|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
604-1089 |
3.64e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 100.40 E-value: 3.64e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 604 KQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLETS--Y 681
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRreL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 682 QQREEQLRREKEVLSAQHASYCREAEQARAELvAQHQRQMAMAEQERDQEVARLRELQQAsILEMRKDHEHQLQRLKMLK 761
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEEL-EEAEEELEEAEAELAEAEEALLEAEAE-LAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 762 DQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQRELGIRQQDEQLRALQERLG---RQQRDMEEE 838
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAlleLLAELLEEA 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 839 RNRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALLEEQKSVMNKCG 918
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 919 EERRRLAAEWAEYFTQQKLSKerAEREAERAMHADSQREGTIISLTKEQAELTVRACELRAKEEKLLAEREALERERQEL 998
Cdd:COG1196 553 VEDDEVAAAAIEYLKAAKAGR--ATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAA 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 999 RLEKDRLHKASL--RLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQRVHQEHLSLA 1076
Cdd:COG1196 631 RLEAALRRAVTLagRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA 710
|
490
....*....|...
gi 1395777135 1077 QQRLQLDRVRQEV 1089
Cdd:COG1196 711 EAEEERLEEELEE 723
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
612-1081 |
1.24e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.29 E-value: 1.24e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 612 QLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLETSYQQREEQLRRE 691
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 692 KEVLS-AQHASYCREAEQARAELVAQHQRQMAmAEQERDQEVARLRELQQASILEMRKDHEHQLQRLKMLKDQEIDAVTS 770
Cdd:COG1196 393 RAAAElAAQLEELEEAEEALLERLERLEEELE-ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 771 ATSHTRSLNGIIEQMEKFSSSLNTLSS-RVEASHLTTSQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGkm 849
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEaEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQ-- 549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 850 EVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALLEEQKSVMNKCGEER---RRLAA 926
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTllgRTLVA 629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 927 EWAEYFTQQKLSKERAEREAERAMHADSQREGTIISLTKEQAELTvracELRAKEEKLLAEREALERERQELRLEKDRLH 1006
Cdd:COG1196 630 ARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAAL----LEAEAELEELAERLAEEELELEEALLAEEEE 705
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1395777135 1007 KASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQrvhQEHLSLAQQRLQ 1081
Cdd:COG1196 706 ERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL---ERELERLEREIE 777
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
603-1074 |
1.43e-12 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 72.11 E-value: 1.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 603 QKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLL---ESLQQRHQADLELIEDAHrsRIKVLET 679
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLqllPLYQELEALEAELAELPE--RLEELEE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 680 SYQQREEqLRREKEVLSAQHASYCREAEQARAELVAQHQRQMAMAEQERDQEVARLRELQQASILEMRKDHEHQLQRLKM 759
Cdd:COG4717 154 RLEELRE-LEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 760 LKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEasHLTTSQQRELGIrqqdeqLRALQERLGRQQRDMEEER 839
Cdd:COG4717 233 ENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLIL--TIAGVLFLVLGL------LALLFLLLAREKASLGKEA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 840 NRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKiMVQQIAMEREELERAksALLEEQKSVMNKCG- 918
Cdd:COG4717 305 EELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQE-LLREAEELEEELQLE--ELEQEIAALLAEAGv 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 919 ---EERRRLAAEWAEYftqQKLskeraereaeramhadsQREGTIISLTKEQAELTVRACELRAKEEKLLAEREALERER 995
Cdd:COG4717 382 edeEELRAALEQAEEY---QEL-----------------KEELEELEEQLEELLGELEELLEALDEEELEEELEELEEEL 441
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1395777135 996 QELRLEKDRLHKaslRLQARAQEVEHMSKvaSKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQRVHQEHLS 1074
Cdd:COG4717 442 EELEEELEELRE---ELAELEAELEQLEE--DGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERLP 515
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
791-1089 |
2.47e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 2.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 791 SLNTLSSRVEASHLTtsQQRELGIRQQDEQLRALQErLGRQQRDMEEERNRLQEVIGKMEVRLSEQS---RLLEQERWRV 867
Cdd:TIGR02168 669 NSSILERRREIEELE--EKIEELEEKIAELEKALAE-LRKELEELEEELEQLRKELEELSRQISALRkdlARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 868 AAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALLEEQKSV---MNKCGEERRRLAAEWAEYF-TQQKLSKERAE 943
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIeqlKEELKALREALDELRAELTlLNEEAANLRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 944 REAERAMHADSQR-----EGTIISLTKEQAELTVRACELRAKEEKLLAEREALERERQELRLekdRLHKASLRLQARAQE 1018
Cdd:TIGR02168 826 LESLERRIAATERrledlEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE---ALALLRSELEELSEE 902
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1395777135 1019 VEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQRVHQEHLSLAQQR-LQLDRVRQEV 1089
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIeDDEEEARRRL 974
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
604-911 |
2.74e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 2.74e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 604 KQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRsRIKVletsYQQ 683
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQ-QKQI----LRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 684 REEQLRREKEVLSAQHASYCREAEQARAELvAQHQRQMAMAEQERDQEVARLRELQQAsiLEMRKDHEHQLQRlkmLKDQ 763
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEEL-AELEEKLEELKEELESLEAELEELEAE--LEELESRLEELEE---QLET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 764 EIDAVTSATSHTRSLNGIIEQMEkfsSSLNTLSSRVEAshlTTSQQRELGIRQQDEQLRALQERLGrqqrDMEEERNRLQ 843
Cdd:TIGR02168 384 LRSKVAQLELQIASLNNEIERLE---ARLERLEDRRER---LQQEIEELLKKLEEAELKELQAELE----ELEEELEELQ 453
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1395777135 844 EVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQrtleeQRKIMVQQIAMEREELERAKSALLEEQK 911
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQALDAAERELAQLQ-----ARLDSLERLQENLEGFSEGVKALLKNQS 516
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
637-1088 |
3.27e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 71.33 E-value: 3.27e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 637 QVRKLE-LERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLETSYQQREEQLRREKEVLSAQHASYCREAEQARAELVA 715
Cdd:PTZ00121 1210 EERKAEeARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEK 1289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 716 QHQRQMAMAEQERDQEVARLRELQQASILEMRKDHEHQLQRLKMLKDQEIDAVTSATSHTRslngiieQMEKFSSSLNTL 795
Cdd:PTZ00121 1290 KKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKA-------EAEAAADEAEAA 1362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 796 SSRVEASHLTTSQQRelgiRQQDEQLRALQERlgrqqRDMEEERNRLQEVIGKM-EVRLSEQSRLLEQERWRVAAEKTKA 874
Cdd:PTZ00121 1363 EEKAEAAEKKKEEAK----KKADAAKKKAEEK-----KKADEAKKKAEEDKKKAdELKKAAAAKKKADEAKKKAEEKKKA 1433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 875 ESAQRTLEEQRKI-MVQQIAMEREELERAKSALLEEQKSVMNKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHAD 953
Cdd:PTZ00121 1434 DEAKKKAEEAKKAdEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAD 1513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 954 SQREGTIISLTKE--QAELTVRACELRAKEEKLLAE--REALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKK 1029
Cdd:PTZ00121 1514 EAKKAEEAKKADEakKAEEAKKADEAKKAEEKKKADelKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEAR 1593
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1395777135 1030 YEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQ---RVHQEHLSLAQQRLQLDRVRQE 1088
Cdd:PTZ00121 1594 IEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEekkKVEQLKKKEAEEKKKAEELKKA 1655
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
631-910 |
5.49e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 5.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 631 LSELEAQVRKL---------------ELERAQHRMLLESLQQRHQ---------ADLELIEDAHRSRIKVLETSYQQ-RE 685
Cdd:TIGR02168 195 LNELERQLKSLerqaekaerykelkaELRELELALLVLRLEELREeleelqeelKEAEEELEELTAELQELEEKLEElRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 686 EQLRREKEVLSAQHASYCREAEQARAELVAQHQrqmamaeQERDQEVARLRELQQASILEMRKDHEHQLQRLKMLKDQEi 765
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQIL-------RERLANLERQLEELEAQLEELESKLDELAEELAELEEKL- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 766 davtsaTSHTRSLNGIIEQMEKFSSSLNTLSSRVEAS--HLTTSQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQ 843
Cdd:TIGR02168 347 ------EELKEELESLEAELEELEAELEELESRLEELeeQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQ 420
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1395777135 844 EVIGKMEVRLSEQSRLLEQERW-RVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALLEEQ 910
Cdd:TIGR02168 421 QEIEELLKKLEEAELKELQAELeELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
637-1087 |
1.75e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 69.01 E-value: 1.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 637 QVRKLELERAQHRMLLESLQQRHQaDLELIEDAHRSR--IKVLETSYQQREEQLRREKEVLSAQHASYCREAEQARAELV 714
Cdd:PTZ00121 1102 EAKKTETGKAEEARKAEEAKKKAE-DARKAEEARKAEdaRKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEA 1180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 715 AQHQRQMAMAEQERDQEVARLREL-----QQASILEMRK-DHEHQLQRLKMLKDQEIDAVTSATSHTRSLNgiiEQMEKF 788
Cdd:PTZ00121 1181 ARKAEEVRKAEELRKAEDARKAEAarkaeEERKAEEARKaEDAKKAEAVKKAEEAKKDAEEAKKAEEERNN---EEIRKF 1257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 789 SSSLNTLSSRVEASHLTTSQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRlqevigkmevrlSEQSRLLEQERWRVA 868
Cdd:PTZ00121 1258 EEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK------------AEEAKKADEAKKKAE 1325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 869 AEKTKAESAQRTLEEQRKimVQQIAMEREELERAKSALLEEQKSVMNKCGEERRRLAAEWAEYFTQQKLSKERAEREAER 948
Cdd:PTZ00121 1326 EAKKKADAAKKKAEEAKK--AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 949 AMHAD----SQREGTIISLTKEQAELTVRACELRAK-EEKLLAE---REALERERQELRLEKDRLHKASLRLQARAQE-- 1018
Cdd:PTZ00121 1404 KKKADelkkAAAAKKKADEAKKKAEEKKKADEAKKKaEEAKKADeakKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEak 1483
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 1019 -VEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQRVHQEHLSLAQQRLQLDRVRQ 1087
Cdd:PTZ00121 1484 kADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
643-1089 |
2.34e-11 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 67.87 E-value: 2.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 643 LERAQHRMLLESLQQRhqadlelIEDAHRSRIKVLETSYQQREEqLRREKEVLSAQHASYcREAEQARAELVAQHQRQMA 722
Cdd:COG4717 39 LLAFIRAMLLERLEKE-------ADELFKPQGRKPELNLKELKE-LEEELKEAEEKEEEY-AELQEELEELEEELEELEA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 723 mAEQERDQEVARLRELQQAsilemrKDHEHQLQRLKMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEAS 802
Cdd:COG4717 110 -ELEELREELEKLEKLLQL------LPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEEL 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 803 HLTTSQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQERWR--------------VA 868
Cdd:COG4717 183 LEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKearlllliaaallaLL 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 869 AEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALLEEQKSVMNKCGEERRRlAAEWAEYFTQQKLSKERAEREAER 948
Cdd:COG4717 263 GLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELE-EEELEELLAALGLPPDLSPEELLE 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 949 AMHADSQREGTIISLTKEQAELTVRACELR---------AKEEKLLAEREALERERQELRlekDRLHKASLRLQARAQEV 1019
Cdd:COG4717 342 LLDRIEELQELLREAEELEEELQLEELEQEiaallaeagVEDEEELRAALEQAEEYQELK---EELEELEEQLEELLGEL 418
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 1020 EHMSKVASKkyEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQRVHQEHlSLAQQRLQLDRVRQEV 1089
Cdd:COG4717 419 EELLEALDE--EELEEELEELEEELEELEEELEELREELAELEAELEQLEEDG-ELAELLQELEELKAEL 485
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
608-1088 |
3.56e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.86 E-value: 3.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 608 AAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRmlLESLQQRHQADLELIEDAHR---------SRIKVLE 678
Cdd:PTZ00121 1317 ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADE--AEAAEEKAEAAEKKKEEAKKkadaakkkaEEKKKAD 1394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 679 TSYQQREEQLRREKEVLSAQHASYCREAEQARAELVAQHQRQMAMAEQERDQEVARLRELQQASILEMRKDHEHQlqrlk 758
Cdd:PTZ00121 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEA----- 1469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 759 mlkdQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEAshlttsqqrelgiRQQDEQLRALQERLGRQQRDMEEE 838
Cdd:PTZ00121 1470 ----KKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA-------------KKKADEAKKAEEAKKADEAKKAEE 1532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 839 RNRLQEVIGKMEVRLSEQSRllEQERWRVAAEKTKAESAQRtlEEQRKIMVQQIAmerEELERAKSALLEEqksvMNKCG 918
Cdd:PTZ00121 1533 AKKADEAKKAEEKKKADELK--KAEELKKAEEKKKAEEAKK--AEEDKNMALRKA---EEAKKAEEARIEE----VMKLY 1601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 919 EERRRLAAEwaeyftqqKLSKERAEREAERAMHADSQREGTIISLTKEQAELTVRACELRAKEEKLLAEREAL------- 991
Cdd:PTZ00121 1602 EEEKKMKAE--------EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEakkaeed 1673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 992 ERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQAlQEAQQMQNEQQGRLQVVQRQQEWLRQ--QEQRVH 1069
Cdd:PTZ00121 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKA-EELKKAEEENKIKAEEAKKEAEEDKKkaEEAKKD 1752
|
490
....*....|....*....
gi 1395777135 1070 QEHLSLAQQRLQLDRVRQE 1088
Cdd:PTZ00121 1753 EEEKKKIAHLKKEEEKKAE 1771
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
660-1059 |
4.31e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 4.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 660 QADLELIEDAHRSRIKVLETSYQQRE--EQLRREKEVL-SAQHASYCREAEQARAELvAQHQRQMAMAEQERDQEVARLR 736
Cdd:TIGR02168 185 RENLDRLEDILNELERQLKSLERQAEkaERYKELKAELrELELALLVLRLEELREEL-EELQEELKEAEEELEELTAELQ 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 737 ELQQAsiLEmrkdhEHQLQRLKMlkDQEIDAVTSAtshtrslngiieqmekfsssLNTLSSRVEashltTSQQRELGIRQ 816
Cdd:TIGR02168 264 ELEEK--LE-----ELRLEVSEL--EEEIEELQKE--------------------LYALANEIS-----RLEQQKQILRE 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 817 QDEQLRALQERLGRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKimvqqiamER 896
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE--------QL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 897 EELERAKSALLEEQKSVMNkcgeERRRLAAEwaeyftqqklskeraereaeramhadsqregtiisltKEQAELTVRace 976
Cdd:TIGR02168 382 ETLRSKVAQLELQIASLNN----EIERLEAR-------------------------------------LERLEDRRE--- 417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 977 lRAKEEKLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQR 1056
Cdd:TIGR02168 418 -RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
|
...
gi 1395777135 1057 QQE 1059
Cdd:TIGR02168 497 LQE 499
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
624-1005 |
6.15e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.00 E-value: 6.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 624 LLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAhrsrikvletsyQQREEQLRREKEVLSAQHASYC 703
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL------------RKELEELSRQISALRKDLARLE 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 704 REAEQArAELVAQHQRQMAMAEQERDQEVARLRELQQAsilemRKDHEHQLQRLKmlkdqeidavtsatshtrslngiiE 783
Cdd:TIGR02168 740 AEVEQL-EERIAQLSKELTELEAEIEELEERLEEAEEE-----LAEAEAEIEELE------------------------A 789
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 784 QMEKFSSSLNTLSSRVEASHlttsqqrelgirqqdEQLRALQERLGRQQRDMEEERNRLQEvIGKMEVRLSEQSRLLEQE 863
Cdd:TIGR02168 790 QIEQLKEELKALREALDELR---------------AELTLLNEEAANLRERLESLERRIAA-TERRLEDLEEQIEELSED 853
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 864 RWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALlEEQKSVMNKCGEERRRLAAEWAEyfTQQKLSKERAE 943
Cdd:TIGR02168 854 IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL-EELSEELRELESKRSELRRELEE--LREKLAQLELR 930
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1395777135 944 REAERamhadsQREGTIISLTKEQAELTVRacELRAKEEKLLAEREALERERQELRLEKDRL 1005
Cdd:TIGR02168 931 LEGLE------VRIDNLQERLSEEYSLTLE--EAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
594-1088 |
1.40e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 1.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 594 QSLLPGSGYQKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQ------ADLELIE 667
Cdd:TIGR02168 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLEtlrskvAQLELQI 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 668 DAHRSRIKVLETSYQQREEQLRREKEVLSAQHASYCREAEQARAELVAQHQRQMAMAEQERDQEVARLRELQQAS----- 742
Cdd:TIGR02168 396 ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELeeaeq 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 743 -ILEMRKDHEHQLQRLKMLKDQE------IDAVTSATSHTRSLNGI-------IEQMEKFSSSLNT-LSSRVEA------ 801
Cdd:TIGR02168 476 aLDAAERELAQLQARLDSLERLQenlegfSEGVKALLKNQSGLSGIlgvlselISVDEGYEAAIEAaLGGRLQAvvvenl 555
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 802 ------------------SHLTTSQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGKMEVRLS--------- 854
Cdd:TIGR02168 556 naakkaiaflkqnelgrvTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLvvddldnal 635
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 855 EQSRLLEQE-------------RWRVAAEKTKAESAQ-------RTLEEQRKIMVQQIAMEREELERAKSALLEeqksvM 914
Cdd:TIGR02168 636 ELAKKLRPGyrivtldgdlvrpGGVITGGSAKTNSSIlerrreiEELEEKIEELEEKIAELEKALAELRKELEE-----L 710
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 915 NKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQREGTIISLTKEQAELTVRACELRAKEEKLLAEREALE-- 992
Cdd:TIGR02168 711 EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEaq 790
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 993 -----RERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQR 1067
Cdd:TIGR02168 791 ieqlkEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE 870
|
570 580
....*....|....*....|.
