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Conserved domains on  [gi|1624698539|ref|NP_001356948|]
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xmas, isoform C [Drosophila melanogaster]

Protein Classification

SAC3/GANP family protein( domain architecture ID 10880548)

SAC3/GANP family protein is a component of a multi-protein complex, such as Arabidopsis thaliana SAC3 family protein C that is a possible component of the TREX-2 complex (transcription and export complex 2)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SAC3_GANP pfam03399
SAC3/GANP family; This family includes diverse proteins involved in large complexes. The ...
 205-503 8.46e-119

SAC3/GANP family; This family includes diverse proteins involved in large complexes. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3, and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localization of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle.


:

Pssm-ID: 460911  Cd Length: 287  Bit Score: 377.25  E-value: 8.46e-119
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624698539  205 MCPEKERVLREFQRQVAYYELQPGSDELICHERALKQYSRSSADQETPLPHELRNETALHMTMSYLMHEIMDISERqdpq 284
Cdd:pfam03399    1 MCPEFERVRREVQNDLHRFEKEDPDTGKADPSKAVKEYSRSAAGQEEPLPSDLRPPPVLLKTLDYLLDEILDREDE---- 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624698539  285 sHMGDWFHFVWDRTRSIRKEITQQELCSLGAVKLVEQCARFHIHCAARLVDADPSvFDSKINAENLTKCLQTLKYMYHDL 364
Cdd:pfam03399   77 -PLPEVHDFIWDRTRSIRQDFTIQNLSGPEAVDCLERIVRFHILSLHRLCEEPVE-FDPQQNLEQLQKCLQSLLEIYDDL 154

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624698539  365 RIKGVPCPKEAEFRGYIVLLNLADANFLWDIGQLPAELQSCPEVRQAIQFYLALQDTNFVRFFQLLadKDTSYLSACILV 444
Cdd:pfam03399  155 RGKGIPCPNEAEFRAYYLLLNLGDPDILREVQQLPSEIRKSPEVQFALKLRRALQNNNYVRFFRLV--RQVSYLMACLLE 232

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1624698539  445 NYFTRLRVLGLHRLIQAYRSPRKDevssLPLSYIAELLSFASEQEAADFVQHYGLQINE 503
Cdd:pfam03399  233 RHFNEVRRYALKALNRAYSSKNKP----FPLSDLARLLGFDDEEEAIEFCEAYGLEVSD 287
RRM_XMAS2 cd12457
RNA recognition motif (RRM) found in X-linked male sterile 2 (Xmas-2) and similar proteins; ...
 12-82 1.03e-32

RNA recognition motif (RRM) found in X-linked male sterile 2 (Xmas-2) and similar proteins; This subfamily corresponds to the RRM in Xmas-2, the Drosophila homolog of yeast Sac3p protein, together with E(y)2, the Drosophila homologue of yeast Sus1p protein, forming an endogenous complex that is required in the regulation of mRNA transport and also involved in the efficient transcription regulation of the heat-shock protein 70 (hsp70) loci. All family members are found in insects and contain an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), followed by a PCI domain.


:

Pssm-ID: 409890 [Multi-domain]  Cd Length: 71  Bit Score: 122.07  E-value: 1.03e-32
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1624698539   12 KTLLCRNIPELFLDKYVARSHFGRFGTLVNFVLRPRRMTCTVSYASEDEAARALLDGASFQGHLFDISYAD 82
Cdd:cd12457      1 KSITCTDVPEELLDKTAAKEYFRKFGKIKKITLRPKRRTCTVEYTNKEEAERALLNGGEYNGHMFDVEWTK 71
 
Name Accession Description Interval E-value
SAC3_GANP pfam03399
SAC3/GANP family; This family includes diverse proteins involved in large complexes. The ...
 205-503 8.46e-119

SAC3/GANP family; This family includes diverse proteins involved in large complexes. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3, and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localization of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle.


