKEQLAELQNGFvrltNENMEITSALQSEQHVKKELarkLGELQERLGELkeTVELKSQEAQGLQEQRD 574
Cdd:PRK04863 1002 ---------TRAREQLRQAQAQL----AQYNQVLASLKSSYDAKRQM---LQELKQELQDL--GVPADSGAEERARARRD 1063
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1676440368 575 QClshlqqyaaaYQQHLAAYEQltseKEAIHKQLLLQTQLMDQLQ 619
Cdd:PRK04863 1064 EL----------HARLSANRSR----RNQLEKQLTFCEAEMDNLT 1094
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
420-726 |
6.49e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 6.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 420 SEAEEQLQ-----GEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDrt 494
Cdd:TIGR02168 219 KAELRELElallvLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE-- 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 495 tISRALSQNRELKEQLAELQNGFVRLTNEnmeitsaLQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRD 574
Cdd:TIGR02168 297 -ISRLEQQKQILRERLANLERQLEELEAQ-------LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 575 QCLSHLQqyaaayqqhlAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQENQQLQ 654
Cdd:TIGR02168 369 ELESRLE----------ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKEL 438
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1676440368 655 AQLSLLVLPGEGDVDqeeedeevpqsslaipEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSL 726
Cdd:TIGR02168 439 QAELEELEEELEELQ----------------EELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
324-566 |
6.66e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.85 E-value: 6.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 324 EQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLkgesamWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAAL 403
Cdd:COG4913 255 EPIRELAERYAAARERLAELEYLRAALRLWFAQRRLEL------LEAELEELRAELARLEAELERLEARLDALREELDEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 404 RSQMEEPpppeppagPSEAEEQLQGEVEQLHKELERLTgQLRAQVQdnESLSHLNREQEGRLLELEREAQRWSEQAEERK 483
Cdd:COG4913 329 EAQIRGN--------GGDRLEQLEREIERLERELEERE-RRRARLE--ALLAALGLPLPASAEEFAALRAEAAALLEALE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 484 QILESMQSDRTTISRALsqnRELKEQLAELQNGFVRLTNENMEITSALqseQHVKKELARKLGELQERL---GELketVE 560
Cdd:COG4913 398 EELEALEEALAEAEAAL---RDLRRELRELEAEIASLERRKSNIPARL---LALRDALAEALGLDEAELpfvGEL---IE 468
|
....*.
gi 1676440368 561 LKSQEA 566
Cdd:COG4913 469 VRPEEE 474
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
141-649 |
8.10e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.46 E-value: 8.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 141 KELEKQQNQ-DTLDQLEKEKKDYQQKLAK--EQGSLREQLQVHIQTIgilvsEKAELQTALAHTQQAARQKAGESEDLAS 217
Cdd:COG4913 242 EALEDAREQiELLEPIRELAERYAAARERlaELEYLRAALRLWFAQR-----RLELLEAELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 218 RLQSSRQRVGELERTLSTVSTQQKQadrynkDLTKERDALKLELyknsksnEDLRQQNSELEEKLRVLVAEKAAAQLGVE 297
Cdd:COG4913 317 RLDALREELDELEAQIRGNGGDRLE------QLEREIERLEREL-------EERERRRARLEALLAALGLPLPASAEEFA 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 298 ELQKKL---------EMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLqveRDQYAENL------- 361
Cdd:COG4913 384 ALRAEAaallealeeELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLAL---RDALAEALgldeael 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 362 ---------KGESAMWQ---------------------QRVQ------QMAEQVHTLKEEKEHRERQVQEL-ETSLAAlr 404
Cdd:COG4913 461 pfvgelievRPEEERWRgaiervlggfaltllvppehyAAALrwvnrlHLRGRLVYERVRTGLPDPERPRLdPDSLAG-- 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 405 sqmeeppppEPPAGPSEAEEQLQGE------------VEQLHKELERLT--GQL-----RAQVQDNESLSHL------NR 459
Cdd:COG4913 539 ---------KLDFKPHPFRAWLEAElgrrfdyvcvdsPEELRRHPRAITraGQVkgngtRHEKDDRRRIRSRyvlgfdNR 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 460 EQ----EGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQN------RELKEQLAELQNGFVRLTNENMEIts 529
Cdd:COG4913 610 AKlaalEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdeidvASAEREIAELEAELERLDASSDDL-- 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 530 alqseqhvkKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQhlaayeqlTSEKEAIHKQLL 609
Cdd:COG4913 688 ---------AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEA--------AEDLARLELRAL 750
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 1676440368 610 LQTQLmDQLQHEEVQGKMAAELaRQELQEAQERLKATSQE 649
Cdd:COG4913 751 LEERF-AAALGDAVERELRENL-EERIDALRARLNRAEEE 788
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
224-564 |
1.62e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 55.13 E-value: 1.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 224 QRVGELERTLSTVSTQQKQAD-RYNKDLTKERDALK--LELYKNSKSNEDlRQQNSELEEKLRVLVAEKAAAQLGVEELQ 300
Cdd:pfam17380 237 ERRKESFNLAEDVTTMTPEYTvRYNGQTMTENEFLNqlLHIVQHQKAVSE-RQQQEKFEKMEQERLRQEKEEKAREVERR 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 301 KKLEMSELLlQQFSSQSSAAGGNEQLQHAME-----ERAQLETHVSQlMESLKQ----LQVERDQYAENLKGESAMWQQR 371
Cdd:pfam17380 316 RKLEEAEKA-RQAEMDRQAAIYAEQERMAMErerelERIRQEERKRE-LERIRQeeiaMEISRMRELERLQMERQQKNER 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 372 VQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPppeppagpseaEEQLQGEVEQLHKELERLTGQLRAQVQDN 451
Cdd:pfam17380 394 VRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEAR-----------QREVRRLEEERAREMERVRLEEQERQQQV 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 452 ESLSHLNREQEGRLLELEREAQRWSEQAEERKQILE-SMQSDRTTISRALSQNRELKEQLAELQNGFV----RLTNENME 526
Cdd:pfam17380 463 ERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEkELEERKQAMIEEERKRKLLEKEMEERQKAIYeeerRREAEEER 542
|
330 340 350
....*....|....*....|....*....|....*...
gi 1676440368 527 ITSALQSEQHVKKELARKLGELQERLGELKETVELKSQ 564
Cdd:pfam17380 543 RKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQ 580
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
421-788 |
1.87e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 55.34 E-value: 1.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 421 EAEEQLQGEVEQLH----------KELERLTGQLRAQVQDNESLS-HLNREQEG---------RLLELEREAQRWSEQAE 480
Cdd:COG3096 289 ELRRELFGARRQLAeeqyrlvemaRELEELSARESDLEQDYQAASdHLNLVQTAlrqqekierYQEDLEELTERLEEQEE 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 481 ERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFvrltneNMEITSALQSEQHVK-KELARKLGELQERLGE-LKET 558
Cdd:COG3096 369 VVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQAL------DVQQTRAIQYQQAVQaLEKARALCGLPDLTPEnAEDY 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 559 VELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTS-----EKEAIHKQlllQTQLMDQLQHEEVQGKMAAELaR 633
Cdd:COG3096 443 LAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKiagevERSQAWQT---ARELLRRYRSQQALAQRLQQL-R 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 634 QELQEAQERLKatSQENQQLQAQLSLLVLPGEGdvdqeeedeevpQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLR 713
Cdd:COG3096 519 AQLAELEQRLR--QQQNAERLLEEFCQRIGQQL------------DAAEELEELLAELEAQLEELEEQAAEAVEQRSELR 584
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1676440368 714 VQLKEQKARCRSLSHLAaPV----QSKLEKEAVvprnvDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELE 788
Cdd:COG3096 585 QQLEQLRARIKELAARA-PAwlaaQDALERLRE-----QSGEALADSQEVTAAMQQLLEREREATVERDELAARKQALE 657
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
142-856 |
2.62e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 2.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 142 ELEKQQNQDTLDQLEKEKKDYQ---QKLAKEQGSLREQLQVHIQTIGILVS-EKAELQTALAHTQQAARQKAGESEDLAS 217
Cdd:TIGR02169 236 ERQKEAIERQLASLEEELEKLTeeiSELEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEAEIASLERSIAEKER 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 218 RLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVE 297
Cdd:TIGR02169 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 298 ELQKKLEmselllqqfSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGEsamwQQRVQQMAE 377
Cdd:TIGR02169 396 KLKREIN---------ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ----EWKLEQLAA 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 378 QVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSE-----AEEQLQ-------GEVEQLHKELER------ 439
Cdd:TIGR02169 463 DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVrggraVEEVLKasiqgvhGTVAQLGSVGERyataie 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 440 --LTGQLRAQVQDNES-----LSHLNREQEGR------------------------------LLELEREAQRWSEQAEER 482
Cdd:TIGR02169 543 vaAGNRLNNVVVEDDAvakeaIELLKRRKAGRatflplnkmrderrdlsilsedgvigfavdLVEFDPKYEPAFKYVFGD 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 483 KQILESMQSDR--TTISRALSQNRELKEQLAELQNGFVrltnenmeitsALQSEQHVKKELARKLGELQERLGELKETVE 560
Cdd:TIGR02169 623 TLVVEDIEAARrlMGKYRMVTLEGELFEKSGAMTGGSR-----------APRGGILFSRSEPAELQRLRERLEGLKRELS 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 561 LKSQEAQGLQEQRDQCLSHLQqyaAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQH--------EEVQGKMAAELA 632
Cdd:TIGR02169 692 SLQSELRRIENRLDELSQELS---DASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSleqeienvKSELKELEARIE 768
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 633 RQELQEAQERLKATSQENQQLQAQLSLLVLPGEGDVDQEEEDEEVPQSslaIPEDLDSREAMVAFFNAAIARAEEEQARL 712
Cdd:TIGR02169 769 ELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLRE---IEQKLNRLTLEKEYLEKEIQELQEQRIDL 845
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 713 RVQLKEQKARCRSLSHLAAPVQSKLEKEAVVPRNVDDSASEESNQALHV--AMEKLQSRFLEVMQEKVELKERVEELEHC 790
Cdd:TIGR02169 846 KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELeaQLRELERKIEELEAQIEKKRKRLSELKAK 925
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1676440368 791 CIQLSGETDTIGEYIALYQNQRA------VLKARHLEKEEYISRLA-------QDKEEMKVKLLELQELVLRLVNERNE 856
Cdd:TIGR02169 926 LEALEEELSEIEDPKGEDEEIPEeelsleDVQAELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERKA 1004
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
136-513 |
3.13e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.39 E-value: 3.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 136 TSSNMKELEKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQV----------HIQTIGILVSEKAELQTALAHTQQA- 204
Cdd:COG4717 100 LEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAElperleeleeRLEELRELEEELEELEAELAELQEEl 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 205 ARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALklelyKNSKSNEDLRQQNSELEEKLRV 284
Cdd:COG4717 180 EELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL-----ENELEAAALEERLKEARLLLLI 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 285 LVAEKAAAQLGVEELQKKLEMSELL--------LQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQ 356
Cdd:COG4717 255 AAALLALLGLGGSLLSLILTIAGVLflvlgllaLLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDL 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 357 YAENLKGESAMWQQRVQQMAEqvhtlkEEKEHRERQVQELETSLAAL--RSQMEEPPPPEPPAGPSEAEEQLQGEVEQLH 434
Cdd:COG4717 335 SPEELLELLDRIEELQELLRE------AEELEEELQLEELEQEIAALlaEAGVEDEEELRAALEQAEEYQELKEELEELE 408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 435 KELERLTGQLRAQVQ--DNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRtTISRALSQNRELKEQLAE 512
Cdd:COG4717 409 EQLEELLGELEELLEalDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDG-ELAELLQELEELKAELRE 487
|
.