gi 1395777135 1068 VHQEHLSLAQQRLQLDRVRQE 1088
Cdd:TIGR02168 871 LESELEALLNERASLEEALAL 891
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
603-1051 |
1.90e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 1.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 603 QKQLLAAQGQLQSSTAQLQvellQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLETSYQ 682
Cdd:TIGR02168 350 KEELESLEAELEELEAELE----ELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 683 QREEQLRREKEVLSAQHASYCREAEQARAEL------VAQHQRQMAMAEQERDQEVARLRELQQ--ASILEMRKDHE--- 751
Cdd:TIGR02168 426 LLKKLEEAELKELQAELEELEEELEELQEELerleeaLEELREELEEAEQALDAAERELAQLQArlDSLERLQENLEgfs 505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 752 --------HQLQR-----------------------------------------------------------LKMLKDQE 764
Cdd:TIGR02168 506 egvkallkNQSGLsgilgvlselisvdegyeaaieaalggrlqavvvenlnaakkaiaflkqnelgrvtflpLDSIKGTE 585
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 765 IDA-----VTSATSHTRSLNGIIEQMEKFSSSLNTLSSRV---------------------------------------- 799
Cdd:TIGR02168 586 IQGndreiLKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVlvvddldnalelakklrpgyrivtldgdlvrpggvitggs 665
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 800 -EASHLTTSQQRELG-----IRQQDEQLRALQ---ERLGRQQRDMEEERNRLQEVIGKMEVRLSEQS---RLLEQERWRV 867
Cdd:TIGR02168 666 aKTNSSILERRREIEeleekIEELEEKIAELEkalAELRKELEELEEELEQLRKELEELSRQISALRkdlARLEAEVEQL 745
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 868 AAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALLEEQKSV---MNKCGEERRRLAAEWAEYF-TQQKLSKERAE 943
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIeqlKEELKALREALDELRAELTlLNEEAANLRER 825
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 944 REAERAMHADSQRE------------GTIISLTKEQAELTVRACELRAKEEKLLAEREALERERQELRLEKDRLHKASLR 1011
Cdd:TIGR02168 826 LESLERRIAATERRledleeqieelsEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE 905
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 1395777135 1012 LQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRL 1051
Cdd:TIGR02168 906 LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
604-936 |
3.49e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 3.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 604 KQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLEL--ERAQHRM------LLESLQQRHQADLELIE-----DAH 670
Cdd:TIGR02168 701 AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAevEQLEERIaqlskeLTELEAEIEELEERLEEaeeelAEA 780
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 671 RSRIKVLETSYQQREEQLRREKEVLSAQHASYCREAEQAR--AELVAQHQRQMAMAEQERDQEVARLRELqQASILEMRK 748
Cdd:TIGR02168 781 EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAnlRERLESLERRIAATERRLEDLEEQIEEL-SEDIESLAA 859
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 749 DHEHQLQRLKMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVeashlttsqqrelgiRQQDEQLRALQERL 828
Cdd:TIGR02168 860 EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR---------------SELRRELEELREKL 924
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 829 GRQQRDMEEERNRLQEVIGkmevRLSEQSRLLEQErwrVAAEKTKAESAQRTLEEQrkimVQQIAMEREELERAKSALLE 908
Cdd:TIGR02168 925 AQLELRLEGLEVRIDNLQE----RLSEEYSLTLEE---AEALENKIEDDEEEARRR----LKRLENKIKELGPVNLAAIE 993
|
330 340
....*....|....*....|....*...
gi 1395777135 909 EQKSVmnkcgEERRrlaaewaEYFTQQK 936
Cdd:TIGR02168 994 EYEEL-----KERY-------DFLTAQK 1009
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
603-992 |
1.19e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 1.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 603 QKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLETSYQ 682
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 683 QREEQLRREKEVLSAQHasycREAEQARAELVAQHQRQMAMAEQERDQEVARLRELQQASILEMRK----DHEHQLQRLK 758
Cdd:COG1196 454 LEEEEEALLELLAELLE----EAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLlaglRGLAGAVAVL 529
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 759 MLKDQEIDAVTSATSHTRSLNGIIEQMEKFSS----------------SLNTLSSRVEASHLTTSQQRELGIRQQDEQLR 822
Cdd:COG1196 530 IGVEAAYEAALEAALAAALQNIVVEDDEVAAAaieylkaakagratflPLDKIRARAALAAALARGAIGAAVDLVASDLR 609
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 823 ALQERLGRQQRDMEEER--NRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELE 900
Cdd:COG1196 610 EADARYYVLGDTLLGRTlvAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLA 689
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 901 RAKSALLEEQKSVMNKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQREGTIISLTKEQAELTVRAcELRAK 980
Cdd:COG1196 690 EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE-ELERE 768
|
410
....*....|..
gi 1395777135 981 EEKLLAEREALE 992
Cdd:COG1196 769 LERLEREIEALG 780
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
608-1057 |
1.51e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.85 E-value: 1.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 608 AAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRM--LLESLQQRHQADlELIEDAHRSR-----IKVLETS 680
Cdd:PTZ00121 1338 AEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKAdaAKKKAEEKKKAD-EAKKKAEEDKkkadeLKKAAAA 1416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 681 YQQREEQLRREKEVLSAQH----ASYCREAEQAR--AELVAQHQRQMAMAEQERDQEVARLRELQQASILEMRKDHEHQL 754
Cdd:PTZ00121 1417 KKKADEAKKKAEEKKKADEakkkAEEAKKADEAKkkAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAK 1496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 755 QRLKMLKDQEiDAVTSATSHTRSlngiiEQMEKfSSSLNTLSSRVEASHLTTSQQRELG--IRQQDEQLRALQERLGRQQ 832
Cdd:PTZ00121 1497 KKADEAKKAA-EAKKKADEAKKA-----EEAKK-ADEAKKAEEAKKADEAKKAEEKKKAdeLKKAEELKKAEEKKKAEEA 1569
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 833 RDMEEERN---RLQEVIGKME-VRLSEQSRLLEQERWRVAAEKTKAESAQ------RTLEEQRKIMVQQIAMEREELERA 902
Cdd:PTZ00121 1570 KKAEEDKNmalRKAEEAKKAEeARIEEVMKLYEEEKKMKAEEAKKAEEAKikaeelKKAEEEKKKVEQLKKKEAEEKKKA 1649
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 903 KSALLEEQKSVMNKcGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQREGTiiSLTKEQAELTVRACELRAKEE 982
Cdd:PTZ00121 1650 EELKKAEEENKIKA-AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE--ELKKKEAEEKKKAEELKKAEE 1726
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1395777135 983 KLLAEREALERERQELRLEKDRLHKAslrlQARAQEVEHMSKVASKKYEEGEQALQEA--QQMQNEQQGRLQVVQRQ 1057
Cdd:PTZ00121 1727 ENKIKAEEAKKEAEEDKKKAEEAKKD----EEEKKKIAHLKKEEEKKAEEIRKEKEAVieEELDEEDEKRRMEVDKK 1799
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
635-1087 |
1.60e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.47 E-value: 1.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 635 EAQVRKLELERAQHRML-LESLQQRHQADLELIEDAHRSRI--KVLETSYQQREEQLRREKEVLSAQHASycREAEQAR- 710
Cdd:PTZ00121 1239 AEEAKKAEEERNNEEIRkFEEARMAHFARRQAAIKAEEARKadELKKAEEKKKADEAKKAEEKKKADEAK--KKAEEAKk 1316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 711 ---AELVAQHQRQMAMA------EQERDQEVARLRELQQASILEMRKDHEHQLQRLKMLKDQEIDAVTSATSHTRSLNGI 781
Cdd:PTZ00121 1317 adeAKKKAEEAKKKADAakkkaeEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 782 IEQMEKFSSSLNTLSSRVEASHLTTSQQRELGIRQQDEQLR--ALQERLGRQQRDMEEERNRLQEVIGKME--------V 851
Cdd:PTZ00121 1397 KKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKkkAEEAKKADEAKKKAEEAKKAEEAKKKAEeakkadeaK 1476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 852 RLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALlEEQKSVMNKCGEERR-----RLAA 926
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE-EAKKADEAKKAEEKKkadelKKAE 1555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 927 EW--------AEYFTQQKLSKERAEREAERAMHADSQREGTIISLTKE----QAELTVRACELRAKEEKLLAEREALERE 994
Cdd:PTZ00121 1556 ELkkaeekkkAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEekkmKAEEAKKAEEAKIKAEELKKAEEEKKKV 1635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 995 RQELRLEKDRLHKASlrlQARAQEVEHMSKVA--SKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQ--RVHQ 1070
Cdd:PTZ00121 1636 EQLKKKEAEEKKKAE---ELKKAEEENKIKAAeeAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEElkKKEA 1712
|
490
....*....|....*..
gi 1395777135 1071 EHLSLAQQRLQLDRVRQ 1087
Cdd:PTZ00121 1713 EEKKKAEELKKAEEENK 1729
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
706-909 |
2.83e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 61.47 E-value: 2.83e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 706 AEQARAELvaqhQRQMAMAEQERDQEVARLRELQQAsiLEMRKDHEHQLQRLKMLKDQEIDaVTSATSHTRSLNGIIEQM 785
Cdd:COG4913 608 NRAKLAAL----EAELAELEEELAEAEERLEALEAE--LDALQERREALQRLAEYSWDEID-VASAEREIAELEAELERL 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 786 EKFSSSLNTLSSRVEAShlttsQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQERW 865
Cdd:COG4913 681 DASSDDLAALEEQLEEL-----EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF 755
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1395777135 866 RVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALLEE 909
Cdd:COG4913 756 AAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
809-1105 |
3.05e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 3.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 809 QRELGIRQQDEQLRALQErLGRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQ--ERWRVAAEKTKAESAQRTLEEQRK 886
Cdd:TIGR02169 217 LKEKREYEGYELLKEKEA-LERQKEAIERQLASLEEELEKLTEEISELEKRLEEieQLLEELNKKIKDLGEEEQLRVKEK 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 887 ImvQQIAMEREELERAKSALLEEQKSVMN---KCGEERRRLAAEWAEYFTQQklskERAEREAERAMHADSQREGTIISL 963
Cdd:TIGR02169 296 I--GELEAEIASLERSIAEKERELEDAEErlaKLEAEIDKLLAEIEELEREI----EEERKRRDKLTEEYAELKEELEDL 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 964 TKEQAELTVRACELRAKEEKLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQM 1043
Cdd:TIGR02169 370 RAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALE 449
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1395777135 1044 QNEQQGRLQVVQRQQEWLRQQEQRVHQEHLSLAQQRLQLDRVRQEVPASLPGLPPRVQGPAA 1105
Cdd:TIGR02169 450 IKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRA 511
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
604-1079 |
3.60e-09 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 61.14 E-value: 3.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 604 KQLLAAQGQLQSSTAQLQVEL------LQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRI-KV 676
Cdd:TIGR00618 229 KHLREALQQTQQSHAYLTQKReaqeeqLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIeQQ 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 677 LETSYQQREEQLR-REKEVLSAQHASYCREAEQARAELVAQHQRQMAMAEQERDQEVARLRELQQASILEmrkDHEHQLQ 755
Cdd:TIGR00618 309 AQRIHTELQSKMRsRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLT---QHIHTLQ 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 756 RLKMLKDQEIDAVTSATShtrslngiIEQMEKFSSSLNTLSSRVEASHLTTSQQRELGIRQQDEQLRALQERLGRQQRDM 835
Cdd:TIGR00618 386 QQKTTLTQKLQSLCKELD--------ILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 836 EEERNRLQEVIGKMEVRLSEQSRLLEQErwrvaaEKTKAESAQRTLEEQRkimvqqiamEREELERAKSALLEEQKSVMN 915
Cdd:TIGR00618 458 KIHLQESAQSLKEREQQLQTKEQIHLQE------TRKKAVVLARLLELQE---------EPCPLCGSCIHPNPARQDIDN 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 916 KCGEERRRLAAEWAEYFTQQKLSKEraereaeramhadsqrEGTIISLTKeqaeltvRACELRAKEEKLLAEREALERER 995
Cdd:TIGR00618 523 PGPLTRRMQRGEQTYAQLETSEEDV----------------YHQLTSERK-------QRASLKEQMQEIQQSFSILTQCD 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 996 QELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAqqmQNEQQGRLQVVQRQQEwLRQQEQRVHQEHLSL 1075
Cdd:TIGR00618 580 NRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPE---QDLQDVRLHLQQCSQE-LALKLTALHALQLTL 655
|
....
gi 1395777135 1076 AQQR 1079
Cdd:TIGR00618 656 TQER 659
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
613-992 |
4.20e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.24 E-value: 4.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 613 LQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRhqadlelIEDAHRSrIKVLETSYQQREEQLRREK 692
Cdd:TIGR02169 665 GILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQE-------LSDASRK-IGEIEKEIEQLEQEEEKLK 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 693 EVLsAQHASYCREAEQARAElvaqhqrqmamAEQERDQEVARLRELQqASILEMRKDHEHQLQRLKMLKDQEIDAvtsat 772
Cdd:TIGR02169 737 ERL-EELEEDLSSLEQEIEN-----------VKSELKELEARIEELE-EDLHKLEEALNDLEARLSHSRIPEIQA----- 798
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 773 shtrSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQRELgIRQQDEQLRALQER---LGRQQRDMEEERNRLQEVIGKM 849
Cdd:TIGR02169 799 ----ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE-IQELQEQRIDLKEQiksIEKEIENLNGKKEELEEELEEL 873
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 850 EVRLSE-QSRL--LEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIamerEELERAKSALLEEQKSVmnkcGEERRRLAA 926
Cdd:TIGR02169 874 EAALRDlESRLgdLKKERDELEAQLRELERKIEELEAQIEKKRKRL----SELKAKLEALEEELSEI----EDPKGEDEE 945
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1395777135 927 EWAEYFTQQKLSKERAEreaeraMHADSQREGTIISLTKEQAELTV-RACELRAKEEKLLAEREALE 992
Cdd:TIGR02169 946 IPEEELSLEDVQAELQR------VEEEIRALEPVNMLAIQEYEEVLkRLDELKEKRAKLEEERKAIL 1006
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
604-849 |
4.78e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 4.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 604 KQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLET---- 679
Cdd:TIGR02168 778 AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDiesl 857
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 680 -----SYQQREEQLRREKEVLSAQHASYCREAEQARAELVAQhQRQMAMAEQERDQEVARLRELQqasilEMRKDHEHQL 754
Cdd:TIGR02168 858 aaeieELEELIEELESELEALLNERASLEEALALLRSELEEL-SEELRELESKRSELRRELEELR-----EKLAQLELRL 931
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 755 QRLKMLKDQEIDAVTSatSHTRSLNGIIEQMEKFSSSLNTLSSRVeasHLTTSQQRELG------IrqqdEQLRALQER- 827
Cdd:TIGR02168 932 EGLEVRIDNLQERLSE--EYSLTLEEAEALENKIEDDEEEARRRL---KRLENKIKELGpvnlaaI----EEYEELKERy 1002
|
250 260
....*....|....*....|....
gi 1395777135 828 --LGRQQRDMEEERNRLQEVIGKM 849
Cdd:TIGR02168 1003 dfLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
620-1032 |
9.39e-09 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 59.14 E-value: 9.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 620 LQVELLQSQTKLSEL----EAQVRKLELERAQHRMLLESLQQRHQA----DLELIEDAHRSRIKVLETSYQQREEQ---- 687
Cdd:pfam07888 32 LQNRLEECLQERAELlqaqEAANRQREKEKERYKRDREQWERQRRElesrVAELKEELRQSREKHEELEEKYKELSasse 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 688 -LRREKEVLSAQhasycREAEQARAELVAQHQRQMAMAEQERDQEVARLRElQQASILEMRKDHEHQLQRLKMLKDQEID 766
Cdd:pfam07888 112 eLSEEKDALLAQ-----RAAHEARIRELEEDIKTLTQRVLERETELERMKE-RAKKAGAQRKEEEAERKQLQAKLQQTEE 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 767 AVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEAShLTTSQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQEVI 846
Cdd:pfam07888 186 ELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQK-LTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMA 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 847 GKMEVRLSE--QSRL-LEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALLEEQKSVMnkcgEERrr 923
Cdd:pfam07888 265 AQRDRTQAElhQARLqAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQ----EER-- 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 924 laaewaeyftqqklskeraereaeramhadSQREGTIISLTKEQAELTVRACELRAKEEKLLAEREALERERQELRLEKD 1003
Cdd:pfam07888 339 ------------------------------MEREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQ 388
|
410 420
....*....|....*....|....*....
gi 1395777135 1004 RLHKASLRLQARaqevehMSKVASKKYEE 1032
Cdd:pfam07888 389 ELLEYIRQLEQR------LETVADAKWSE 411
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
678-1073 |
1.11e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.77 E-value: 1.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 678 ETSYQQREEQLRREKEVLSAQHASYCREAEQARAELVAQHQRQMAMAEQERDQEVAR----LRELQQASILEMRKDHEHQ 753
Cdd:PTZ00121 1078 DFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARkaedARKAEEARKAEDAKRVEIA 1157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 754 lQRLKMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQRELGIRQQDEQLRALQERLGRQQR 833
Cdd:PTZ00121 1158 -RKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAK 1236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 834 DMEEERNRLQEVIGKMEVRLSEQSRLLEQERWRV---AAEKTKAESAQRTlEEQRKIMVQQIAMEREELERAKSALLEEQ 910
Cdd:PTZ00121 1237 KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAaikAEEARKADELKKA-EEKKKADEAKKAEEKKKADEAKKKAEEAK 1315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 911 KSvmnkcgEERRRLAAEWAEYFTQQKlSKERAEREAERAMHADSQREGTIISLTKEQAEltvrACELRAKEEKLLAerEA 990
Cdd:PTZ00121 1316 KA------DEAKKKAEEAKKKADAAK-KKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE----AAEKKKEEAKKKA--DA 1382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 991 LERERQELRlEKDRLHKASLRLQARAQEVEHmSKVASKKYEEGEQALQEAQQMQnEQQGRLQVVQRQQEWLRQQEQRVHQ 1070
Cdd:PTZ00121 1383 AKKKAEEKK-KADEAKKKAEEDKKKADELKK-AAAAKKKADEAKKKAEEKKKAD-EAKKKAEEAKKADEAKKKAEEAKKA 1459
|
...
gi 1395777135 1071 EHL 1073
Cdd:PTZ00121 1460 EEA 1462
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
604-1090 |
1.26e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 59.60 E-value: 1.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 604 KQLLAAQGQLQSSTAQLQVELL-------QSQTKLSELEAQVRKLELERAQHRMLLESLQQ----------RHQADLELI 666
Cdd:TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLctpcmpdTYHERKQVLEKELKHLREALQQTQQSHAYLTQkreaqeeqlkKQQLLKQLR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 667 EDAHRSRIKVLETSYQQREEQLRREKEVLsAQHASYCREAEQARAELVAQHQRQMAMAEQERDQevaRLRELQQASILEM 746
Cdd:TIGR00618 267 ARIEELRAQEAVLEETQERINRARKAAPL-AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMK---RAAHVKQQSSIEE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 747 RKDHEHQLQRLKMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQRELGIRQ--QDEQLRAL 824
Cdd:TIGR00618 343 QRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIdtRTSAFRDL 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 825 QERL--GRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQErwrvAAEKTKAESAQrtlEEQRKIMVQQIAMEREELERA 902
Cdd:TIGR00618 423 QGQLahAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQE----SAQSLKEREQQ---LQTKEQIHLQETRKKAVVLAR 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 903 KSALLEEQKSVMNKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQREGTiiSLTKEQAELTVRACELRAKEE 982
Cdd:TIGR00618 496 LLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLT--SERKQRASLKEQMQEIQQSFS 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 983 KLLAEREALERERQELRLEKDRLHK---ASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQE 1059
Cdd:TIGR00618 574 ILTQCDNRSKEDIPNLQNITVRLQDlteKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQL 653
|
490 500 510
....*....|....*....|....*....|.