Pssm-ID: 460911  Cd Length: 287  Bit Score: 377.25  E-value: 8.46e-119
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624698539  205 MCPEKERVLREFQRQVAYYELQPGSDELICHERALKQYSRSSADQETPLPHELRNETALHMTMSYLMHEIMDISERqdpq 284
Cdd:pfam03399    1 MCPEFERVRREVQNDLHRFEKEDPDTGKADPSKAVKEYSRSAAGQEEPLPSDLRPPPVLLKTLDYLLDEILDREDE---- 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624698539  285 sHMGDWFHFVWDRTRSIRKEITQQELCSLGAVKLVEQCARFHIHCAARLVDADPSvFDSKINAENLTKCLQTLKYMYHDL 364
Cdd:pfam03399   77 -PLPEVHDFIWDRTRSIRQDFTIQNLSGPEAVDCLERIVRFHILSLHRLCEEPVE-FDPQQNLEQLQKCLQSLLEIYDDL 154

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624698539  365 RIKGVPCPKEAEFRGYIVLLNLADANFLWDIGQLPAELQSCPEVRQAIQFYLALQDTNFVRFFQLLadKDTSYLSACILV 444
Cdd:pfam03399  155 RGKGIPCPNEAEFRAYYLLLNLGDPDILREVQQLPSEIRKSPEVQFALKLRRALQNNNYVRFFRLV--RQVSYLMACLLE 232

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1624698539  445 NYFTRLRVLGLHRLIQAYRSPRKDevssLPLSYIAELLSFASEQEAADFVQHYGLQINE 503
Cdd:pfam03399  233 RHFNEVRRYALKALNRAYSSKNKP----FPLSDLARLLGFDDEEEAIEFCEAYGLEVSD 287
SAC3 COG5079
Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and ...
 146-501 3.30e-38

Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning];


Pssm-ID: 227411 [Multi-domain]  Cd Length: 646  Bit Score: 153.93  E-value: 3.30e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624698539  146 APVSRDRTPAQLRDLENMMRRPAHTSEEKFSVLDARDK---LLRLNRTQHKLSGAT-QGHCADMCPEKERVLREFQRQVA 221
Cdd:COG5079     17 APVSKDRFDLGMRVFMVLLFSSTLDTNPFELLKKLRAKereLLEAKSANALPSAIVfVGTCMDMCPEFEREERVLQNDVS 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624698539  222 YYELQPgSDELICHERALKQYSRSSADQETPLPHELRNETALHMTMSYLmheIMDISERQDPQSHMgdwfhFVWDRTRSI 301
Cdd:COG5079     97 PYEANP-NVKKASRTLAVKAYHRPAAGKHPELPSDVRPPEVLVKTIDYL---VKLCAGDQLIEMHR-----FVRDRTRAV 167

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624698539  302 RKEITQQELCSLGAVKLVEQCARFHIHCAARLVDADPsvFDSKINAENLTKCLQTLKYMYHDLRIKGVPCPKEAEFRGYI 381
Cdd:COG5079    168 RQDFTIQNEKGKDAVECHERIARFHILFLHLLHDHPH--FSKQQELEQLKKSLASLIELYDDGRAGKKECPNEAEFRAYA 245

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624698539  382 VLLNLADANFLWDIGQLPAELQSCPEVRQAIQFYLALQDTNF---------------VRFFQLLADKDTSYLSACILVNY 446
Cdd:COG5079    246 ILASLGDPRYVAGIQGWPGGIFCDLPVQIALKLMQLAQSNNFrllgrrnteacfnlyTRFFKLIQSPSVQYLMGCLLEKH 325

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1624698539  447 FTRLRVLGLHRLIQAYRSPRKDevssLPLSYIAELLSFASEQEAADFVQHYGLQI 501
Cdd:COG5079    326 NISIRGGALKAMEKEIESAHKN----IPFVDLSGILDFEEKGEGEEFCKYYGLEI 376
RRM_XMAS2 cd12457
RNA recognition motif (RRM) found in X-linked male sterile 2 (Xmas-2) and similar proteins; ...
 12-82 1.03e-32

RNA recognition motif (RRM) found in X-linked male sterile 2 (Xmas-2) and similar proteins; This subfamily corresponds to the RRM in Xmas-2, the Drosophila homolog of yeast Sac3p protein, together with E(y)2, the Drosophila homologue of yeast Sus1p protein, forming an endogenous complex that is required in the regulation of mRNA transport and also involved in the efficient transcription regulation of the heat-shock protein 70 (hsp70) loci. All family members are found in insects and contain an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), followed by a PCI domain.