gi 1676440368 513 L 513
Cdd:COG4717 488 L 488
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
226-648 |
3.27e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.39 E-value: 3.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 226 VGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEM 305
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 306 SELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEE 385
Cdd:COG4717 128 LPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 386 KEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQ-------------LQGEVEQLHKELERLTGQLRA------ 446
Cdd:COG4717 208 LAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEarlllliaaallaLLGLGGSLLSLILTIAGVLFLvlglla 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 447 ---QVQDNESLSHLNREQEGRLLELER--EAQRWSEQAEER-----------KQILESMQSDRTTISRALSQNRELK--E 508
Cdd:COG4717 288 llfLLLAREKASLGKEAEELQALPALEelEEEELEELLAALglppdlspeelLELLDRIEELQELLREAEELEEELQleE 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 509 QLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVE--LKSQEAQGLQEQRDQCLSHLQQYAAA 586
Cdd:COG4717 368 LEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEelLEALDEEELEEELEELEEELEELEEE 447
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1676440368 587 YQQHLAAYEQLTSEKEAIHK-----QLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQ 648
Cdd:COG4717 448 LEELREELAELEAELEQLEEdgelaELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERL 514
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
139-650 |
5.24e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.99 E-value: 5.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 139 NMKELEKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASR 218
Cdd:PTZ00121 1210 EERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEK 1289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 219 LQSSRQRVGELERT---LSTVSTQQKQADRYNK---DLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAA 292
Cdd:PTZ00121 1290 KKADEAKKAEEKKKadeAKKKAEEAKKADEAKKkaeEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA 1369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 293 QLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRV 372
Cdd:PTZ00121 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEA 1449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 373 QQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGE-----VEQLHKELERLTGQLRAQ 447
Cdd:PTZ00121 1450 KKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAeakkkADEAKKAEEAKKADEAKK 1529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 448 VQDNESLSHLNREQEGRLLELEREAQRwSEQAEERKQILESM--QSDRTTISRALSQNRELKEQLAELQNGFVRLTNENM 525
Cdd:PTZ00121 1530 AEEAKKADEAKKAEEKKKADELKKAEE-LKKAEEKKKAEEAKkaEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK 1608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 526 EITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIH 605
Cdd:PTZ00121 1609 AEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEK 1688
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 1676440368 606 KQlllqtqlMDQLQHEEVQGKMAAELARQELQEAQ--ERLKATSQEN 650
Cdd:PTZ00121 1689 KA-------AEALKKEAEEAKKAEELKKKEAEEKKkaEELKKAEEEN 1728
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
109-564 |
7.12e-07 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 53.42 E-value: 7.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 109 TESLRQLsqqLNGLVSESTSYINGEGLTSSNmkelEKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREqlqvhiqtigiLV 188
Cdd:PRK04863 252 TQSDRDL---FKHLITESTNYVAADYMRHAN----ERRVHLEEALELRRELYTSRRQLAAEQYRLVE-----------MA 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 189 SEKAELQTALAHTQQaarqkagESEDLASRLQssrqRVGELERtlstvstQQKQADRYNKDLtkerDALKLELYKNSKSN 268
Cdd:PRK04863 314 RELAELNEAESDLEQ-------DYQAASDHLN----LVQTALR-------QQEKIERYQADL----EELEERLEEQNEVV 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 269 EDLRQQNSELEEKLRvlvaekaAAQLGVEELQKKLEMSElllQQFSSQSSAAGGNEQLQHAMEERAQL----ETHVSQLM 344
Cdd:PRK04863 372 EEADEQQEENEARAE-------AAEEEVDELKSQLADYQ---QALDVQQTRAIQYQQAVQALERAKQLcglpDLTADNAE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 345 ESLKQLQVERDQYAENLKG------ESAMWQQRVQQMAEQVHTLKEEKEHRE--RQVQELETSLAALRSQMEEPPPPEPP 416
Cdd:PRK04863 442 DWLEEFQAKEQEATEELLSleqklsVAQAAHSQFEQAYQLVRKIAGEVSRSEawDVARELLRRLREQRHLAEQLQQLRMR 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 417 AGPSEAEEQLQGEVEQLhkeLERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTI 496
Cdd:PRK04863 522 LSELEQRLRQQQRAERL---LAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRL 598
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1676440368 497 SRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQ 564
Cdd:PRK04863 599 AARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQ 666
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
248-649 |
7.19e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 53.23 E-value: 7.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 248 KDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQ 327
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 328 HAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQM 407
Cdd:COG4717 129 PLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRL 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 408 EEPPppeppagpsEAEEQLQGEVEQLHKELERLTGQLRAQvQDNESLSHLNREQ--EGRLLELEREAQRWSEQAEERKQI 485
Cdd:COG4717 209 AELE---------EELEEAQEELEELEEELEQLENELEAA-ALEERLKEARLLLliAAALLALLGLGGSLLSLILTIAGV 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 486 LESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKEL-----------ARKLGELQERLGE 554
Cdd:COG4717 279 LFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLspeellelldrIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 555 LKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHlAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELA-- 632
Cdd:COG4717 359 LEEELQLEELEQEIAALLAEAGVEDEEELRAALEQA-EEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEel 437
|
410
....*....|....*..
gi 1676440368 633 RQELQEAQERLKATSQE 649
Cdd:COG4717 438 EEELEELEEELEELREE 454
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
137-560 |
7.49e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 7.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 137 SSNMKELEKQQNQDTLDQLE--KEKKDYQQKLAKEQGSLREQLQvhiqTIGILVSEKAELQTALAHTQQAARQKAGESED 214
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLReiNEISSELPELREELEKLEKEVK----ELEELKEEIEELEKELESLEGSKRKLEEKIRE 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 215 LASRLQSSRQRVGELERTLSTVSTQQKQADRYNKdLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAaql 294
Cdd:PRK03918 264 LEERIEELKKEIEELEEKVKELKELKEKAEEYIK-LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER--- 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 295 gVEELQKKLEMSELLLQQFssqssaaggneqlqhamEERAQLETHVSQLMESLKQLQVERDQYA-ENLKGESAMWQQRVQ 373
Cdd:PRK03918 340 -LEELKKKLKELEKRLEEL-----------------EERHELYEEAKAKKEELERLKKRLTGLTpEKLEKELEELEKAKE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 374 QMAEQVHTLKEEKEHRERQVQELETSLAALRSqmeePPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNES 453
Cdd:PRK03918 402 EIEEEISKITARIGELKKEIKELKKAIEELKK----AKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERK 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 454 LSHLNREQEGRLLElEREAQRWSEQAEERKQILESMQS-DRTTISRALSQNRELKEQLAELQnGFVRLTNENMEITSALQ 532
Cdd:PRK03918 478 LRKELRELEKVLKK-ESELIKLKELAEQLKELEEKLKKyNLEELEKKAEEYEKLKEKLIKLK-GEIKSLKKELEKLEELK 555
|
410 420
....*....|....*....|....*...
gi 1676440368 533 SEqhvKKELARKLGELQERLGELKETVE 560
Cdd:PRK03918 556 KK---LAELEKKLDELEEELAELLKELE 580
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
139-609 |
1.50e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.08 E-value: 1.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 139 NMKELEKQQNQdtLDQLEKEKKDYQQKLAKEQgSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEdlasr 218
Cdd:COG4717 69 NLKELKELEEE--LKEAEEKEEEYAELQEELE-ELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAE----- 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 219 LQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSksnEDLRQQNSELEEKLRVLVAEKAAAQLGVEE 298
Cdd:COG4717 141 LAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLS---LATEEELQDLAEELEELQQRLAELEEELEE 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 299 LQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLqverdqYAENLKGESAMWQQRVQQMAEQ 378
Cdd:COG4717 218 AQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLL------SLILTIAGVLFLVLGLLALLFL 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 379 VHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLH--KELERLTGQLRAQVQDNESLSH 456
Cdd:COG4717 292 LLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEelQELLREAEELEEELQLEELEQE 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 457 LNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAElqngfvrltnenMEITSALQSEQH 536
Cdd:COG4717 372 IAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE------------EELEEELEELEE 439
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1676440368 537 VKKELARKLGELQERLGELKETVE--LKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLL 609
Cdd:COG4717 440 ELEELEEELEELREELAELEAELEqlEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERL 514
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
248-513 |
2.02e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 2.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 248 KDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVL--VAEKAAAQLGVEELQKKL-----EMSELL-----LQQFSS 315
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALqrLAEYSWDEIDVASAEREIaeleaELERLDassddLAALEE 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 316 QSSAAggNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQE 395
Cdd:COG4913 693 QLEEL--EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELREN 770
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 396 LETSLAALRSQMeeppppeppagpSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNES-LSHLNREQEGRLLELEreaQR 474
Cdd:COG4913 771 LEERIDALRARL------------NRAEEELERAMRAFNREWPAETADLDADLESLPEyLALLDRLEEDGLPEYE---ER 835
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1676440368 475 WseqaeeRKQILESMQSDRTTISRALSQNREL-KEQLAEL 513
Cdd:COG4913 836 F------KELLNENSIEFVADLLSKLRRAIREiKERIDPL 869
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
191-652 |
3.60e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 51.07 E-value: 3.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 191 KAELQTALahtQQAARQKAGESEDLASrlqssrqrVGELERTLSTVstqqKQADRYNKDLtkerDALKLELyknSKSNED 270
Cdd:PRK11281 38 EADVQAQL---DALNKQKLLEAEDKLV--------QQDLEQTLALL----DKIDRQKEET----EQLKQQL---AQAPAK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 271 LRQQNSELE--EKLRVLVAEKAAAQLGVEELQKKLEmsELLLQQFSSQSSAAGGNEQL--QHAMEERAQlethvSQLMES 346
Cdd:PRK11281 96 LRQAQAELEalKDDNDEETRETLSTLSLRQLESRLA--QTLDQLQNAQNDLAEYNSQLvsLQTQPERAQ-----AALYAN 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 347 lkqlqverdqyaenlkgesamwQQRVQQMAEQVHTLKEEKEH-RERQVQELETSLAALRSQMEEPPPPEppagpsEAEEQ 425
Cdd:PRK11281 169 ----------------------SQRLQQIRNLLKGGKVGGKAlRPSQRVLLQAEQALLNAQNDLQRKSL------EGNTQ 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 426 LQGEVEQLHKELERLTGQLRAQVQDNESLshLNREqegRLLELEREAQrwseQAEERKQILESMQSDrtTISRALSQNRE 505
Cdd:PRK11281 221 LQDLLQKQRDYLTARIQRLEHQLQLLQEA--INSK---RLTLSEKTVQ----EAQSQDEAARIQANP--LVAQELEINLQ 289
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 506 LKEQLAELQNGFVRLTNENMEIT----SALQSEQHVKKE---------LARKLGELQERLGELKETVELKSQEAQ----- 567
Cdd:PRK11281 290 LSQRLLKATEKLNTLTQQNLRVKnwldRLTQSERNIKEQisvlkgsllLSRILYQQQQALPSADLIEGLADRIADlrleq 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 568 -GLQEQRDQcLSHLQQYAAAyqqhlaayeqltsekeaihkqlLLQTQlmdqlqheevQGKMAAELARQELQEAQERLKAT 646
Cdd:PRK11281 370 fEINQQRDA-LFQPDAYIDK----------------------LEAGH----------KSEVTDEVRDALLQLLDERRELL 416
|
....*.