gi 1395777135 1060 WLRQQEQRVHQehLSLAQQRLQLDRVRQEVP 1090
Cdd:TIGR00618 654 TLTQERVREHA--LSIRVLPKELLASRQLAL 682
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
814-1088 |
2.56e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 2.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 814 IRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGKME------VRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKI 887
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEelrlevSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 888 MVQQIAMEREELERAKSALLEEQKSvmnkcgeerrrlAAEWAEYFTQQKlskeraereaerAMHADSQREGTIISLTKEQ 967
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEE------------LAELEEKLEELK------------EELESLEAELEELEAELEE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 968 AELTVRACE--LRAKEEKLLAEREALERERQELRLEKDRLHKASLRLQARAQEVE-HMSKVASKKYEEGEQALQEAQQMQ 1044
Cdd:TIGR02168 370 LESRLEELEeqLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEeLLKKLEEAELKELQAELEELEEEL 449
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1395777135 1045 NEQQGRLQVVQRQQEWLRQQEQRVHQEHLSL------AQQRLQLDRVRQE 1088
Cdd:TIGR02168 450 EELQEELERLEEALEELREELEEAEQALDAAerelaqLQARLDSLERLQE 499
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
608-1118 |
2.57e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.59 E-value: 2.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 608 AAQGQLQSSTAQLQVELLQSQTK---------LSELEAQVRKLELE-RAQHRMLLESLQQRHQ----ADLELIE-----D 668
Cdd:pfam15921 287 ASSARSQANSIQSQLEIIQEQARnqnsmymrqLSDLESTVSQLRSElREAKRMYEDKIEELEKqlvlANSELTEarterD 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 669 AHRSRIKVLETSYQQREEQL-RREKEV-LSAQHASYCREAEQARAELVAQHQRQMamaeQERDQEVARLRELQQASILEM 746
Cdd:pfam15921 367 QFSQESGNLDDQLQKLLADLhKREKELsLEKEQNKRLWDRDTGNSITIDHLRREL----DDRNMEVQRLEALLKAMKSEC 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 747 RKDHEHQLQRLKMlKDQEIDAVTSATSHTRSLNGIIEQ-MEKFSSSLNTL-SSRVEASHLTTS-QQRELGIRQQDEQLRA 823
Cdd:pfam15921 443 QGQMERQMAAIQG-KNESLEKVSSLTAQLESTKEMLRKvVEELTAKKMTLeSSERTVSDLTASlQEKERAIEATNAEITK 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 824 LQERLGRQQRDMEEERNR------LQEVIGKMEVRLSEQSRLLEQERWRV------------AAEKTKAESAQ------- 878
Cdd:pfam15921 522 LRSRVDLKLQELQHLKNEgdhlrnVQTECEALKLQMAEKDKVIEILRQQIenmtqlvgqhgrTAGAMQVEKAQlekeind 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 879 RTLEEQR-KIMVQQIAMEREELErAKSALLEEQKSVMNKCGEERRRLAAEWAEYfTQQKLSKERAEREAERAMHADSQRE 957
Cdd:pfam15921 602 RRLELQEfKILKDKKDAKIRELE-ARVSDLELEKVKLVNAGSERLRAVKDIKQE-RDQLLNEVKTSRNELNSLSEDYEVL 679
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 958 GTIISLTKEQAELTVRACELRAKeekllAEREALERERQELR-LEKDRLHKASL----------------RLQARAQEVE 1020
Cdd:pfam15921 680 KRNFRNKSEEMETTTNKLKMQLK-----SAQSELEQTRNTLKsMEGSDGHAMKVamgmqkqitakrgqidALQSKIQFLE 754
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 1021 HMSKVASKK----YEEGEQALQEAQQM---QNEQQGRLQVVQRQQEWLRQQE---------------------QRVHQEH 1072
Cdd:pfam15921 755 EAMTNANKEkhflKEEKNKLSQELSTVateKNKMAGELEVLRSQERRLKEKVanmevaldkaslqfaecqdiiQRQEQES 834
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 1395777135 1073 LSLA-QQRLQLDRVRQEVPASLPGLPPRVQGPAASSRDAVQAPASSS 1118
Cdd:pfam15921 835 VRLKlQHTLDVKELQGPGYTSNSSMKPRLLQPASFTRTHSNVPSSQS 881
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
628-958 |
1.24e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 1.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 628 QTKLSELEAQVRKLELERAQ---HRMLLESLQQRHQAdleliedAHRSRIKVLETSYQQREEQL---RREKEVLSAQHAS 701
Cdd:TIGR02169 190 DLIIDEKRQQLERLRREREKaerYQALLKEKREYEGY-------ELLKEKEALERQKEAIERQLaslEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 702 YCREAEQARAELVAQHQRQMAMAEQERDQEVARLRELqQASILEMRKDHEHQLQRLKMLKDQEIDAVTsatshtrSLNGI 781
Cdd:TIGR02169 263 LEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGEL-EAEIASLERSIAEKERELEDAEERLAKLEA-------EIDKL 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 782 IEQMEKFSSSLNTLSSRVEA--SHLTTSQQRELGIRQQ----DEQLRALQERLGRQQRDMEEERNRLQEVIGKmEVRLSE 855
Cdd:TIGR02169 335 LAEIEELEREIEEERKRRDKltEEYAELKEELEDLRAEleevDKEFAETRDELKDYREKLEKLKREINELKRE-LDRLQE 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 856 QSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALLEEQKSV------MNKCGEERRRLAAEWA 929
Cdd:TIGR02169 414 ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELydlkeeYDRVEKELSKLQRELA 493
|
330 340
....*....|....*....|....*....
gi 1395777135 930 EYFTQQKLSKERAEREAERAMHADSQREG 958
Cdd:TIGR02169 494 EAEAQARASEERVRGGRAVEEVLKASIQG 522
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
704-1096 |
1.35e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 56.13 E-value: 1.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 704 REAEQARAELVAQHQRQMAMAEQERDQ----EVARLRELQQasilEMRKDHEH--QLQRLKMLKDQEIDAVTSATSHTRS 777
Cdd:TIGR00618 196 AELLTLRSQLLTLCTPCMPDTYHERKQvlekELKHLREALQ----QTQQSHAYltQKREAQEEQLKKQQLLKQLRARIEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 778 LNGIIEQMEKFSSSLNTlssRVEASHLTTSQQRELGIRQQDEQLRA-LQERLGRQQRDMEEERNRLQEVIGKMEVRLSEQ 856
Cdd:TIGR00618 272 LRAQEAVLEETQERINR---ARKAAPLAAHIKAVTQIEQQAQRIHTeLQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQ 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 857 SRLLEQERWRVAAEKT---KAESAQRTLEEQRKIMVQQIAMEREELERAKSALLEEQKSVMNKCG---EERRRLAAEWAE 930
Cdd:TIGR00618 349 TLHSQEIHIRDAHEVAtsiREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDtrtSAFRDLQGQLAH 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 931 YFTQQKLSKERAEREAERAMHADSQREGTIISLTKEQAELTVRACELRAKEEKLLAERE--ALERERQELRLEKDRLHKA 1008
Cdd:TIGR00618 429 AKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRkkAVVLARLLELQEEPCPLCG 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 1009 SLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQRVHQEHLSLAQQrlqldrvRQE 1088
Cdd:TIGR00618 509 SCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQC-------DNR 581
|
....*...
gi 1395777135 1089 VPASLPGL 1096
Cdd:TIGR00618 582 SKEDIPNL 589
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
616-1084 |
1.49e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 56.11 E-value: 1.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 616 STAQLQVELLQSQTKLseLEAQVRKLELERAqhrmlLESLQQRhQADLELIEDAHRSRIKVLETSYQQREEQLRREKEVL 695
Cdd:COG3096 286 RALELRRELFGARRQL--AEEQYRLVEMARE-----LEELSAR-ESDLEQDYQAASDHLNLVQTALRQQEKIERYQEDLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 696 SAQHASycREAEQARAElvAQHQRQMAMAEQER-DQEVARLR----ELQQAsiLEMRKDHEHQLQrlkmlkdQEIDAVTS 770
Cdd:COG3096 358 ELTERL--EEQEEVVEE--AAEQLAEAEARLEAaEEEVDSLKsqlaDYQQA--LDVQQTRAIQYQ-------QAVQALEK 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 771 AtshtRSLNGiieqmekfsssLNTLSSRVEASHLTTSQQRElgiRQQDEQLRALQERLgrqqRDMEEERNRLQEVIGKME 850
Cdd:COG3096 425 A----RALCG-----------LPDLTPENAEDYLAAFRAKE---QQATEEVLELEQKL----SVADAARRQFEKAYELVC 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 851 VRLSEQSRlleQERWRVAAEKTKAESAQRTLEEQrkimVQQIAMEREELERaksaLLEEQKSVmnkcgeerRRLAAEWAe 930
Cdd:COG3096 483 KIAGEVER---SQAWQTARELLRRYRSQQALAQR----LQQLRAQLAELEQ----RLRQQQNA--------ERLLEEFC- 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 931 yftqQKLSKERAEREAERAMHAdsQREGTIISLTKEQAELTVRACELRAkeekllaEREALERERQELRLEKDRLHKASL 1010
Cdd:COG3096 543 ----QRIGQQLDAAEELEELLA--ELEAQLEELEEQAAEAVEQRSELRQ-------QLEQLRARIKELAARAPAWLAAQD 609
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1395777135 1011 RLQARAQEVEhmskvaskkyeegeQALQEAQQMQNeqqgrlqvvQRQQewLRQQEQRVHQEHLSLAQQRLQLDR 1084
Cdd:COG3096 610 ALERLREQSG--------------EALADSQEVTA---------AMQQ--LLEREREATVERDELAARKQALES 658
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
602-757 |
2.03e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 55.41 E-value: 2.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 602 YQKQLLAAQGQL-----QSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRS-RIK 675
Cdd:COG3206 187 LRKELEEAEAALeefrqKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSpVIQ 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 676 VLETSYQQREEQLRREKEVLSAQHASYcREAEQARAELVAQHQRQMAMAEQERDQEVARLRElQQASILEMRKDHEHQLQ 755
Cdd:COG3206 267 QLRAQLAELEAELAELSARYTPNHPDV-IALRAQIAALRAQLQQEAQRILASLEAELEALQA-REASLQAQLAQLEARLA 344
|
..
gi 1395777135 756 RL 757
Cdd:COG3206 345 EL 346
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
612-881 |
2.11e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 55.73 E-value: 2.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 612 QLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQ------ADLELIEDAHRSRikvlETSYQQRE 685
Cdd:COG3096 344 RQQEKIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDslksqlADYQQALDVQQTR----AIQYQQAV 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 686 EQLRREKEVLSA----------QHASYCREAEQARAELVAQHQRqMAMAEQERDQ-------------EVARLRELQQA- 741
Cdd:COG3096 420 QALEKARALCGLpdltpenaedYLAAFRAKEQQATEEVLELEQK-LSVADAARRQfekayelvckiagEVERSQAWQTAr 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 742 SILEMRKDHEHQLQRLKMLK----------DQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVE--ASHLTTSQQ 809
Cdd:COG3096 499 ELLRRYRSQQALAQRLQQLRaqlaeleqrlRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEelEEQAAEAVE 578
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 810 RELGIRQQDEQLRALQERLGRQQ---RDMEEERNRLQEVIGK--------MEVR--LSEQSRLLEQERWRVAAEKTKAES 876
Cdd:COG3096 579 QRSELRQQLEQLRARIKELAARApawLAAQDALERLREQSGEaladsqevTAAMqqLLEREREATVERDELAARKQALES 658
|
....*
gi 1395777135 877 AQRTL 881
Cdd:COG3096 659 QIERL 663
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
623-1084 |
4.65e-07 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 53.98 E-value: 4.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 623 ELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDahrsRIKVLETSYQQREEQLRREKEVLSAQhasy 702
Cdd:pfam05557 3 ELIESKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESD----RNQELQKRIRLLEKREAEAEEALREQ---- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 703 creAEQARAELvaQHQRQMAMAEQERDQEVARLRELQQASILEMRkdhehQLQRLKMLKDQEIDAVTSATSHTRSLNGII 782
Cdd:pfam05557 75 ---AELNRLKK--KYLEALNKKLNEKESQLADAREVISCLKNELS-----ELRRQIQRAELELQSTNSELEELQERLDLL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 783 E----QMEKFSSSLNT-LSSRVEASHLTTSQQRELGIRQQD-EQLRALQERLGRQQrDMEEERNRLQEVIGKMEvRLSEQ 856
Cdd:pfam05557 145 KakasEAEQLRQNLEKqQSSLAEAEQRIKELEFEIQSQEQDsEIVKNSKSELARIP-ELEKELERLREHNKHLN-ENIEN 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 857 SRLLEQErwrvaaektkAESAQRTLEEQRKIMVQQIAMEReELERAKSALLEEQKSVMNKCGEERRRLAAewAEYFTQQK 936
Cdd:pfam05557 223 KLLLKEE----------VEDLKRKLEREEKYREEAATLEL-EKEKLEQELQSWVKLAQDTGLNLRSPEDL--SRRIEQLQ 289
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 937 LSKERAEREAERAMHADSQREGTIISLTKEQAELTVRACELRAKEEKLLAEREALERERQELRLEKDrLHKASLRLQARA 1016
Cdd:pfam05557 290 QREIVLKEENSSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERD-GYRAILESYDKE 368
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1395777135 1017 QEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQRVHQEHLSLAQQRLQLDR 1084
Cdd:pfam05557 369 LTMSNYSPQLLERIEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADP 436
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
618-1080 |
5.46e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 5.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 618 AQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRH-QADLELIEDAhRSRIKVLETSYQQREEQLRREKEVLS 696
Cdd:COG4913 291 ELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIrGNGGDRLEQL-EREIERLERELEERERRRARLEALLA 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 697 AQHASYCREAE------QARAELVAQHQRQMAMAEQERDQEVARLRELQQA--------SILEMRKD--HEHQLQRLKML 760
Cdd:COG4913 370 ALGLPLPASAEefaalrAEAAALLEALEEELEALEEALAEAEAALRDLRRElreleaeiASLERRKSniPARLLALRDAL 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 761 KDQ----EIDA------VTSATSHTRSLNGIieqmEKFsssLNTLSSR--VEASHLttSQQRELgIRQQDEQLRALQERL 828
Cdd:COG4913 450 AEAlgldEAELpfvgelIEVRPEEERWRGAI----ERV---LGGFALTllVPPEHY--AAALRW-VNRLHLRGRLVYERV 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 829 GRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQE---RWRVAaektKAESAQRTLEEQRKIMVQ-QIAMEREELE---- 900
Cdd:COG4913 520 RTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAElgrRFDYV----CVDSPEELRRHPRAITRAgQVKGNGTRHEkddr 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 901 -------------RAKSALLEEQ----KSVMNKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQREgtIISL 963
Cdd:COG4913 596 rrirsryvlgfdnRAKLAALEAElaelEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAERE--IAEL 673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 964 TKEQAELTVRACELRA---KEEKLLAEREALERERQELRLEKDRLHKaslRLQARAQEVEHMSKVASKKYEEGEQALQEA 1040
Cdd:COG4913 674 EAELERLDASSDDLAAleeQLEELEAELEELEEELDELKGEIGRLEK---ELEQAEEELDELQDRLEAAEDLARLELRAL 750
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 1395777135 1041 QQMQNEQQGRLQVVQRQQEWLrQQEQRVHQEHLSLAQQRL 1080
Cdd:COG4913 751 LEERFAAALGDAVERELRENL-EERIDALRARLNRAEEEL 789
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
595-900 |
6.64e-07 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 53.90 E-value: 6.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 595 SLLPG--SGYQKQLLAAQGQLQS----STAQLQVELLQSQTKLSELEAQVRKLELER--AQHRMlleslqqrhqadlELI 666
Cdd:PRK10929 140 SQLPQqqTEARRQLNEIERRLQTlgtpNTPLAQAQLTALQAESAALKALVDELELAQlsANNRQ-------------ELA 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 667 edahRSRIKVLETSYQQREEQLRREKEVLSAQHAsycREAEQA--RAELvaqhqrqmaMAEQERDQEVARLRELQQASil 744
Cdd:PRK10929 207 ----RLRSELAKKRSQQLDAYLQALRNQLNSQRQ---REAERAleSTEL---------LAEQSGDLPKSIVAQFKINR-- 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 745 EMRKDHEHQLQRLKMLKDQEIDAvTSATSHTR-SLNGIIEQMEKFSSSlNTLSsrveashlttsqqrelgirqqdEQLRA 823
Cdd:PRK10929 269 ELSQALNQQAQRMDLIASQQRQA-ASQTLQVRqALNTLREQSQWLGVS-NALG----------------------EALRA 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 824 LQERLGR----QQRDMEEERNRLQevigkmevRLSEQSrLLEQERwrvAAEKTKAESAQRTLEEQRKIMVQQIAMEREEL 899
Cdd:PRK10929 325 QVARLPEmpkpQQLDTEMAQLRVQ--------RLRYED-LLNKQP---QLRQIRQADGQPLTAEQNRILDAQLRTQRELL 392
|
.
gi 1395777135 900 E 900
Cdd:PRK10929 393 N 393
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
830-1081 |
6.72e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 6.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 830 RQQRDMEEERNRLQEVIGKME---VRLSEQSRlleqerwrvAAEKTKAESAQRTlEEQRKIMVQQIAMEREELERAKSAL 906
Cdd:TIGR02168 179 RKLERTRENLDRLEDILNELErqlKSLERQAE---------KAERYKELKAELR-ELELALLVLRLEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 907 LEEQksvmnkcgEERRRLAAEWAEYftQQKLSKERAEREAERAMHADSQREgtIISLTKEQAELTVRACELRAKEEKLL- 985
Cdd:TIGR02168 249 KEAE--------EELEELTAELQEL--EEKLEELRLEVSELEEEIEELQKE--LYALANEISRLEQQKQILRERLANLEr 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 986 ------AEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQE 1059
Cdd:TIGR02168 317 qleeleAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396
|
250 260
....*....|....*....|....
gi 1395777135 1060 WL--RQQEQRVHQEHLSLAQQRLQ 1081
Cdd:TIGR02168 397 SLnnEIERLEARLERLEDRRERLQ 420
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
745-1011 |
1.03e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 745 EMRKDHEHQLQRLKmlkdQEIDAVTSATSHTRS-LNGIIEQMEKFSSSLNTLSSRVeashlttsQQRELGIRQQDEQLRA 823
Cdd:COG4942 20 DAAAEAEAELEQLQ----QEIAELEKELAALKKeEKALLKQLAALERRIAALARRI--------RALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 824 LQERLGRQQRDMEEERNRLQEVIGKMEvRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAK 903
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLRALY-RLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 904 SALLEEQKsvmnkcgeERRRLAAEWAEyfTQQKLSKERaereaeramhadSQREGTIISLTKEQAELTVRACELRAKEEK 983
Cdd:COG4942 167 AELEAERA--------ELEALLAELEE--ERAALEALK------------AERQKLLARLEKELAELAAELAELQQEAEE 224
|
250 260
....*....|....*....|....*...