Pssm-ID: 409890 [Multi-domain]  Cd Length: 71  Bit Score: 122.07  E-value: 1.03e-32
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1624698539   12 KTLLCRNIPELFLDKYVARSHFGRFGTLVNFVLRPRRMTCTVSYASEDEAARALLDGASFQGHLFDISYAD 82
Cdd:cd12457      1 KSITCTDVPEELLDKTAAKEYFRKFGKIKKITLRPKRRTCTVEYTNKEEAERALLNGGEYNGHMFDVEWTK 71
RRM smart00360
RNA recognition motif;
13-74 5.94e-04

RNA recognition motif;


Pssm-ID: 214636 [Multi-domain]  Cd Length: 73  Bit Score: 40.27  E-value: 5.94e-04
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624698539    13 TLLCRNIPELFLDKYVaRSHFGRFGTLVNFVLRPRRMT------CTVSYASEDEAARAL--LDGASFQGH 74
Cdd:smart00360    1 TLFVGNLPPDTTEEEL-RELFSKFGKVESVRLVRDKETgkskgfAFVEFESEEDAEKALeaLNGKELDGR 69
 
Name Accession Description Interval E-value
SAC3_GANP pfam03399
SAC3/GANP family; This family includes diverse proteins involved in large complexes. The ...
 205-503 8.46e-119

SAC3/GANP family; This family includes diverse proteins involved in large complexes. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3, and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localization of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle.


Pssm-ID: 460911  Cd Length: 287  Bit Score: 377.25  E-value: 8.46e-119
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624698539  205 MCPEKERVLREFQRQVAYYELQPGSDELICHERALKQYSRSSADQETPLPHELRNETALHMTMSYLMHEIMDISERqdpq 284
Cdd:pfam03399    1 MCPEFERVRREVQNDLHRFEKEDPDTGKADPSKAVKEYSRSAAGQEEPLPSDLRPPPVLLKTLDYLLDEILDREDE---- 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624698539  285 sHMGDWFHFVWDRTRSIRKEITQQELCSLGAVKLVEQCARFHIHCAARLVDADPSvFDSKINAENLTKCLQTLKYMYHDL 364
Cdd:pfam03399   77 -PLPEVHDFIWDRTRSIRQDFTIQNLSGPEAVDCLERIVRFHILSLHRLCEEPVE-FDPQQNLEQLQKCLQSLLEIYDDL 154

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624698539  365 RIKGVPCPKEAEFRGYIVLLNLADANFLWDIGQLPAELQSCPEVRQAIQFYLALQDTNFVRFFQLLadKDTSYLSACILV 444
Cdd:pfam03399  155 RGKGIPCPNEAEFRAYYLLLNLGDPDILREVQQLPSEIRKSPEVQFALKLRRALQNNNYVRFFRLV--RQVSYLMACLLE 232

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1624698539  445 NYFTRLRVLGLHRLIQAYRSPRKDevssLPLSYIAELLSFASEQEAADFVQHYGLQINE 503
Cdd:pfam03399  233 RHFNEVRRYALKALNRAYSSKNKP----FPLSDLARLLGFDDEEEAIEFCEAYGLEVSD 287
SAC3 COG5079
Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and ...
 146-501 3.30e-38

Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning];


