|
Name |
Accession |
Description |
Interval |
E-value |
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
174-450 |
3.18e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 70.05 E-value: 3.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 174 DISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKEQVNDLDKQKVALE 253
Cdd:TIGR04523 374 KLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKE 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 254 ESRAQAEQALSEKESQIETLVTSLLKMK-DWAAVLGEADDGNLDLDMKSglENTAALDNQPKgALKKLIyaAKLNASLKA 332
Cdd:TIGR04523 454 LIIKNLDNTRESLETQLKVLSRSINKIKqNLEQKQKELKSKEKELKKLN--EEKKELEEKVK-DLTKKI--SSLKEKIEK 528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 333 LEGERNQVYTQLS----EVDQVKEDLT------------EHIKSLESKQASLQSEKTEFEsesQKLQQKLKVITELYQEN 396
Cdd:TIGR04523 529 LESEKKEKESKISdledELNKDDFELKkenlekeideknKEIEELKQTQKSLKKKQEEKQ---ELIDQKEKEKKDLIKEI 605
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1761178521 397 EMKLHRKLTVEENYRLEKEE--KLSKVDEKISHATEELEtcrQRAKDLEEELERTI 450
Cdd:TIGR04523 606 EEKEKKISSLEKELEKAKKEneKLSSIIKNIKSKKNKLK---QEVKQIKETIKEIR 658
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
80-445 |
1.58e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.17 E-value: 1.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 80 ELSALIEEKCKLLDKVSIVQK---EYEGLESSLKEASF-----EKESTEAQsLEFVEGsQISEATyENLEQSKSKLEDei 151
Cdd:TIGR02169 188 RLDLIIDEKRQQLERLRREREkaeRYQALLKEKREYEGyellkEKEALERQ-KEAIER-QLASLE-EELEKLTEEISE-- 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 152 llleekleeeRAKHSEQDE-LMADISKRIQSL-EDESKSLKSQVAEakttfriFEINEERLKGAIKDALNENSQLQESQK 229
Cdd:TIGR02169 263 ----------LEKRLEEIEqLLEELNKKIKDLgEEEQLRVKEKIGE-------LEAEIASLERSIAEKERELEDAEERLA 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 230 QLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVtsllkmkdwaAVLGEADdgnldldmksglENTAAL 309
Cdd:TIGR02169 326 KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR----------AELEEVD------------KEFAET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 310 DNQPKGALKKLiyaAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVI 389
Cdd:TIGR02169 384 RDELKDYREKL---EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL 460
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1761178521 390 TELYQENEMKLHRkltveenyrleKEEKLSKVDEKISHATEELETCRQRAKDLEEE 445
Cdd:TIGR02169 461 AADLSKYEQELYD-----------LKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
85-391 |
2.45e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 67.35 E-value: 2.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 85 IEEKCKLLDKVsivQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKledeillleekleeeraK 164
Cdd:TIGR04523 365 LEEKQNEIEKL---KKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKEL-----------------L 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 165 HSEQDELMADISKR---IQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKdalNENSQLQESQKQLLQETEMMK-- 239
Cdd:TIGR04523 425 EKEIERLKETIIKNnseIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSIN---KIKQNLEQKQKELKSKEKELKkl 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 240 --------EQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKD---WAAVLGEADDGNLDLDmKSGLENTAA 308
Cdd:TIGR04523 502 neekkeleEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFelkKENLEKEIDEKNKEIE-ELKQTQKSL 580
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 309 LDNQPKgaLKKLIyaaklnaslKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKV 388
Cdd:TIGR04523 581 KKKQEE--KQELI---------DQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQ 649
|
...
gi 1761178521 389 ITE 391
Cdd:TIGR04523 650 IKE 652
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
70-504 |
2.98e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 66.97 E-value: 2.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 70 YVGREKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEgsQISEATYEnLEQSKSKLED 149
Cdd:TIGR04523 209 KIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKK--QLSEKQKE-LEQNNKKIKE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 150 EILLLEEKLEEERA-KHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTfrIFEINEE--RLKGAIKDALNENS---- 222
Cdd:TIGR04523 286 LEKQLNQLKSEISDlNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKI--ISQLNEQisQLKKELTNSESENSekqr 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 223 QLQESQKQL----------LQETEMMKEQVNDL-------DKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAA 285
Cdd:TIGR04523 364 ELEEKQNEIeklkkenqsyKQEIKNLESQINDLeskiqnqEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIK 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 286 VLgEADDGNLDLDMKSgLENTAALDNQPKGALKKLIYAAKLNasLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQ 365
Cdd:TIGR04523 444 DL-TNQDSVKELIIKN-LDNTRESLETQLKVLSRSINKIKQN--LEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKI 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 366 ASLQSEKTEFESESQKLQQKLKVItelyqENEMKlhrKLTVEENYRLEKEEKLSKvDEKIS---HATEELETCRQRAKDL 442
Cdd:TIGR04523 520 SSLKEKIEKLESEKKEKESKISDL-----EDELN---KDDFELKKENLEKEIDEK-NKEIEelkQTQKSLKKKQEEKQEL 590
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1761178521 443 EEELERTIHSYQGQVISHEKKAhdnwlaaRTLERNLNDLRKENAHNRQKLTETEFKFELLEK 504
Cdd:TIGR04523 591 IDQKEKEKKDLIKEIEEKEKKI-------SSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQ 645
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
66-483 |
9.40e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 65.76 E-value: 9.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 66 RSRFYVGREKKLAlelsALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKS 145
Cdd:pfam02463 164 GSRLKRKKKEALK----KLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERI 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 146 KLEDEILLLEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEER-LKGAIKDALNENSQL 224
Cdd:pfam02463 240 DLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLkLERRKVDDEEKLKES 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 225 QESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLvtsLLKMKDWAAVLGEADDGNLDLDmkSGLE 304
Cdd:pfam02463 320 EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKL---EQLEEELLAKKKLESERLSSAA--KLKE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 305 NTAALDNQPKGALKKLIYAAKLNASLkaLEGERNQVYTQLSEVDQVKEDLTEHI---KSLESKQASLQSEKTEFESESQK 381
Cdd:pfam02463 395 EELELKSEEEKEAQLLLELARQLEDL--LKEEKKEELEILEEEEESIELKQGKLteeKEELEKQELKLLKDELELKKSED 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 382 LQQKLKVITELYQENEMKLHRKLTVEENYRLEKEEKLSKVD-EKISHATEELETCRQRAKDLEEELERTIHSYQGQVISH 460
Cdd:pfam02463 473 LLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLaLIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVE 552
|
410 420
....*....|....*....|...
gi 1761178521 461 EKKAHDNWLAARTLERNLNDLRK 483
Cdd:pfam02463 553 VSATADEVEERQKLVRALTELPL 575
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
63-435 |
2.57e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 2.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 63 RSIRSRFYVGREKKLALELSAL-IEEKcklldkvsivQKEYEGLESSLKEASFEKESTEAQSLEfvEGSQISEatyenle 141
Cdd:TIGR02168 211 KAERYKELKAELRELELALLVLrLEEL----------REELEELQEELKEAEEELEELTAELQE--LEEKLEE------- 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 142 qskskledeillleekleeERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNEN 221
Cdd:TIGR02168 272 -------------------LRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 222 SQLQESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVLgEADDGNLDLDMKS 301
Cdd:TIGR02168 333 DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL-NNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 302 GLENTAALDNQPKGALKKLiyaakLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQK 381
Cdd:TIGR02168 412 LEDRRERLQQEIEELLKKL-----EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQ 486
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1761178521 382 LQQKLKVITELyQENEMKLHRKLTVEENYRLEKEEKLSKVDEKIShATEELETC 435
Cdd:TIGR02168 487 LQARLDSLERL-QENLEGFSEGVKALLKNQSGLSGILGVLSELIS-VDEGYEAA 538
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
208-450 |
3.64e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 62.47 E-value: 3.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 208 ERLKGAIKDALNENSQLQESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVL 287
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 288 geaddgnLDLDMKSGLENTAAL---DNQPKGALKKLIYAAKLNASLKAlegernqvytQLSEVDQVKEDLTEHIKSLESK 364
Cdd:COG4942 110 -------LRALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPARRE----------QAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 365 QASLQSEKTEFESESQKLQQKLKvitelyqenemklhrkltveenyrlEKEEKLSKVDEKISHATEELETCRQRAKDLEE 444
Cdd:COG4942 173 RAELEALLAELEEERAALEALKA-------------------------ERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
....*.
gi 1761178521 445 ELERTI 450
Cdd:COG4942 228 LIARLE 233
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
71-448 |
3.96e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 3.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 71 VGREKKLAlELSALIEEkckLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDE 150
Cdd:TIGR02168 673 LERRREIE-ELEEKIEE---LEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 151 ILLLEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFrifEINEERLkgaikDALN-ENSQLQESQK 229
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL---KALREAL-----DELRaELTLLNEEAA 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 230 QLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLlkmkdwaavlgeaddgnldldmksglentaal 309
Cdd:TIGR02168 821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI-------------------------------- 868
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 310 dnqpkgalkkliyaAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKqaslqseKTEFESESQKLQQKLKVI 389
Cdd:TIGR02168 869 --------------EELESELEALLNERASLEEALALLRSELEELSEELRELESK-------RSELRRELEELREKLAQL 927
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 390 TELYQENEMKLHRKL-TVEENYRLEKEEklskVDEKISHATEELETCRQRAKDLEEELER 448
Cdd:TIGR02168 928 ELRLEGLEVRIDNLQeRLSEEYSLTLEE----AEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
162-492 |
6.55e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 6.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 162 RAKHSEQDELMADIS-KRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKE 240
Cdd:TIGR02168 216 KELKAELRELELALLvLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 241 QVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKdwaavlgeaddgnldldmksglENTAALDNQPKGALKKL 320
Cdd:TIGR02168 296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA----------------------EELAELEEKLEELKEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 321 iyaAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKL 400
Cdd:TIGR02168 354 ---ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 401 hrkltvEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLE---EELERTIHSYQGQVISHEKKAHdnwlAARTLERN 477
Cdd:TIGR02168 431 ------EEAELKELQAELEELEEELEELQEELERLEEALEELReelEEAEQALDAAERELAQLQARLD----SLERLQEN 500
|
330
....*....|....*...