gi 1676440368 647 SQENQQ 652
Cdd:PRK11281 417 DQLNKQ 422
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
141-495 |
5.14e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 5.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 141 KELEKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHiqtigilvSEKAELQTALAHTQQAARQKAGESEDLASRLQ 220
Cdd:PTZ00121 1452 KAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK--------AEEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 221 SSRQRVGELERTLSTV--STQQKQADRYNK--DLTKERDALKLELYKNSKSNEDLRQQNSELEEKlrvlvAEKAAAQlgv 296
Cdd:PTZ00121 1524 ADEAKKAEEAKKADEAkkAEEKKKADELKKaeELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK-----AEEARIE--- 1595
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 297 EELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENL--KGESAMWQQRVQQ 374
Cdd:PTZ00121 1596 EVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKikAAEEAKKAEEDKK 1675
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 375 MAEQVHTLKEEKEHRERQV-QELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELE---RLTGQLRAQVQD 450
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALkKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEedkKKAEEAKKDEEE 1755
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1676440368 451 NESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTT 495
Cdd:PTZ00121 1756 KKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
215-439 |
5.90e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 5.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 215 LASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQL 294
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 295 GVEELQKKLE-----MSELL--LQQFSSQSS-----AAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLK 362
Cdd:COG4942 91 EIAELRAELEaqkeeLAELLraLYRLGRQPPlalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1676440368 363 GESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPppeppagpsEAEEQLQGEVEQLHKELER 439
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ---------QEAEELEALIARLEAEAAA 238
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
137-649 |
6.39e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.12 E-value: 6.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 137 SSNMKELEKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQvHIQTIGILVSEKAELQTALAHTQQAARQKAgeSEDLA 216
Cdd:pfam15921 254 SQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQAN-SIQSQLEIIQEQARNQNSMYMRQLSDLEST--VSQLR 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 217 SRLQSSRQ----RVGELERT-------LSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEK---- 281
Cdd:pfam15921 331 SELREAKRmyedKIEELEKQlvlanseLTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRdtgn 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 282 ------LRVLVAEKAAAQLGVEELQKKLEmSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQV--- 352
Cdd:pfam15921 411 sitidhLRRELDDRNMEVQRLEALLKAMK-SECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAkkm 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 353 -----------------ERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRER----------QVQELETSLAALRS 405
Cdd:pfam15921 490 tlessertvsdltaslqEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNvqtecealklQMAEKDKVIEILRQ 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 406 QMEEPPPPEPPAGPSEAeeQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQI 485
Cdd:pfam15921 570 QIENMTQLVGQHGRTAG--AMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRA 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 486 LESMQSDRTTISRALSQNR----ELKEQLAELQNGFvRLTNENMEITSalqseqhvkKELARKLGELQERLGELKETveL 561
Cdd:pfam15921 648 VKDIKQERDQLLNEVKTSRnelnSLSEDYEVLKRNF-RNKSEEMETTT---------NKLKMQLKSAQSELEQTRNT--L 715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 562 KSQE---------AQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEevQGKMAAELA 632
Cdd:pfam15921 716 KSMEgsdghamkvAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATE--KNKMAGELE 793
|
570
....*....|....*..
gi 1676440368 633 RQELQEAQERLKATSQE 649
Cdd:pfam15921 794 VLRSQERRLKEKVANME 810
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
277-548 |
6.39e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 50.34 E-value: 6.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 277 ELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQ 356
Cdd:COG3096 789 ELRAERDELAEQYAKASFDVQKLQRLHQAFSQFVGGHLAVAFAPDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQ 868
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 357 YAENLKGESAM-----------WQQRVQQMAEQVHTLKEEKEHRERQ---VQELETSLAALRSqmeeppppeppagPSEA 422
Cdd:COG3096 869 LKEQLQLLNKLlpqanlladetLADRLEELREELDAAQEAQAFIQQHgkaLAQLEPLVAVLQS-------------DPEQ 935
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 423 EEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLElerEAQRWSEQAEERkqiLESMQSDRttisralsq 502
Cdd:COG3096 936 FEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHFSYEDAVGLLG---ENSDLNEKLRAR---LEQAEEAR--------- 1000
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1676440368 503 nRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGEL 548
Cdd:COG3096 1001 -REAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEEL 1045
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
86-405 |
7.37e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 7.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 86 DLTQSHDAGNCSNLMEETKTFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELE--KQQNQDTLDQLEKEKKDYQ 163
Cdd:TIGR02168 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEaeIEELEAQIEQLKEELKALR 802
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 164 QKLAKEQG---SLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQ 240
Cdd:TIGR02168 803 EALDELRAeltLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNER 882
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 241 KQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLemselllqqfssqssAA 320
Cdd:TIGR02168 883 ASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL---------------SE 947
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 321 GGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAE-NLkgeSAMwqqrvqqmaEQVHTLKEEKEHRERQVQELETS 399
Cdd:TIGR02168 948 EYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPvNL---AAI---------EEYEELKERYDFLTAQKEDLTEA 1015
|
....*.
gi 1676440368 400 LAALRS 405
Cdd:TIGR02168 1016 KETLEE 1021
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
420-647 |
9.62e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 9.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 420 SEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRA 499
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 500 LSQNRE-LKEQLAELQ-NGFVRLTNENMEITSALQSE------QHVKKELARKLGELQERLGELKETVELKSQEAQGLQE 571
Cdd:COG4942 99 LEAQKEeLAELLRALYrLGRQPPLALLLSPEDFLDAVrrlqylKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1676440368 572 QRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLllqtqlmDQLQHEEVQGKMAAELARQELQEAQERLKATS 647
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAEL-------AELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
142-644 |
1.40e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 142 ELEKQQNQ---DTLDQLEKEKKDYQQKLAkEQGSLREQLQVHIQTIGI-LVSEKAELQTALAHTQQAARQKAGESEDLAS 217
Cdd:COG4913 327 ELEAQIRGnggDRLEQLEREIERLERELE-ERERRRARLEALLAALGLpLPASAEEFAALRAEAAALLEALEEELEALEE 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 218 RLQSSRQRVGELERTLSTVSTQ----QKQADRYNKDLTKERDALKLELyknSKSNEDLR------QQNSELEE------- 280
Cdd:COG4913 406 ALAEAEAALRDLRRELRELEAEiaslERRKSNIPARLLALRDALAEAL---GLDEAELPfvgeliEVRPEEERwrgaier 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 281 -----KLRVLVAEKAAAQ----------------LGVEELQKKLEMSEL----LLQQFSSQSSAAGG--NEQLQHAM--- 330
Cdd:COG4913 483 vlggfALTLLVPPEHYAAalrwvnrlhlrgrlvyERVRTGLPDPERPRLdpdsLAGKLDFKPHPFRAwlEAELGRRFdyv 562
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 331 --EERAQLETHVSQLME--------SLKQLQVERDQYAENLKGESAmwQQRVQQMAEQVHTLKEEKEHRERQVQELETSL 400
Cdd:COG4913 563 cvDSPEELRRHPRAITRagqvkgngTRHEKDDRRRIRSRYVLGFDN--RAKLAALEAELAELEEELAEAEERLEALEAEL 640
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 401 AALRSQmeePPPPEPPAGPSEAEEqlqgEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEgrllELEREAQRWSEQAE 480
Cdd:COG4913 641 DALQER---REALQRLAEYSWDEI----DVASAEREIAELEAELERLDASSDDLAALEEQLE----ELEAELEELEEELD 709
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 481 ERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENM-EITSALQSEQHVKKELARKLGELQERLGELKETV 559
Cdd:COG4913 710 ELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERfAAALGDAVERELRENLEERIDALRARLNRAEEEL 789
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 560 ELKSQEAqglQEQRDQCLSHLQQYAAAYQQHLAAYEQLTS----EKEAIHKQLLLQ--TQLMDQLQHEevqgkmaaelAR 633
Cdd:COG4913 790 ERAMRAF---NREWPAETADLDADLESLPEYLALLDRLEEdglpEYEERFKELLNEnsIEFVADLLSK----------LR 856
|
570
....*....|.
gi 1676440368 634 QELQEAQERLK 644
Cdd:COG4913 857 RAIREIKERID 867
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
133-575 |
1.42e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.95 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 133 EGLTSSNMKELEKQQNQDTLDQLEKEKKDYQqklAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGES 212
Cdd:pfam05483 362 EELLRTEQQRLEKNEDQLKIITMELQKKSSE---LEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKE 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 213 EDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAA 292
Cdd:pfam05483 439 QELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKH 518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 293 QlgvEELQKKLEMSELLLQQFSSQSsaaggneqlQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRV 372
Cdd:pfam05483 519 Q---EDIINCKKQEERMLKQIENLE---------EKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKE 586
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 373 QQMA---EQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAgpSEAEEQLQGEVEQLHKELERLTGQLRAQVQ 449
Cdd:pfam05483 587 KQMKileNKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAY--EIKVNKLELELASAKQKFEEIIDNYQKEIE 664
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 450 DNESlshlnrEQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNenmeitS 529
Cdd:pfam05483 665 DKKI------SEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYK------N 732
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1676440368 530 ALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQ 575
Cdd:pfam05483 733 KEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKE 778
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
110-812 |
1.53e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 110 ESLRQLSQQLNGLVSESTSyinGEGLT-SSNMKELEKQQNQdtLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILV 188
Cdd:TIGR02169 268 EEIEQLLEELNKKIKDLGE---EEQLRvKEKIGELEAEIAS--LERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 189 SEKAELQTALAHTQQAARQKAGESEDLASRLQssrqrvgELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSN 268
Cdd:TIGR02169 343 REIEEERKRRDKLTEEYAELKEELEDLRAELE-------EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 269 EDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAggNEQLQHAMEERAQLETHVSQLMESLK 348
Cdd:TIGR02169 416 QRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY--EQELYDLKEEYDRVEKELSKLQRELA 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 349 QLQVERDQYAENLKGESAMwQQRVQQMAEQVH-TLKEEKEHRERQVQELETSLAA-------------------LRS--- 405
Cdd:TIGR02169 494 EAEAQARASEERVRGGRAV-EEVLKASIQGVHgTVAQLGSVGERYATAIEVAAGNrlnnvvveddavakeaielLKRrka 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 406 ------------QMEEPPPPEPPAGPS-------EAEEQLQGEVEQ------LHKELE---RLTGQLRAQVQDNESL--- 454
Cdd:TIGR02169 573 gratflplnkmrDERRDLSILSEDGVIgfavdlvEFDPKYEPAFKYvfgdtlVVEDIEaarRLMGKYRMVTLEGELFeks 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 455 ------SHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSqnrELKEQLAELQNGFVRLTNENMEIT 528
Cdd:TIGR02169 653 gamtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLD---ELSQELSDASRKIGEIEKEIEQLE 729
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 529 SALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQrdqcLSHLQQYAAAYQQHLAAY-----EQLTSEKEA 603
Cdd:TIGR02169 730 QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEED----LHKLEEALNDLEARLSHSripeiQAELSKLEE 805
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 604 IHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQENQQLQAQLSLLVLPGEGDVDQEEEDEEVPQSSLA 683
Cdd:TIGR02169 806 EVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 684 -IPEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSL-SHLAAPVQSKLEKEAVVPRNVDDSASEESNQALHV 761
Cdd:TIGR02169 886 dLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALeEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEE 965
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|.
gi 1676440368 762 AMEKLQSRFLEVMQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQR 812
Cdd:TIGR02169 966 EIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
339-643 |
1.90e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.80 E-value: 1.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 339 HVSQLMESLKQLQ-VERDQYA-ENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLA----ALRSQM----- 407
Cdd:COG3096 335 HLNLVQTALRQQEkIERYQEDlEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLAdyqqALDVQQtraiq 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 408 ------EEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQdNESLSHLNREQEGRLLELER----EAQRwSE 477
Cdd:COG3096 415 yqqavqALEKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQ-KLSVADAARRQFEKAYELVCkiagEVER-SQ 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 478 QAEERKQILESMQSDRTTISRALSQNRELKE--QLAELQNGFVRLTNE-NMEITSALQSEQhvkkELARKLGELQERLGE 554
Cdd:COG3096 493 AWQTARELLRRYRSQQALAQRLQQLRAQLAEleQRLRQQQNAERLLEEfCQRIGQQLDAAE----ELEELLAELEAQLEE 568
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 555 LKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHeEVQGKMAAELARQ 634
Cdd:COG3096 569 LEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQ-LLEREREATVERD 647
|
....*....
gi 1676440368 635 ELQEAQERL 643
Cdd:COG3096 648 ELAARKQAL 656
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
192-439 |
1.91e-05 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 48.48 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 192 AELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGElertlSTVSTQQKQADRYNK-DLTKERDALKLELYKNSKSNED 270
Cdd:pfam05667 254 EQLRSAALAGTEATSGASRSAQDLAELLSSFSGSSTT-----DTGLTKGSRFTHTEKlQFTNEAPAATSSPPTKVETEEE 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 271 LRQQN----SELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQssaaggNEQLQHAMEERAQLETHVSQLMES 346
Cdd:pfam05667 329 LQQQReeelEELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQ------NEELEKQYKVKKKTLDLLPDAEEN 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 347 LKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGpsEAEEQL 426
Cdd:pfam05667 403 IAKLQALVDASAQRLVELAGQWEKHRVPLIEEYRALKEAKSNKEDESQRKLEEIKELREKIKEVAEEAKQKE--ELYKQL 480
|
250
....*....|...