gi 1395777135 984 LLAEREALERERQELRLEKDRLHKASLR 1011
Cdd:COG4942 225 LEALIARLEAEAAAAAERTPAAGFAALK 252
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
604-871 |
1.06e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 1.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 604 KQLLAAQGQLQssTAQLQVELL-----------QSQTKLSELEAQVRKLELERAQHRM-LLESLQQRHQADLELIEDAHR 671
Cdd:COG4913 235 DDLERAHEALE--DAREQIELLepirelaeryaAARERLAELEYLRAALRLWFAQRRLeLLEAELEELRAELARLEAELE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 672 SRikvletsyQQREEQLRREKEVLSAQHAsycreaeQARAELVAQHQRQMAMAEQERDQEVARLRELQQasilemrkdhe 751
Cdd:COG4913 313 RL--------EARLDALREELDELEAQIR-------GNGGDRLEQLEREIERLERELEERERRRARLEA----------- 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 752 hQLQRLKMlkdqeidavtSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEAsHLTTSQQRELGIRQQDEQLRALQERLGRQ 831
Cdd:COG4913 367 -LLAALGL----------PLPASAEEFAALRAEAAALLEALEEELEALEE-ALAEAEAALRDLRRELRELEAEIASLERR 434
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1395777135 832 Q----RDMEEERNRLQEVIGKMEVRLSEQSRLLE----QERWRVAAEK 871
Cdd:COG4913 435 KsnipARLLALRDALAEALGLDEAELPFVGELIEvrpeEERWRGAIER 482
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
611-1020 |
1.15e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.12 E-value: 1.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 611 GQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHrSRIKVLETSYQQREEQLRR 690
Cdd:PRK02224 366 AELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELR-EREAELEATLRTARERVEE 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 691 EKEVLSAqhaSYCREAEQARAElvAQHqrqmAMAEQERDQEVARLrELQQASILEMRKDHEHQLQRLKMLKDQEidavts 770
Cdd:PRK02224 445 AEALLEA---GKCPECGQPVEG--SPH----VETIEEDRERVEEL-EAELEDLEEEVEEVEERLERAEDLVEAE------ 508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 771 atshtrslngiiEQMEKFSSSLNTLSSRVEASHLTTSQQREL--GIRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGK 848
Cdd:PRK02224 509 ------------DRIERLEERREDLEELIAERRETIEEKRERaeELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAE 576
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 849 MEVRLSEQSRLLEQERwRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERaksalLEEQKsvmnkcgEERRRLAAEw 928
Cdd:PRK02224 577 LNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRER-----LAEKR-------ERKRELEAE- 642
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 929 aeyFTQQKLSKeraereaeramhADSQREgtiiSLTKEQAELTVRACELRAKEEKLLAEREALERE---RQELRLEKDRL 1005
Cdd:PRK02224 643 ---FDEARIEE------------AREDKE----RAEEYLEQVEEKLDELREERDDLQAEIGAVENEleeLEELRERREAL 703
|
410
....*....|....*
gi 1395777135 1006 HKASLRLQARAQEVE 1020
Cdd:PRK02224 704 ENRVEALEALYDEAE 718
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
633-927 |
1.36e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 1.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 633 ELEAQVRKL-----ELERAqHRMLLESLQQRHQadLELIEDAHRSRIKVLETSYQQREEQLRREKEVLSAQHASYCREAE 707
Cdd:COG4913 222 DTFEAADALvehfdDLERA-HEALEDAREQIEL--LEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELE 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 708 QARAELvAQHQRQMAMAEQERDQEVARLRELQQAsILEmrkdheHQLQRLKMLKDQeidavtsatshtrslngiIEQMEK 787
Cdd:COG4913 299 ELRAEL-ARLEAELERLEARLDALREELDELEAQ-IRG------NGGDRLEQLERE------------------IERLER 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 788 fssslntlssrveashltTSQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGkmevRLSEQSRLLEQERWRV 867
Cdd:COG4913 353 ------------------ELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLE----ALEEELEALEEALAEA 410
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 868 AAEKTKAESAQRTLEEqrkimvqqiamEREELERAKSALLEEQKSVmnkcgeeRRRLAAE 927
Cdd:COG4913 411 EAALRDLRRELRELEA-----------EIASLERRKSNIPARLLAL-------RDALAEA 452
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
610-1083 |
2.02e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 2.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 610 QGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLE--TSYQQREEQ 687
Cdd:TIGR02169 289 QLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEeyAELKEELED 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 688 LRREKEVLSAQHASYCREAEQARAELvAQHQRQMAMAEQERDQEVARLRELQQAsILEMRKDHEHQLQRLKMLKDQEIDA 767
Cdd:TIGR02169 369 LRAELEEVDKEFAETRDELKDYREKL-EKLKREINELKRELDRLQEELQRLSEE-LADLNAAIAGIEAKINELEEEKEDK 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 768 VTSATSHTRSLNGIIEQMEKFSSSLNTLS-----------------SRVEAShLTTSQQRELGIRQQDEQLRA-LQERLG 829
Cdd:TIGR02169 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKeeydrvekelsklqrelAEAEAQ-ARASEERVRGGRAVEEVLKAsIQGVHG 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 830 --RQQRDMEEER---------NRLQEV---------------------------IGKMEVRLSEQSRLLEQERWRVAAE- 870
Cdd:TIGR02169 526 tvAQLGSVGERYataievaagNRLNNVvveddavakeaiellkrrkagratflpLNKMRDERRDLSILSEDGVIGFAVDl 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 871 ---KTKAESA----------QRTLEEQRKIM---------------------------------------VQQIAMEREE 898
Cdd:TIGR02169 606 vefDPKYEPAfkyvfgdtlvVEDIEAARRLMgkyrmvtlegelfeksgamtggsraprggilfsrsepaeLQRLRERLEG 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 899 LERAKSALLEEQKSVMNKCGEERRRLAAEWAEYFTQQK-LSKERAEREAERAMHADSQREGTIIS--LTKEQAELTVRAC 975
Cdd:TIGR02169 686 LKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKeIEQLEQEEEKLKERLEELEEDLSSLEqeIENVKSELKELEA 765
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 976 ELRAKEEKLLAEREALE-------RER-QELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQ 1047
Cdd:TIGR02169 766 RIEELEEDLHKLEEALNdlearlsHSRiPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845
|
570 580 590
....*....|....*....|....*....|....*.
gi 1395777135 1048 QGRLQVVQRQQEWLRQQEQRVHQEHLSLAQQRLQLD 1083
Cdd:TIGR02169 846 KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE 881
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
603-1071 |
2.53e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.89 E-value: 2.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 603 QKQLLAAQGQLQSSTA---QLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLET 679
Cdd:TIGR00618 385 QQQKTTLTQKLQSLCKeldILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQES 464
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 680 SYQQREE-QLRREKEVLSAQHASYCREAEQaRAELVAQHQRQMAMAEQERDQEVARLREL------------QQASILEM 746
Cdd:TIGR00618 465 AQSLKEReQQLQTKEQIHLQETRKKAVVLA-RLLELQEEPCPLCGSCIHPNPARQDIDNPgpltrrmqrgeqTYAQLETS 543
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 747 RKDHEHQLQ----RLKMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQRELgirqQDEQLR 822
Cdd:TIGR00618 544 EEDVYHQLTserkQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACE----QHALLR 619
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 823 ALQERLGRQQRDMEEERnrLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKI-----MVQQIAMERE 897
Cdd:TIGR00618 620 KLQPEQDLQDVRLHLQQ--CSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALqkmqsEKEQLTYWKE 697
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 898 ELERAKSALLEEQKSVmnkcgEERRRLAAEWaeyftQQKLSKERAEREAERAMHADSQREGTIISLT--KEQAELTVRAC 975
Cdd:TIGR00618 698 MLAQCQTLLRELETHI-----EEYDREFNEI-----ENASSSLGSDLAAREDALNQSLKELMHQARTvlKARTEAHFNNN 767
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 976 ELRAKEEKLLAEREALERERQ-ELRLEKDRLHKASLRLQARAQEVEHMSKV-------ASKKYEEGEQALQEAQQMQNE- 1046
Cdd:TIGR00618 768 EEVTAALQTGAELSHLAAEIQfFNRLREEDTHLLKTLEAEIGQEIPSDEDIlnlqcetLVQEEEQFLSRLEEKSATLGEi 847
|
490 500
....*....|....*....|....*..
gi 1395777135 1047 --QQGRLQVVQRQQEWLRQQEQRVHQE 1071
Cdd:TIGR00618 848 thQLLKYEECSKQLAQLTQEQAKIIQL 874
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
801-1059 |
2.92e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 2.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 801 ASHLTTSQQREL-GIRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQR 879
Cdd:COG4942 18 QADAAAEAEAELeQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 880 TLEEQRKIMVQQIAMEREELERAKSALLEEQKSVmnkcGEERRRLaaEWAEYFTQQklskeraereaeramhadsqregt 959
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALLLSPEDF----LDAVRRL--QYLKYLAPA------------------------ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 960 iislTKEQAEltvracELRAKEEKLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQE 1039
Cdd:COG4942 148 ----RREQAE------ELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAE 217
|
250 260
....*....|....*....|
gi 1395777135 1040 AQQMQNEQQGRLQVVQRQQE 1059
Cdd:COG4942 218 LQQEAEELEALIARLEAEAA 237
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
603-801 |
3.28e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 3.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 603 QKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRhqadLELIEDahrsRIKVLETSYQ 682
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQE----LAALEA----ELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 683 QREEQLRREKEVLSAQHASYCREAEQARAEL-------------------VAQHQRQMAMAEQERDQEVARLREL---QQ 740
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPPLALllspedfldavrrlqylkyLAPARREQAEELRADLAELAALRAEleaER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1395777135 741 ASILEMRKDHEHQLQRLKMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEA 801
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
682-903 |
3.73e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 3.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 682 QQREEQLRREKEVLSAQHASYCREAEQARAELVAQhQRQMAMAEQERDQEVARLRELQQaSILEMRKDHEHQLQRLKMLK 761
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAAL-ARRIRALEQELAALEAELAELEK-EIAELRAELEAQKEELAELL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 762 dqeidavtsATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQREL-GIRQQDEQLRALQERLGRQQRDMEEERN 840
Cdd:COG4942 111 ---------RALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAeELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1395777135 841 RLQEVIGKMEVRLSEQSRLLEQerwrVAAEKTKAESAQRTLEEQRKIMVQQIA-MEREELERAK 903
Cdd:COG4942 182 ELEEERAALEALKAERQKLLAR----LEKELAELAAELAELQQEAEELEALIArLEAEAAAAAE 241
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
628-1081 |
3.77e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.19 E-value: 3.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 628 QTKLSELEAQVRKLELERAQHRMLLEslqqrhqaDLELIEDAHRSRikvletsyQQREEQLRREKEVLSAQHASYCREAE 707
Cdd:PRK02224 212 ESELAELDEEIERYEEQREQARETRD--------EADEVLEEHEER--------REELETLEAEIEDLRETIAETERERE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 708 QARAElVAQHQRQMAMAEQERDQEVAR--LRELQQASILEMRKDHEHQLQRLKMLKDQEIDAVTSATSHTRSLNGIIEQM 785
Cdd:PRK02224 276 ELAEE-VRDLRERLEELEEERDDLLAEagLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 786 EKFSSSLN----TLSSRVEASHLTTSQQRElGIRQQDEQLRALQERLGRQQRDME----------EERNRLQEVIGKMEV 851
Cdd:PRK02224 355 EERAEELReeaaELESELEEAREAVEDRRE-EIEELEEEIEELRERFGDAPVDLGnaedfleelrEERDELREREAELEA 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 852 -------RLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKimvqqiamEREELERAKSALLEEQKSVMNKC--GEERR 922
Cdd:PRK02224 434 tlrtareRVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRE--------RVEELEAELEDLEEEVEEVEERLerAEDLV 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 923 RLAAEWAEYFTQQKLSKERAEREAERamhADSQREgTIISLTKEQAELTVRACELRAKEEKLLAERE-------ALERER 995
Cdd:PRK02224 506 EAEDRIERLEERREDLEELIAERRET---IEEKRE-RAEELRERAAELEAEAEEKREAAAEAEEEAEeareevaELNSKL 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 996 QELRLEKDRLHKASLRLQARAQEVEHMSKVASKkyeegeqaLQEAQQMQNEQQGRLqvvQRQQEWLRQQEQRVHQEHLSL 1075
Cdd:PRK02224 582 AELKERIESLERIRTLLAAIADAEDEIERLREK--------REALAELNDERRERL---AEKRERKRELEAEFDEARIEE 650
|
....*.
gi 1395777135 1076 AQQRLQ 1081
Cdd:PRK02224 651 AREDKE 656
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
645-1051 |
4.00e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 51.38 E-value: 4.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 645 RAQHRMLLESLQQRHQADLEliedahrSRIKVLETSYQQREEQLRRE-----KEVLSAQHASYCREAEQARAEL----VA 715
Cdd:pfam12128 196 RDVKSMIVAILEDDGVVPPK-------SRLNRQQVEHWIRDIQAIAGimkirPEFTKLQQEFNTLESAELRLSHlhfgYK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 716 QHQRQMAMAEQERDQEVARLRELqqasiLEMRKDhehQLQRLKMLKDQEIDAVTSATSHTRS-LNGIIEQMEKFssslnt 794
Cdd:pfam12128 269 SDETLIASRQEERQETSAELNQL-----LRTLDD---QWKEKRDELNGELSAADAAVAKDRSeLEALEDQHGAF------ 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 795 LSSRVEASHLttSQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGkmevrlSEQSRLLEQERWRVAAEKtka 874
Cdd:pfam12128 335 LDADIETAAA--DQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIK------EQNNRDIAGIKDKLAKIR--- 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 875 ESAQRTLEEQRKIMVQQIAMEREELERAKSALLEEQKSVMNKCGEERRRLAAewaeyftqqklskeraereaeramhads 954
Cdd:pfam12128 404 EARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQ---------------------------- 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 955 qreGTIISLTKEQAELTVRACE-LRAKEEKLLAEREALERERQELRLEKDrlhKASLRLQaraqevehmskVASKKYEEG 1033
Cdd:pfam12128 456 ---ATATPELLLQLENFDERIErAREEQEAANAEVERLQSELRQARKRRD---QASEALR-----------QASRRLEER 518
|
410
....*....|....*...
gi 1395777135 1034 EQALQEAQQMQNEQQGRL 1051
Cdd:pfam12128 519 QSALDELELQLFPQAGTL 536
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
602-1098 |
4.73e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.99 E-value: 4.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 602 YQKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLElerAQHRMLL-ESLQQRH---------QADLELIEdahr 671
Cdd:pfam12128 288 LNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALE---DQHGAFLdADIETAAadqeqlpswQSELENLE---- 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 672 SRIKVLETSYQQREEQLRREKEVLSAQHASYCREAEQARAELVAQHQRQMAMAEQERDQEVARLRELQQASILEMRKDHE 751
Cdd:pfam12128 361 ERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEY 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 752 HQLQRLKMLKDQeIDAVTsATSHTrslngiIEQMEKFSSSLNTLSSRVEASHLTTSQ-QRELgiRQQDEQLRALQERLGR 830
Cdd:pfam12128 441 RLKSRLGELKLR-LNQAT-ATPEL------LLQLENFDERIERAREEQEAANAEVERlQSEL--RQARKRRDQASEALRQ 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 831 QQRDMEEERNRLQEVI-------GKMEVRLSEQSRLLEQERWRVAAE----KTKAESAQRTLEEQRKIMVQQIAMEREEL 899
Cdd:pfam12128 511 ASRRLEERQSALDELElqlfpqaGTLLHFLRKEAPDWEQSIGKVISPellhRTDLDPEVWDGSVGGELNLYGVKLDLKRI 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 900 ERAKSALLEEQKsvmnkcgeeRRRLAAEWAEYFTQQKLSKEraereaeramhADSQREGTIISLTKEQAELTVRACELRA 979
Cdd:pfam12128 591 DVPEWAASEEEL---------RERLDKAEEALQSAREKQAA-----------AEEQLVQANGELEKASREETFARTALKN 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 980 KeekllaeREALERERQELRLEKDRLHKASLRLQARAQE----VEHMSKVASKKYEEGEQALQE-AQQMQNEQQGRLQVV 1054
Cdd:pfam12128 651 A-------RLDLRRLFDEKQSEKDKKNKALAERKDSANErlnsLEAQLKQLDKKHQAWLEEQKEqKREARTEKQAYWQVV 723
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 1395777135 1055 qrqQEWLRQQEQRVHQEHLSL-AQQRLQLDRVRQEVPASLPGLPP 1098
Cdd:pfam12128 724 ---EGALDAQLALLKAAIAARrSGAKAELKALETWYKRDLASLGV 765
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
770-1088 |
4.80e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 51.11 E-value: 4.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 770 SATSHTRSLNGIIEQMEKFSSSLNTLSSRVEAshlttsQQRELGIRQQDEQlrALQERLGRQQRDM--EEERNRLQEVIG 847
Cdd:PRK04863 287 EALELRRELYTSRRQLAAEQYRLVEMARELAE------LNEAESDLEQDYQ--AASDHLNLVQTALrqQEKIERYQADLE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 848 KMEVRLSEQSRLLEQERWRVAAEKTKAESA--------------QRTLEEQRKIMVQ-QIAMEReeLERAKSALLEEQKS 912
Cdd:PRK04863 359 ELEERLEEQNEVVEEADEQQEENEARAEAAeeevdelksqladyQQALDVQQTRAIQyQQAVQA--LERAKQLCGLPDLT 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 913 VMNkcgeerrrlAAEWAEYFTQQKLSKERAEREAERAMH----ADSQREGTIISLTK-------EQAELTVRACELRAKE 981
Cdd:PRK04863 437 ADN---------AEDWLEEFQAKEQEATEELLSLEQKLSvaqaAHSQFEQAYQLVRKiagevsrSEAWDVARELLRRLRE 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 982 EKLLAER-EALERERQELRlekdrlhkASLRLQARAQEvehMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEW 1060
Cdd:PRK04863 508 QRHLAEQlQQLRMRLSELE--------QRLRQQQRAER---LLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSE 576
|
330 340
....*....|....*....|....*...
gi 1395777135 1061 LRQQEQRVHQEHLSLAQQRLQLDRVRQE 1088
Cdd:PRK04863 577 ARERRMALRQQLEQLQARIQRLAARAPA 604
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
621-879 |
4.95e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 50.89 E-value: 4.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 621 QVELLQSQTKLSELEaQVRKLELERAQHRML-LESLQQRHQADLELI--EDAHRSRIKVLETSYQQREEQLRREKEVLSA 697
Cdd:pfam17380 349 ELERIRQEERKRELE-RIRQEEIAMEISRMReLERLQMERQQKNERVrqELEAARKVKILEEERQRKIQQQKVEMEQIRA 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 698 QHASYCREAEQARAELVAQHQRQMAMAEQERDQEVARLRElqqasilemrkdHEHQLQRLKMLKDQEIDAVTSATSHTRS 777
Cdd:pfam17380 428 EQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQ------------QEEERKRKKLELEKEKRDRKRAEEQRRK 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 778 lngIIEQMEKFSSSLNTLSSRVEASHLTTSQQRELGIRQQDEQLRALQERlgRQQRDMeEERNRLQEvigKMEVRLSEQS 857
Cdd:pfam17380 496 ---ILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEER--RKQQEM-EERRRIQE---QMRKATEERS 566
|
250 260
....*....|....*....|..