gi 1761178521 478 LNDLR---KENAHNRQKL 492
Cdd:TIGR02168 501 LEGFSegvKALLKNQSGL 518
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
138-490 |
4.04e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.03 E-value: 4.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 138 ENLEQSKSKLEDEILLLEEKLEEERAKHSEQDELMADISKRIQsledESKSLKSQVAEAKTTFRIFEINEERLKGAIKDa 217
Cdd:TIGR04523 169 EELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQ----KNKSLESQISELKKQNNQLKDNIEKKQQEINE- 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 218 lnENSQLQESQKQLLQETEMMKEQVNDLDKQKVALEesraQAEQALSEKESQIETLVTSLLKMKDWAavlgeadDGNLDL 297
Cdd:TIGR04523 244 --KTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELE----QNNKKIKELEKQLNQLKSEISDLNNQK-------EQDWNK 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 298 DMKSGLENT----AALDNQPKGALKKLiyaAKLNASLKALEGERNQVYTQLSEVD-QVKEDLTEhIKSLESKQASLQSEK 372
Cdd:TIGR04523 311 ELKSELKNQekklEEIQNQISQNNKII---SQLNEQISQLKKELTNSESENSEKQrELEEKQNE-IEKLKKENQSYKQEI 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 373 TEFESESQKLQQKLKVITELYQENEMKLHrklTVEENYR-LEKEEKLSKVD-----EKISHATEE---LETCRQRAKDLE 443
Cdd:TIGR04523 387 KNLESQINDLESKIQNQEKLNQQKDEQIK---KLQQEKElLEKEIERLKETiiknnSEIKDLTNQdsvKELIIKNLDNTR 463
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1761178521 444 EELERTIHSYQGQVISHEKKAHDNwlaARTLERNLNDLRKENAHNRQ 490
Cdd:TIGR04523 464 ESLETQLKVLSRSINKIKQNLEQK---QKELKSKEKELKKLNEEKKE 507
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
208-397 |
4.28e-09 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 59.46 E-value: 4.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 208 ERLKGAIKDALNENSQLQESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTsllKMKDWAAVL 287
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERRE---ELGERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 288 GEADDGNLDLDMKSGLENTA-ALDNQpkGALKKLiyAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQA 366
Cdd:COG3883 96 YRSGGSVSYLDVLLGSESFSdFLDRL--SALSKI--ADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190
....*....|....*....|....*....|.
gi 1761178521 367 SLQSEKTEFESESQKLQQKLKVITELYQENE 397
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELE 202
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
89-484 |
2.49e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 57.81 E-value: 2.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 89 CKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEILLLEEKLEEERAKHSEQ 168
Cdd:pfam05483 359 CSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKE 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 169 DELMAdiskRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKEQVND---- 244
Cdd:pfam05483 439 QELIF----LLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDmtle 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 245 LDKQKVALEESRAQAEQALSekesQIETLVTSLLKMKDwaavlgEADDGNLDLDMKsGLENTAALDNQPKGALKKLIYAA 324
Cdd:pfam05483 515 LKKHQEDIINCKKQEERMLK----QIENLEEKEMNLRD------ELESVREEFIQK-GDEVKCKLDKSEENARSIEYEVL 583
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 325 KLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSL------ESKQAS---LQSEKTEFESESQKlqQKLKVITELYQE 395
Cdd:pfam05483 584 KKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALkkkgsaENKQLNayeIKVNKLELELASAK--QKFEEIIDNYQK 661
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 396 nemKLHRKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSY-------QGQVISHEKKAHDNW 468
Cdd:pfam05483 662 ---EIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYdkiieerDSELGLYKNKEQEQS 738
|
410
....*....|....*.
gi 1761178521 469 LAARTLERNLNDLRKE 484
Cdd:pfam05483 739 SAKAALEIELSNIKAE 754
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
73-349 |
3.43e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 3.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 73 REKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEAsfEKESTEAQSLEFVEGSQISEatyenLEQSKSKLEDEIL 152
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEEL--ELELEEAQAEEYELLAELAR-----LEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 153 LLEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLL 232
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 233 QETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLvtsLLKMKDWAAVLGEADDGNLDLDmksgLENTAALDNQ 312
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL---EEEEEEEEEALEEAAEEEAELE----EEEEALLELL 465
|
250 260 270
....*....|....*....|....*....|....*..
gi 1761178521 313 PKGALKKLIYAAKLNASLKALEGERNQVYTQLSEVDQ 349
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
78-386 |
2.88e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 2.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 78 ALELSALIEEKcklldKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSkskledeillleek 157
Cdd:COG1196 215 YRELKEELKEL-----EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE-------------- 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 158 LEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAkttfrifEINEERLKGAIKDALNENSQLQESQKQLLQETEM 237
Cdd:COG1196 276 LEELELELEEAQAEEYELLAELARLEQDIARLEERRREL-------EERLEELEEELAELEEELEELEEELEELEEELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 238 MKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDwAAVLGEADDGNLDLDMKSGLENTAALDNQpkgal 317
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR-AAAELAAQLEELEEAEEALLERLERLEEE----- 422
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1761178521 318 kkliyAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKL 386
Cdd:COG1196 423 -----LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
75-504 |
3.00e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.30 E-value: 3.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 75 KKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEILLL 154
Cdd:PRK03918 168 GEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKEL 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 155 EEKLEEER---AKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGA--IKDALNENSQLQESQK 229
Cdd:PRK03918 248 ESLEGSKRkleEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELreIEKRLSRLEEEINGIE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 230 QLLQETEMMKEQVNDLDKQKVALE------ESRAQAEQALSEKESQIETLVTSL--LKMKDWAAVLGEADdgnldldmKS 301
Cdd:PRK03918 328 ERIKELEEKEERLEELKKKLKELEkrleelEERHELYEEAKAKKEELERLKKRLtgLTPEKLEKELEELE--------KA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 302 GLENTAALDN--QPKGALKKLIyaAKLNASLKALEGERNQVYTQLSEVDQvkEDLTEHIKSLESKQASLQSEKTEFESES 379
Cdd:PRK03918 400 KEEIEEEISKitARIGELKKEI--KELKKAIEELKKAKGKCPVCGRELTE--EHRKELLEEYTAELKRIEKELKEIEEKE 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 380 QKLQQKLKVItELYQENEMKLHRKLTVEENYRlEKEEKLSKVD-EKISHATEELETCRQRAKDLEEELERtihsyqgqVI 458
Cdd:PRK03918 476 RKLRKELREL-EKVLKKESELIKLKELAEQLK-ELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIKS--------LK 545
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 1761178521 459 SHEKKAHDNWLAARTLERNLNDLRKENAHNRQKLTETEFK-FELLEK 504
Cdd:PRK03918 546 KELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFEsVEELEE 592
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
77-505 |
6.06e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 53.23 E-value: 6.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 77 LALELSALIEEKCKLL----DKVSIVQKEYEGLESSLKEAsfekESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEIL 152
Cdd:COG4717 44 RAMLLERLEKEADELFkpqgRKPELNLKELKELEEELKEA----EEKEEEYAELQEELEELEEELEELEAELEELREELE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 153 LLEEKLeeeraKHSEQDELMADISKRIQSLEDESKSLKSQVAEakttfrifeinEERLKGAIKDALNENSQLQESQKQLL 232
Cdd:COG4717 120 KLEKLL-----QLLPLYQELEALEAELAELPERLEELEERLEE-----------LRELEEELEELEAELAELQEELEELL 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 233 QET-EMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETL---VTSLLKMKDWAAVLGEADDGNLDLDMKSGLENTAA 308
Cdd:COG4717 184 EQLsLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELeeeLEQLENELEAAALEERLKEARLLLLIAAALLALLG 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 309 LDNQPKGALKKLIYAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQK--LQQKL 386
Cdd:COG4717 264 LGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPeeLLELL 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 387 KVITELYQENE--MKLHRKLTVEEnYRLEKEEKLSKVDekishaTEELETCRQRAKDLEE--ELERTIHSYQGQVISHEK 462
Cdd:COG4717 344 DRIEELQELLReaEELEEELQLEE-LEQEIAALLAEAG------VEDEEELRAALEQAEEyqELKEELEELEEQLEELLG 416
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 1761178521 463 KAHDNWLAA---------RTLERNLNDLRKENAHNRQKLTETEFKFELLEKD 505
Cdd:COG4717 417 ELEELLEALdeeeleeelEELEEELEELEEELEELREELAELEAELEQLEED 468
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
239-454 |
6.98e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 6.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 239 KEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLkmkDWAAVLGEADDgnlDLDMKSGLENTAALDNQpkgaLK 318
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERRE---ALQRLAEYSWD---EIDVASAEREIAELEAE----LE 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 319 KLIyaaKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEktefesesqklQQKLKVITELYQENEM 398
Cdd:COG4913 679 RLD---ASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEE-----------LDELQDRLEAAEDLAR 744
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1761178521 399 KLHRKLTVEENYRLEKEEKLSKVDEKIshaTEELETCRQRAKDLEEELERTIHSYQ 454
Cdd:COG4913 745 LELRALLEERFAAALGDAVERELRENL---EERIDALRARLNRAEEELERAMRAFN 797
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
73-484 |
1.26e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 1.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 73 REKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEIL 152
Cdd:COG1196 310 RRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 153 LLEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLL 232
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 233 QETEMMKEQVNDLDkQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDW---------------------AAVLGEAD 291
Cdd:COG1196 470 EEAALLEAALAELL-EELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLrglagavavligveaayeaalEAALAAAL 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 292 DGNLDLDMKSGLENTAALDNQPKGALKKL--------------------IYAAKLNASLKALEGERNQVYTQLSEVDQ-- 349
Cdd:COG1196 549 QNIVVEDDEVAAAAIEYLKAAKAGRATFLpldkiraraalaaalargaiGAAVDLVASDLREADARYYVLGDTLLGRTlv 628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 350 -----------VKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKLHRKLTVEENYRL-EKEEK 417
Cdd:COG1196 629 aarleaalrraVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEeEEERE 708
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1761178521 418 LSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEKKAHDNWLAARTLERNLNDLRKE 484
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
75-500 |
1.52e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 1.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 75 KKLALELSALIEEKCKlldKVSIVQKEYEGLESSLKEAsfeKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEILLL 154
Cdd:PTZ00121 1328 KKKADAAKKKAEEAKK---AAEAAKAEAEAAADEAEAA---EEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAE 1401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 155 EEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQE 234
Cdd:PTZ00121 1402 EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE 1481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 235 TEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIEtlvtsllKMKDWAAVLGEADDGNLDLDMKSGLENTAALDNQPK 314
Cdd:PTZ00121 1482 AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA-------EEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKA 1554
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 315 GALKKLIYAAKLNASLKAlEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKvitelYQ 394
Cdd:PTZ00121 1555 EELKKAEEKKKAEEAKKA-EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK-----KA 1628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 395 ENEMKLHRKLTVEENYRLEKEEKLSKVDEKISHATEEL----ETCRQRAKDL--EEELERTIHSYQGQVISHEKKAHDNW 468
Cdd:PTZ00121 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEakkaEEDKKKAEEAkkAEEDEKKAAEALKKEAEEAKKAEELK 1708
|
410 420 430
....*....|....*....|....*....|..
