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Conserved domains on  [gi|1390003482|ref|NP_001350234|]
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nuclear distribution protein nudE-like 1 isoform 3 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
NUDE_C super family cl23541
NUDE protein, C-terminal conserved region; This family represents the C-terminal conserved ...
6-142 1.01e-26

NUDE protein, C-terminal conserved region; This family represents the C-terminal conserved region of the NUDE proteins. NUDE proteins are involved in nuclear migration.


The actual alignment was detected with superfamily member pfam04880:

Pssm-ID: 461464 [Multi-domain]  Cd Length: 169  Bit Score: 99.48  E-value: 1.01e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390003482   6 EQKDLRQELAVRERQQEVTRKSAPSSP---TLDCEKMDSAVQASlslpATPVG-KGTENSFPSpkAIPNGFGTSPLTPSA 81
Cdd:pfam04880  43 ELSDLKQELAIRQEKLRNLLMRSPSTPslqTLEIFDRSPAVQAV----SSPVIaTPPEKSFNS--LRTGSETATPPSPPA 116
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1390003482  82 RISAlnivgDLLRKVGALESKLAACRNFAKDQASRKSYvpgSVNCGVMNSNGPECPRSGRA 142
Cdd:pfam04880 117 SESS-----DLLRKVGALTPKLPRCRASASDSNASRRG---NSRSLYGSRPPTKFAHSRHT 169
 
Name Accession Description Interval E-value
NUDE_C pfam04880
NUDE protein, C-terminal conserved region; This family represents the C-terminal conserved ...
6-142 1.01e-26

NUDE protein, C-terminal conserved region; This family represents the C-terminal conserved region of the NUDE proteins. NUDE proteins are involved in nuclear migration.


Pssm-ID: 461464 [Multi-domain]  Cd Length: 169  Bit Score: 99.48  E-value: 1.01e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390003482   6 EQKDLRQELAVRERQQEVTRKSAPSSP---TLDCEKMDSAVQASlslpATPVG-KGTENSFPSpkAIPNGFGTSPLTPSA 81
Cdd:pfam04880  43 ELSDLKQELAIRQEKLRNLLMRSPSTPslqTLEIFDRSPAVQAV----SSPVIaTPPEKSFNS--LRTGSETATPPSPPA 116
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1390003482  82 RISAlnivgDLLRKVGALESKLAACRNFAKDQASRKSYvpgSVNCGVMNSNGPECPRSGRA 142
Cdd:pfam04880 117 SESS-----DLLRKVGALTPKLPRCRASASDSNASRRG---NSRSLYGSRPPTKFAHSRHT 169
 
Name Accession Description Interval E-value
NUDE_C pfam04880
NUDE protein, C-terminal conserved region; This family represents the C-terminal conserved ...
6-142 1.01e-26

NUDE protein, C-terminal conserved region; This family represents the C-terminal conserved region of the NUDE proteins. NUDE proteins are involved in nuclear migration.


Pssm-ID: 461464 [Multi-domain]  Cd Length: 169  Bit Score: 99.48  E-value: 1.01e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390003482   6 EQKDLRQELAVRERQQEVTRKSAPSSP---TLDCEKMDSAVQASlslpATPVG-KGTENSFPSpkAIPNGFGTSPLTPSA 81
Cdd:pfam04880  43 ELSDLKQELAIRQEKLRNLLMRSPSTPslqTLEIFDRSPAVQAV----SSPVIaTPPEKSFNS--LRTGSETATPPSPPA 116
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1390003482  82 RISAlnivgDLLRKVGALESKLAACRNFAKDQASRKSYvpgSVNCGVMNSNGPECPRSGRA 142
Cdd:pfam04880 117 SESS-----DLLRKVGALTPKLPRCRASASDSNASRRG---NSRSLYGSRPPTKFAHSRHT 169
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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