gi 1395777135 858 RLLEQERWRVAAEKTKAESAQR 879
Cdd:pfam17380 567 RLEAMEREREMMRQIVESEKAR 588
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
620-1050 |
7.96e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.50 E-value: 7.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 620 LQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLETSYQQREeQLRR---EKEVLS 696
Cdd:pfam15921 108 LRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIE-QLRKmmlSHEGVL 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 697 AQHASYCREAEQARAELVAQHQRQMAMAEQERDQEVAR-LRELQ-QASILEMRK-DHEHQLQRLK--------MLKDQEI 765
Cdd:pfam15921 187 QEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKiLRELDtEISYLKGRIfPVEDQLEALKsesqnkieLLLQQHQ 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 766 DAVTSATS-HTRSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQRELGIRQQDE------QLRALQERLGRQQRDMEEE 838
Cdd:pfam15921 267 DRIEQLISeHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDlestvsQLRSELREAKRMYEDKIEE 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 839 RNRlQEVIGKMEV--------RLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRK----------IMVQQIAMEREELE 900
Cdd:pfam15921 347 LEK-QLVLANSELtearterdQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKrlwdrdtgnsITIDHLRRELDDRN 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 901 RAKSALLEEQKSVMNKC-GEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQREGTIISLTKEQAELTV------- 972
Cdd:pfam15921 426 MEVQRLEALLKAMKSECqGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVsdltasl 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 973 ----RACELRAKEEKLLAEREALE-RERQELRLEKDRLHKA-----SLRLQARA---------QEVEHMSKVASKKYEEG 1033
Cdd:pfam15921 506 qekeRAIEATNAEITKLRSRVDLKlQELQHLKNEGDHLRNVqteceALKLQMAEkdkvieilrQQIENMTQLVGQHGRTA 585
|
490
....*....|....*..
gi 1395777135 1034 EQALQEAQQMQNEQQGR 1050
Cdd:pfam15921 586 GAMQVEKAQLEKEINDR 602
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
808-1056 |
8.49e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.02 E-value: 8.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 808 QQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGK-MEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRK 886
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKnGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 887 IMVQQIAMEREELERAKsalleeQKSVMNKCGEERRRLAAEWAEYftQQKLSKEraereaeramHADsqregtIISLTKE 966
Cdd:COG3206 244 ALRAQLGSGPDALPELL------QSPVIQQLRAQLAELEAELAEL--SARYTPN----------HPD------VIALRAQ 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 967 QAELTVR-ACELRAKEEKLLAEREALERERQELRLEKDRLHKASLRL---QARAQEVEHMSKVASKKYEEGEQALQEAQQ 1042
Cdd:COG3206 300 IAALRAQlQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELpelEAELRRLEREVEVARELYESLLQRLEEARL 379
|
250
....*....|....
gi 1395777135 1043 MQNEQQGRLQVVQR 1056
Cdd:COG3206 380 AEALTVGNVRVIDP 393
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
674-1053 |
1.01e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.05 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 674 IKVLETSYQQREEQLRREKEVLSAQ--HASYCREAEQARAELVAQHqrqmamAEQERDQEVARLRELQQASILEMRKDHE 751
Cdd:TIGR00606 185 IKALETLRQVRQTQGQKVQEHQMELkyLKQYKEKACEIRDQITSKE------AQLESSREIVKSYENELDPLKNRLKEIE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 752 HQLQRLKMLKDQeidavtsatshTRSLNGIIEQMEKFSSSLntlssrveashlttSQQRELGIRQQDEQLRALQERLGRQ 831
Cdd:TIGR00606 259 HNLSKIMKLDNE-----------IKALKSRKKQMEKDNSEL--------------ELKMEKVFQGTDEQLNDLYHNHQRT 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 832 QRDMEEERNRLQEVIGKmevrLSEQSRLLEQERWRVAAEKTKAE-SAQRTLEEQRK----IMVQQIAMEREELERakSAL 906
Cdd:TIGR00606 314 VREKERELVDCQRELEK----LNKERRLLNQEKTELLVEQGRLQlQADRHQEHIRArdslIQSLATRLELDGFER--GPF 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 907 LEEQKSVMNKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQREGTIIS-----LTKEQAELTVRACELR--- 978
Cdd:TIGR00606 388 SERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIElkkeiLEKKQEELKFVIKELQqle 467
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1395777135 979 AKEEKLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEgeqalQEAQQMQNEQQGRLQV 1053
Cdd:TIGR00606 468 GSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLD-----QEMEQLNHHTTTRTQM 537
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
618-901 |
1.31e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.65 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 618 AQLQVELLQSQTKLSELEAQVRKLE-LERAQHRmlLESLQQRHQADLELIEDaHRSRIKvletSYQQREEQLRREKEVLS 696
Cdd:PRK02224 478 EELEAELEDLEEEVEEVEERLERAEdLVEAEDR--IERLEERREDLEELIAE-RRETIE----EKRERAEELRERAAELE 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 697 AQhASYCREAEQARAELVAQHQRQMAMAEQERDQEVARLRELQQ-ASILEMRKDHEHQLQRLKmlkdQEIDAVTSATSHT 775
Cdd:PRK02224 551 AE-AEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERiRTLLAAIADAEDEIERLR----EKREALAELNDER 625
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 776 RslngiiEQMEKFSSSLNTLSSRVEASHLTTSQQRelgiRQQDEQLralQERLGRQQRDMEEERNRLQEVIGKMEVRLSE 855
Cdd:PRK02224 626 R------ERLAEKRERKRELEAEFDEARIEEARED----KERAEEY---LEQVEEKLDELREERDDLQAEIGAVENELEE 692
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1395777135 856 QSRL------LEQERWRVAAEKTKAESAQRTLEEQRKIMVQQiamEREELER 901
Cdd:PRK02224 693 LEELrerreaLENRVEALEALYDEAEELESMYGDLRAELRQR---NVETLER 741
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
604-1080 |
1.39e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 49.35 E-value: 1.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 604 KQLLAAQGQLQSSTAQLQVELLQSQT----KLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRsRIKVLET 679
Cdd:pfam05557 82 KKYLEALNKKLNEKESQLADAREVISclknELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQ-LRQNLEK 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 680 SYQQREEQLRREKEvLSAQHASYcreaEQARAELVAQHQRQMAMAEQERDQE-----VARLRELQQASIL--EMRKDHEH 752
Cdd:pfam05557 161 QQSSLAEAEQRIKE-LEFEIQSQ----EQDSEIVKNSKSELARIPELEKELErlrehNKHLNENIENKLLlkEEVEDLKR 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 753 QLQRLKMLKDQEIDA--------------VTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQRELGIRQQD 818
Cdd:pfam05557 236 KLEREEKYREEAATLelekekleqelqswVKLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRE 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 819 eqlraLQERLGRQQRDMEEERNRLQEVIGKMEvRLSEQSRLLEQERWRVAA-------EKTKAESAQRTLEEQRKI--MV 889
Cdd:pfam05557 316 -----LEQELAQYLKKIEDLNKKLKRHKALVR-RLQRRVLLLTKERDGYRAilesydkELTMSNYSPQLLERIEEAedMT 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 890 QQIAMEREELERAKSALLEEQKSVMNKCGEERRRLaaewaeyftqQKLSKERAereaeramHADSqregtiiSLTKEQAE 969
Cdd:pfam05557 390 QKMQAHNEEMEAQLSVAEEELGGYKQQAQTLEREL----------QALRQQES--------LADP-------SYSKEEVD 444
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 970 ltvracELRAKEEKLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYeegeQALQEAQQMQNEQQG 1049
Cdd:pfam05557 445 ------SLRRKLETLELERQRLREQKNELEMELERRCLQGDYDPKKTKVLHLSMNPAAEAY----QQRKNQLEKLQAEIE 514
|
490 500 510
....*....|....*....|....*....|.
gi 1395777135 1050 RLQVVQRQQEWLRQQEQRVHQEHLSLAQQRL 1080
Cdd:pfam05557 515 RLKRLLKKLEDDLEQVLRLPETTSTMNFKEV 545
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
604-1051 |
1.78e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.29 E-value: 1.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 604 KQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLqqrhqadlelieDAHRSRIKVLETSYQQ 683
Cdd:PRK03918 182 EKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL------------EELKEEIEELEKELES 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 684 REEQLRREKEVLsaqhasycREAEQARAELVAQhqrqmamaEQERDQEVARLRELQQAS-----ILEMRKDHEHQLQRLK 758
Cdd:PRK03918 250 LEGSKRKLEEKI--------RELEERIEELKKE--------IEELEEKVKELKELKEKAeeyikLSEFYEEYLDELREIE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 759 MLKdqeidavtsaTSHTRSLNGIIEQMEKfsssLNTLSSRVEashlttsqqrELgirqqDEQLRALQERLGRqqrdMEEE 838
Cdd:PRK03918 314 KRL----------SRLEEEINGIEERIKE----LEEKEERLE----------EL-----KKKLKELEKRLEE----LEER 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 839 RNRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSAL--LEEQKSVMNK 916
Cdd:PRK03918 361 HELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIeeLKKAKGKCPV 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 917 CG-----EERRRLAAEWAEyftqqKLSKERAEREAERAMHADSQREGTII-SLTKEQAELTVR---ACELRAKEEKLLA- 986
Cdd:PRK03918 441 CGrelteEHRKELLEEYTA-----ELKRIEKELKEIEEKERKLRKELRELeKVLKKESELIKLkelAEQLKELEEKLKKy 515
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1395777135 987 EREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKyEEGEQALQEAQQMQNEQQGRL 1051
Cdd:PRK03918 516 NLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKL-AELEKKLDELEEELAELLKEL 579
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
785-1079 |
2.19e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.95 E-value: 2.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 785 MEKFSSSLNTLSSRVEASHLttsqQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQER 864
Cdd:pfam05483 192 IEKMILAFEELRVQAENARL----EMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESR 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 865 WRV--AAEKTKAESaqrtleEQRKIMVQQIAMEREELERAKSALleeQKSV-MNKCGEERRRLAAEWAEYFTQQKLSKER 941
Cdd:pfam05483 268 DKAnqLEEKTKLQD------ENLKELIEKKDHLTKELEDIKMSL---QRSMsTQKALEEDLQIATKTICQLTEEKEAQME 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 942 aereaeramhaDSQREGTIISLTKEQAELTVraCELRakeekllaerEALERERQELRLEKDRLHKASLRLQARAQEVEH 1021
Cdd:pfam05483 339 -----------ELNKAKAAHSFVVTEFEATT--CSLE----------ELLRTEQQRLEKNEDQLKIITMELQKKSSELEE 395
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1395777135 1022 MSKVASKKyeegEQALQEAQQMQNEQQgRLQVVQRQQEWLRQQEQRVHQEHLSLAQQR 1079
Cdd:pfam05483 396 MTKFKNNK----EVELEELKKILAEDE-KLLDEKKQFEKIAEELKGKEQELIFLLQAR 448
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
604-1006 |
2.21e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.80 E-value: 2.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 604 KQLLAAQGQLQSSTAQLQVE---LLQSQTKLSELEAQVRKLE---------LERAQHRMLLESLQQRHQADLELIEDAHR 671
Cdd:PRK04863 286 EEALELRRELYTSRRQLAAEqyrLVEMARELAELNEAESDLEqdyqaasdhLNLVQTALRQQEKIERYQADLEELEERLE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 672 SRIKVLETSYQQREEQLRR----EKEVLS--AQHASYCR--EAEQARAElvaqhQRQMAMAEQERDQEVARLRELQQASI 743
Cdd:PRK04863 366 EQNEVVEEADEQQEENEARaeaaEEEVDElkSQLADYQQalDVQQTRAI-----QYQQAVQALERAKQLCGLPDLTADNA 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 744 ---LEMRKDHEHQL-QRLKMLKDQEIDAVTSATSHT------RSLNGIIEQMEKFSSSLNTLSSRVEASHLTtsqQRELG 813
Cdd:PRK04863 441 edwLEEFQAKEQEAtEELLSLEQKLSVAQAAHSQFEqayqlvRKIAGEVSRSEAWDVARELLRRLREQRHLA---EQLQQ 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 814 IRQQdeqLRALQERLgRQQRDMEEERNRLQEVIGKMEVRLSEQSRLL-EQERWRVAAEKTKAESAQRTLEEQRKImvQQI 892
Cdd:PRK04863 518 LRMR---LSELEQRL-RQQQRAERLLAEFCKRLGKNLDDEDELEQLQeELEARLESLSESVSEARERRMALRQQL--EQL 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 893 AMEREELERaksalleeqksvmnkcgeerrrLAAEWAEYftQQKLSKERAEREAERamhADSQRegtIISLTKEQAEltv 972
Cdd:PRK04863 592 QARIQRLAA----------------------RAPAWLAA--QDALARLREQSGEEF---EDSQD---VTEYMQQLLE--- 638
|
410 420 430
....*....|....*....|....*....|....
gi 1395777135 973 racelraKEEKLLAEREALERERQELRLEKDRLH 1006
Cdd:PRK04863 639 -------RERELTVERDELAARKQALDEEIERLS 665
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
596-745 |
2.62e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 2.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 596 LLPGSGYQKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLEL---ERAQHRMLLESLQQRHQADLELIE----- 667
Cdd:COG3206 207 LVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDalpELLQSPVIQQLRAQLAELEAELAElsary 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 668 -DAH------RSRIKVLETSYQQREEQ----LRREKEVLSAQHASYCREAEQARAELVAQHQRQMAMAEQERDQEVAR-- 734
Cdd:COG3206 287 tPNHpdvialRAQIAALRAQLQQEAQRilasLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARel 366
|
170
....*....|....*
gi 1395777135 735 ----LRELQQASILE 745
Cdd:COG3206 367 yeslLQRLEEARLAE 381
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
643-1038 |
2.79e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.58 E-value: 2.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 643 LERAQHRMLLESLQQRhqadlELIEDAHRSRIKvletsyQQREEQLRREKEVLSAQHASYCREAEQARAELVAQHQRQMA 722
Cdd:pfam17380 275 LHIVQHQKAVSERQQQ-----EKFEKMEQERLR------QEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMA 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 723 MaeqERDQEVARLRElqqasilemrkdhEHQLQRLKMLKDQEIDAVTSATSHTRSLngiieQMEKfssslntlssrveas 802
Cdd:pfam17380 344 M---ERERELERIRQ-------------EERKRELERIRQEEIAMEISRMRELERL-----QMER--------------- 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 803 hlttsQQRELGIRQQDEQlralqerlGRQQRDMEEERNR-LQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTL 881
Cdd:pfam17380 388 -----QQKNERVRQELEA--------ARKVKILEEERQRkIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLE 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 882 EEQRKIMVQQIAMEREELERAKSALLEEQKSvmNKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQRegtii 961
Cdd:pfam17380 455 EQERQQQVERLRQQEEERKRKKLELEKEKRD--RKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQK----- 527
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1395777135 962 SLTKEQaeltvracELRAKEEKLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQ 1038
Cdd:pfam17380 528 AIYEEE--------RRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYEATTP 596
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
603-997 |
3.27e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.18 E-value: 3.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 603 QKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQV-----RKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVL 677
Cdd:pfam05483 362 EELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTkfknnKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQEL 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 678 ETSYQQREEQ---LRREKEVLSAQHASYCREAEQARAEL---------VAQHQRQMAMAEQERDQEVARLR-EL--QQAS 742
Cdd:pfam05483 442 IFLLQAREKEihdLEIQLTAIKTSEEHYLKEVEDLKTELekeklknieLTAHCDKLLLENKELTQEASDMTlELkkHQED 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 743 ILEMRKDHEHQLQRLKMLKDQEIDAVTSATSHTRSLngiIEQMEKFSSSLNTlSSRVEASHLTTSQQRELGIRQQDEQLR 822
Cdd:pfam05483 522 IINCKKQEERMLKQIENLEEKEMNLRDELESVREEF---IQKGDEVKCKLDK-SEENARSIEYEVLKKEKQMKILENKCN 597
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 823 ALQERLGRQQRDMEEernrLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEE-----QRKIMVQQIAMER- 896
Cdd:pfam05483 598 NLKKQIENKNKNIEE----LHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEiidnyQKEIEDKKISEEKl 673
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 897 -EELERAKSALLEE---QKSVMNKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQREGTIISLTKEQAELTV 972
Cdd:pfam05483 674 lEEVEKAKAIADEAvklQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKA 753
|
410 420
....*....|....*....|....*
gi 1395777135 973 RACELRAKEEKLLAEREALERERQE 997
Cdd:pfam05483 754 ELLSLKKQLEIEKEEKEKLKMEAKE 778
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
623-1046 |
4.13e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.75 E-value: 4.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 623 ELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLETSyqQREEQLRREKEVLSAQHASY 702
Cdd:PRK03918 287 ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK--KKLKELEKRLEELEERHELY 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 703 creaEQARAELVAQHQRQMAMAEQERDQEVARLRELQQASiLEMRKDHEHQLQRLKMLKDQE------IDAVTSA----- 771
Cdd:PRK03918 365 ----EEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAK-EEIEEEISKITARIGELKKEIkelkkaIEELKKAkgkcp 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 772 ---------------TSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQREL-GIRQQDEQLRALQERLG------ 829
Cdd:PRK03918 440 vcgrelteehrkellEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELiKLKELAEQLKELEEKLKkynlee 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 830 --RQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQERwrvaaEKTKAESAQRTLEEQRKIM-----------VQQIAMER 896
Cdd:PRK03918 520 leKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKK-----KLAELEKKLDELEEELAELlkeleelgfesVEELEERL 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 897 EELERAKSALLEEQKSVMNKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQREGTiislTKEQAELTVRACE 976
Cdd:PRK03918 595 KELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS----EEEYEELREEYLE 670
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 977 LRAKEEKLLAEREALERERQE-------LRLEKDRLHKASLRLQ----ARAQEVEHMSKVASKKYEEGEQALQEAQQMQN 1045
Cdd:PRK03918 671 LSRELAGLRAELEELEKRREEikktlekLKEELEEREKAKKELEklekALERVEELREKVKKYKALLKERALSKVGEIAS 750
|
.
gi 1395777135 1046 E 1046
Cdd:PRK03918 751 E 751
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
967-1047 |
4.21e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.47 E-value: 4.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 967 QAELTVRACELRAKEEKLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNE 1046
Cdd:PRK12704 74 EKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE 153
|
.