gi 1761178521 469 LAARTLERNLNDLRKENAHNRQKLTETEFKFE 500
Cdd:PTZ00121 1709 KKEAEEKKKAEELKKAEEENKIKAEEAKKEAE 1740
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
72-462 |
1.85e-06 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 51.50 E-value: 1.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 72 GREKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEI 151
Cdd:COG5185 180 EIFGLTLGLLKGISELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIINIEEALKGFQDPESELEDLAQTSDKLEKLV 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 152 LLLEEKLEeerAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEE--------RLKGAIKDALNE-NS 222
Cdd:COG5185 260 EQNTDLRL---EKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESleeqlaaaEAEQELEESKREtET 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 223 QLQESQKQLLQETEMMKEQVNDLDKQK--VALEESRAQAEQALSEKESQIETLVTSLL-KMKDWAAVLGEADDgNLDLDM 299
Cdd:COG5185 337 GIQNLTAEIEQGQESLTENLEAIKEEIenIVGEVELSKSSEELDSFKDTIESTKESLDeIPQNQRGYAQEILA-TLEDTL 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 300 KSGLENTAALDNQPKGALKKLIYAAKLnasLKALEGERNQVYTQLSevDQVKEDLTEHIKSLESkqaSLQSEKTEFESES 379
Cdd:COG5185 416 KAADRQIEELQRQIEQATSSNEEVSKL---LNELISELNKVMREAD--EESQSRLEEAYDEINR---SVRSKKEDLNEEL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 380 QKLQQKLKVITELYQENEMKLHRKL--TVEENYRLEKEEKLSKVDEKISHATEElETCRQRAKDLEEELERTIhSYQGQV 457
Cdd:COG5185 488 TQIESRVSTLKATLEKLRAKLERQLegVRSKLDQVAESLKDFMRARGYAHILAL-ENLIPASELIQASNAKTD-GQAANL 565
|
....*
gi 1761178521 458 ISHEK 462
Cdd:COG5185 566 RTAVI 570
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
93-508 |
2.17e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 51.26 E-value: 2.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 93 DKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEatyENLEQSKSKLEDEILLLEEKLEEERAKHSEQDELM 172
Cdd:pfam05483 240 KQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQD---ENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 173 ADI---SKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMmkeqvnDLDKQK 249
Cdd:pfam05483 317 EDLqiaTKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITM------ELQKKS 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 250 VALEEsraqAEQALSEKESQIETLVTSLlkmkdwaavlgeADDGNLdLDMKSGLENTAaldNQPKGALKKLIYAaklnas 329
Cdd:pfam05483 391 SELEE----MTKFKNNKEVELEELKKIL------------AEDEKL-LDEKKQFEKIA---EELKGKEQELIFL------ 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 330 LKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITElyQENEMKLHRKLTVEEN 409
Cdd:pfam05483 445 LQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQ--EASDMTLELKKHQEDI 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 410 YRLEKEE-----KLSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEKKAHDNWLAARTLERNLNDLRKE 484
Cdd:pfam05483 523 INCKKQEermlkQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQ 602
|
410 420
....*....|....*....|....
gi 1761178521 485 NAHNRQKLTETEFKFELLEKDPYA 508
Cdd:pfam05483 603 IENKNKNIEELHQENKALKKKGSA 626
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
162-490 |
2.80e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.99 E-value: 2.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 162 RAKHSEQDELMADISKRIQSLedeskslKSQVAEAKTTFRIFEINEERLKgaikdalNENSQLQES-QKQLLQETEMMKE 240
Cdd:pfam12128 617 REKQAAAEEQLVQANGELEKA-------SREETFARTALKNARLDLRRLF-------DEKQSEKDKkNKALAERKDSANE 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 241 QVNDLDKQKVALEEsraQAEQALSEKESQIETLVTSllKMKDWAAVLGEADDGNLDLDMKSGLENTA------ALDNQPK 314
Cdd:pfam12128 683 RLNSLEAQLKQLDK---KHQAWLEEQKEQKREARTE--KQAYWQVVEGALDAQLALLKAAIAARRSGakaelkALETWYK 757
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 315 GALKKL----IYAAKLNASLKALEG-------------------------ERNQVYTQLSEVDQVKEDLTEHIKSLeskQ 365
Cdd:pfam12128 758 RDLASLgvdpDVIAKLKREIRTLERkieriavrrqevlryfdwyqetwlqRRPRLATQLSNIERAISELQQQLARL---I 834
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 366 ASLQSEKTEFESESQKLQQKLKVITElyqenemkLHRKLTVEENY--RLEKEEKLSKVDEKISHATEELETCRQRAKDLE 443
Cdd:pfam12128 835 ADTKLRRAKLEMERKASEKQQVRLSE--------NLRGLRCEMSKlaTLKEDANSEQAQGSIGERLAQLEDLKLKRDYLS 906
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1761178521 444 EELERTIHSYQGQVISHEKKAHD-NWLAARTLERNLNDLRKENAHNRQ 490
Cdd:pfam12128 907 ESVKKYVEHFKNVIADHSGSGLAeTWESLREEDHYQNDKGIRLLDYRK 954
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
323-496 |
3.00e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 3.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 323 AAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITEL---YQENEMK 399
Cdd:COG1196 241 LEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERrreLEERLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 400 LHRKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTihsyQGQVISHEKKAHDNWLAARTLERNLN 479
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA----EAELAEAEEELEELAEELLEALRAAA 396
|
170
....*....|....*..
gi 1761178521 480 DLRKENAHNRQKLTETE 496
Cdd:COG1196 397 ELAAQLEELEEAEEALL 413
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
63-391 |
3.10e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 51.21 E-value: 3.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 63 RSIRSRFYVGREKKLALELSALI--------EEKCKLLDKVSIVQKEYEGLesslkeasfekesteaQSLEfvegSQISE 134
Cdd:TIGR01612 662 KSELSKIYEDDIDALYNELSSIVkenaidntEDKAKLDDLKSKIDKEYDKI----------------QNME----TATVE 721
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 135 ATYENLEQSKSKLEdeillleekleeerakhseqdELMADISKRIQSleDESKSLKSQVAEakttfriFEINEERLKGAI 214
Cdd:TIGR01612 722 LHLSNIENKKNELL---------------------DIIVEIKKHIHG--EINKDLNKILED-------FKNKEKELSNKI 771
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 215 KDALNENSQLQESQKQLLQETEMMKEQVNdLDKQKValEESRAQAEQA------LSEKESQIETLVTSLLKMKDwaAVLG 288
Cdd:TIGR01612 772 NDYAKEKDELNKYKSKISEIKNHYNDQIN-IDNIKD--EDAKQNYDKSkeyiktISIKEDEIFKIINEMKFMKD--DFLN 846
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 289 EAD-----DGNLDLDMKSGLENTAALDNQPKGAL--KKL-IYAAKLNAS-------LKALEGERNQVYTqLSEVD---QV 350
Cdd:TIGR01612 847 KVDkfinfENNCKEKIDSEHEQFAELTNKIKAEIsdDKLnDYEKKFNDSkslineiNKSIEEEYQNINT-LKKVDeyiKI 925
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1761178521 351 KEDLTEHIKSLESKQASLQsektefesesQKLQQKLKVITE 391
Cdd:TIGR01612 926 CENTKESIEKFHNKQNILK----------EILNKNIDTIKE 956
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
77-387 |
3.40e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 3.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 77 LALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFvegsqisEATYENLEQSKSklEDEILLLEE 156
Cdd:TIGR02169 728 LEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKL-------EEALNDLEARLS--HSRIPEIQA 798
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 157 KLEEERAKHSEQDELMADISKRIQS-------LEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQK 229
Cdd:TIGR02169 799 ELSKLEEEVSRIEARLREIEQKLNRltlekeyLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR 878
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 230 QLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLlkmkdwAAVLGEADDgnLDLDMKSGLENTAAL 309
Cdd:TIGR02169 879 DLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKL------EALEEELSE--IEDPKGEDEEIPEEE 950
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1761178521 310 DNQPKGALKKLiyaaKLNASLKALEGERNQVytqLSEVDQVKEDLTEhiksLESKQASLQSEKTEFESESQKLQQKLK 387
Cdd:TIGR02169 951 LSLEDVQAELQ----RVEEEIRALEPVNMLA---IQEYEEVLKRLDE----LKEKRAKLEEERKAILERIEEYEKKKR 1017
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
75-498 |
4.60e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 4.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 75 KKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEaqslEFVEGSQISEATYENLEQSKSKLEDEILLL 154
Cdd:PRK03918 313 EKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELE----ERHELYEEAKAKKEELERLKKRLTGLTPEK 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 155 EEKLEEERAKHSEqdELMADISK---RIQSLEDESKSLKSQVAEAKTTFRIF-----EINEE-------RLKGAIKDALN 219
Cdd:PRK03918 389 LEKELEELEKAKE--EIEEEISKitaRIGELKKEIKELKKAIEELKKAKGKCpvcgrELTEEhrkelleEYTAELKRIEK 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 220 ENSQLQESQKQL---LQETEMMKEQVNDLDKQKVALEESRAQAE-------QALSEKESQIETLVTSLLKMKdwaavlGE 289
Cdd:PRK03918 467 ELKEIEEKERKLrkeLRELEKVLKKESELIKLKELAEQLKELEEklkkynlEELEKKAEEYEKLKEKLIKLK------GE 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 290 ADDGNLDLDMKSGLEntaaldnqpkgalKKLiyaAKLNASLKALEGERNQVYTQLSE-----VDQVKEDLTE-------- 356
Cdd:PRK03918 541 IKSLKKELEKLEELK-------------KKL---AELEKKLDELEEELAELLKELEElgfesVEELEERLKElepfyney 604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 357 -----HIKSLESKQASLQSEKTEFESESQKLQQKLKVITELyqENEMKLHRKLTVEENYRlEKEEKLSKVDEKISHATEE 431
Cdd:PRK03918 605 lelkdAEKELEREEKELKKLEEELDKAFEELAETEKRLEEL--RKELEELEKKYSEEEYE-ELREEYLELSRELAGLRAE 681
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1761178521 432 LEtcrqRAKDLEEELERTIHSYQGQVISHEKKAHDNWLAARTLERnLNDLRKENAHNRQKLTETEFK 498
Cdd:PRK03918 682 LE----ELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALER-VEELREKVKKYKALLKERALS 743
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
331-448 |
5.09e-06 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 50.24 E-value: 5.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 331 KALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFEsesQKLQQKLKVITELyqENEMKLHRKltvEENY 410
Cdd:COG2433 388 KELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELE---AELEEKDERIERL--ERELSEARS---EERR 459
|
90 100 110
....*....|....*....|....*....|....*...