gi 1676440368 427 QGEVEQLHKELER 439
Cdd:pfam05667 481 VAEYERLPKDVSR 493
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
155-616 |
2.31e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.23 E-value: 2.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 155 LEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLS 234
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 235 tvstqqkqadryNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEklrvLVAEKAAAQLGVEELQKKLEMsELLLQQFS 314
Cdd:COG4717 127 ------------LLPLYQELEALEAELAELPERLEELEERLEELRE----LEEELEELEAELAELQEELEE-LLEQLSLA 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 315 SQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAmwQQRVQQMAEQ---------VHTLKEE 385
Cdd:COG4717 190 TEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAL--EERLKEARLLlliaaallaLLGLGGS 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 386 KEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEV------EQLHKELERLTGQLRAQVQDNESLSHLNR 459
Cdd:COG4717 268 LLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPAleeleeEELEELLAALGLPPDLSPEELLELLDRIE 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 460 EQEGRLLELEREAQR--WSEQAEERKQILESMQ-SDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALqsEQH 536
Cdd:COG4717 348 ELQELLREAEELEEElqLEELEQEIAALLAEAGvEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELL--EAL 425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 537 VKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQcLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMD 616
Cdd:COG4717 426 DEEELEEELEELEEELEELEEELEELREELAELEAELEQ-LEEDGELAELLQELEELKAELRELAEEWAALKLALELLEE 504
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
211-406 |
2.60e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 2.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 211 ESEDLASRLQSSRQRVGELERTLSTVSTQQKQ-------ADRYNKDLTK----ERDALKLELYKNSKSNEDLRQQNSELE 279
Cdd:COG4913 222 DTFEAADALVEHFDDLERAHEALEDAREQIELlepirelAERYAAARERlaelEYLRAALRLWFAQRRLELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 280 EKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQfssqssaAGGN------EQLQHAMEERAQLETHVSQLMESLKQLQVE 353
Cdd:COG4913 302 AELARLEAELERLEARLDALREELDELEAQIRG-------NGGDrleqleREIERLERELEERERRRARLEALLAALGLP 374
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1676440368 354 rdqyaenLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQ 406
Cdd:COG4913 375 -------LPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRE 420
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
423-854 |
4.39e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 4.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 423 EEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALS- 501
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQl 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 502 -----QNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVElksQEAQGLQEQrdqc 576
Cdd:COG4717 128 lplyqELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATE---EELQDLAEE---- 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 577 LSHLQQYAAAYQQHLaayEQLTSEKEAIHKQLllqtqlmdqlqhEEVQGKMAAELARQELQEAQERLKATS-------QE 649
Cdd:COG4717 201 LEELQQRLAELEEEL---EEAQEELEELEEEL------------EQLENELEAAALEERLKEARLLLLIAAallallgLG 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 650 NQQLQAQLSLLVLPGEGDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHL 729
Cdd:COG4717 266 GSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDR 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 730 AAPVQSKLEKEAVVPRNVDDSASEESNQAL----HVAMEKLQSRFLEVMQEKVELKERVEELEHcciQLSGETDTIGEYI 805
Cdd:COG4717 346 IEELQELLREAEELEEELQLEELEQEIAALlaeaGVEDEEELRAALEQAEEYQELKEELEELEE---QLEELLGELEELL 422
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1676440368 806 AlyQNQRAVLKARHLEKEEYISRLAQDKEEMKVKLLELQELVLRLVNER 854
Cdd:COG4717 423 E--ALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDG 469
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
370-640 |
4.79e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 4.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 370 QRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPP----AGPSEAEEQLQGEVEQLHKELERLTGQLR 445
Cdd:PRK03918 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEleelKEEIEELEKELESLEGSKRKLEEKIRELE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 446 AQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLtnenm 525
Cdd:PRK03918 266 ERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL----- 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 526 eitsalqseqhvkKELARKLGELQERLGELKETVELkSQEAQGLQEQRDQCLSHLQQYAAayQQHLAAYEQLTSEKEAIH 605
Cdd:PRK03918 341 -------------EELKKKLKELEKRLEELEERHEL-YEEAKAKKEELERLKKRLTGLTP--EKLEKELEELEKAKEEIE 404
|
250 260 270
....*....|....*....|....*....|....*
gi 1676440368 606 KQLLLQTQLMDQLQHEEVQGKMAAElarqELQEAQ 640
Cdd:PRK03918 405 EEISKITARIGELKKEIKELKKAIE----ELKKAK 435
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
202-735 |
5.67e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.26 E-value: 5.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 202 QQAARQKAGESED---LASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDAlklelyknsksNEDLRQQNSEL 278
Cdd:PRK04863 495 WDVARELLRRLREqrhLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDD-----------EDELEQLQEEL 563
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 279 EEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSS--------QSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQL 350
Cdd:PRK04863 564 EARLESLSESVSEARERRMALRQQLEQLQARIQRLAArapawlaaQDALARLREQSGEEFEDSQDVTEYMQQLLEREREL 643
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 351 QVERDQYAEN---LKGESAMWQQ-------RVQQMAEQVHTLKEEKEHRERQVQE---LETSLAALRSQMEEPPppeppa 417
Cdd:PRK04863 644 TVERDELAARkqaLDEEIERLSQpggsedpRLNALAERFGGVLLSEIYDDVSLEDapyFSALYGPARHAIVVPD------ 717
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 418 gPSEAEEQLQGEvEQLHKELERLTGQLR--------AQVQDNESLSHLNREQ-----------------EGRLLELEREA 472
Cdd:PRK04863 718 -LSDAAEQLAGL-EDCPEDLYLIEGDPDsfddsvfsVEELEKAVVVKIADRQwrysrfpevplfgraarEKRIEQLRAER 795
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 473 QRWSEQAEERKQILESMQSDRTTISRALSQN-------------RELKEQLAELQNGFVRLTNENMEITSALQSeqhvKK 539
Cdd:PRK04863 796 EELAERYATLSFDVQKLQRLHQAFSRFIGSHlavafeadpeaelRQLNRRRVELERALADHESQEQQQRSQLEQ----AK 871
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 540 ELARKLGELQERLGELKEtvELKSQEAQGLQEQRDQClshlqQYAAAY-QQHLAAYEQLtsEKEAIhkqlLLQTqlmDQL 618
Cdd:PRK04863 872 EGLSALNRLLPRLNLLAD--ETLADRVEEIREQLDEA-----EEAKRFvQQHGNALAQL--EPIVS----VLQS---DPE 935
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 619 QHEEVQGkmAAELARQELQEAQERLKATSQENQQLQAQLSLLVlpgegdvdqeeedeevpqsslaiPEDLDSREAMVAFF 698
Cdd:PRK04863 936 QFEQLKQ--DYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDA-----------------------AEMLAKNSDLNEKL 990
|
570 580 590
....*....|....*....|....*....|....*..
gi 1676440368 699 NAAIARAEEEQARLRVQLKEQKARCRSLSHLAAPVQS 735
Cdd:PRK04863 991 RQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKS 1027
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
369-575 |
6.00e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 6.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 369 QQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAgpSEAEEQLQGEVEQLHKELERLTGQLRAQV 448
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL--EAELAELEKEIAELRAELEAQKEELAELL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 449 QDNESLSHLNREQE----GRLLELEREAQRWSEQAEERKQILEsmqsdrttisralsqnrELKEQLAELQNGFVRLTNEN 524
Cdd:COG4942 111 RALYRLGRQPPLALllspEDFLDAVRRLQYLKYLAPARREQAE-----------------ELRADLAELAALRAELEAER 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1676440368 525 MEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQ 575
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
220-473 |
6.28e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.93 E-value: 6.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 220 QSSRQRVGELERTLSTVstqQKQADRYNKDLtkERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEEL 299
Cdd:COG3206 164 QNLELRREEARKALEFL---EEQLPELRKEL--EEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 300 QKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLEThvsqlmeslkQLQVERDQYAENlkgesamwQQRVQQMAEQV 379
Cdd:COG3206 239 EARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEA----------ELAELSARYTPN--------HPDVIALRAQI 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 380 HTLKEEKEHRERQV-QELETSLAALRSQmeeppppeppagpseaEEQLQGEVEQLHKELERLTgqlraqvqdneslshln 458
Cdd:COG3206 301 AALRAQLQQEAQRIlASLEAELEALQAR----------------EASLQAQLAQLEARLAELP----------------- 347
|
250
....*....|....*
gi 1676440368 459 rEQEGRLLELEREAQ 473
Cdd:COG3206 348 -ELEAELRRLEREVE 361
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
340-788 |
7.46e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 7.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 340 VSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQV---HTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPP 416
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEeeyAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 417 AGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERkqilesMQSDRTTI 496
Cdd:COG4717 128 LPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEE------LQDLAEEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 497 SRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKK--ELARKLGELQERLGELKETVELKSQEAQGLQEQRD 574
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERlkEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFL 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 575 QCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQENQQLQ 654
Cdd:COG4717 282 VLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 655 AQLSLlvlpgegdvdqeeedeevpqsslaipedlDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHLAAPVQ 734
Cdd:COG4717 362 ELQLE-----------------------------ELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLE 412
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1676440368 735 SKLEKEAVVPRNVDDSASEESNQALHVAMEKLQSRFLEVMQEKVELKERVEELE 788
Cdd:COG4717 413 ELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLE 466
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
148-560 |
8.05e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.57 E-value: 8.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 148 NQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVG 227
Cdd:PRK02224 350 DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREA 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 228 ELERTLSTVSTQQKQADRYnkdltkeRDALK-------LELYKNSKSNEDLRQQNSELEeklrvlvAEKAAAQLGVEELQ 300
Cdd:PRK02224 430 ELEATLRTARERVEEAEAL-------LEAGKcpecgqpVEGSPHVETIEEDRERVEELE-------AELEDLEEEVEEVE 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 301 KKLEMSELLlqqfssqSSAAGGNEQLQHAMEERAQL-ETHVSQLMESLKQLQVERDQyAENLKGESAMWQQRVQQMAEQV 379
Cdd:PRK02224 496 ERLERAEDL-------VEAEDRIERLEERREDLEELiAERRETIEEKRERAEELRER-AAELEAEAEEKREAAAEAEEEA 567
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 380 HTLKEEKEHRERQVQELETSLAALrsqmeeppppeppagpsEAEEQLQGEVEQLHKELERLTGQLraqvqdnESLSHLNR 459
Cdd:PRK02224 568 EEAREEVAELNSKLAELKERIESL-----------------ERIRTLLAAIADAEDEIERLREKR-------EALAELND 623
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 460 EQEGRLLEL-EREAQRWSEQAEERkqiLESMQSDRTTISRALSQN----RELKEQLAELQNgfvrltnenmEITSalqse 534
Cdd:PRK02224 624 ERRERLAEKrERKRELEAEFDEAR---IEEAREDKERAEEYLEQVeeklDELREERDDLQA----------EIGA----- 685
|
410 420
....*....|....*....|....*.
gi 1676440368 535 qhVKKELARkLGELQERLGELKETVE 560
Cdd:PRK02224 686 --VENELEE-LEELRERREALENRVE 708
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
144-560 |
8.05e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.55 E-value: 8.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 144 EKQQNQDTLDQLEKEKKDYQQKLAKEQGSLReQLQVHIQTIGILVSEKAELQTALAHTQQaarqkagESEDLASRLQSSR 223
Cdd:TIGR04523 167 QKEELENELNLLEKEKLNIQKNIDKIKNKLL-KLELLLSNLKKKIQKNKSLESQISELKK-------QNNQLKDNIEKKQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 224 QRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAaaqlgvEELQKKL 303
Cdd:TIGR04523 239 QEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE------QDWNKEL 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 304 EmSELLLQQfssqssaaggnEQLQHAMEERAQLETHVSQLMESLKQLQVERDqyaeNLKGESAMWQQRVQQMAEQVHTLK 383
Cdd:TIGR04523 313 K-SELKNQE-----------KKLEEIQNQISQNNKIISQLNEQISQLKKELT----NSESENSEKQRELEEKQNEIEKLK 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 384 EEKEHRERQVQELETSLAALRSQMEEPPppeppagpsEAEEQLQGEVEQLHKELERLTGQLraqvqdnESLSHLNREQEG 463
Cdd:TIGR04523 377 KENQSYKQEIKNLESQINDLESKIQNQE---------KLNQQKDEQIKKLQQEKELLEKEI-------ERLKETIIKNNS 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 464 RLLELEREAQRWSEQAEERKQILESMQSDRTTISRALsqnRELKEQLAELQNGFVRLTNENMEITSalqseqhVKKELAR 543
Cdd:TIGR04523 441 EIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSI---NKIKQNLEQKQKELKSKEKELKKLNE-------EKKELEE 510
|
410
....*....|....*..