gi 1395777135 1047 Q 1047
Cdd:PRK12704 154 E 154
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
663-1045 |
4.52e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.04 E-value: 4.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 663 LELIEDAHRSRIKVLETsyqQREEQLRREKEVLsAQHASYCREAEQARAELVAQHQRQMAmAEQERDQEVARLRELQQAS 742
Cdd:pfam02463 156 LEIEEEAAGSRLKRKKK---EALKKLIEETENL-AELIIDLEELKLQELKLKEQAKKALE-YYQLKEKLELEEEYLLYLD 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 743 ILEMRKDHEHQLQRLKMLKDQEIDavtsatshtrSLNGIIEQMEKfssslntlssrveashlttSQQRELGIRQQDEQLR 822
Cdd:pfam02463 231 YLKLNEERIDLLQELLRDEQEEIE----------SSKQEIEKEEE-------------------KLAQVLKENKEEEKEK 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 823 ALQER-----------LGRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQERwRVAAEKTKAESAQRTLEEQRKIMVQQ 891
Cdd:pfam02463 282 KLQEEelkllakeeeeLKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEK-EEIEELEKELKELEIKREAEEEEEEE 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 892 IAMEREELERAKSALLEEQKSVMNKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSqregTIISLTKEQAELT 971
Cdd:pfam02463 361 LEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKE----EKKEELEILEEEE 436
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1395777135 972 VRACELRAKEEKLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQN 1045
Cdd:pfam02463 437 ESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLK 510
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
617-841 |
5.76e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 5.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 617 TAQLQVELLQSQtkLSELEAQVRKLELERAQHRMLLESLQQRHQAdLELIEDAHRSRIKVLetSYQQREEQLRREKEVLS 696
Cdd:COG4913 607 DNRAKLAALEAE--LAELEEELAEAEERLEALEAELDALQERREA-LQRLAEYSWDEIDVA--SAEREIAELEAELERLD 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 697 AQHASYcREAEQARAELVAQHQRqmamAEQERDQEVARLRELQQAsilemRKDHEHQLQRlkmLKDQEIDAVTSATSHTR 776
Cdd:COG4913 682 ASSDDL-AALEEQLEELEAELEE----LEEELDELKGEIGRLEKE-----LEQAEEELDE---LQDRLEAAEDLARLELR 748
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1395777135 777 SLngiieqmekfssslntLSSRVEASHLTTSQQRELgiRQQDEQLRALQERLGRQQRDMEEERNR 841
Cdd:COG4913 749 AL----------------LEERFAAALGDAVERELR--ENLEERIDALRARLNRAEEELERAMRA 795
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
69-530 |
6.72e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 47.63 E-value: 6.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 69 KFLPKDSVEGL----AGADAEASSVSDADP---QVFLQNMKDLDSMDDDLFGRMKSHQ-------PSGKGAAKGPGKEGP 134
Cdd:PHA03247 2424 RFVGSEEIEELpfvsPGGDVLAGLAADGDPffaRTILGAPFSLSLLLGELFPGAPVYRrpaearfPFAAGAAPDPGGGGP 2503
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 135 SN-------HKPAGTLTANEkgytmPTKKPPPSSSKTGLQ-YKKFSFEDFEDPlAGLLSDEEEETATKLPAVERKPAPKS 206
Cdd:PHA03247 2504 PDpdappapSRLAPAILPDE-----PVGEPVHPRMLTWIRgLEELASDDAGDP-PPPLPPAAPPAAPDRSVPPPRPAPRP 2577
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 207 PGAAAG---QGPSVPLTP--GDTPIrkkellfDEGDDIMTTLGFEDSPKAERKKTGDQEGPLPARSkldELLGRGTAAkl 281
Cdd:PHA03247 2578 SEPAVTsraRRPDAPPQSarPRAPV-------DDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAAN---EPDPHPPPT-- 2645
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 282 lTRPGTGERREfqldkkyqKMGGEESVPARDKEDSwddetltfgayKPTVASSEGRQSRRQS----VSRFLGEGGPDPKG 357
Cdd:PHA03247 2646 -VPPPERPRDD--------PAPGRVSRPRRARRLG-----------RAAQASSPPQRPRRRAarptVGSLTSLADPPPPP 2705
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 358 ESlgfKQSSPPASSPIHPRKGGADWLGLKD--NDLDLLSPSPVQKAQQEDSPMTPSLLPPTNQPSAPEPQSAPTGLPSAA 435
Cdd:PHA03247 2706 PT---PEPAPHALVSATPLPPGPAAARQASpaLPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRR 2782
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 436 KPPAKGArpSLKASQASSPKASEEKedDWLSHVISQKKSQNLAREERAGPPKDLASLGSLGQTPSGSLPVAQVLEQ--AP 513
Cdd:PHA03247 2783 LTRPAVA--SLSESRESLPSPWDPA--DPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGsvAP 2858
|
490
....*....|....*..
gi 1395777135 514 AGEASKPTTQGMAAVRP 530
Cdd:PHA03247 2859 GGDVRRRPPSRSPAAKP 2875
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
700-1093 |
1.01e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.87 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 700 ASYCREAEQARaelvaQHQRQMAMAEQERDQEVARLRELQQASIlEMRKDHEHQLQRLKMLkdqEIDaVTSATSHtrsln 779
Cdd:COG3096 271 ADYMRHANERR-----ELSERALELRRELFGARRQLAEEQYRLV-EMARELEELSARESDL---EQD-YQAASDH----- 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 780 giieqmekfsssLNTLSSRVEashlttsQQRELGIRQQDeqLRALQERLgRQQRDMEEERNRLQEvigkmevRLSEQSRL 859
Cdd:COG3096 336 ------------LNLVQTALR-------QQEKIERYQED--LEELTERL-EEQEEVVEEAAEQLA-------EAEARLEA 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 860 LEQErwrVAAEKTKAESAQRTLEEQ--RKIMVQQiAMEReeLERAKSALLEEQKSVMNkcgeerrrlAAEWAEYFTQQKL 937
Cdd:COG3096 387 AEEE---VDSLKSQLADYQQALDVQqtRAIQYQQ-AVQA--LEKARALCGLPDLTPEN---------AEDYLAAFRAKEQ 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 938 SKERAEREAERAMH----ADSQREGTIISLTK-------EQA-----ELTVRACELRAKEEKL------LAEREALERER 995
Cdd:COG3096 452 QATEEVLELEQKLSvadaARRQFEKAYELVCKiageverSQAwqtarELLRRYRSQQALAQRLqqlraqLAELEQRLRQQ 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 996 QELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQRVHQehlsl 1075
Cdd:COG3096 532 QNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLA----- 606
|
410
....*....|....*...
gi 1395777135 1076 AQQRLQldRVRQEVPASL 1093
Cdd:COG3096 607 AQDALE--RLREQSGEAL 622
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
609-900 |
1.03e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 609 AQGQLQSSTAQLQVELLQSQTKLSELeaqVRKLELERAQHR----------MLLESLQQRHQADLELIE------DAHRS 672
Cdd:COG3206 74 SSLSASDSPLETQIEILKSRPVLERV---VDKLNLDEDPLGeeasreaaieRLRKNLTVEPVKGSNVIEisytspDPELA 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 673 RIKV-------LETSYQQREEQLRREKEVLSAQHASYCREAEQARAELVA-QHQRQMAMAEQERDQEVARLREL--QQAS 742
Cdd:COG3206 151 AAVAnalaeayLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEfRQKNGLVDLSEEAKLLLQQLSELesQLAE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 743 ILEMRKDHEHQLQRLKMLKDQEIDAVTSATSHTRsLNGIIEQMEKFSSSLNTLSSRVEASHLTtsqqrelgIRQQDEQLR 822
Cdd:COG3206 231 ARAELAEAEARLAALRAQLGSGPDALPELLQSPV-IQQLRAQLAELEAELAELSARYTPNHPD--------VIALRAQIA 301
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1395777135 823 ALQERLGRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMvQQIAMEREELE 900
Cdd:COG3206 302 ALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELY-ESLLQRLEEAR 378
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
831-1071 |
1.17e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 831 QQRDMEEERNRLQEVIGKMEvRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALLEEQ 910
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIA-ELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 911 KSVMNKCGEERRRLAAewaeyftqqklskeraereaeraMHADSQREGTIISLTKEQAELTVRACE-LRAKEEKLLAERE 989
Cdd:COG4942 97 AELEAQKEELAELLRA-----------------------LYRLGRQPPLALLLSPEDFLDAVRRLQyLKYLAPARREQAE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 990 ALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQRVH 1069
Cdd:COG4942 154 ELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
..
gi 1395777135 1070 QE 1071
Cdd:COG4942 234 AE 235
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
603-924 |
1.19e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.65 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 603 QKQLLAAQGQ------LQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQA----DLELIEDAHRS 672
Cdd:pfam15921 447 ERQMAAIQGKneslekVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAieatNAEITKLRSRV 526
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 673 RIKVLETSYQQREEQ----LRREKEVLSAQHA------SYCREAEQARAELVAQHQR-----QMAMAEQERDQEVARLrE 737
Cdd:pfam15921 527 DLKLQELQHLKNEGDhlrnVQTECEALKLQMAekdkviEILRQQIENMTQLVGQHGRtagamQVEKAQLEKEINDRRL-E 605
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 738 LQQASILEMRKDHE-HQLQ-RLKMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTlsSRVEASHLTTSQQ-RELGI 814
Cdd:pfam15921 606 LQEFKILKDKKDAKiRELEaRVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKT--SRNELNSLSEDYEvLKRNF 683
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 815 RQQDEQLRALQERLGRQ----QRDMEEERNRLQEVIG-----------------------------------------KM 849
Cdd:pfam15921 684 RNKSEEMETTTNKLKMQlksaQSELEQTRNTLKSMEGsdghamkvamgmqkqitakrgqidalqskiqfleeamtnanKE 763
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1395777135 850 EVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAkSALLEEQKSVMNKCGEERRRL 924
Cdd:pfam15921 764 KHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKA-SLQFAECQDIIQRQEQESVRL 837
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
874-1084 |
1.42e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 874 AESAQRTLEEQRKIMvQQIAMEREELERAKSALleeqksvmnkcgEERRRLAAEWAEYFTQQKLSKERAEREaeramhad 953
Cdd:COG4913 240 AHEALEDAREQIELL-EPIRELAERYAAARERL------------AELEYLRAALRLWFAQRRLELLEAELE-------- 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 954 sQREGTIISLTKEQAELTVRACELRAKEEKLLAER--------EALERERQELRLEKDRLHKASLRLQARAQEVEHMSKV 1025
Cdd:COG4913 299 -ELRAELARLEAELERLEARLDALREELDELEAQIrgnggdrlEQLEREIERLERELEERERRRARLEALLAALGLPLPA 377
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1395777135 1026 ASKKYEEGEQALQEAQQMQNEQQGRLQVVQ----RQQEWLRQQEQRVHQEHLSLAQQRLQLDR 1084
Cdd:COG4913 378 SAEEFAALRAEAAALLEALEEELEALEEALaeaeAALRDLRRELRELEAEIASLERRKSNIPA 440
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
708-927 |
1.59e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 708 QARAELVAQHQRQMAMAEQERDQEVARLRELQQAsilemRKDHEHQLQRLkmlkDQEIDAVTsatshtRSLNGIIEQMEK 787
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKE-----EKALLKQLAAL----ERRIAALA------RRIRALEQELAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 788 FSSSLNTLSSRVEAshlttsQQRELGIRQQD--EQLRALQeRLGRQQ---------------------RDMEEERNRLQE 844
Cdd:COG4942 81 LEAELAELEKEIAE------LRAELEAQKEElaELLRALY-RLGRQPplalllspedfldavrrlqylKYLAPARREQAE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 845 VIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLE---EQRKIMVQQIAMEREELERAKSALLEEQKSVMNKCGEER 921
Cdd:COG4942 154 ELRADLAELAALRAELEAERAELEALLAELEEERAALEalkAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
....*.
gi 1395777135 922 RRLAAE 927
Cdd:COG4942 234 AEAAAA 239
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
604-876 |
2.39e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 2.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 604 KQLLAAQG---QLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRikvLETS 680
Cdd:COG4913 678 ERLDASSDdlaALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL---LEER 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 681 YQQ--REEQLRREKEVLSAQHASYCREAEQARAELV---AQHQRQMAMAEQERDQEVARLRELQ------QASILEmrkD 749
Cdd:COG4913 755 FAAalGDAVERELRENLEERIDALRARLNRAEEELEramRAFNREWPAETADLDADLESLPEYLalldrlEEDGLP---E 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 750 HEHQLQRLkmLKDQEIDAVTS-ATSHTRSLNGIIEQMEKfsssLNTLSSRVEAS-----HLTTSQQRELGIRQQDEQLRA 823
Cdd:COG4913 832 YEERFKEL--LNENSIEFVADlLSKLRRAIREIKERIDP----LNDSLKRIPFGpgrylRLEARPRPDPEVREFRQELRA 905
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 824 LQERLGRQQRDMEEER-NRLQEVIGKM-----EVRLSEQSRLLEQERWRV-AAEKTKAES 876
Cdd:COG4913 906 VTSGASLFDEELSEARfAALKRLIERLrseeeESDRRWRARVLDVRNHLEfDAEEIDRED 965
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
602-1081 |
3.07e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.33 E-value: 3.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 602 YQKQLLAAQGQLQSSTAQLQvELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLeTSY 681
Cdd:COG3096 506 SQQALAQRLQQLRAQLAELE-QRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQR-SEL 583
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 682 QQREEQLRREKEVLSAQhASYCREAEQARAELVAQ------------HQRQMAM-----AEQERDQEVARLRELQQAsIL 744
Cdd:COG3096 584 RQQLEQLRARIKELAAR-APAWLAAQDALERLREQsgealadsqevtAAMQQLLerereATVERDELAARKQALESQ-IE 661
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 745 EMRKDHEHQLQRLKMLKDQ-------EI-DAVT-------SA----TSH---TRSLNGIIEQMEKFSSSLNTL------- 795
Cdd:COG3096 662 RLSQPGGAEDPRLLALAERlggvllsEIyDDVTledapyfSAlygpARHaivVPDLSAVKEQLAGLEDCPEDLyliegdp 741
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 796 SSRVEASHLTTSQQRELGIRQQDEQLR-------ALQERLGRQQR--DMEEERNRLQEVIGKMEVRLSEQSRLLEQERWR 866
Cdd:COG3096 742 DSFDDSVFDAEELEDAVVVKLSDRQWRysrfpevPLFGRAAREKRleELRAERDELAEQYAKASFDVQKLQRLHQAFSQF 821
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 867 VAAEKTKA-----ESAQRTLEEQRKIMVQQIAMEREELERAKSAL--LEEQKSVMNKCGEERRRLAAEwaeyftqqklsk 939
Cdd:COG3096 822 VGGHLAVAfapdpEAELAALRQRRSELERELAQHRAQEQQLRQQLdqLKEQLQLLNKLLPQANLLADE------------ 889
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 940 eraereaeraMHADSQREGTIISLTKEQAELTVRACELRAKE-EKLLA-------EREALERERQELRLEKDRLHKASLR 1011
Cdd:COG3096 890 ----------TLADRLEELREELDAAQEAQAFIQQHGKALAQlEPLVAvlqsdpeQFEQLQADYLQAKEQQRRLKQQIFA 959
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 1012 LQARAQEVEHMSkvaskkYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQeQRVHQEHLSLAQQRLQ 1081
Cdd:COG3096 960 LSEVVQRRPHFS------YEDAVGLLGENSDLNEKLRARLEQAEEARREAREQ-LRQAQAQYSQYNQVLA 1022
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
619-875 |
3.19e-04 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 44.84 E-value: 3.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 619 QLQVELLQSQTKLSELEAQVRKLELERAQhrMLLESLQQRHQADLELIE---DAHR---SRIKVLETSYQQREEQLRR-E 691
Cdd:pfam06160 234 NVDKEIQQLEEQLEENLALLENLELDEAE--EALEEIEERIDQLYDLLEkevDAKKyveKNLPEIEDYLEHAEEQNKElK 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 692 KEVLSAQHASYCREAEqarAELVAQHQRQMAMAEQERDQEVARLRELQQASIlEMRKDHEHQLQRLKMLKDQEIDAVTSa 771
Cdd:pfam06160 312 EELERVQQSYTLNENE---LERVRGLEKQLEELEKRYDEIVERLEEKEVAYS-ELQEELEEILEQLEEIEEEQEEFKES- 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 772 tshtrsLNGII-------EQMEKFSSSLNTLSSRVEASHLT-TSQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQ 843
Cdd:pfam06160 387 ------LQSLRkdelearEKLDEFKLELREIKRLVEKSNLPgLPESYLDYFFDVSDEIEDLADELNEVPLNMDEVNRLLD 460
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1395777135 844 EVIGKMEV------RLSEQSRLLEQ-----ERWR-----VAAEKTKAE 875