gi 1761178521 411 RLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELER 448
Cdd:COG2433 460 EIRKDREISRLDREIERLERELEEERERIEELKRKLER 497
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
75-504 |
6.75e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.68 E-value: 6.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 75 KKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEfVEGSQISEATYENLEQSKSKLEDEILLL 154
Cdd:PRK03918 234 EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKE-LKELKEKAEEYIKLSEFYEEYLDELREI 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 155 EEKLEEERAKHSEQDELMADISK---RIQSLEDESKSLKSQVAEAKTTFRIFEineerlkgaikDALNENSQLQESQKQL 231
Cdd:PRK03918 313 EKRLSRLEEEINGIEERIKELEEkeeRLEELKKKLKELEKRLEELEERHELYE-----------EAKAKKEELERLKKRL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 232 LQET-EMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAV-------LGEADDGNL----DLDM 299
Cdd:PRK03918 382 TGLTpEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgreLTEEHRKELleeyTAEL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 300 KSGLENTAALDNQPKgalkkliyaaKLNASLKALEGERNQVYTQLSEvdqvkEDLTEHIKSLESKQASLQSEK-----TE 374
Cdd:PRK03918 462 KRIEKELKEIEEKER----------KLRKELRELEKVLKKESELIKL-----KELAEQLKELEEKLKKYNLEElekkaEE 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 375 FE---SESQKLQQKLKVI-TELYQENEMKlhRKLTVEENYRLEKEEKLSKVDEKIshateeletcRQRAKDLEEELERTI 450
Cdd:PRK03918 527 YEklkEKLIKLKGEIKSLkKELEKLEELK--KKLAELEKKLDELEEELAELLKEL----------EELGFESVEELEERL 594
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1761178521 451 HSYqgqvisheKKAHDNWLAA-------RTLERNLNDLRKENAHNRQKLTETEFKFELLEK 504
Cdd:PRK03918 595 KEL--------EPFYNEYLELkdaekelEREEKELKKLEEELDKAFEELAETEKRLEELRK 647
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
104-447 |
8.20e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.65 E-value: 8.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 104 GLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKskleDEILLLEEKLEEERAKHSEQDELMADISKRIQSLE 183
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERR----EELETLEAEIEDLRETIAETEREREELAEEVRDLR 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 184 DESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQE-------SQKQLLQETEMMKEQVNDLDKQKVALEESR 256
Cdd:PRK02224 286 ERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDrleecrvAAQAHNEEAESLREDADDLEERAEELREEA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 257 AQAEQALSEKESQIETLVTSLLKMKDWAAVLGEA-DDGNLDLDmksGLENTAALDNQPKGALKKLIyaAKLNASLKALEG 335
Cdd:PRK02224 366 AELESELEEAREAVEDRREEIEELEEEIEELRERfGDAPVDLG---NAEDFLEELREERDELRERE--AELEATLRTARE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 336 ERNQVYT---------------------QLSEVDQVKEDLTEHIKSLESKQASLQS------EKTEFESESQKLQQKLKV 388
Cdd:PRK02224 441 RVEEAEAlleagkcpecgqpvegsphveTIEEDRERVEELEAELEDLEEEVEEVEErleraeDLVEAEDRIERLEERRED 520
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1761178521 389 ITELYQENEMKLHRKLTVEENYRLEKEEKLSKVDEKISHAT---EELETCRQRAKDLEEELE 447
Cdd:PRK02224 521 LEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAeaeEEAEEAREEVAELNSKLA 582
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
77-419 |
1.48e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 77 LALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEILLLEE 156
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 157 KLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETE 236
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 237 MMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSL--LKMKDWAAVLGEaddgnldldmksglentaaldnqpk 314
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLeeAELKELQAELEE------------------------- 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 315 galkkliyaakLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQ 394
Cdd:TIGR02168 445 -----------LEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLK 513
|
330 340 350
....*....|....*....|....*....|.
gi 1761178521 395 ENEMK------LHRKLTVEENYRLEKEEKLS 419
Cdd:TIGR02168 514 NQSGLsgilgvLSELISVDEGYEAAIEAALG 544
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
205-505 |
1.50e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 48.47 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 205 INEERLKGaikdaLNENSQLQESQKQLLQEtemmkeqvnDLDKQKVALEESRAQAEQALSEKESQIETLVTsllKMKDWA 284
Cdd:PHA02562 171 LNKDKIRE-----LNQQIQTLDMKIDHIQQ---------QIKTYNKNIEEQRKKNGENIARKQNKYDELVE---EAKTIK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 285 AVLGEADDGNLDLDMKSGlentaaldnQPKGALKKL-IYAAKLNASLKALEGERNqVYTQLSEVDQVKEDLTEHIKSLES 363
Cdd:PHA02562 234 AEIEELTDELLNLVMDIE---------DPSAALNKLnTAAAKIKSKIEQFQKVIK-MYEKGGVCPTCTQQISEGPDRITK 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 364 KQASLQSEKTEFESESQKlQQKLKVITELYQENEMKLHrkltveenyrlEKEEKLSKVDEKIShateeleTCRQRAKDLE 443
Cdd:PHA02562 304 IKDKLKELQHSLEKLDTA-IDELEEIMDEFNEQSKKLL-----------ELKNKISTNKQSLI-------TLVDKAKKVK 364
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1761178521 444 EELERTihsyQGQVISHEKkahdnwlAARTLERNLNDLRKENAHNRQKLTETEFKFELLeKD 505
Cdd:PHA02562 365 AAIEEL----QAEFVDNAE-------ELAKLQDELDKIVKTKSELVKEKYHRGIVTDLL-KD 414
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
74-504 |
1.90e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.43 E-value: 1.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 74 EKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLK-------EASFEKESTEAQSLEFVEGSQISEATYENLEQSKSK 146
Cdd:pfam02463 295 EEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKkekeeieELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEE 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 147 LEDEILLLEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQE 226
Cdd:pfam02463 375 LLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELE 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 227 SQKQLLQETEMMKEQVNDL--DKQKVALEESRAQAEQALSEKE-SQIETLVTSLLKMKDWAAVLGEADDGNLDLDMKSGL 303
Cdd:pfam02463 455 KQELKLLKDELELKKSEDLlkETQLVKLQEQLELLLSRQKLEErSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDL 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 304 ENTAAldnqpKGALKKLIYAAKLNASLKALEGERNQVYTQLSEVDQVKeDLTEHIKSLESKQASLQSEKTEFES--ESQK 381
Cdd:pfam02463 535 GVAVE-----NYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGA-RKLRLLIPKLKLPLKSIAVLEIDPIlnLAQL 608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 382 LQQKLKVITELYQENEMKLHRKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLE-----------------E 444
Cdd:pfam02463 609 DKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSEltkelleiqelqekaesE 688
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 445 ELERTIHSYQGQVISHEKKAHDNWLAARTLERNLNDLRKENAHNRQKLTETEFKFELLEK 504
Cdd:pfam02463 689 LAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEE 748
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
172-395 |
2.65e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.70 E-value: 2.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 172 MADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINeerlkgaikdalNENSQLQESQKQLLQETEMMKEQVNDLDKQKVA 251
Cdd:COG3206 170 REEARKALEFLEEQLPELRKELEEAEAALEEFRQK------------NGLVDLSEEAKLLLQQLSELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 252 LEESRAQAEQALSEKESQIETLVTSllkmkdwaAVLGEADDGNLDLDMKSGLENTAALDNQPKgalkkliyaaklnasLK 331
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPELLQS--------PVIQQLRAQLAELEAELAELSARYTPNHPD---------------VI 294
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1761178521 332 ALEGERNQVYTQL-SEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQE 395
Cdd:COG3206 295 ALRAQIAALRAQLqQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLERE 359
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
74-505 |
2.80e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 2.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 74 EKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSlefvegsQISEAtyENLEQSKSKLEDEILL 153
Cdd:PTZ00121 1389 EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKK-------KAEEA--KKADEAKKKAEEAKKA 1459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 154 LEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQllq 233
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKA--- 1536
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 234 ETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKmkdwAAVLGEADDGNLDLDMKSGLENTAALDNQP 313
Cdd:PTZ00121 1537 DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK----AEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 314 KGALKKLIYAAKLnaslKALEGERNQVytqlsevDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELY 393
Cdd:PTZ00121 1613 KKAEEAKIKAEEL----KKAEEEKKKV-------EQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 394 QENEMKlhRKltVEENYRLEKEEKlsKVDEKISHATEELETCRQRAKDLEEelERTIHSYQGQVISHEKKAHDNWLAART 473
Cdd:PTZ00121 1682 KAEEDE--KK--AAEALKKEAEEA--KKAEELKKKEAEEKKKAEELKKAEE--ENKIKAEEAKKEAEEDKKKAEEAKKDE 1753
|
410 420 430
....*....|....*....|....*....|....*.