gi 1676440368 544 KLGELQERLGELKETVE 560
Cdd:TIGR04523 511 KVKDLTKKISSLKEKIE 527
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
107-635 |
9.14e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.50 E-value: 9.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 107 SSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELEKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGI 186
Cdd:TIGR00618 318 SKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQS 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 187 LVSEKAELQtALAHTQQAarQKAGESEDLASRLQSSRQRVGELERtlstvSTQQKQADRYNKDLTKERDALKLELYKNSK 266
Cdd:TIGR00618 398 LCKELDILQ-REQATIDT--RTSAFRDLQGQLAHAKKQQELQQRY-----AELCAAAITCTAQCEKLEKIHLQESAQSLK 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 267 SNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQ-----LETHVS 341
Cdd:TIGR00618 470 EREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAqletsEEDVYH 549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 342 QLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSE 421
Cdd:TIGR00618 550 QLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQD 629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 422 AEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERkqileSMQSDRTTISRALS 501
Cdd:TIGR00618 630 VRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKE-----QLTYWKEMLAQCQT 704
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 502 QNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQ 581
Cdd:TIGR00618 705 LLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLA 784
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 1676440368 582 QYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQE 635
Cdd:TIGR00618 785 AEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLE 838
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
189-402 |
9.60e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 9.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 189 SEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSN 268
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 269 EDL--RQQNSELEEKLRVLVAEKAAAQLG---------VEELQKKLEMSELLLQQFSSQssaaggNEQLQHAMEERAQLE 337
Cdd:COG4942 107 AELlrALYRLGRQPPLALLLSPEDFLDAVrrlqylkylAPARREQAEELRADLAELAAL------RAELEAERAELEALL 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1676440368 338 THVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAA 402
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
240-621 |
1.03e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.50 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 240 QKQADRYNKDLTKERDALKLELYKNsksnEDLRQQNSELEEKLRVLVAEkaaaqlgVEELQKKLEMSELLLQQFSSQSSa 319
Cdd:TIGR00618 151 QGEFAQFLKAKSKEKKELLMNLFPL----DQYTQLALMEFAKKKSLHGK-------AELLTLRSQLLTLCTPCMPDTYH- 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 320 aggnEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKgesamWQQRVQQMAEQVHTLKEEKEHRERQVQELETS 399
Cdd:TIGR00618 219 ----ERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLK-----KQQLLKQLRARIEELRAQEAVLEETQERINRA 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 400 LAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELerltgQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQA 479
Cdd:TIGR00618 290 RKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLL-----MKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVA 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 480 EERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLgELKETV 559
Cdd:TIGR00618 365 TSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQ-RYAELC 443
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1676440368 560 ELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHE 621
Cdd:TIGR00618 444 AAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCP 505
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
141-649 |
1.13e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 141 KELEKQQNQdtLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQ 220
Cdd:pfam02463 328 KELKKEKEE--IEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEK 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 221 SSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQ 300
Cdd:pfam02463 406 EAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQ 485
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 301 KKLEMSELLLQQFSSQSSAAGGNEQLqhameERAQLETHVSQLmesLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVH 380
Cdd:pfam02463 486 LELLLSRQKLEERSQKESKARSGLKV-----LLALIKDGVGGR---IISAHGRLGDLGVAVENYKVAISTAVIVEVSATA 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 381 TLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNRE 460
Cdd:pfam02463 558 DEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKL 637
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 461 QEgRLLELEREAQRWSEQAEERkqileSMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKE 540
Cdd:pfam02463 638 KE-SAKAKESGLRKGVSLEEGL-----AEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEE 711
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 541 LARKLGELQERLGELKETVELKSQEAQGLQEQR-------DQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQ 613
Cdd:pfam02463 712 LKKLKLEAEELLADRVQEAQDKINEELKLLKQKideeeeeEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEE 791
|
490 500 510
....*....|....*....|....*....|....*.
gi 1676440368 614 LMDQLQHEEVQGKMAAELARQELQEAQERLKATSQE 649
Cdd:pfam02463 792 KEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQE 827
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
192-575 |
1.67e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 192 AELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDL 271
Cdd:PRK02224 233 RETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAV 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 272 RQQNSELEEKLrvlvaekaaaqlgvEELQKKLEMSELLLQQFSSQSSAAGGN-----EQLQHAMEERAQLETHVSQLMES 346
Cdd:PRK02224 313 EARREELEDRD--------------EELRDRLEECRVAAQAHNEEAESLREDaddleERAEELREEAAELESELEEAREA 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 347 LKQLQVER---DQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAE 423
Cdd:PRK02224 379 VEDRREEIeelEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECG 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 424 EQLQG--------EVEQLHKELERLTGQLRAQVQDNEslSHLNREQEgrLLELEREAQRWSEQAEERKQILEsmqSDRTT 495
Cdd:PRK02224 459 QPVEGsphvetieEDRERVEELEAELEDLEEEVEEVE--ERLERAED--LVEAEDRIERLEERREDLEELIA---ERRET 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 496 ISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKS------QEAQGL 569
Cdd:PRK02224 532 IEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAaiadaeDEIERL 611
|
....*.
gi 1676440368 570 QEQRDQ 575
Cdd:PRK02224 612 REKREA 617
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
146-618 |
2.29e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 2.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 146 QQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAE--LQTALAHTQQAARQKAGESEDLASR-LQSS 222
Cdd:TIGR00618 385 QQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQqeLQQRYAELCAAAITCTAQCEKLEKIhLQES 464
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 223 RQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLE--LYKNSKSNEDLRQQNSELEEKL--RVLVAEKAAAQLGVEE 298
Cdd:TIGR00618 465 AQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEpcPLCGSCIHPNPARQDIDNPGPLtrRMQRGEQTYAQLETSE 544
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 299 LQKKLEMSELLLQQFSSQSSAaggnEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMW--QQRVQQMA 376
Cdd:TIGR00618 545 EDVYHQLTSERKQRASLKEQM----QEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLacEQHALLRK 620
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 377 EQVHTLKEEKEHRERQVQE----LETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNE 452
Cdd:TIGR00618 621 LQPEQDLQDVRLHLQQCSQelalKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLA 700
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 453 SLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRE--LKEQLAELQNGFVRLTNENMEITSA 530
Cdd:TIGR00618 701 QCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARtvLKARTEAHFNNNEEVTAALQTGAEL 780
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 531 LQSEQHVKK----------ELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSE 600
Cdd:TIGR00618 781 SHLAAEIQFfnrlreedthLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQ 860
|
490
....*....|....*...
gi 1676440368 601 KEAIHKQLLLQTQLMDQL 618
Cdd:TIGR00618 861 LAQLTQEQAKIIQLSDKL 878
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
138-515 |
2.42e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 2.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 138 SNMKELEKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQ---TIGILVSEKAELQTALAHTQQAARQKAGESED 214
Cdd:TIGR04523 295 SEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQlneQISQLKKELTNSESENSEKQRELEEKQNEIEK 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 215 LASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQL 294
Cdd:TIGR04523 375 LKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKEL 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 295 GVEELQKKLEMSELLLQQFSSQSsaaggNEQLQHAMEERAQLETHVSQLmESLKQLQVERDQYAENLKGESAMWQQRVQQ 374
Cdd:TIGR04523 455 IIKNLDNTRESLETQLKVLSRSI-----NKIKQNLEQKQKELKSKEKEL-KKLNEEKKELEEKVKDLTKKISSLKEKIEK 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 375 maeqvhtLKEEKEHRERQVQELETSLAALRSQMEEppppeppagpseaeEQLQGEVEQLHKELERLTgqlraqvQDNESL 454
Cdd:TIGR04523 529 -------LESEKKEKESKISDLEDELNKDDFELKK--------------ENLEKEIDEKNKEIEELK-------QTQKSL 580
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1676440368 455 SHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDrttISRALSQNRELKEQLAELQN 515
Cdd:TIGR04523 581 KKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE---LEKAKKENEKLSSIIKNIKS 638
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
248-564 |
2.65e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 2.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 248 KDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRV----------LVAEKAAAQLGVEELQK-KLEMSELLLQQFSSQ 316
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREineisselpeLREELEKLEKEVKELEElKEEIEELEKELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 317 SSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLqverdqyaENLKGEsamwqqrvqqmAEQVHTLKEEKEHRERQVQEL 396
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKEL--------KELKEK-----------AEEYIKLSEFYEEYLDELREI 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 397 ETSLAALRSQMEEPPPPEPPAGPSEAE-EQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNR-EQEGRLLELEREAQR 474
Cdd:PRK03918 313 EKRLSRLEEEINGIEERIKELEEKEERlEELKKKLKELEKRLEELEERHELYEEAKAKKEELERlKKRLTGLTPEKLEKE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 475 WSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITsalqsEQHVKKELARKLGELQERLGE 554
Cdd:PRK03918 393 LEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELT-----EEHRKELLEEYTAELKRIEKE 467
|
330
....*....|
gi 1676440368 555 LKETVELKSQ 564
Cdd:PRK03918 468 LKEIEEKERK 477
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
192-513 |
2.68e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 2.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 192 AELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQAdrynkDLTKERDALKLELYKNSKSNEDL 271
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVA-----SAEREIAELEAELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 272 R---QQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLqhamEERAQLETHVSQLMESLK 348
Cdd:COG4913 688 AaleEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL----ELRALLEERFAAALGDAV 763
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 349 QLQVeRDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRerqVQELETSLAALRSQMEEPPPPEPPAGPsEAEEQLQG 428
Cdd:COG4913 764 EREL-RENLEERIDALRARLNRAEEELERAMRAFNREWPAE---TADLDADLESLPEYLALLDRLEEDGLP-EYEERFKE 838
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 429 EV-EQLHKELERLTGQLRAQVQD--------NESLSHLnREQEGRLLELEREAQRwSEQAEERKQILESMQSDRTTISRA 499
Cdd:COG4913 839 LLnENSIEFVADLLSKLRRAIREikeridplNDSLKRI-PFGPGRYLRLEARPRP-DPEVREFRQELRAVTSGASLFDEE 916
|
330
....*....|....