Cdd:pfam06160 461 EAQDDVDTlyekteELIDNATLAEQliqyaNRYRssnpeVAEALTEAE 508
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
637-1096 |
3.30e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.95 E-value: 3.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 637 QVRKLELERAQHRMLLESLQQRHqADLELIEDAHRSRIKVLETSYQQREEQLRREKEVLSAQHA------------SYCR 704
Cdd:PRK04863 287 EALELRRELYTSRRQLAAEQYRL-VEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKieryqadleeleERLE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 705 EAEQARA---ELVAQHQRQMAMAEQERDQEVARLRELQQASILEMRKDHEHQlqrlkmlkdQEIDAVTSAtshtRSLNGI 781
Cdd:PRK04863 366 EQNEVVEeadEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQ---------QAVQALERA----KQLCGL 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 782 IeqmekfSSSLNTLSSRVEAshLTTSQQrelgirQQDEQLRALQERLgrqqrDMEEERNRLQEVIGKMEVRLS-EQSRll 860
Cdd:PRK04863 433 P------DLTADNAEDWLEE--FQAKEQ------EATEELLSLEQKL-----SVAQAAHSQFEQAYQLVRKIAgEVSR-- 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 861 eQERWRVAAEKTKAESAQRTLEEQrkimVQQIAMEREELERAksalLEEQKSVmnkcgeerRRLAAEWaeyftQQKLSKE 940
Cdd:PRK04863 492 -SEAWDVARELLRRLREQRHLAEQ----LQQLRMRLSELEQR----LRQQQRA--------ERLLAEF-----CKRLGKN 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 941 RAEREAERAMHAdsQREGTIISLTKEQAELTVRACELRAKEEKLLAEREALERERQELRLEKDRLhkaslrlqaraqeve 1020
Cdd:PRK04863 550 LDDEDELEQLQE--ELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDAL--------------- 612
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1395777135 1021 hmskvaSKKYEEGEQALQEAQQMQNeqqgrlqvvQRQQEWLRQQEQRVHQEHLSLAQQRL--QLDRVRQEVPASLPGL 1096
Cdd:PRK04863 613 ------ARLREQSGEEFEDSQDVTE---------YMQQLLERERELTVERDELAARKQALdeEIERLSQPGGSEDPRL 675
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
603-886 |
3.41e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.96 E-value: 3.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 603 QKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQAD------LELIEDAHRSRIKV 676
Cdd:pfam02463 719 AEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEerekteKLKVEEEKEEKLKA 798
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 677 LETSYQ--------QREEQLRREKEVLSAQHASYCREAEQARAELVAQHQRQMAMAEQERDQEVARLRELQQASILEMRK 748
Cdd:pfam02463 799 QEEELRaleeelkeEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEE 878
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 749 DHE-------HQLQRLKMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQRELGIRQQDEQL 821
Cdd:pfam02463 879 LEEqklkdelESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEE 958
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1395777135 822 RalqERLGRQQRDMEEERNRLQEVIgKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRK 886
Cdd:pfam02463 959 E---ERNKRLLLAKEELGKVNLMAI-EEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRL 1019
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
799-912 |
3.84e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 3.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 799 VEASHLTTSQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQ 878
Cdd:PRK12704 44 LEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQ 123
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1395777135 879 RTLEEQRKIMVQQIAMEREELER--------AKSALLEEQKS 912
Cdd:PRK12704 124 QELEKKEEELEELIEEQLQELERisgltaeeAKEILLEKVEE 165
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
682-1021 |
4.93e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 4.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 682 QQREEQLRREKEVLSAQHASY------CREAEQARAELVAQHqrqMAMAEQERDQEVARLRELQQASILEMRKDHEHQLQ 755
Cdd:COG3096 784 EKRLEELRAERDELAEQYAKAsfdvqkLQRLHQAFSQFVGGH---LAVAFAPDPEAELAALRQRRSELERELAQHRAQEQ 860
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 756 RLKmlkdqeiDAVTSATSHTRSLNGIIEQMEKFSSslNTLSSRVEA--SHLTTSQQRELGIRQQDEQLRALQERLGRQQR 833
Cdd:COG3096 861 QLR-------QQLDQLKEQLQLLNKLLPQANLLAD--ETLADRLEElrEELDAAQEAQAFIQQHGKALAQLEPLVAVLQS 931
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 834 DMEEERNRLQEVigkmeVRLSEQSRLLEQERW---RVAAEKT--KAESAQRTLEEQRKiMVQQIameREELERAksallE 908
Cdd:COG3096 932 DPEQFEQLQADY-----LQAKEQQRRLKQQIFalsEVVQRRPhfSYEDAVGLLGENSD-LNEKL---RARLEQA-----E 997
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 909 EQKSvmnKCGEERRRLAAEWAEYftQQKLSKERAEREAERAMHADSQRegtiisltkEQAELTVRA---CELRAKEEK-- 983
Cdd:COG3096 998 EARR---EAREQLRQAQAQYSQY--NQVLASLKSSRDAKQQTLQELEQ---------ELEELGVQAdaeAEERARIRRde 1063
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1395777135 984 -------LLAEREALERERQELRLEKDRLHKASLRL-----QARAQEVEH 1021
Cdd:COG3096 1064 lheelsqNRSRRSQLEKQLTRCEAEMDSLQKRLRKAerdykQEREQVVQA 1113
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
610-1040 |
5.04e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.65 E-value: 5.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 610 QGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAhRSRIKVLETSYQQREEQLR 689
Cdd:TIGR00606 690 EAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPEL-RNKLQKVNRDIQRLKNDIE 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 690 REKEVLSAQHASYcREAEQARAELVAQHQRQMAMAEQER--DQEVARLRELQ-QASILEMRKDHEHqlqrlkmlKDQEID 766
Cdd:TIGR00606 769 EQETLLGTIMPEE-ESAKVCLTDVTIMERFQMELKDVERkiAQQAAKLQGSDlDRTVQQVNQEKQE--------KQHELD 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 767 AVTSATSHTRSL-NGIIEQMEKFSSSLNTLSSrvEASHLTTSQQRELGIRQQDEQLRALQERLGRQQRDMEEERNRLQEV 845
Cdd:TIGR00606 840 TVVSKIELNRKLiQDQQEQIQHLKSKTNELKS--EKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETF 917
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 846 IGKmevrlseqsrLLEQERWRVAAEKTKAESAQRTLEEQRKiMVQQIAMEREELERAKSALLEEQKSvmnkcgEERRRLA 925
Cdd:TIGR00606 918 LEK----------DQQEKEELISSKETSNKKAQDKVNDIKE-KVKNIHGYMKDIENKIQDGKDDYLK------QKETELN 980
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 926 AEWAEYFTQQKLSKERAEREAERAMHADSQREGTiiSLTKEQAELTVRACELRAKEEKL------------LAEREALER 993
Cdd:TIGR00606 981 TVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQE--RWLQDNLTLRKRENELKEVEEELkqhlkemgqmqvLQMKQEHQK 1058
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 1395777135 994 ERQELRLEKDRLHKASLRLQARAQEVEHM-SKVASKKYEEGEQALQEA 1040
Cdd:TIGR00606 1059 LEENIDLIKRNHVLALGRQKGYEKEIKHFkKELREPQFRDAEEKYREM 1106
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
603-1028 |
6.30e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.01 E-value: 6.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 603 QKQLLAAQGQLQSSTAQLQVEL----LQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRikvle 678
Cdd:pfam01576 210 KRKLEGESTDLQEQIAELQAQIaelrAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESER----- 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 679 tSYQQREEQLRREKEvlsaqhasycREAEQARAELvaQHQRQMAMAEQE----RDQEVARLRElqqaSILEMRKDHEHQL 754
Cdd:pfam01576 285 -AARNKAEKQRRDLG----------EELEALKTEL--EDTLDTTAAQQElrskREQEVTELKK----ALEEETRSHEAQL 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 755 QRLKMLKDQEIDAVTSATSHTRSLNGiieQMEKFSSSLNTLSSRVEASHLTTSQQR---ELGIRQQDEQLRALQERLGrq 831
Cdd:pfam01576 348 QEMRQKHTQALEELTEQLEQAKRNKA---NLEKAKQALESENAELQAELRTLQQAKqdsEHKRKKLEGQLQELQARLS-- 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 832 qrDMEEERNRLQEVIGKMEVRLSEQSRLLE--------------------QERWRVAAEKTKAE----SAQRTLEEQRKI 887
Cdd:pfam01576 423 --ESERQRAELAEKLSKLQSELESVSSLLNeaegkniklskdvsslesqlQDTQELLQEETRQKlnlsTRLRQLEDERNS 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 888 MVQQIAME---REELERAKSAL----------LEEQKSVMNKCGEERRRLAAEwAEYFTQQ---------KLSKERAERE 945
Cdd:pfam01576 501 LQEQLEEEeeaKRNVERQLSTLqaqlsdmkkkLEEDAGTLEALEEGKKRLQRE-LEALTQQleekaaaydKLEKTKNRLQ 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 946 AE---RAMHADSQREgTIISLTKEQAELTV-----RACELRAKEEKLLAEREALERERQELRL----EKDRLHKASLRLQ 1013
Cdd:pfam01576 580 QElddLLVDLDHQRQ-LVSNLEKKQKKFDQmlaeeKAISARYAEERDRAEAEAREKETRALSLaralEEALEAKEELERT 658
|
490
....*....|....*
gi 1395777135 1014 ARAQEVEHMSKVASK 1028
Cdd:pfam01576 659 NKQLRAEMEDLVSSK 673
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
46-290 |
6.53e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.16 E-value: 6.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 46 KPAEPASHAKDTASSPQWQASKAKFLPKDSVEG--LAGADAEASSVSDADPQvflQNMKDLDSMDDDL--------FGRM 115
Cdd:PHA03247 267 RAPETARGATGPPPPPEAAAPNGAAAPPDGVWGaaLAGAPLALPAPPDPPPP---APAGDAEEEDDEDgamevvspLPRP 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 116 KSHQPSGKGAAKGPGKEGPSNHKpagTLTANEKgytMPTKKPPPSSSKTGLQYKKFSFEdfedplAGLLSDEEEETATKL 195
Cdd:PHA03247 344 RQHYPLGFPKRRRPTWTPPSSLE---DLSAGRH---HPKRASLPTRKRRSARHAATPFA------RGPGGDDQTRPAAPV 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 196 PAveRKPAPKSPGAAAGQ--GPSVPLTPG-----DTPIRKKELLFDEGDDIMTTLGFEDSPKAERKKTGDQEGPLPARSK 268
Cdd:PHA03247 412 PA--SVPTPAPTPVPASAppPPATPLPSAepgsdDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRPPEPPGAD 489
|
250 260
....*....|....*....|....*..
gi 1395777135 269 LDELLGR-----GTAAKLLTRPGTGER 290
Cdd:PHA03247 490 LAELLGRhpdtaGTVVRLAAREAAIAR 516
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
613-1081 |
7.69e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 7.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 613 LQSSTAQLQVELLQS-QTKLSELEaqvRKLELERAQHRMLLESLQQRHQ-----ADLELIEDAHRSRIKVLET---SYQQ 683
Cdd:PRK04863 503 RRLREQRHLAEQLQQlRMRLSELE---QRLRQQQRAERLLAEFCKRLGKnlddeDELEQLQEELEARLESLSEsvsEARE 579
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 684 REEQLRREKEVLSAQHASYCREAEQARA-----------------------ELVAQHQRQMAMAEQERDQEVARLRELQ- 739
Cdd:PRK04863 580 RRMALRQQLEQLQARIQRLAARAPAWLAaqdalarlreqsgeefedsqdvtEYMQQLLERERELTVERDELAARKQALDe 659
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 740 QASILEMRKDHEhqLQRLKMLKDQ-------------------EIDAVTSATSH---TRSLNGIIEQMEKFSSSLNTL-- 795
Cdd:PRK04863 660 EIERLSQPGGSE--DPRLNALAERfggvllseiyddvsledapYFSALYGPARHaivVPDLSDAAEQLAGLEDCPEDLyl 737
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 796 ---------SSRVEASHLttsqQRELGIRQQDEQLRALQ----ERLGRQQRD-----MEEERNRLQEVIGKMEVRLSEQS 857
Cdd:PRK04863 738 iegdpdsfdDSVFSVEEL----EKAVVVKIADRQWRYSRfpevPLFGRAAREkrieqLRAEREELAERYATLSFDVQKLQ 813
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 858 RLLEQERWRVAAEKTKA-----ESAQRTLEEQRKIMVQQIAMEREELERAKSAL--LEEQKSVMNKCGEERRRLAAEwae 930
Cdd:PRK04863 814 RLHQAFSRFIGSHLAVAfeadpEAELRQLNRRRVELERALADHESQEQQQRSQLeqAKEGLSALNRLLPRLNLLADE--- 890
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 931 yFTQQKLSKERAEREAERAMHADSQREGTIISLTKEQAELtvraceLRAKEEKLLAEREALERERQELRLekdrlhkasL 1010
Cdd:PRK04863 891 -TLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSV------LQSDPEQFEQLKQDYQQAQQTQRD---------A 954
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1395777135 1011 RLQARAQeVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQeQRVHQEHLSLAQQRLQ 1081
Cdd:PRK04863 955 KQQAFAL-TEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQ-LRQAQAQLAQYNQVLA 1023
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
602-861 |
8.09e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.80 E-value: 8.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 602 YQKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRML--LESLQQRHQADLELIE---DAHRSRIKV 676
Cdd:TIGR00618 633 HLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALqkMQSEKEQLTYWKEMLAqcqTLLRELETH 712
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 677 LETSYQQREEQlrrekevlsaQHASYCREAEQARAELVAQHQRQMAMAEQE---RDQEVARLRELQQASILEMRKDHEHQ 753
Cdd:TIGR00618 713 IEEYDREFNEI----------ENASSSLGSDLAAREDALNQSLKELMHQARtvlKARTEAHFNNNEEVTAALQTGAELSH 782
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 754 LQRLKMLKDQEIDAVTSATSHTRSlngiiEQMEKFSSSLNTLSSRVEashltTSQQRELGIRQQDEQLRALQERLGRQQR 833
Cdd:TIGR00618 783 LAAEIQFFNRLREEDTHLLKTLEA-----EIGQEIPSDEDILNLQCE-----TLVQEEEQFLSRLEEKSATLGEITHQLL 852
|
250 260
....*....|....*....|....*...
gi 1395777135 834 DMEEERNRLQEVIgKMEVRLSEQSRLLE 861
Cdd:TIGR00618 853 KYEECSKQLAQLT-QEQAKIIQLSDKLN 879
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
826-1087 |
8.19e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 8.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 826 ERLGRQQRDME---EERNRLQEVIGKmEVRLSEQSRLLEQERwrvAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERA 902
Cdd:PTZ00121 1070 EGLKPSYKDFDfdaKEDNRADEATEE-AFGKAEEAKKTETGK---AEEARKAEEAKKKAEDARKAEEARKAEDARKAEEA 1145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 903 KSALLEEQKSVMNKCGEERRRLAAEWAEyftqqklskeraereaeRAMHADSQRegtiisltkeQAELTVRACELRAKEE 982
Cdd:PTZ00121 1146 RKAEDAKRVEIARKAEDARKAEEARKAE-----------------DAKKAEAAR----------KAEEVRKAEELRKAED 1198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 983 KLLAerEALERERQELRLEKDRLHKASLRLQA--RAQEVEhmskvasKKYEEGEQALQE--AQQMQNEQQGRLQVVQRQQ 1058
Cdd:PTZ00121 1199 ARKA--EAARKAEEERKAEEARKAEDAKKAEAvkKAEEAK-------KDAEEAKKAEEErnNEEIRKFEEARMAHFARRQ 1269
|
250 260
....*....|....*....|....*....
gi 1395777135 1059 EWLRQQEQRVHQEhLSLAQQRLQLDRVRQ 1087
Cdd:PTZ00121 1270 AAIKAEEARKADE-LKKAEEKKKADEAKK 1297
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
605-1009 |
8.39e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.79 E-value: 8.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 605 QLLAAQGQLQSSTAQLQVE---LLQSQTKLSELEAQVRKLELE----RAQHRMLLESLQQ-----RHQADLELIEDAHRS 672
Cdd:COG3096 286 RALELRRELFGARRQLAEEqyrLVEMARELEELSARESDLEQDyqaaSDHLNLVQTALRQqekieRYQEDLEELTERLEE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 673 RIKVLET---SYQQREEQLRR-EKEV--LSAQHASYCR--EAEQARAElvaqhQRQMAMAEQERDQEVARLRELQQASIl 744
Cdd:COG3096 366 QEEVVEEaaeQLAEAEARLEAaEEEVdsLKSQLADYQQalDVQQTRAI-----QYQQAVQALEKARALCGLPDLTPENA- 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 745 emrKDHEHQLQRlkmlKDQEIDAVTSATSHTRSL-NGIIEQMEKFSSSLNTLSSRVEAShlTTSQQrelgIRQQDEQLRA 823
Cdd:COG3096 440 ---EDYLAAFRA----KEQQATEEVLELEQKLSVaDAARRQFEKAYELVCKIAGEVERS--QAWQT----ARELLRRYRS 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 824 LQERLGRQQrdmeeernrlqevigKMEVRLSEQSRLLEQERwrvaaektkaeSAQRTLEEQRKIMVQQI--AMEREELER 901
Cdd:COG3096 507 QQALAQRLQ---------------QLRAQLAELEQRLRQQQ-----------NAERLLEEFCQRIGQQLdaAEELEELLA 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 902 AKSALLEEQKSVMNKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQREGTIISLTKEQAELTVRACELRaKE 981
Cdd:COG3096 561 ELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLE-RE 639
|
410 420
....*....|....*....|....*...