gi 1761178521 474 LERN----LNDLRKENAHNRQKLTETEFKFELLEKD 505
Cdd:PTZ00121 1754 EEKKkiahLKKEEEKKAEEIRKEKEAVIEEELDEED 1789
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
177-494 |
3.03e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.66 E-value: 3.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 177 KRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENS---------------------------------- 222
Cdd:pfam02463 153 ERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQelklkeqakkaleyyqlkekleleeeyllyldyl 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 223 QLQESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVLGEADDGNLDLDMKSG 302
Cdd:pfam02463 233 KLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDD 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 303 LENTAALDNQPKGALKKLIYAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKL 382
Cdd:pfam02463 313 EEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKL 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 383 QQKLKVITELYQENEMKLHRKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEK 462
Cdd:pfam02463 393 KEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSED 472
|
330 340 350
....*....|....*....|....*....|..
gi 1761178521 463 KAHDNWLAARTLERNLNDLRKENAHNRQKLTE 494
Cdd:pfam02463 473 LLKETQLVKLQEQLELLLSRQKLEERSQKESK 504
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
175-279 |
3.37e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.08 E-value: 3.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 175 ISKRIQSLEDESKSLKSQV---AEAKTTFRIFEINEE--RLKGAIKDALNE-NSQLQESQKQLLQETEMMKEQVNDLDKQ 248
Cdd:PRK12704 29 AEAKIKEAEEEAKRILEEAkkeAEAIKKEALLEAKEEihKLRNEFEKELRErRNELQKLEKRLLQKEENLDRKLELLEKR 108
|
90 100 110
....*....|....*....|....*....|....
gi 1761178521 249 KVALEESR---AQAEQALSEKESQIETLVTSLLK 279
Cdd:PRK12704 109 EEELEKKEkelEQKQQELEKKEEELEELIEEQLQ 142
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
177-484 |
3.75e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.42 E-value: 3.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 177 KRIQSLEDESKSLKSQVAEAKTTFrifeinEERLKGAIKDALNENSQLQESQKqllqETEMMKEQVNDLDKQKVALEESR 256
Cdd:pfam15921 317 RQLSDLESTVSQLRSELREAKRMY------EDKIEELEKQLVLANSELTEART----ERDQFSQESGNLDDQLQKLLADL 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 257 AQAEQALSEKESQIETLvtsllkmkdWAAVLG----------EADDGNLDLDMKSGLenTAALDNQPKGALKKLIYAAK- 325
Cdd:pfam15921 387 HKREKELSLEKEQNKRL---------WDRDTGnsitidhlrrELDDRNMEVQRLEAL--LKAMKSECQGQMERQMAAIQg 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 326 LNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKLhrklt 405
Cdd:pfam15921 456 KNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKL----- 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 406 vEENYRLEKEEklskvdEKISHATEELETCRQRAKDLE---EELERTIHSYQGQVISHEKKAHDNWLAARTLERNLNDLR 482
Cdd:pfam15921 531 -QELQHLKNEG------DHLRNVQTECEALKLQMAEKDkviEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRR 603
|
..
gi 1761178521 483 KE 484
Cdd:pfam15921 604 LE 605
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
162-504 |
3.85e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.48 E-value: 3.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 162 RAKHSEQDELMADISKRiqSLEDESKSLKSQVAEAKTtfRIFEI------NEERLKGAIKDALNENSQLQESQKQLLQET 235
Cdd:pfam01576 195 RLKKEEKGRQELEKAKR--KLEGESTDLQEQIAELQA--QIAELraqlakKEEELQAALARLEEETAQKNNALKKIRELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 236 EMMKEQVNDLDKQKVAleesRAQAEQALSEKESQIETLVTSLLKMKDWAAV---LGEADDGNLDLDMKSGLENTAALDNQ 312
Cdd:pfam01576 271 AQISELQEDLESERAA----RNKAEKQRRDLGEELEALKTELEDTLDTTAAqqeLRSKREQEVTELKKALEEETRSHEAQ 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 313 PKGALKKLIYA---------------AKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQS------- 370
Cdd:pfam01576 347 LQEMRQKHTQAleelteqleqakrnkANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQArlseser 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 371 EKTEFESESQKLQQKLKVITELYQENEMKLHrkltveenyRLEKEekLSKVDEKIsHATEEL--ETCRQ------RAKDL 442
Cdd:pfam01576 427 QRAELAEKLSKLQSELESVSSLLNEAEGKNI---------KLSKD--VSSLESQL-QDTQELlqEETRQklnlstRLRQL 494
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1761178521 443 EEE-----------------LERTIHSYQGQVISHEKKAHDNWLAARTLERNLNDLRKENAHNRQKLTETEFKFELLEK 504
Cdd:pfam01576 495 EDErnslqeqleeeeeakrnVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEK 573
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
80-506 |
6.32e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 6.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 80 ELSALIEEKCKLLDKVSIVQKEYEGLESSLKE-----ASFEKESTEAQSLEFVEGSQISEATYENLEQskskledeilll 154
Cdd:pfam12128 355 ELENLEERLKALTGKHQDVTAKYNRRRSKIKEqnnrdIAGIKDKLAKIREARDRQLAVAEDDLQALES------------ 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 155 eekleEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQE 234
Cdd:pfam12128 423 -----ELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQA 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 235 TEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLK-MKDWAAVLGEADDGNL----DLDmksglenTAAL 309
Cdd:pfam12128 498 RKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKeAPDWEQSIGKVISPELlhrtDLD-------PEVW 570
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 310 DNQPKGALKklIYAAKLNasLKALEGERNQVYTQL--SEVDQVKEDLtehiKSLESKQASLQSEKTEFESESQKLQQKLK 387
Cdd:pfam12128 571 DGSVGGELN--LYGVKLD--LKRIDVPEWAASEEElrERLDKAEEAL----QSAREKQAAAEEQLVQANGELEKASREET 642
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 388 VITELYQENEMKLHRKLTVEENYRLEKEEKLSkvdEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEKKAHDN 467
Cdd:pfam12128 643 FARTALKNARLDLRRLFDEKQSEKDKKNKALA---ERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAY 719
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1761178521 468 WLAARTLERNLNDL-------RKENAHNRQKLTETEFKFELLEKDP 506
Cdd:pfam12128 720 WQVVEGALDAQLALlkaaiaaRRSGAKAELKALETWYKRDLASLGV 765
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
177-505 |
7.59e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.17 E-value: 7.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 177 KRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKEQVNDLDKQKVALEESr 256
Cdd:TIGR04523 54 KELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQ- 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 257 aqaeqaLSEKESQIETLVTSLLKMKDWAAVLGEADDgnlDLD-MKSGLENTaaldnqpKGALKKLIyaAKLNASLKALEG 335
Cdd:TIGR04523 133 ------KKENKKNIDKFLTEIKKKEKELEKLNNKYN---DLKkQKEELENE-------LNLLEKEK--LNIQKNIDKIKN 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 336 ERNQVYTQLSEVDQVKED---LTEHIKSLESKQASL-------QSEKTEFESESQKLQQKLKVITELYQENEMKLHRK-L 404
Cdd:TIGR04523 195 KLLKLELLLSNLKKKIQKnksLESQISELKKQNNQLkdniekkQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKqK 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 405 TVEENYRL--EKEEKLSKVDEKIShateELEtcRQRAKDLEEELERTIHSYQGQVISHEKKAHDNWLAARTLERNLNDLR 482
Cdd:TIGR04523 275 ELEQNNKKikELEKQLNQLKSEIS----DLN--NQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLK 348
|
330 340 350
....*....|....*....|....*....|
gi 1761178521 483 KE-------NAHNRQKLTETEFKFELLEKD 505
Cdd:TIGR04523 349 KEltnseseNSEKQRELEEKQNEIEKLKKE 378
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
80-448 |
9.47e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 9.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 80 ELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEILLLEEKLE 159
Cdd:PRK02224 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 160 EERA---KHSEQDELM----ADISKRIQSLEDESKSLKSQVAEAKTTFR-----IFEINEE--RLKGAIKDALNENSQLQ 225
Cdd:PRK02224 332 ECRVaaqAHNEEAESLredaDDLEERAEELREEAAELESELEEAREAVEdrreeIEELEEEieELRERFGDAPVDLGNAE 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 226 ESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQ---------------------ALSEKESQIETLVTSLLKMKDWA 284
Cdd:PRK02224 412 DFLEELREERDELREREAELEATLRTARERVEEAEAlleagkcpecgqpvegsphveTIEEDRERVEELEAELEDLEEEV 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 285 AVLGEADDGNLDL----DMKSGLENTAA-----LDNQPKGALKKLIYAAKLNASLKALEGE----RNQVYTQLSEVDQVK 351
Cdd:PRK02224 492 EEVEERLERAEDLveaeDRIERLEERREdleelIAERRETIEEKRERAEELRERAAELEAEaeekREAAAEAEEEAEEAR 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 352 E----------DLTEHIKSLEsKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKL----HRKLTVEENY---RLEK 414
Cdd:PRK02224 572 EevaelnsklaELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLaekrERKRELEAEFdeaRIEE 650
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1761178521 415 --------EEKLSKVDEKISHATEELETCRQRAKDLEEELER 448
Cdd:PRK02224 651 aredkeraEEYLEQVEEKLDELREERDDLQAEIGAVENELEE 692
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
59-494 |
9.82e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.19 E-value: 9.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 59 WRGFRSIRSRF-YVGREKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVE------GSQ 131
Cdd:TIGR00606 556 SRHSDELTSLLgYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDklfdvcGSQ 635
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 132 ISEATYENLEQSKSKLEDEILLLEEKLEEERA---------------------KHSEQDELMADISKRIQSLEDESKSLK 190
Cdd:TIGR00606 636 DEESDLERLKEEIEKSSKQRAMLAGATAVYSQfitqltdenqsccpvcqrvfqTEAELQEFISDLQSKLRLAPDKLKSTE 715
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 191 SQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQEtemMKEQVNDLDKQKVALEESRAQAEQAlseKESQI 270
Cdd:TIGR00606 716 SELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRD---IQRLKNDIEEQETLLGTIMPEEESA---KVCLT 789
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 271 ETLVTSLLKM------KDWAAVLGEADDGNLDLDM----KSGLENTAALDN--QPKGALKKLI-----YAAKLNASLKAL 333
Cdd:TIGR00606 790 DVTIMERFQMelkdveRKIAQQAAKLQGSDLDRTVqqvnQEKQEKQHELDTvvSKIELNRKLIqdqqeQIQHLKSKTNEL 869
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 334 EGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLkvitelyQENEMKLHRKLTVEENYRLE 413
Cdd:TIGR00606 870 KSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQ-------QEKEELISSKETSNKKAQDK 942
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 414 KEEKLSKVDEKISHATE-------------------------ELETCRQRAKDLEEELERTIHSYQGQVIsHEKKAHDNw 468
Cdd:TIGR00606 943 VNDIKEKVKNIHGYMKDienkiqdgkddylkqketelntvnaQLEECEKHQEKINEDMRLMRQDIDTQKI-QERWLQDN- 1020
|
490 500
....*....|....*....|....*.