gi 1676440368 500 LSQNRElkEQLAEL 513
Cdd:COG4913 917 LSEARF--AALKRL 928
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
211-824 |
3.25e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 3.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 211 ESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRynkdlTKERDALKLELYKNSKSN-EDLRQQNSELEEKLRVLVAEK 289
Cdd:PRK02224 200 EEKDLHERLNGLESELAELDEEIERYEEQREQARE-----TRDEADEVLEEHEERREElETLEAEIEDLRETIAETERER 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 290 AAAQLGVEELQKKLEmsELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQY---AENLKGESA 366
Cdd:PRK02224 275 EELAEEVRDLRERLE--ELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHneeAESLREDAD 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 367 MWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGpsEAEEQLQGEVEQLHKELERLTGQLRA 446
Cdd:PRK02224 353 DLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAP--VDLGNAEDFLEELREERDELREREAE 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 447 QVQDNESLShlNREQEGRLLeleREAQRWSE--QAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNen 524
Cdd:PRK02224 431 LEATLRTAR--ERVEEAEAL---LEAGKCPEcgQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAED-- 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 525 meitsalqseqhvKKELARKLGELQERLgelKETVELKSQEAQGLQEQRDQClshlqqyaaayqqhlaayEQLTSEKeai 604
Cdd:PRK02224 504 -------------LVEAEDRIERLEERR---EDLEELIAERRETIEEKRERA------------------EELRERA--- 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 605 hkqlllqtqlmDQLQHEEVQGKMAAELARQELQEAQERLKATSQENQqlqaqlsllvlpgegdvdqeeedeevpqsslAI 684
Cdd:PRK02224 547 -----------AELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLA-------------------------------EL 584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 685 PEDLDSREAMVAFFnAAIARAEEEQARLRVQLKEQKARCR-SLSHLAAPVQSKLEKEAVVPRNVDDSASEESNQA----- 758
Cdd:PRK02224 585 KERIESLERIRTLL-AAIADAEDEIERLREKREALAELNDeRRERLAEKRERKRELEAEFDEARIEEAREDKERAeeyle 663
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1676440368 759 --------LHVAMEKLQSRFLEV---MQEKVELKERVEELEHCCIQLSGETDTIGEYIALYQNQRAVLKARHLEKEE 824
Cdd:PRK02224 664 qveekldeLREERDDLQAEIGAVeneLEELEELRERREALENRVEALEALYDEAEELESMYGDLRAELRQRNVETLE 740
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
142-362 |
3.31e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 3.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 142 ELEKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHI-----QTIGILVSEKAELQTALAHTQQAARQKAGESEDLA 216
Cdd:COG3206 167 ELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGlvdlsEEAKLLLQQLSELESQLAEARAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 217 SRLQSSRQRVGELERTLSTVSTQQKQAdrynkDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAE-KAAAQLG 295
Cdd:COG3206 247 AQLGSGPDALPELLQSPVIQQLRAQLA-----ELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRiLASLEAE 321
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1676440368 296 VEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHV-SQLMESLKQLQVERDQYAENLK 362
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELyESLLQRLEEARLAEALTVGNVR 389
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
140-406 |
3.94e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 3.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 140 MKELEKQQNQ--DTLDQLEKEKKDYQQKL--AKEQGSLREQLQ---------VHIQTIGILVSEKAELQTALAHTQQAAR 206
Cdd:COG3096 838 LAALRQRRSEleRELAQHRAQEQQLRQQLdqLKEQLQLLNKLLpqanlladeTLADRLEELREELDAAQEAQAFIQQHGK 917
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 207 QkAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSksnEDLRQQNSELEEKLR--V 284
Cdd:COG3096 918 A-LAQLEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHFSYEDA---VGLLGENSDLNEKLRarL 993
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 285 LVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESlkQLQVERDQyaenLKGE 364
Cdd:COG3096 994 EQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEELGVQADAEAEE--RARIRRDE----LHEE 1067
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1676440368 365 SAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQ 406
Cdd:COG3096 1068 LSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQ 1109
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
423-649 |
4.62e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 4.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 423 EEQLQGEVEQLHKELERLTGQL---RAQVqdneslshlnREQEGRLLELeREAQRWSEQAEERKQILESMQSDRTTISRA 499
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLpelRKEL----------EEAEAALEEF-RQKNGLVDLSEEAKLLLQQLSELESQLAEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 500 LSQNRELKEQLAELQNgfvRLTNENMEITSALQSEqhVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSH 579
Cdd:COG3206 232 RAELAEAEARLAALRA---QLGSGPDALPELLQSP--VIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQ 306
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1676440368 580 LQQYAAAYQQHL-AAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMA---AELARQELQEAQERLKATSQE 649
Cdd:COG3206 307 LQQEAQRILASLeAELEALQAREASLQAQLAQLEARLAELPELEAELRRLereVEVARELYESLLQRLEEARLA 380
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
207-649 |
4.88e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.94 E-value: 4.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 207 QKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSN----EDLR-------QQN 275
Cdd:pfam05483 251 EKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQkaleEDLQiatkticQLT 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 276 SELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQqfSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERD 355
Cdd:pfam05483 331 EEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLR--TEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELE 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 356 QYAENLKGESAMW--QQRVQQMAEQVHTLKEE----KEHRERQVQELETSLAALRSqmeeppppeppagpseAEEQLQGE 429
Cdd:pfam05483 409 ELKKILAEDEKLLdeKKQFEKIAEELKGKEQEliflLQAREKEIHDLEIQLTAIKT----------------SEEHYLKE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 430 VEQLHKELErltgqlRAQVQDNESLSHLNReqegRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQ 509
Cdd:pfam05483 473 VEDLKTELE------KEKLKNIELTAHCDK----LLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEK 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 510 LAELQNGFVRLTNENMEITSALQSEQHVKKELAR-----------KLGELQERLGELKETVELKSQEAQGLQEQRDQcls 578
Cdd:pfam05483 543 EMNLRDELESVREEFIQKGDEVKCKLDKSEENARsieyevlkkekQMKILENKCNNLKKQIENKNKNIEELHQENKA--- 619
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1676440368 579 hLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAElarQELQEAQERLKATSQE 649
Cdd:pfam05483 620 -LKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISE---EKLLEEVEKAKAIADE 686
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
420-633 |
7.32e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 7.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 420 SEAEEQLQGEVEQLHKELERLTGQLRAQVQDN-------------ESLSHLNREQ---EGRLLELEREAQRWSEQAEERK 483
Cdd:COG3206 174 RKALEFLEEQLPELRKELEEAEAALEEFRQKNglvdlseeaklllQQLSELESQLaeaRAELAEAEARLAALRAQLGSGP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 484 QILESMQSDrTTISRALSQNRELKEQLAELQNgfvRLTNENMEITSALQSEQHVKKELARklgELQERLGELKETVELKS 563
Cdd:COG3206 254 DALPELLQS-PVIQQLRAQLAELEAELAELSA---RYTPNHPDVIALRAQIAALRAQLQQ---EAQRILASLEAELEALQ 326
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 564 QEAQGLQEQRDQclshLQQYAAAYQQHLAAYEQLTSEKEAIHKQLllqTQLMDQLQHEEVQGKMAAELAR 633
Cdd:COG3206 327 AREASLQAQLAQ----LEARLAELPELEAELRRLEREVEVARELY---ESLLQRLEEARLAEALTVGNVR 389
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
257-618 |
8.36e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.50 E-value: 8.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 257 LKLELyKNSKSNEDLRQQNS--ELEEKLRVLVAEKAAAQlGVEELQKKLE----MSELLLQQFSSQSSAAGGNEQLQHAM 330
Cdd:PRK10929 28 ITQEL-EQAKAAKTPAQAEIveALQSALNWLEERKGSLE-RAKQYQQVIDnfpkLSAELRQQLNNERDEPRSVPPNMSTD 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 331 EERAQLETHVSQLMESLKQLQVERDqyaenlkgesamwqqRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEP 410
Cdd:PRK10929 106 ALEQEILQVSSQLLEKSRQAQQEQD---------------RAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 411 PPPEPPAGPSEAE------EQLqgEVEQL----HKELERLTG--------QLRAQVQDNESLSHLNREQEGRlLELEREA 472
Cdd:PRK10929 171 AQAQLTALQAESAalkalvDEL--ELAQLsannRQELARLRSelakkrsqQLDAYLQALRNQLNSQRQREAE-RALESTE 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 473 QRWSEQAEERKQILESMQSDRtTISRALSQNRELKEQLAELQNgfvRLTNENMEITSALQS--EQHVKKELARKLGE-LQ 549
Cdd:PRK10929 248 LLAEQSGDLPKSIVAQFKINR-ELSQALNQQAQRMDLIASQQR---QAASQTLQVRQALNTlrEQSQWLGVSNALGEaLR 323
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1676440368 550 ---ERLGELKETVELKSQEAQgLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAI-HKQLLLQTQLMDQL 618
Cdd:PRK10929 324 aqvARLPEMPKPQQLDTEMAQ-LRVQRLRYEDLLNKQPQLRQIRQADGQPLTAEQNRIlDAQLRTQRELLNSL 395
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
233-554 |
9.07e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 43.02 E-value: 9.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 233 LSTVSTQQKQADryNKDLTKERDALKLELYKNSKSNEDLRQQN-SELEEKLRVLVAEKAAAQLGVEELQKKLEMSElllQ 311
Cdd:COG5185 229 INIEEALKGFQD--PESELEDLAQTSDKLEKLVEQNTDLRLEKlGENAESSKRLNENANNLIKQFENTKEKIAEYT---K 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 312 QFSSQSSAAGGNEQLQhAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGEsamwQQRVQQMAEQVHTLkEEKEHRER 391
Cdd:COG5185 304 SIDIKKATESLEEQLA-AAEAEQELEESKRETETGIQNLTAEIEQGQESLTEN----LEAIKEEIENIVGE-VELSKSSE 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 392 QVQELETSLAALRSQMEEPPPPEPPAGPsEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELERE 471
Cdd:COG5185 378 ELDSFKDTIESTKESLDEIPQNQRGYAQ-EILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMRE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 472 AQ--RWSEQAEERKQILESMQSDRTTISRALSQ-NRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGEL 548
Cdd:COG5185 457 ADeeSQSRLEEAYDEINRSVRSKKEDLNEELTQiESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAESLKDFMRARGYA 536
|
....*.
gi 1676440368 549 QERLGE 554
Cdd:COG5185 537 HILALE 542
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
317-513 |
9.13e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 9.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 317 SSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGEsamwQQRVQQMAEQVHTLKEEKEHRERQVQEL 396
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL----ERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 397 ETSLAALRSQMEEPPPPEPP--------------------AGPSEAE---EQLQGEVEQLHKELERLTGQLRAQVQDNES 453
Cdd:COG4942 89 EKEIAELRAELEAQKEELAEllralyrlgrqpplalllspEDFLDAVrrlQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 454 LSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAEL 513
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
139-618 |
9.34e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.03 E-value: 9.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 139 NMKELEKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQA--ARQKAGESEDLA 216
Cdd:TIGR00618 197 ELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLkqLRARIEELRAQE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 217 SRLQSSRQRVgELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSK---SNEDLRQQNSELEEKLRVLVAEKAAAq 293
Cdd:TIGR00618 277 AVLEETQERI-NRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKllmKRAAHVKQQSSIEEQRRLLQTLHSQE- 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 294 lgvEELQKKLEMSELLLQQFSSQSSaaggneqLQHAMEERAQLETHVSQLMESLKQLQVERDqyAENLKGESAMWQQRVQ 373
Cdd:TIGR00618 355 ---IHIRDAHEVATSIREISCQQHT-------LTQHIHTLQQQKTTLTQKLQSLCKELDILQ--REQATIDTRTSAFRDL 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 374 QmAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERlTGQLRAQVQdnES 453
Cdd:TIGR00618 423 Q-GQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETR-KKAVVLARL--LE 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 454 LSHLNREQEGRLLELEREAQ----------RWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLT-- 521
Cdd:TIGR00618 499 LQEEPCPLCGSCIHPNPARQdidnpgpltrRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTqc 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 522 -NENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRdqclSHLQQYAAAYQQHLAAYE--QLT 598
Cdd:TIGR00618 579 dNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVR----LHLQQCSQELALKLTALHalQLT 654
|
490 500
....*....|....*....|
gi 1676440368 599 SEKEAIHKQLLLQTQLMDQL 618
Cdd:TIGR00618 655 LTQERVREHALSIRVLPKEL 674
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
143-502 |
9.77e-04 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 43.03 E-value: 9.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 143 LEKQQNQDTLDQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSS 222
Cdd:COG4995 98 LAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALALALAAAAL 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 223 RQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKK 302
Cdd:COG4995 178 ALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAAAALAAAAAAL 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 303 LEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTL 382
Cdd:COG4995 258 LALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLLLAALALLALLL 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 383 KEEKEHRERQVQELETSLAALRSQmeepPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQE 462
Cdd:COG4995 338 LLAAAALLAAALAAALALAAALAL----ALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAAAQLLRLLL 413
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1676440368 463 GRLLELEREAQRWSEQAEERKQILESMQSDRTTISRALSQ 502
Cdd:COG4995 414 AALALLLALAAYAAARLALLALIEYIILPDRLYAFVQLYQ 453
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
139-845 |
9.87e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.24 E-value: 9.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 139 NMKELEKQQNQDTLDQLEKEKKDYQQK---LAKEQGSLREQLQVHIQtigiLVSEKAELQTALAHTQQAARQ-------K 208
Cdd:pfam01576 8 QAKEEELQKVKERQQKAESELKELEKKhqqLCEEKNALQEQLQAETE----LCAEAEEMRARLAARKQELEEilhelesR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 209 AGESEDLASRLQSSR----QRVGELERTLST--VSTQQKQADRYNKDL---TKERDALKLELYKNSKSNE---------D 270
Cdd:pfam01576 84 LEEEEERSQQLQNEKkkmqQHIQDLEEQLDEeeAARQKLQLEKVTTEAkikKLEEDILLLEDQNSKLSKErklleerisE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 271 LRQQNSELEEKLRVLVAEKAAAQLGVEELQ---KKLEMSELLLQQFSSQSSAAGGNEQLQHAmEERAQLETHVSQLMESL 347
Cdd:pfam01576 164 FTSNLAEEEEKAKSLSKLKNKHEAMISDLEerlKKEEKGRQELEKAKRKLEGESTDLQEQIA-ELQAQIAELRAQLAKKE 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 348 KQLQVERDQYAENLKGESAMwQQRVQQMAEQVHTLKEEKEHR-------ERQVQELETSLAALRSQMeePPPPEPPAGPS 420
Cdd:pfam01576 243 EELQAALARLEEETAQKNNA-LKKIRELEAQISELQEDLESEraarnkaEKQRRDLGEELEALKTEL--EDTLDTTAAQQ 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 421 EAEEQLQGEVEQLHKELERLTGQLRAQVQDnesLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTISRAL 500
Cdd:pfam01576 320 ELRSKREQEVTELKKALEEETRSHEAQLQE---MRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTL 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 501 SQNRELKEQLAELQNGFVRltnenmEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHL 580
Cdd:pfam01576 397 QQAKQDSEHKRKKLEGQLQ------ELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQL 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 581 QQYAAAYQQHLAAYEQLTSEKEAIHKQlllQTQLMDQLQhEEVQGKMAAELARQELQEAQERLKATSQENQqlqaqlsll 660
Cdd:pfam01576 471 QDTQELLQEETRQKLNLSTRLRQLEDE---RNSLQEQLE-EEEEAKRNVERQLSTLQAQLSDMKKKLEEDA--------- 537
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 661 vlpgEGDVDQEEEDEEVPQSSLAIPEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHlaapVQSKLEKE 740
Cdd:pfam01576 538 ----GTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEK----KQKKFDQM 609
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 741 AVVPRNVDDSASEESNQALHVAMEKlQSRFLEVMQEKVELKERVEELEHCCIQLSGETDtigeyiALYQNQRAVLKARHl 820
Cdd:pfam01576 610 LAEEKAISARYAEERDRAEAEAREK-ETRALSLARALEEALEAKEELERTNKQLRAEME------DLVSSKDDVGKNVH- 681
|
730 740
....*....|....*....|....*
gi 1676440368 821 EKEEYISRLAQDKEEMKVKLLELQE 845
Cdd:pfam01576 682 ELERSKRALEQQVEEMKTQLEELED 706
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
472-649 |
1.40e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 472 AQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQER 551
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 552 LGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAEL 631
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170
....*....|....*...