Pssm-ID: 227411 [Multi-domain]  Cd Length: 646  Bit Score: 153.93  E-value: 3.30e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624698539  146 APVSRDRTPAQLRDLENMMRRPAHTSEEKFSVLDARDK---LLRLNRTQHKLSGAT-QGHCADMCPEKERVLREFQRQVA 221
Cdd:COG5079     17 APVSKDRFDLGMRVFMVLLFSSTLDTNPFELLKKLRAKereLLEAKSANALPSAIVfVGTCMDMCPEFEREERVLQNDVS 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624698539  222 YYELQPgSDELICHERALKQYSRSSADQETPLPHELRNETALHMTMSYLmheIMDISERQDPQSHMgdwfhFVWDRTRSI 301
Cdd:COG5079     97 PYEANP-NVKKASRTLAVKAYHRPAAGKHPELPSDVRPPEVLVKTIDYL---VKLCAGDQLIEMHR-----FVRDRTRAV 167

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624698539  302 RKEITQQELCSLGAVKLVEQCARFHIHCAARLVDADPsvFDSKINAENLTKCLQTLKYMYHDLRIKGVPCPKEAEFRGYI 381
Cdd:COG5079    168 RQDFTIQNEKGKDAVECHERIARFHILFLHLLHDHPH--FSKQQELEQLKKSLASLIELYDDGRAGKKECPNEAEFRAYA 245

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624698539  382 VLLNLADANFLWDIGQLPAELQSCPEVRQAIQFYLALQDTNF---------------VRFFQLLADKDTSYLSACILVNY 446
Cdd:COG5079    246 ILASLGDPRYVAGIQGWPGGIFCDLPVQIALKLMQLAQSNNFrllgrrnteacfnlyTRFFKLIQSPSVQYLMGCLLEKH 325

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1624698539  447 FTRLRVLGLHRLIQAYRSPRKDevssLPLSYIAELLSFASEQEAADFVQHYGLQI 501
Cdd:COG5079    326 NISIRGGALKAMEKEIESAHKN----IPFVDLSGILDFEEKGEGEEFCKYYGLEI 376
RRM_XMAS2 cd12457
RNA recognition motif (RRM) found in X-linked male sterile 2 (Xmas-2) and similar proteins; ...
 12-82 1.03e-32

RNA recognition motif (RRM) found in X-linked male sterile 2 (Xmas-2) and similar proteins; This subfamily corresponds to the RRM in Xmas-2, the Drosophila homolog of yeast Sac3p protein, together with E(y)2, the Drosophila homologue of yeast Sus1p protein, forming an endogenous complex that is required in the regulation of mRNA transport and also involved in the efficient transcription regulation of the heat-shock protein 70 (hsp70) loci. All family members are found in insects and contain an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), followed by a PCI domain.


Pssm-ID: 409890 [Multi-domain]  Cd Length: 71  Bit Score: 122.07  E-value: 1.03e-32
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1624698539   12 KTLLCRNIPELFLDKYVARSHFGRFGTLVNFVLRPRRMTCTVSYASEDEAARALLDGASFQGHLFDISYAD 82
Cdd:cd12457      1 KSITCTDVPEELLDKTAAKEYFRKFGKIKKITLRPKRRTCTVEYTNKEEAERALLNGGEYNGHMFDVEWTK 71
CSN8_PSD8_EIF3K pfam10075
CSN8/PSMD8/EIF3K family; This domain is conserved from plants to humans. It is a signature ...
 379-508 7.02e-07

CSN8/PSMD8/EIF3K family; This domain is conserved from plants to humans. It is a signature protein motif found in components of CSN (COP9 signalosome) where it functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development. It is found in Eukaryotic translation initiation factor 3 subunit K, a component of the eukaryotic translation initiation factor 3 (eIF-3) complex required for the initiation of protein synthesis. It is also found in 26S proteasome non-ATPase regulatory subunit 8 (PSMD8), a regulatory subunit of the 26S proteasome.