gi 1761178521 469 LAARTLERNLNDLRKENAHNRQKLTE 494
Cdd:TIGR00606 1021 LTLRKRENELKEVEEELKQHLKEMGQ 1046
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
73-448 |
1.05e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.08 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 73 REKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEIL 152
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 153 LLEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLL 232
Cdd:COG1196 425 ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 233 QETEMMKEQVNDLDKQKV----------------ALEESRAQAEQALSEKESQIETLVTSLLKMK--------------- 281
Cdd:COG1196 505 GFLEGVKAALLLAGLRGLagavavligveaayeaALEAALAAALQNIVVEDDEVAAAAIEYLKAAkagratflpldkira 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 282 -------------DWAAVLGEADDGNLDLDMKSGLENTAALDNQPKGALKKLIYAAKLNASLKALEGERNQVY------- 341
Cdd:COG1196 585 raalaaalargaiGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSaggsltg 664
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 342 ----TQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKLHRKLTVEENYR---LEK 414
Cdd:COG1196 665 gsrrELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLeelLEE 744
|
410 420 430
....*....|....*....|....*....|....
gi 1761178521 415 EEKLSKVDEKISHATEELETCRQRAKDLEEELER 448
Cdd:COG1196 745 EELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
169-456 |
1.34e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 45.66 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 169 DELMADIS------KRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKEQV 242
Cdd:PRK01156 176 DMLRAEISnidyleEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYE 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 243 NDLDKQkvaleESRAQAEQALSEKESQIETLVTSLLKMKDWAA---VLGEADDGNLDLDMKSGLENTAALDNQPKGALKK 319
Cdd:PRK01156 256 SEIKTA-----ESDLSMELEKNNYYKELEERHMKIINDPVYKNrnyINDYFKYKNDIENKKQILSNIDAEINKYHAIIKK 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 320 LiyaaklnaslKALEGERNQVYTQLSEvdqvKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMK 399
Cdd:PRK01156 331 L----------SVLQKDYNDYIKKKSR----YDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEI 396
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 400 LHRKLTVEENYRLEKEEKLSKVDE---KISHATEELETCRQRakdlEEELERTIHSYQGQ 456
Cdd:PRK01156 397 LKIQEIDPDAIKKELNEINVKLQDissKVSSLNQRIRALREN----LDELSRNMEMLNGQ 452
|
|
| RNase_Y_N |
pfam12072 |
RNase Y N-terminal region; |
177-274 |
1.35e-04 |
|
RNase Y N-terminal region;
Pssm-ID: 463456 [Multi-domain] Cd Length: 201 Bit Score: 43.72 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 177 KRIQSLEDESKSLKS---QVAEAKTTFRIFEINEE--RLKGAIKDALNE-NSQLQESQKQLLQETEMMKEQVNDLDKQKV 250
Cdd:pfam12072 27 AKIGSAEELAKRIIEeakKEAETKKKEALLEAKEEihKLRAEAERELKErRNELQRQERRLLQKEETLDRKDESLEKKEE 106
|
90 100
....*....|....*....|....*..
gi 1761178521 251 AL---EESRAQAEQALSEKESQIETLV 274
Cdd:pfam12072 107 SLekkEKELEAQQQQLEEKEEELEELI 133
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
330-510 |
2.35e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 330 LKALEGERNQVYTQLSEVDQvkedLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVItELYQENEmKLHRKLTvEEN 409
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAE----LQEELEELEEELEELEAELEELREELEKLEKLLQLL-PLYQELE-ALEAELA-ELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 410 YRLEK-EEKLskvdEKISHATEELETCRQRAKDLEEELERTIHSYQgqvISHEKKAHDNWLAARTLERNLNDLRKENAHN 488
Cdd:COG4717 146 ERLEElEERL----EELRELEEELEELEAELAELQEELEELLEQLS---LATEEELQDLAEELEELQQRLAELEEELEEA 218
|
170 180
....*....|....*....|..
gi 1761178521 489 RQKLTETEFKFELLEKDPYALD 510
Cdd:COG4717 219 QEELEELEEELEQLENELEAAA 240
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
76-504 |
2.79e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.65 E-value: 2.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 76 KLALELSALIEEKCKLLDKVSIVQKEYEGLE---SSLKEASFEKESTEAQSLEFVEGSQisEATYENLEQSKSKLEDEIL 152
Cdd:TIGR00606 420 KERLKQEQADEIRDEKKGLGRTIELKKEILEkkqEELKFVIKELQQLEGSSDRILELDQ--ELRKAERELSKAEKNSLTE 497
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 153 LLEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKS--QVAEAKTTF--RIFEIN---EERLKGAIKDALNEnSQLQ 225
Cdd:TIGR00606 498 TLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQmeMLTKDKMDKdeQIRKIKsrhSDELTSLLGYFPNK-KQLE 576
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 226 ESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVlgEADDGNLDLDMKSGLEN 305
Cdd:TIGR00606 577 DWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDE--ESDLERLKEEIEKSSKQ 654
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 306 TAALdnqpkgALKKLIYAAKLNASLkalegERNQVYTQLSEVD-QVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQ 384
Cdd:TIGR00606 655 RAML------AGATAVYSQFITQLT-----DENQSCCPVCQRVfQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEK 723
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 385 KLKVITELY--QENEMKLHRKLTVEENYRLEK-EEKLSKVDEKISHATEELETC---RQRAKDLEEELErTIHSYQGQVI 458
Cdd:TIGR00606 724 RRDEMLGLApgRQSIIDLKEKEIPELRNKLQKvNRDIQRLKNDIEEQETLLGTImpeEESAKVCLTDVT-IMERFQMELK 802
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 1761178521 459 SHEKKAHD--NWLAARTLERNLNDLRKENAHNRQKLTETEFKFELLEK 504
Cdd:TIGR00606 803 DVERKIAQqaAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRK 850
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
73-511 |
3.16e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.68 E-value: 3.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 73 REKKLaLELSALIEEKCKLLDKVSIVQKEYEGlESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEIL 152
Cdd:COG5022 932 RLKKL-LNNIDLEEGPSIEYVKLPELNKLHEV-ESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYG 1009
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 153 LLEEKLEEERAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFRIFEINEE--RLKGAIKDALNENSQL--QESQ 228
Cdd:COG5022 1010 ALQESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKGLLLLENNQLQARykALKLRRENSLLDDKQLyqLEST 1089
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 229 KQLLQETEMMKEQVNDLDKQKVALEESRAQAEQ----ALSEKESQIETLVTSLLKMKDWAAVLGEADDGNLDLDMKSGLE 304
Cdd:COG5022 1090 ENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMiklnLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALP 1169
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 305 NTAALDNQPKgalKKLIYAAKLNASLKALEgernqvytqlSEVdqvkEDLTEHIKSLESKQASLQSEKtefeSESQKLQQ 384
Cdd:COG5022 1170 SPPPFAALSE---KRLYQSALYDEKSKLSS----------SEV----NDLKNELIALFSKIFSGWPRG----DKLKKLIS 1228
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 385 KLKVITELYQenemklhrKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSY-------QGQV 457
Cdd:COG5022 1229 EGWVPTEYST--------SLKGFNNLNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLlqyinvgLFNA 1300
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1761178521 458 ISHEKKAHdNWLAARTLERNLNDL-----RKENAH---NRQKLTETEFKFELLEKDPYALDV 511
Cdd:COG5022 1301 LRTKASSL-RWKSATEVNYNSEELddwcrEFEISDvdeELEELIQAVKVLQLLKDDLNKLDE 1361
|
|
| PRK14473 |
PRK14473 |
F0F1 ATP synthase subunit B; Provisional |
176-275 |
3.33e-04 |
|
F0F1 ATP synthase subunit B; Provisional
Pssm-ID: 172948 [Multi-domain] Cd Length: 164 Bit Score: 42.22 E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 176 SKRIQSLEDESKSLKSQVAEAKTTFrifeinEERLKGAIKDALNENSQLQESQKQllQETEMMKEQVNDLDKQKvalEES 255
Cdd:PRK14473 41 TRRIEESLRDAEKVREQLANAKRDY------EAELAKARQEAAKIVAQAQERARA--QEAEIIAQARREAEKIK---EEA 109
|
90 100
....*....|....*....|....