gi 1676440368 632 ARQELQEAQERLKATSQE 649
Cdd:COG4942 179 LLAELEEERAALEALKAE 196
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
369-593 |
1.73e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 369 QQRVQQMAEQVHTLKEEKEHRER------QVQELETSLAALRSQMEEPPPPEPPagpsEAEEQLQGEVEQLHKELERLTG 442
Cdd:COG4913 241 HEALEDAREQIELLEPIRELAERyaaareRLAELEYLRAALRLWFAQRRLELLE----AELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 443 QLRAQVQDNESLSHLNREQEGRLLE-LEREAQRWSEQAEERKQilesmqsdrttisralsqnrelkeQLAELQNGFVRLT 521
Cdd:COG4913 317 RLDALREELDELEAQIRGNGGDRLEqLEREIERLERELEERER------------------------RRARLEALLAALG 372
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1676440368 522 NENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQHLAA 593
Cdd:COG4913 373 LPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLA 444
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
101-347 |
1.85e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 42.35 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 101 EETKTFSSTESLRQLSQQL---NGLVSESTSYINGEGLTSSNMKE-------LEKQQNQDTLDQLEKEK--KDYQQKLAK 168
Cdd:PRK10929 128 EQDRAREISDSLSQLPQQQteaRRQLNEIERRLQTLGTPNTPLAQaqltalqAESAALKALVDELELAQlsANNRQELAR 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 169 EQGSL----REQLQVHIQ----TIGILVSEKAELqtALAHTQQAARQKAGESEDLASRLQSSRQRVGELE---RTLSTVS 237
Cdd:PRK10929 208 LRSELakkrSQQLDAYLQalrnQLNSQRQREAER--ALESTELLAEQSGDLPKSIVAQFKINRELSQALNqqaQRMDLIA 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 238 TQQKQADrynKDLTKERDALKlELYKNSK----SN---EDLRQQNSELEEKLRVLVAEKAAAQLGVeelqKKLEMSELLL 310
Cdd:PRK10929 286 SQQRQAA---SQTLQVRQALN-TLREQSQwlgvSNalgEALRAQVARLPEMPKPQQLDTEMAQLRV----QRLRYEDLLN 357
|
250 260 270
....*....|....*....|....*....|....*....
gi 1676440368 311 QQFSSQSSAAGGNEQLQHAMEE--RAQLETHvSQLMESL 347
Cdd:PRK10929 358 KQPQLRQIRQADGQPLTAEQNRilDAQLRTQ-RELLNSL 395
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
424-740 |
1.88e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 424 EQLQGEVEQLHKELERLTGQLRAQVQDNESLSHlNREQEGRLLELEREAQRWseqaeERKQILESMQSDRTTISRALSQN 503
Cdd:TIGR02169 173 EKALEELEEVEENIERLDLIIDEKRQQLERLRR-EREKAERYQALLKEKREY-----EGYELLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 504 RELKEQLAELQngfVRLTNENMEITSALQSEQHVKKELARKLGELQERLGElkETVELKSQEAQgLQEQRDQCLSHLQQY 583
Cdd:TIGR02169 247 ASLEEELEKLT---EEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE--KIGELEAEIAS-LERSIAEKERELEDA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 584 AAAYQQHLAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMAAELARQELQEAQERLKATSQENQQLQAQLSLLVLP 663
Cdd:TIGR02169 321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE 400
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1676440368 664 GEGDVDQEEEDEevpqsslaipEDLDSREAMVAFFNAAIARAEEEQARLRVQLKEQKARCRSLSHLAAPVQSKLEKE 740
Cdd:TIGR02169 401 INELKRELDRLQ----------EELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
219-483 |
2.66e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 219 LQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDAL-KLELYKNSKSNEDLRQQNSELEEKL-RVLVAEKAAAQLGV 296
Cdd:PRK04863 839 LRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALnRLLPRLNLLADETLADRVEEIREQLdEAEEAKRFVQQHGN 918
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 297 -------------------EELQKKLEMSELLLQQFSSQSSA---------AGGNEQLQHAMEERAQLethVSQLMESLK 348
Cdd:PRK04863 919 alaqlepivsvlqsdpeqfEQLKQDYQQAQQTQRDAKQQAFAltevvqrraHFSYEDAAEMLAKNSDL---NEKLRQRLE 995
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 349 QLQVERDQYAENLKGEsamwQQRVQQmAEQVHT-LKEEKEHRERQVQELETSLAALRSQmeeppppeppaGPSEAEEQLQ 427
Cdd:PRK04863 996 QAEQERTRAREQLRQA----QAQLAQ-YNQVLAsLKSSYDAKRQMLQELKQELQDLGVP-----------ADSGAEERAR 1059
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1676440368 428 GEVEQLHKELeRLTGQLRAQVQDNESLSHLN-REQEGRLLELEREAQRWSEQAEERK 483
Cdd:PRK04863 1060 ARRDELHARL-SANRSRRNQLEKQLTFCEAEmDNLTKKLRKLERDYHEMREQVVNAK 1115
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
215-573 |
4.19e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.16 E-value: 4.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 215 LASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQL 294
Cdd:TIGR04523 108 INSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQK 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 295 GVEELQKKLEMSELLLQQFSSQSSAAGG-NEQLQHAMEERAQLETHVSQLMESLKQLQVE---RDQYAENLKGESAMWQQ 370
Cdd:TIGR04523 188 NIDKIKNKLLKLELLLSNLKKKIQKNKSlESQISELKKQNNQLKDNIEKKQQEINEKTTEisnTQTQLNQLKDEQNKIKK 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 371 RVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEeppppeppagpSEAEEQLQGEVEQLHKELERLTGQLRaqvQD 450
Cdd:TIGR04523 268 QLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE-----------QDWNKELKSELKNQEKKLEEIQNQIS---QN 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 451 NESLSHLNreqegrllelereaqrwseqaeerkqilESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSA 530
Cdd:TIGR04523 334 NKIISQLN----------------------------EQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQE 385
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1676440368 531 LQSEQHVKKELARKL-------GELQERLGELKETVELKSQEAQGLQEQR 573
Cdd:TIGR04523 386 IKNLESQINDLESKIqnqeklnQQKDEQIKKLQQEKELLEKEIERLKETI 435
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
130-649 |
4.43e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.05 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 130 INGEGLTSSNMKELEK--QQNQDTLDQLEKEKKD---YQQKLAKEQGSLREQlqvhiqtigilvseKAELQTALAHTQQA 204
Cdd:PRK11281 48 LNKQKLLEAEDKLVQQdlEQTLALLDKIDRQKEEteqLKQQLAQAPAKLRQA--------------QAELEALKDDNDEE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 205 ARQK-AGES-EDLASRLQSSRQRVGELERTLST----VSTQQKQADRYNKdltkerdalklELYKNSKSNEDLRQQnsel 278
Cdd:PRK11281 114 TRETlSTLSlRQLESRLAQTLDQLQNAQNDLAEynsqLVSLQTQPERAQA-----------ALYANSQRLQQIRNL---- 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 279 eeklrvLVAEKAAAQLGVEELQKKLEMSELLL-QQFSSQSSAAGGNEQLQhameeraqlethvsqlmeSLKQLQVErdqy 357
Cdd:PRK11281 179 ------LKGGKVGGKALRPSQRVLLQAEQALLnAQNDLQRKSLEGNTQLQ------------------DLLQKQRD---- 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 358 aenlkgESAMWQQRVQQMAEQVHTLKEEK--EHRERQVQELETSLAALRSQmeeppppeppagpseaEEQLqgeveqLHK 435
Cdd:PRK11281 231 ------YLTARIQRLEHQLQLLQEAINSKrlTLSEKTVQEAQSQDEAARIQ----------------ANPL------VAQ 282
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 436 ELERltgqlraqvqdneslshlNREQEGRLLELEREAQRWSEQAEERKQILESM-QSDRTtisralsqnreLKEQLAELQ 514
Cdd:PRK11281 283 ELEI------------------NLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLtQSERN-----------IKEQISVLK 333
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 515 NGFVrltnenmeitsalqseqhvkkeLARKLGELQERLGELKETVELKSQEAQ------GLQEQRDQcLSHLQQYAAAYQ 588
Cdd:PRK11281 334 GSLL----------------------LSRILYQQQQALPSADLIEGLADRIADlrleqfEINQQRDA-LFQPDAYIDKLE 390
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1676440368 589 QHlaayeQLTSEKEAIHKQL--LLQT--QLMDQLQHEEVQGKMAA---ELARQELQEAQERLKATSQE 649
Cdd:PRK11281 391 AG-----HKSEVTDEVRDALlqLLDErrELLDQLNKQLNNQLNLAinlQLNQQQLLSVSDSLQSTLTQ 453
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
144-349 |
4.54e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 4.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 144 EKQQNQDTLDQLEKEKKDYQQKLA---KEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQaarQKAGESEDLASRLQ 220
Cdd:COG4942 35 EIAELEKELAALKKEEKALLKQLAaleRRIAALARRIRALEQELAALEAELAELEKEIAELRA---ELEAQKEELAELLR 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 221 SSrQRVGELERTLSTVSTQQ-KQADR---YNKDLTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQlgv 296
Cdd:COG4942 112 AL-YRLGRQPPLALLLSPEDfLDAVRrlqYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEER--- 187
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1676440368 297 EELQKKLEMSELLLQQFSSQSSAAggNEQLQHAMEERAQLETHVSQLMESLKQ 349
Cdd:COG4942 188 AALEALKAERQKLLARLEKELAEL--AAELAELQQEAEELEALIARLEAEAAA 238
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
173-618 |
5.10e-03 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 40.72 E-value: 5.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 173 LREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTK 252
Cdd:COG4995 8 ALLAALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALAL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 253 ERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEE 332
Cdd:COG4995 88 ALLAAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 333 RAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEEPPP 412
Cdd:COG4995 168 LALALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAA 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 413 PEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQRWSEQAEERKQILESMQSD 492
Cdd:COG4995 248 AALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLLL 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 493 RTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQ 572
Cdd:COG4995 328 AALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAAAQ 407
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 1676440368 573 RDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIH--KQLLLQTQLMDQL 618
Cdd:COG4995 408 LLRLLLAALALLLALAAYAAARLALLALIEYIIlpDRLYAFVQLYQLL 455
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
149-426 |
5.94e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 5.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 149 QDTLDQLEKEKKDYQQKLAKEQGSLREQLQvhiqtigilvsEKAELQTALAHTQQAARQkagesedLASRLQSSRQRVGE 228
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKK-----------EEKALLKQLAALERRIAA-------LARRIRALEQELAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 229 LERTLSTVSTQQKQAdryNKDLTKERDALKLELYKNSKSNEdlrqqnselEEKLRVLVAEKAAAQlgveelqkkLEMSEL 308
Cdd:COG4942 81 LEAELAELEKEIAEL---RAELEAQKEELAELLRALYRLGR---------QPPLALLLSPEDFLD---------AVRRLQ 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 309 LLQQFSSQSSAAGgnEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEH 388
Cdd:COG4942 140 YLKYLAPARREQA--EELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAE 217
|
250 260 270
....*....|....*....|....*....|....*...