gi 1395777135 982 EKLLAEREALERERQELRLEKDRLHKAS 1009
Cdd:COG3096 640 REATVERDELAARKQALESQIERLSQPG 667
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
603-1046 |
9.51e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 9.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 603 QKQLLAAQGQLQSSTAQL---QVELLQSQTKLSELEAQVRKLELEraqhrmlLESLQQRHQADLeliedahrsrIKVLET 679
Cdd:TIGR04523 252 QTQLNQLKDEQNKIKKQLsekQKELEQNNKKIKELEKQLNQLKSE-------ISDLNNQKEQDW----------NKELKS 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 680 SYQQREEQLRREKEVLSaqhasycrEAEQARAELvaqhQRQMAMAEQERDQevarlRELQQASILEMRKDHEHQLQRLKM 759
Cdd:TIGR04523 315 ELKNQEKKLEEIQNQIS--------QNNKIISQL----NEQISQLKKELTN-----SESENSEKQRELEEKQNEIEKLKK 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 760 LKDQEIDAVTSATSHTRSLNGIIEQMEKfssslntlssrveashltTSQQRELGIRQQDEQLRALQErlgrQQRDMEEER 839
Cdd:TIGR04523 378 ENQSYKQEIKNLESQINDLESKIQNQEK------------------LNQQKDEQIKKLQQEKELLEK----EIERLKETI 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 840 NRLQEVIgkmevrlseqSRLLEQErwrvAAEKTKAESAQRTLEEQRkimvQQIAMEREELERAKSALLEEQKSVMNKCGE 919
Cdd:TIGR04523 436 IKNNSEI----------KDLTNQD----SVKELIIKNLDNTRESLE----TQLKVLSRSINKIKQNLEQKQKELKSKEKE 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 920 errrlaaewAEYFTQQKlskeraereaeramhadSQREGTIISLTKEQAELTVracelraKEEKLLAEREALERERQEL- 998
Cdd:TIGR04523 498 ---------LKKLNEEK-----------------KELEEKVKDLTKKISSLKE-------KIEKLESEKKEKESKISDLe 544
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 1395777135 999 --------RLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNE 1046
Cdd:TIGR04523 545 delnkddfELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKD 600
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
603-885 |
1.00e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 43.13 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 603 QKQLLAAQGQLQSSTAQ---LQVELLQSQTKLSELEAQVRKLelerAQHRMLLESLQQRHQA-----------------D 662
Cdd:pfam19220 124 ERQLAAETEQNRALEEEnkaLREEAQAAEKALQRAEGELATA----RERLALLEQENRRLQAlseeqaaelaeltrrlaE 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 663 LELIEDAHRSRIKVLETSYQqrEEQLRREKevLSAQHASycrEAEQARAELVAQHQR------QMAMAEQERDQEVARLR 736
Cdd:pfam19220 200 LETQLDATRARLRALEGQLA--AEQAERER--AEAQLEE---AVEAHRAERASLRMKlealtaRAAATEQLLAEARNQLR 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 737 ELQQASILEMRKDHEHQLQRLKmlKDQEIDAVTSATSHTRSLNGIIEQMEkfssslNTLSSRVEAshLTTS-QQRELGIR 815
Cdd:pfam19220 273 DRDEAIRAAERRLKEASIERDT--LERRLAGLEADLERRTQQFQEMQRAR------AELEERAEM--LTKAlAAKDAALE 342
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 816 QQDEQLRALQERLGRQQRDMEEERNRLQEVIGkmevRLSEQsrlLEQERwrvaAEKTKAESAQRTLEEQR 885
Cdd:pfam19220 343 RAEERIASLSDRIAELTKRFEVERAALEQANR----RLKEE---LQRER----AERALAQGALEIARESR 401
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
602-939 |
1.08e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.53 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 602 YQKQLLAAQGQLQ------SSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRM----LLESLQQRHQADLELIEDAHR 671
Cdd:COG5022 873 SAQRVELAERQLQelkidvKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTeliaRLKKLLNNIDLEEGPSIEYVK 952
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 672 SRIKVletSYQQREEQLRREKEVLSA---QHASYCREAEQARAELVaQHQRQMAMAEQERDQ---EVARLRELQQASI-- 743
Cdd:COG5022 953 LPELN---KLHEVESKLKETSEEYEDllkKSTILVREGNKANSELK-NFKKELAELSKQYGAlqeSTKQLKELPVEVAel 1028
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 744 --LEMRKDHEH----------QLQRLKMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQRE 811
Cdd:COG5022 1029 qsASKIISSEStelsilkplqKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNL 1108
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 812 LGIRQQDEQLRALQERLGRQQRdMEEERNRLQEVIGKMEVRLSEQSRLLEQERWRVAAEktkaesaQRTLEEQRKIMVQQ 891
Cdd:COG5022 1109 VKPANVLQFIVAQMIKLNLLQE-ISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLE-------ALPSPPPFAALSEK 1180
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1395777135 892 IAMEREELERAKSALLEEQKSVMNKCGEERRRLAAEWAEYFTQQKLSK 939
Cdd:COG5022 1181 RLYQSALYDEKSKLSSSEVNDLKNELIALFSKIFSGWPRGDKLKKLIS 1228
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
824-1089 |
1.08e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 824 LQERLGRQQRDMEEERNRLQEvigKMEVRLSEQSRLLEqerwrVAAEKTKAESAQRTLEE-QRKIMVQQIAMEREELERA 902
Cdd:COG3206 105 LDEDPLGEEASREAAIERLRK---NLTVEPVKGSNVIE-----ISYTSPDPELAAAVANAlAEAYLEQNLELRREEARKA 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 903 kSALLEEQksvMNKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQREgtIISLTKEQAELTVRACELRAKEE 982
Cdd:COG3206 177 -LEFLEEQ---LPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQ--LAEARAELAEAEARLAALRAQLG 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 983 ----------------KLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEhmskvaskkyeegEQALQEAQQMQNE 1046
Cdd:COG3206 251 sgpdalpellqspviqQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALR-------------AQLQQEAQRILAS 317
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1395777135 1047 QQGRLQVVQRQQEWLRQQEQRVHQEHLSLAQQRLQLDRVRQEV 1089
Cdd:COG3206 318 LEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREV 360
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
603-1094 |
1.10e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 43.20 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 603 QKQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLETSYQ 682
Cdd:pfam07111 244 RQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKCRSLLNRWREKVFALMVQLK 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 683 QREEQLRREKEVLSAQHASYCREA-EQARAELVAQHQRQMAMAEQERDQEVARLRELQQASILEMRKdheHQLQRLKMLK 761
Cdd:pfam07111 324 AQDLEHRDSVKQLRGQVAELQEQVtSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEARR---RQQQQTASAE 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 762 DQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRV-----EASHLTTSQQRELGIRQQDEQLRALQERLGRQQRDME 836
Cdd:pfam07111 401 EQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLsyavrKVHTIKGLMARKVALAQLRQESCPPPPPAPPVDADLS 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 837 EERNRLQEVIGKMEVRLSEQSRLLEQErwrVAAEKTKAESAQRTLEEqrkiMVQQIameREELERAKSAL--LEEQKSVM 914
Cdd:pfam07111 481 LELEQLREERNRLDAELQLSAHLIQQE---VGRAREQGEAERQQLSE----VAQQL---EQELQRAQESLasVGQQLEVA 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 915 NKCGEERRRLAAEWAEYFTQQKlskeraereaeramhadsqrEGTIISLTKEQAELTVRACELRAKEEKLLAEREaleRE 994
Cdd:pfam07111 551 RQGQQESTEEAASLRQELTQQQ--------------------EIYGQALQEKVAEVETRLREQLSDTKRRLNEAR---RE 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 995 RQELRLEKDRLHKASLRLQARAQEVEHMSKVASKkyEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQRVHQEHLS 1074
Cdd:pfam07111 608 QAKAVVSLRQIQHRATQEKERNQELRRLQDEARK--EEGQRLARRVQELERDKNLMLATLQQEGLLSRYKQQRLLAVLPS 685
|
490 500
....*....|....*....|
gi 1395777135 1075 LAQQRLQLDRVRQEVPASLP 1094
Cdd:pfam07111 686 GLDKKSVVSSPRPECSASAP 705
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
802-1037 |
1.25e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 42.76 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 802 SHLTTSQQ----RELGIRQQDEQLRALQERLGRQQ-------RDMEEERNRLQEV----------IGKMEVRLSEQSRLL 860
Cdd:PRK11637 47 DQLKSIQQdiaaKEKSVRQQQQQRASLLAQLKKQEeaisqasRKLRETQNTLNQLnkqidelnasIAKLEQQQAAQERLL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 861 EQERwrVAAEKT----------KAESAQRT---------LEEQRKIMVQQIAMEREELERAKSALLEEQksvmnkcGEER 921
Cdd:PRK11637 127 AAQL--DAAFRQgehtglqlilSGEESQRGerilayfgyLNQARQETIAELKQTREELAAQKAELEEKQ-------SQQK 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 922 RRLAAEWAEyftQQKLSKeraereaeramhADSQREGTII----SLTKEQAELTvracELRAKEEKLL-----AEREALE 992
Cdd:PRK11637 198 TLLYEQQAQ---QQKLEQ------------ARNERKKTLTglesSLQKDQQQLS----ELRANESRLRdsiarAEREAKA 258
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1395777135 993 RERQELRlEKDRLhkaslrlqaRAQEVEHMSKVASKKYEEGEQAL 1037
Cdd:PRK11637 259 RAEREAR-EAARV---------RDKQKQAKRKGSTYKPTESERSL 293
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
966-1093 |
1.54e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 966 EQAELTVRACELRAKEEKLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEHmsKVASKKYEEGEQALQEAQQMQN 1045
Cdd:COG4913 275 EYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEA--QIRGNGGDRLEQLEREIERLER 352
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1395777135 1046 EQQGRLQVVQRQQEWLRQQEQRVHQEHLSLAQQRLQLDRVRQEVPASL 1093
Cdd:COG4913 353 ELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEEL 400
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
594-906 |
1.66e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.76 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 594 QSLLPGSGYQKQLLAAQGQLQSSTAQLQVELLQSQTKLSE--LEAQVRKLELERA-----QHRML------LESLQQRHQ 660
Cdd:COG5022 800 QPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEfsLKAEVLIQKFGRSlkakkRFSLLkketiyLQSAQRVEL 879
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 661 ADLELIE--DAHRSRIKVLETSYQQREEQLRREKEVLSAqhasycreaEQARAELVAQHQRQMAMAEQERDQEVARLREL 738
Cdd:COG5022 880 AERQLQElkIDVKSISSLKLVNLELESEIIELKKSLSSD---------LIENLEFKTELIARLKKLLNNIDLEEGPSIEY 950
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 739 QQASILEmrKDHEhQLQRLKMLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQRELgirqqD 818
Cdd:COG5022 951 VKLPELN--KLHE-VESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKEL-----P 1022
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 819 EQLRALQ--ERLGRQQRDMEEERNRLQEVIGKMEV---RLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIA 893
Cdd:COG5022 1023 VEVAELQsaSKIISSESTELSILKPLQKLKGLLLLennQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLE 1102
|
330
....*....|...
gi 1395777135 894 MEREELERAKSAL 906
Cdd:COG5022 1103 VTNRNLVKPANVL 1115
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
726-892 |
1.94e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 726 QERDQEVARLRElQQASILEMRKDHEHQLQRLKMLKDQEIDAVTSATSHTRSLNGIIEQ----MEKFSSSLNTLSSRVEA 801
Cdd:COG1579 13 QELDSELDRLEH-RLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEvearIKKYEEQLGNVRNNKEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 802 SHLttsqQRELgirqqdEQLRALQERLGRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTL 881
Cdd:COG1579 92 EAL----QKEI------ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEEL 161
|
170
....*....|.
gi 1395777135 882 EEQRKIMVQQI 892
Cdd:COG1579 162 EAEREELAAKI 172
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
683-1040 |
2.01e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 683 QREEQLRREKEVLSAQHASYCREAE------QARAELVAQHqrqMAMAEQErDQEVArLRELQQASILEMRK--DHEHQL 754
Cdd:PRK04863 786 KRIEQLRAEREELAERYATLSFDVQklqrlhQAFSRFIGSH---LAVAFEA-DPEAE-LRQLNRRRVELERAlaDHESQE 860
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 755 QRLKmlkdqeiDAVTSATSHTRSLNGIIEQMEKFSSslNTLSSRVEASH--LTTSQQRELGIRQQDEQLRAL-------- 824
Cdd:PRK04863 861 QQQR-------SQLEQAKEGLSALNRLLPRLNLLAD--ETLADRVEEIReqLDEAEEAKRFVQQHGNALAQLepivsvlq 931
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 825 --QERLGRQQRDMEEERNRLQevigkmevRLSEQSRLLEQERWRVAAekTKAESAQRTLEEQRKiMVQQIameREELERA 902
Cdd:PRK04863 932 sdPEQFEQLKQDYQQAQQTQR--------DAKQQAFALTEVVQRRAH--FSYEDAAEMLAKNSD-LNEKL---RQRLEQA 997
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 903 KSALLEeqksvmnkCGEERRRLAAEWAEYftQQKLSKERAEREAERAMHADSQRegtiisltkEQAELTVRACElrAKEE 982
Cdd:PRK04863 998 EQERTR--------AREQLRQAQAQLAQY--NQVLASLKSSYDAKRQMLQELKQ---------ELQDLGVPADS--GAEE 1056
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1395777135 983 KLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEA 1040
Cdd:PRK04863 1057 RARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNA 1114
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
623-1059 |
2.13e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 623 ELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKvLETSYQQREEQLRrEKEVLSAQHASY 702
Cdd:pfam01576 13 ELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRAR-LAARKQELEEILH-ELESRLEEEEER 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 703 CREAEQARAELvaqhQRQMAMAEQERDQEVARLRELQ------QASILEMRKD---HEHQLQRLKMLKDQEIDAVTSATS 773
Cdd:pfam01576 91 SQQLQNEKKKM----QQHIQDLEEQLDEEEAARQKLQlekvttEAKIKKLEEDillLEDQNSKLSKERKLLEERISEFTS 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 774 HtrslngIIEQMEKfSSSLNTLSSRVEA--SHLTTSQQRELGIRQQDEQLRalqERLGRQQRDMEEERNRLQEVIGKMEV 851
Cdd:pfam01576 167 N------LAEEEEK-AKSLSKLKNKHEAmiSDLEERLKKEEKGRQELEKAK---RKLEGESTDLQEQIAELQAQIAELRA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 852 RLSEQSRLLEQERWRVAAEKTKAESAQRTLEE-QRKIMVQQIAMEREELERAKSallEEQKSVMnkcGEERRRLAAEWAE 930
Cdd:pfam01576 237 QLAKKEEELQAALARLEEETAQKNNALKKIRElEAQISELQEDLESERAARNKA---EKQRRDL---GEELEALKTELED 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 931 YF----TQQKLSkeraereaeramhadSQREGTIISLTKEQAELT----VRACELRAKEEKLLAE-----------REAL 991
Cdd:pfam01576 311 TLdttaAQQELR---------------SKREQEVTELKKALEEETrsheAQLQEMRQKHTQALEElteqleqakrnKANL 375
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1395777135 992 ERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQE 1059
Cdd:pfam01576 376 EKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELE 443
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
622-893 |
2.23e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 2.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 622 VELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQAdleliEDAHRSRIKVL-ETSYQQREEQLRREKEvlsaqha 700
Cdd:PRK04863 837 AELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSA-----LNRLLPRLNLLaDETLADRVEEIREQLD------- 904
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 701 sycrEAEQARAeLVAQHQRQMAMAEqerdQEVARLRELQQAsILEMRKDHEHQLQRLKMLKDQ-----EIDAVTSATSHT 775
Cdd:PRK04863 905 ----EAEEAKR-FVQQHGNALAQLE----PIVSVLQSDPEQ-FEQLKQDYQQAQQTQRDAKQQafaltEVVQRRAHFSYE 974
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 776 RSLNGIIEqmekfSSSLN-TLSSRVEASHLTTSQQRElGIRQQDEQL--------------RALQERLGRQQRDME---- 836
Cdd:PRK04863 975 DAAEMLAK-----NSDLNeKLRQRLEQAEQERTRARE-QLRQAQAQLaqynqvlaslkssyDAKRQMLQELKQELQdlgv 1048
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 837 ------EERNRLQEviGKMEVRLSE-QSRL--LEQERWRVAAE----KTKAESAQRTLEEQRKIMVQQIA 893
Cdd:PRK04863 1049 padsgaEERARARR--DELHARLSAnRSRRnqLEKQLTFCEAEmdnlTKKLRKLERDYHEMREQVVNAKA 1116
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
667-906 |
2.46e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 2.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 667 EDAHRSRIKVLETSYQ-QREEQLRREKEV--LSAQHASYCREAEQARAELVAQHQRQMAMAEQERDQEVA--RLRELQQA 741
Cdd:pfam12128 599 EEELRERLDKAEEALQsAREKQAAAEEQLvqANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKknKALAERKD 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 742 SILEMRKDHEHQLQRLK-----MLKDQEIDAVTSATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASH------LTTSQQR 810
Cdd:pfam12128 679 SANERLNSLEAQLKQLDkkhqaWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAkaelkaLETWYKR 758
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 811 ELGIRQQDEQLRAlqerlgrqqrDMEEERNRLQEVIGKMEVRLSE--QSRLLEQERW-----RVAAEKTKAESAQRTLEE 883
Cdd:pfam12128 759 DLASLGVDPDVIA----------KLKREIRTLERKIERIAVRRQEvlRYFDWYQETWlqrrpRLATQLSNIERAISELQQ 828
|
250 260
....*....|....*....|...
gi 1395777135 884 QRKIMVQQIAMEREELERAKSAL 906
Cdd:pfam12128 829 QLARLIADTKLRRAKLEMERKAS 851
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
604-735 |
2.66e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 604 KQLLAAQGQLQSSTAQLQVELLQSQTKLSELEAQVRKLELERAQHRMLLESLQQRHQA-----DLELIE---DAHRSRIK 675
Cdd:COG1579 27 KELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNvrnnkEYEALQkeiESLKRRIS 106
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1395777135 676 VLETSYQQ---REEQLRREKEVLSAQHASYCREAEQARAEL---VAQHQRQMAMAEQERDQEVARL 735
Cdd:COG1579 107 DLEDEILElmeRIEELEEELAELEAELAELEAELEEKKAELdeeLAELEAELEELEAEREELAAKI 172
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
808-992 |
2.91e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 808 QQRELGIRQQDEQLRALQERLgrqqRDMEEERNRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKI 887
Cdd:COG1579 13 QELDSELDRLEHRLKELPAEL----AELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 888 -MVQQIAMEREELERAKSALLEEQKSVMNKCGEERRRLAAewaeyfTQQKLSKERAEreaeramhadsqregtiisLTKE 966
Cdd:COG1579 89 kEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAE------LEAELAELEAE-------------------LEEK 143
|
170 180
....*....|....*....|....*.
gi 1395777135 967 QAELTVRACELRAKEEKLLAEREALE 992
Cdd:COG1579 144 KAELDEELAELEAELEELEAEREELA 169
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
618-737 |
3.17e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.61 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 618 AQLQVELLQSQTKLSELEAQVRKLELERAQhrmLLESLQQRHQADLELIEDahrsRIKVLETSYQQREEQLRREKEVLSA 697
Cdd:COG0542 400 ARVRMEIDSKPEELDELERRLEQLEIEKEA---LKKEQDEASFERLAELRD----ELAELEEELEALKARWEAEKELIEE 472
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1395777135 698 QHAsyCREAEQARAELVAQHQRQMAMAEQERDQEVARLRE 737
Cdd:COG0542 473 IQE--LKEELEQRYGKIPELEKELAELEEELAELAPLLRE 510
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
850-1088 |
3.53e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 3.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 850 EVRLSEQSRLLEQERWRvaaekTKAESAQRTLEEQRKImvqqiamerEELERAKSALLEEQKSVMnkcgEERRRLAAEwa 929
Cdd:pfam17380 286 ERQQQEKFEKMEQERLR-----QEKEEKAREVERRRKL---------EEAEKARQAEMDRQAAIY----AEQERMAME-- 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 930 eyftqqklskerAEREAERAMHADSQREGTIIsltkEQAELTVRACELRAKEEKLLAEREALERERQELRLEKdrlhKAS 1009
Cdd:pfam17380 346 ------------RERELERIRQEERKRELERI----RQEEIAMEISRMRELERLQMERQQKNERVRQELEAAR----KVK 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 1010 LRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQE-QRVHQEHLSLAQQRLQLDRVRQE 1088
Cdd:pfam17380 406 ILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQvERLRQQEEERKRKKLELEKEKRD 485
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
959-1088 |
4.41e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 4.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 959 TIISLTKEQAELTVRACELRA---KEEKLLAEREALERER----QELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYE 1031
Cdd:PRK12704 31 AKIKEAEEEAKRILEEAKKEAeaiKKEALLEAKEEIHKLRnefeKELRERRNELQKLEKRLLQKEENLDRKLELLEKREE 110
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1395777135 1032 EGEQALQEAQQMQNEQQGRLQVVQRQQEWLRQQEQRVHQEHLSLAQQRLqLDRVRQE 1088
Cdd:PRK12704 111 ELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEIL-LEKVEEE 166
|
|
| PLN03086 |
PLN03086 |
PRLI-interacting factor K; Provisional |
976-1064 |
4.46e-03 |
|
PRLI-interacting factor K; Provisional
Pssm-ID: 178635 [Multi-domain] Cd Length: 567 Bit Score: 41.01 E-value: 4.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 976 ELRAKEEKLlaEREALER-ERQELRLEKDRLHKASLRLQARAQEVEHMskvaSKKYEEGEQALQEAQQMQ-NEQQGRLQV 1053
Cdd:PLN03086 4 ELRRAREKL--EREQRERkQRAKLKLERERKAKEEAAKQREAIEAAQR----SRRLDAIEAQIKADQQMQeSLQAGRGIV 77
|
90
....*....|.
gi 1395777135 1054 VQRQQEWLRQQ 1064
Cdd:PLN03086 78 FSRIFEAVSFQ 88
|
|
| MAP7 |
pfam05672 |
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is ... |
827-911 |
4.88e-03 |
|
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent.
Pssm-ID: 461709 [Multi-domain] Cd Length: 153 Bit Score: 38.87 E-value: 4.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 827 RLGRQQRDMEEERNRLQEviGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSAL 906
Cdd:pfam05672 21 RQAREQREREEQERLEKE--EEERLRKEELRRRAEEERARREEEARRLEEERRREEEERQRKAEEEAEEREQREQEEQER 98
|
....*
gi 1395777135 907 LEEQK 911
Cdd:pfam05672 99 LQKQK 103
|
|
| UPF0242 |
pfam06785 |
Uncharacterized protein family (UPF0242) N-terminus; This region includes an N-terminal ... |
976-1069 |
6.75e-03 |
|
Uncharacterized protein family (UPF0242) N-terminus; This region includes an N-terminal transmembrane region and a C-terminal coiled-coil.
Pssm-ID: 429117 [Multi-domain] Cd Length: 194 Bit Score: 39.03 E-value: 6.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 976 ELRAKEEKLLAEREALERERQELRLEKDRLhkaSLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGrlqVVQ 1055
Cdd:pfam06785 94 ELQSEEERLEEELSQKEEELRRLTEENQQL---QIQLQQISQDFAEFRLESEEQLAEKQLLINEYQQTIEEQRS---VLE 167
|
90
....*....|....
gi 1395777135 1056 RQQEWLRQQEQRVH 1069
Cdd:pfam06785 168 KRQDQIENLESKVR 181
|
|
| PRK10927 |
PRK10927 |
cell division protein FtsN; |
1041-1129 |
9.62e-03 |
|
cell division protein FtsN;
Pssm-ID: 236797 [Multi-domain] Cd Length: 319 Bit Score: 39.66 E-value: 9.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1395777135 1041 QQMQNEQQGRLQVVQRQQEWlrQQEQRVHQEHLSLAQQRLQLDRVRQEVPASLPGLPPRVQGPAASSRDAVQAPASSSPQ 1120
Cdd:PRK10927 143 EQTPEQRQQTLQRQRQAQQL--AEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAHTTAQ 220
|
....*....
gi 1395777135 1121 CSQPAAAQV 1129
Cdd:PRK10927 221 SKPQQAAPV 229
|
|
| |