gi 1761178521 256 RAQAEQ----ALSEKESQIETLVT 275
Cdd:PRK14473 110 RAQAEQerqrMLSELKSQIADLVT 133
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
324-471 |
4.04e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 4.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 324 AKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFES---------ESQKLQQKLKvitelYQ 394
Cdd:COG1579 27 KELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEqlgnvrnnkEYEALQKEIE-----SL 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1761178521 395 ENEMKLHRKLTVEENYRLE-KEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEKKAHDNWLAA 471
Cdd:COG1579 102 KRRISDLEDEILELMERIEeLEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPELLAL 179
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
169-453 |
4.13e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 44.27 E-value: 4.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 169 DELMADISKRiQSLEDESKSLKSQVAEAKTTFRIFE---------INEERLKGAIKDALNENSQL----QESQKQLLQET 235
Cdd:TIGR01612 1486 NELKEHIDKS-KGCKDEADKNAKAIEKNKELFEQYKkdvtellnkYSALAIKNKFAKTKKDSEIIikeiKDAHKKFILEA 1564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 236 EMMKEQVNDLDKQKVALEESRA---QAEQALSEKESQIETLVTSLLKMKDwaavlgeaddgnldldmksglentaaldnq 312
Cdd:TIGR01612 1565 EKSEQKIKEIKKEKFRIEDDAAkndKSNKAAIDIQLSLENFENKFLKISD------------------------------ 1614
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 313 pkgaLKKliyaaKLNASLKALEGERNQVY--------TQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFEsesqKLQQ 384
Cdd:TIGR01612 1615 ----IKK-----KINDCLKETESIEKKISsfsidsqdTELKENGDNLNSLQEFLESLKDQKKNIEDKKKELD----ELDS 1681
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1761178521 385 KLKVItelyqENEMKLHRKltveeNYRLEKEEklsKVDEKISHATEELETCRQRakdLEEELERTIHSY 453
Cdd:TIGR01612 1682 EIEKI-----EIDVDQHKK-----NYEIGIIE---KIKEIAIANKEEIESIKEL---IEPTIENLISSF 1734
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
162-498 |
4.55e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 43.66 E-value: 4.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 162 RAKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKTTFrifEINEERLKGAIKDALNENSQLQESQKQLLQETEMMKEQ 241
Cdd:pfam10174 351 RLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDML---DVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSL 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 242 VNDLDKQKVALeesrAQAEQALSEKESQIETLVTSllKMKDWAAVLGEADDGNLDL-DMKSGL--------ENTAALDNQ 312
Cdd:pfam10174 428 QTDSSNTDTAL----TTLEEALSEKERIIERLKEQ--REREDRERLEELESLKKENkDLKEKVsalqpeltEKESSLIDL 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 313 PKGALKKLIYAAKLNASLKALEGE-----------RNQVYT--QLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESES 379
Cdd:pfam10174 502 KEHASSLASSGLKKDSKLKSLEIAveqkkeecsklENQLKKahNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEV 581
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 380 QKLQQKLKvitelyqenEMklhrkltveENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTihsyQGQVIS 459
Cdd:pfam10174 582 ERLLGILR---------EV---------ENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKK----GAQLLE 639
|
330 340 350
....*....|....*....|....*....|....*....
gi 1761178521 460 HEKKAHDNwLAARTLERNLNDLRKENAHNRQKLTETEFK 498
Cdd:pfam10174 640 EARRREDN-LADNSQQLQLEELMGALEKTRQELDATKAR 677
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
73-496 |
5.31e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.80 E-value: 5.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 73 REKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFE--KESTEAQSLEFVEGSQISEATY-ENLEQSKSKLED 149
Cdd:TIGR00618 373 QQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRtsAFRDLQGQLAHAKKQQELQQRYaELCAAAITCTAQ 452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 150 EILLLEEKLEEERAKHSEQDELMADIsKRIQSLEDESKSLKSQVA-EAKTTFRIFEINEERLKGAIKDALNENS------ 222
Cdd:TIGR00618 453 CEKLEKIHLQESAQSLKEREQQLQTK-EQIHLQETRKKAVVLARLlELQEEPCPLCGSCIHPNPARQDIDNPGPltrrmq 531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 223 QLQESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLLKMKDWAAVLGEADDGNLDLDMKSG 302
Cdd:TIGR00618 532 RGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLA 611
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 303 LENTAALDN-QPKGALKKLI-----YAAKLNASLKALEGErnqvytqlsEVDQVKEDLTEHIKSLESKQASLQSEKTEFE 376
Cdd:TIGR00618 612 CEQHALLRKlQPEQDLQDVRlhlqqCSQELALKLTALHAL---------QLTLTQERVREHALSIRVLPKELLASRQLAL 682
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 377 SESQKLQQKLKVITELYQENEMKLHRKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIhsyQGQ 456
Cdd:TIGR00618 683 QKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVL---KAR 759
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1761178521 457 VISHEKKAHDNWLAART------LERNLNDLRKENAHNRQKLTETE 496
Cdd:TIGR00618 760 TEAHFNNNEEVTAALQTgaelshLAAEIQFFNRLREEDTHLLKTLE 805
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
173-466 |
5.48e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 5.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 173 ADISKRIQSLEDESKSLKSQvaeaKTTFRIFEINEERLKGAIKDALNENSQLQESQK------QLLQET----------- 235
Cdd:pfam05483 99 AELKQKENKLQENRKIIEAQ----RKAIQELQFENEKVSLKLEEEIQENKDLIKENNatrhlcNLLKETcarsaektkky 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 236 EMMKEQV--------NDLDKQKVALEESRAQAEQA-------------------------LSEKESQIETLVTSLL---- 278
Cdd:pfam05483 175 EYEREETrqvymdlnNNIEKMILAFEELRVQAENArlemhfklkedhekiqhleeeykkeINDKEKQVSLLLIQITeken 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 279 KMKDWAAVLGEADDGNLDLDMKSGL--ENTAALdNQPKGALKKLIYAAKLN-----ASLKALEgERNQVYTQlsEVDQVK 351
Cdd:pfam05483 255 KMKDLTFLLEESRDKANQLEEKTKLqdENLKEL-IEKKDHLTKELEDIKMSlqrsmSTQKALE-EDLQIATK--TICQLT 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 352 EDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKLhRKLTVEENYRLEKEEKLSKVDEKISHATEE 431
Cdd:pfam05483 331 EEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQL-KIITMELQKKSSELEEMTKFKNNKEVELEE 409
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1761178521 432 LETC----------RQRAKDLEEELERTIHSYQGQVISHEKKAHD 466
Cdd:pfam05483 410 LKKIlaedeklldeKKQFEKIAEELKGKEQELIFLLQAREKEIHD 454
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
179-397 |
6.22e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.36 E-value: 6.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 179 IQSLEDESKSLKSQVAEAKTTFRIFEiNEERLKGAIKDALNENSQLQesqKQLLQETEMMKEQVNDLDKQKVALEESRAQ 258
Cdd:PRK11281 41 VQAQLDALNKQKLLEAEDKLVQQDLE-QTLALLDKIDRQKEETEQLK---QQLAQAPAKLRQAQAELEALKDDNDEETRE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 259 AEQALS--EKESQIETLVTSLlkmKDWAAVLGEAddgNLDL------------DMKSGLENTAALDNQPKG--ALKKLIY 322
Cdd:PRK11281 117 TLSTLSlrQLESRLAQTLDQL---QNAQNDLAEY---NSQLvslqtqperaqaALYANSQRLQQIRNLLKGgkVGGKALR 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 323 A---AKLNASLKALEGE----RN--QVYTQLSEVDQVKEDL-TEHIKSLESKQASLQ----------SEKTEFESESQKL 382
Cdd:PRK11281 191 PsqrVLLQAEQALLNAQndlqRKslEGNTQLQDLLQKQRDYlTARIQRLEHQLQLLQeainskrltlSEKTVQEAQSQDE 270
|
250
....*....|....*
gi 1761178521 383 QQKLKVITELYQENE 397
Cdd:PRK11281 271 AARIQANPLVAQELE 285
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
170-365 |
7.58e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 7.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 170 ELMADISKRIQSLEdESKSLKSQVAEAKTTFRIFEINEERL---KGAIKDALNEN--SQLQESQKQLLQETEMMKEQVND 244
Cdd:COG4913 242 EALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALrlwFAQRRLELLEAelEELRAELARLEAELERLEARLDA 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 245 LDKQKVALEESRAQA--------EQALSEKESQIETLVTSLLKMKDWAAVLGEAddgnLDLDMKSGLENTAALDNQpkga 316
Cdd:COG4913 321 LREELDELEAQIRGNggdrleqlEREIERLERELEERERRRARLEALLAALGLP----LPASAEEFAALRAEAAAL---- 392
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1761178521 317 lkkliyAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQ 365
Cdd:COG4913 393 ------LEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRK 435
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
172-503 |
7.58e-04 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 42.90 E-value: 7.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 172 MADISKRIQSLEDESKSLKsqVAEAKTtfrifEIN--EERLKGA---IKDALNENSQLQESQKQLLQETEMMKEQVNDLD 246
Cdd:PRK04778 81 LPDIEEQLFEAEELNDKFR--FRKAKH-----EINeiESLLDLIeedIEQILEELQELLESEEKNREEVEQLKDLYRELR 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 247 KQkvaLEESRAQAEQALSEKESQIETLVTSLLKMKDwaavlgEADDGN--------LDLDMKsglenTAALDNQ----PK 314