Pssm-ID: 462954  Cd Length: 137  Bit Score: 50.33  E-value: 7.02e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624698539  379 GYIVLLNLADANFLWDigQLPAEL-QSCPEVRQAIQFYLALQDTNFVRFFQLL----ADKDTSYLSAcILVNYFtRLRVL 453
Cdd:pfam10075   13 KLLTQNDLADFRLLLK--RIPPDIkQSNPEIQQLLTLEQLLWQGDYAKFYQTLksndWSEDYTPFVS-GLEDTI-RDEIA 88

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1624698539  454 GLhrLIQAYRSPRKDEvsslplsyIAELLSFASEQEAADFVQHYGLQINEAGRVV 508
Cdd:pfam10075   89 AL--VGKAYESISADD--------LAELLGLDTPEELKKFAKARGWTLDADGVIL 133
RRM_MCM3A_like cd12443
RNA recognition motif (RRM) found in 80 kDa MCM3-associated protein (Map80) and similar ...
 12-72 8.47e-07

RNA recognition motif (RRM) found in 80 kDa MCM3-associated protein (Map80) and similar proteins; This subfamily corresponds to the RRM of Map80, also termed germinal center-associated nuclear protein (GANP), involved in the nuclear localization pathway of MCM3, a protein necessary for the initiation of DNA replication and also involves in controls that ensure DNA replication is initiated once per cell cycle. Map80 contains one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain).


Pssm-ID: 409877 [Multi-domain]  Cd Length: 75  Bit Score: 48.47  E-value: 8.47e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1624698539   12 KTLLCRNIPELFLDKYVARSHFGRFGTLVNFVLRPRRMTCTVSYASEDEAARALLDGASFQ 72
Cdd:cd12443      1 TAIVCKNIPEELNDKEILRRHFSKFGKVARVFCNPRKNLAIVHFKDHESAALAKKKGKLLS 61
RRM1_RBM26_like cd12257
RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26) and similar ...
 12-65 3.57e-06

RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26) and similar proteins; This subfamily corresponds to the RRM1 of RBM26, and the RRM of RBM27. RBM26, also known as cutaneous T-cell lymphoma (CTCL) tumor antigen se70-2, represents a cutaneous lymphoma (CL)-associated antigen. It contains two RNA recognition motifs (RRMs), also known as RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The RRMs may play some functional roles in RNA-binding or protein-protein interactions. RBM27 contains only one RRM; its biological function remains unclear.


Pssm-ID: 409702 [Multi-domain]  Cd Length: 72  Bit Score: 46.40  E-value: 3.57e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1624698539   12 KTLLCRNIP-ELFLDKYVaRSHFGRFGTLVNFVLRPRRMTCTVSYASEDEAARAL 65
Cdd:cd12257      2 TTLEVRNIPpELNNITKL-REHFSKFGTIVNIQVNYNPESALVQFSTSEEANKAY 55
RRM_SF cd00590
RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP ...
 14-79 2.10e-04

RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).


Pssm-ID: 409669 [Multi-domain]  Cd Length: 72  Bit Score: 41.50  E-value: 2.10e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1624698539   14 LLCRNIPELFLDKYVaRSHFGRFGTLVNFVLRP-----RRMTCTVSYASEDEAARAL--LDGASFQGHLFDIS 79
Cdd:cd00590      1 LFVGNLPPDTTEEDL-RELFSKFGEVVSVRIVRdrdgkSKGFAFVEFESPEDAEKALeaLNGTELGGRPLKVS 72
RRM smart00360
RNA recognition motif;
13-74 5.94e-04

RNA recognition motif;


Pssm-ID: 214636 [Multi-domain]  Cd Length: 73  Bit Score: 40.27  E-value: 5.94e-04
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1624698539    13 TLLCRNIPELFLDKYVaRSHFGRFGTLVNFVLRPRRMT------CTVSYASEDEAARAL--LDGASFQGH 74
Cdd:smart00360    1 TLFVGNLPPDTTEEEL-RELFSKFGKVESVRLVRDKETgkskgfAFVEFESEEDAEKALeaLNGKELDGR 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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