gi 1676440368 389 RERQVQELETSLAALRSQMEEPPPPEPPAGPSEAEEQL 426
Cdd:COG4942 218 LQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKL 255
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
153-512 |
6.02e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 40.58 E-value: 6.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 153 DQLEKEKKDYQQKLAKEQGSLREQLQVHIQTIGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQRVGELERT 232
Cdd:pfam10174 358 ESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTA 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 233 LSTVSTQQKQADRYNKDLTKERDALKLELYKNSksnEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQK----------- 301
Cdd:pfam10174 438 LTTLEEALSEKERIIERLKEQREREDRERLEEL---ESLKKENKDLKEKVSALQPELTEKESSLIDLKEhasslassglk 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 302 ---KLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSqlmESLKQLQVERDQYAEnlkgESAMWQQRVQQMAEQ 378
Cdd:pfam10174 515 kdsKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEIN---DRIRLLEQEVARYKE----ESGKAQAEVERLLGI 587
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 379 VHTLKEEKEHRERQVQELEtSLAALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKElerltgqlraqvQDNESLSHLN 458
Cdd:pfam10174 588 LREVENEKNDKDKKIAELE-SLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRR------------EDNLADNSQQ 654
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1676440368 459 REQEGRLLELEREAQrwseQAEERKQILESMQSDRTTISRALSQNR-ELKEQLAE 512
Cdd:pfam10174 655 LQLEELMGALEKTRQ----ELDATKARLSSTQQSLAEKDGHLTNLRaERRKQLEE 705
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
110-571 |
6.23e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.42 E-value: 6.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 110 ESLRQLSQQLNGLVSESTSYINGEGLTSSNMKELEKQQNQDTLDQLEKEKKDYQQKLAKEQGSLR------EQLQVHIQT 183
Cdd:TIGR00606 454 EELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRkldqemEQLNHHTTT 533
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 184 IGILVSEKAELQTALAHTQQAARQKAGESEDLASRLQSSRQrvgeLERTLSTVSTQQKQADRYNKDLTKERDALKLELYK 263
Cdd:TIGR00606 534 RTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQ----LEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNH 609
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 264 NSKSNEDLRQQNSELEEKLrVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSS------------AAGGNEQLQHAME 331
Cdd:TIGR00606 610 INNELESKEEQLSSYEDKL-FDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAvysqfitqltdeNQSCCPVCQRVFQ 688
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 332 ERAQLETHVSQL----------MESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETSLA 401
Cdd:TIGR00606 689 TEAELQEFISDLqsklrlapdkLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIE 768
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 402 ALRSQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDneslshlnreqegrlLELEREAQRWSEQAEE 481
Cdd:TIGR00606 769 EQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQG---------------SDLDRTVQQVNQEKQE 833
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 482 RKQILESMQSdRTTISRALSQNRElkEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVEL 561
Cdd:TIGR00606 834 KQHELDTVVS-KIELNRKLIQDQQ--EQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQ 910
|
490
....*....|
gi 1676440368 562 KSQEAQGLQE 571
Cdd:TIGR00606 911 DSPLETFLEK 920
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
200-644 |
7.10e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.49 E-value: 7.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 200 HTQQAARQKAGESEDLASRLQSSRQRVGELERTL--STVSTQQKQadrynKDLTKERDALKLELYKNSKSNEDLRQQ--- 274
Cdd:pfam15921 75 HIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLrqSVIDLQTKL-----QEMQMERDAMADIRRRESQSQEDLRNQlqn 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 275 -------------------NSELEEKLRVLVAEKAAAQ------LGVEEL--QKKLEMSELLLQQFSSQSSAAGG----- 322
Cdd:pfam15921 150 tvheleaakclkedmledsNTQIEQLRKMMLSHEGVLQeirsilVDFEEAsgKKIYEHDSMSTMHFRSLGSAISKilrel 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 323 --------------NEQLQH-AMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKE 387
Cdd:pfam15921 230 dteisylkgrifpvEDQLEAlKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQAR 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 388 HRE----RQVQELETSLAALRSQMEeppppeppagpsEAEEQLQGEVEQLHKEL----ERLTGQLRAQVQDNESLSHLNR 459
Cdd:pfam15921 310 NQNsmymRQLSDLESTVSQLRSELR------------EAKRMYEDKIEELEKQLvlanSELTEARTERDQFSQESGNLDD 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 460 EQEGRLLELEREAQRWSEQAEERKQILESMQSDRTTIS---RAL-SQNRELKEQLA-------------ELQNGFVRLTN 522
Cdd:pfam15921 378 QLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDhlrRELdDRNMEVQRLEAllkamksecqgqmERQMAAIQGKN 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 523 ENMEITSALQSEQHVKKELARKLGE----------------------LQER----------LGELKETVELKSQEAQGLQ 570
Cdd:pfam15921 458 ESLEKVSSLTAQLESTKEMLRKVVEeltakkmtlessertvsdltasLQEKeraieatnaeITKLRSRVDLKLQELQHLK 537
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1676440368 571 EQRDQcLSHLQQYAAAYQQHLAayeqltsEKEAIHKQLLLQTQLMDQL--QHEEVQGKMAAELARQELQEAQERLK 644
Cdd:pfam15921 538 NEGDH-LRNVQTECEALKLQMA-------EKDKVIEILRQQIENMTQLvgQHGRTAGAMQVEKAQLEKEINDRRLE 605
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
470-649 |
7.51e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 7.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 470 REAQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQngfvrltnenmeitsalqseqhvKKELARKLGELQ 549
Cdd:COG4913 238 ERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALR-----------------------LWFAQRRLELLE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 550 ERLGELKETVELKSQEAQGLQEQRDQCLSHLQQYAAAYQQH-LAAYEQLTSEKEAIHKQLLLQTQLMDQLQHEEVQGKMA 628
Cdd:COG4913 295 AELEELRAELARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLP 374
|
170 180
....*....|....*....|.
gi 1676440368 629 AELARQELQEAQERLKATSQE 649
Cdd:COG4913 375 LPASAEEFAALRAEAAALLEA 395
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
325-582 |
7.65e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 39.88 E-value: 7.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 325 QLQHAMEERAQLethvsqlMESLKQLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELEtslaalR 404
Cdd:pfam07888 35 RLEECLQERAEL-------LQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELE------E 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 405 SQMEEPPPPEPPAGPSEAEEQLQGEVEQLHKELERLTGQLRAQVQDNESLSHLNREQEGRLLELEREAQrwseqaEERKQ 484
Cdd:pfam07888 102 KYKELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEE------AERKQ 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 485 ILESMQSDRTTISRALSQNRELKEQLAELQNGFVRLTNENMEITSALQSEQHVKKELARKLGEL---QERLGELKETVEL 561
Cdd:pfam07888 176 LQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELrslQERLNASERKVEG 255
|
250 260
....*....|....*....|.
gi 1676440368 562 KSQEAQGLQEQRDQCLSHLQQ 582
Cdd:pfam07888 256 LGEELSSMAAQRDRTQAELHQ 276
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
704-856 |
7.83e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 7.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 704 RAEEEQARLRVQLKEQKARCRSLSHLAAPVQSKLEkEAVVPRNVDDSASEESNQALHVAMEKLQsrflEVMQEKVELKER 783
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLE-ELRLEVSELEEEIEELQKELYALANEIS----RLEQQKQILRER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 784 VEELEHCCIQLSGETDTIG-------EYIALYQNQRAVLKARHLEKEEYISRLAQDKEEMKVKLLELQELVLRLVNERNE 856
Cdd:TIGR02168 311 LANLERQLEELEAQLEELEskldelaEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ 390
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
383-580 |
8.27e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.02 E-value: 8.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 383 KEEKEHRERqVQELETSLAALRSQMEEPPPPEPPAGPS--------EAEEQLQGEVEQLHKELERLTGQLRAQVQDNESL 454
Cdd:PRK02224 199 KEEKDLHER-LNGLESELAELDEEIERYEEQREQARETrdeadevlEEHEERREELETLEAEIEDLRETIAETEREREEL 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 455 SHLNREQEGRLLELERE------------------AQRWSEQAEERKQILESMQSDRTTISRALSQNRELKEQLAELQNG 516
Cdd:PRK02224 278 AEEVRDLRERLEELEEErddllaeaglddadaeavEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEER 357
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1676440368 517 FVRLTNENMEITSALQSEQHVKKELARKLGELQERLGELKETVELKSQEAQGLQEQRDQCLSHL 580
Cdd:PRK02224 358 AEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREER 421
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
250-406 |
8.43e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.14 E-value: 8.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 250 LTKERDALKLELyknsksnEDLRQQNSELEEKLRVLVAEKAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHA 329
Cdd:COG1579 22 LEHRLKELPAEL-------AELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEAL 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1676440368 330 MEERAQLETHVSQLMESLKQLQVERDQYAENLKGEsamwQQRVQQMAEQVHTLKEEkehRERQVQELETSLAALRSQ 406
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAEL----EAELAELEAELEEKKAE---LDEELAELEAELEELEAE 164
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
135-641 |
8.58e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 39.94 E-value: 8.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 135 LTSSNMKELEkQQNQDTLDQLEKEKKDYQQKLAKEQGSLREqlqvHIQTIGILVSEKAELQTALAHtqQAARQ---KAGE 211
Cdd:COG3096 434 LTPENAEDYL-AAFRAKEQQATEEVLELEQKLSVADAARRQ----FEKAYELVCKIAGEVERSQAW--QTAREllrRYRS 506
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 212 SEDLASRLQSSRQRVGELERTLSTVSTQQKQADRYNKDLTKERDAlklelyknsksNEDLRQQNSELEEKLRVLVAEKAA 291
Cdd:COG3096 507 QQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDA-----------AEELEELLAELEAQLEELEEQAAE 575
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 292 AQLGVEELQKKLEMSELLLQQFSS--------QSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQyaenlkg 363
Cdd:COG3096 576 AVEQRSELRQQLEQLRARIKELAArapawlaaQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDE------- 648
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 364 esamwqqrvqqmaeqvhtLKEEKEHRERQVQELetslaalrsqmeeppppepPAGPSEAEEQLQGEVEQLHKEL------ 437
Cdd:COG3096 649 ------------------LAARKQALESQIERL-------------------SQPGGAEDPRLLALAERLGGVLlseiyd 691
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 438 ----------ERLTGQLR-AQVQDNESL--SHLNREQE--GRLLELEREAQRWSE---QAEERKQILESMQSDRT----- 494
Cdd:COG3096 692 dvtledapyfSALYGPARhAIVVPDLSAvkEQLAGLEDcpEDLYLIEGDPDSFDDsvfDAEELEDAVVVKLSDRQwrysr 771
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676440368 495 -----TISRALSQNR--ELKEQLAELQNGFVRLTNENMEITSALQS-EQHVKKELARKLGELQErlgelketvelksQEA 566
Cdd:COG3096 772 fpevpLFGRAAREKRleELRAERDELAEQYAKASFDVQKLQRLHQAfSQFVGGHLAVAFAPDPE-------------AEL 838
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1676440368 567 QGLQEQRDQCLSHLQQYAAAYQQHLAAYEQLTSEKEAIHKqLLLQTQLMDQLQHEEvqgkmAAELARQELQEAQE 641
Cdd:COG3096 839 AALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNK-LLPQANLLADETLAD-----RLEELREELDAAQE 907
|
|
| |