Cdd:PRK04778 154 KS---LLANRFSFGPALDELEKQLENLEEEFSQFVE------LTESGDyveareilDQLEEE-----LAALEQImeeiPE 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 315 GaLKKLiyAAKLNASLKALEgernQVYTQLSE---------VDQVKEDLTEHIKSLESKQASLqsEKTEFESESQKLQQK 385
Cdd:PRK04778 220 L-LKEL--QTELPDQLQELK----AGYRELVEegyhldhldIEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQER 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 386 lkvITELYQ--ENEMKLHRKLtveenyrlekEEKLSKVDEKISHATEEletcrqrAKDLEEELERTIHSYQgqvISHEKK 463
Cdd:PRK04778 291 ---IDQLYDilEREVKARKYV----------EKNSDTLPDFLEHAKEQ-------NKELKEEIDRVKQSYT---LNESEL 347
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1761178521 464 AHdnwlaARTLERNLNDLRKENAHNRQKLTETEFKFELLE 503
Cdd:PRK04778 348 ES-----VRQLEKQLESLEKQYDEITERIAEQEIAYSELQ 382
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
167-505 |
8.63e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.89 E-value: 8.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 167 EQDELMADISKRIQSLEDESkslkSQVAEAKTTFrifeinEERL--KGAIKDALNEnsQLQESQKQLLQETEMMKEQVND 244
Cdd:pfam10174 412 DKDKQLAGLKERVKSLQTDS----SNTDTALTTL------EEALseKERIIERLKE--QREREDRERLEELESLKKENKD 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 245 LDKQKVALEESRAQAEQALSEKESQIETLVTSLLKmKDwaavlgeADDGNLDLDMKSGLENTAALDNQPKGALKKLIYA- 323
Cdd:pfam10174 480 LKEKVSALQPELTEKESSLIDLKEHASSLASSGLK-KD-------SKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVr 551
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 324 --AKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESES--QKLQQKLKVITELYQENEMK 399
Cdd:pfam10174 552 tnPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELESLTlrQMKEQNKKVANIKHGQQEMK 631
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 400 LHRKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTihsyqgQVISHEKKAHdnwlaartlernLN 479
Cdd:pfam10174 632 KKGAQLLEEARRREDNLADNSQQLQLEELMGALEKTRQELDATKARLSST------QQSLAEKDGH------------LT 693
|
330 340 350
....*....|....*....|....*....|..
gi 1761178521 480 DLRKEnahNRQKLTET-EFKFELL-----EKD 505
Cdd:pfam10174 694 NLRAE---RRKQLEEIlEMKQEALlaaisEKD 722
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
317-463 |
9.37e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 9.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 317 LKKLIYAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITEL---- 392
Cdd:COG1579 6 LRALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQlgnv 85
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1761178521 393 -----YQ--ENEM-KLHRKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEKK 463
Cdd:COG1579 86 rnnkeYEalQKEIeSLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
336-427 |
1.02e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 336 ERNQVYTQLSE-VDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKVITELYQENEMKLHR--KLTVEEnyrl 412
Cdd:PRK12704 79 ERRNELQKLEKrLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERisGLTAEE---- 154
|
90
....*....|....*
gi 1761178521 413 EKEEKLSKVDEKISH 427
Cdd:PRK12704 155 AKEILLEKVEEEARH 169
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
325-448 |
2.17e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 41.16 E-value: 2.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 325 KLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQASLQSEKTEFESESQKLQQKLKV-ITELYQENEMKLhRK 403
Cdd:smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEkLKKLLQEIMIKV-KK 226
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1761178521 404 LTveenyrlEKEEKLSKVDEKISHATEELETCRQRAKDLEEELER 448
Cdd:smart00787 227 LE-------ELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
73-460 |
2.39e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 73 REKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKE--------ASFEKESTEAQSLEFVEGSQISEATYENLEQSK 144
Cdd:COG4717 119 EKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEElreleeelEELEAELAELQEELEELLEQLSLATEEELQDLA 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 145 SKLEDEILLLEEKLEEERAKHSEQDELMADISKRIQSLEDESksLKSQVAEAKTTFRIF-------------EINEERLK 211
Cdd:COG4717 199 EELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAA--LEERLKEARLLLLIAaallallglggslLSLILTIA 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 212 GAIKDALNENSQLQESQKQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETLVTSLL-KMKDWAAVLGEA 290
Cdd:COG4717 277 GVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLdRIEELQELLREA 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 291 DDGNLDLDMKSGLENTAALDNQPK-GALKKLIYAAKLNASLKALEGERNQVYTQLSE---------VDQVKEDLTEHIKS 360
Cdd:COG4717 357 EELEEELQLEELEQEIAALLAEAGvEDEEELRAALEQAEEYQELKEELEELEEQLEEllgeleellEALDEEELEEELEE 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 361 LESKQASLQSEKTEFESESQKLQQKLKvitelyqenemklhrkltveenyRLEKEEKLSKVDEKISHATEELETCRQR-- 438
Cdd:COG4717 437 LEEELEELEEELEELREELAELEAELE-----------------------QLEEDGELAELLQELEELKAELRELAEEwa 493
|
410 420
....*....|....*....|....*..
gi 1761178521 439 -----AKDLEEELERTIHSYQGQVISH 460
Cdd:COG4717 494 alklaLELLEEAREEYREERLPPVLER 520
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
82-442 |
3.37e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.93 E-value: 3.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 82 SALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEILLLEEKLEEE 161
Cdd:pfam01576 92 QQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEE 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 162 RAK-------HSEQDELMADISKRIQ--------------SLEDESKSLKSQVAEAKTtfRIFEI------NEERLKGAI 214
Cdd:pfam01576 172 EEKakslsklKNKHEAMISDLEERLKkeekgrqelekakrKLEGESTDLQEQIAELQA--QIAELraqlakKEEELQAAL 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 215 KDALNENSQLQESQKQLLQETEMMKEQVNDLDKQKVAleesRAQAEQALSEKESQIETLVTSLLKMKDWAAVLGEaddgn 294
Cdd:pfam01576 250 ARLEEETAQKNNALKKIRELEAQISELQEDLESERAA----RNKAEKQRRDLGEELEALKTELEDTLDTTAAQQE----- 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 295 ldldMKSGLEntaaldnQPKGALKkliyaaklnaslKALEGERNQVYTQLSEV----DQVKEDLTEHIKSLESKQASLQS 370
Cdd:pfam01576 321 ----LRSKRE-------QEVTELK------------KALEEETRSHEAQLQEMrqkhTQALEELTEQLEQAKRNKANLEK 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 371 EKTEFESESQKLQQKLKVITELYQENEMK----------LHRKLTVEENYRLEKEEKLSKVD---EKISHATEELET-CR 436
Cdd:pfam01576 378 AKQALESENAELQAELRTLQQAKQDSEHKrkklegqlqeLQARLSESERQRAELAEKLSKLQselESVSSLLNEAEGkNI 457
|
....*.
gi 1761178521 437 QRAKDL 442
Cdd:pfam01576 458 KLSKDV 463
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
75-273 |
4.21e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.20 E-value: 4.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 75 KKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQslefvegsqiSEATYENLEQSKskledeilll 154
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAE----------IDKLQAEIAEAE---------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 155 eekleeerakhSEQDELMADISKRIQSL--EDESKSLKSQVAEAK--TTF--RIFEINeeRLKGAIKDALNEnsqLQESQ 228
Cdd:COG3883 79 -----------AEIEERREELGERARALyrSGGSVSYLDVLLGSEsfSDFldRLSALS--KIADADADLLEE---LKADK 142
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1761178521 229 KQLLQETEMMKEQVNDLDKQKVALEESRAQAEQALSEKESQIETL 273
Cdd:COG3883 143 AELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQL 187
|
|
| CCCAP |
pfam15964 |
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ... |
98-484 |
5.96e-03 |
|
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.
Pssm-ID: 435040 [Multi-domain] Cd Length: 703 Bit Score: 40.27 E-value: 5.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 98 VQKEYEGLESSLkeASFEKESTEAQSLEFVEGSQISEATYENLEQSKSKLEDEILLLEEKLEEERAKHSEQDELMADISK 177
Cdd:pfam15964 305 LTKERDDLMSAL--VSVRSSLAEAQQRESSAYEQVKQAVQMTEEANFEKTKALIQCEQLKSELERQKERLEKELASQQEK 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 178 RIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAI----KDALNENSQLQESQKQL-LQETEM------MKEQVNDLD 246
Cdd:pfam15964 383 RAQEKEALRKEMKKEREELGATMLALSQNVAQLEAQVekvtREKNSLVSQLEEAQKQLaSQEMDVtkvcgeMRYQLNQTK 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 247 KQKVALE----ESRAQAEQALSEKESQIETLVTSL----LKMKDWAAVLGEADDGNLDL-DMKSGLENTAALDNQPKGAL 317
Cdd:pfam15964 463 MKKDEAEkehrEYRTKTGRQLEIKDQEIEKLGLELseskQRLEQAQQDAARAREECLKLtELLGESEHQLHLTRLEKESI 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 318 KKLIYAAKLNASLKALEGERnqvytQLSEVDQVKEdlTEHIKSLESKQASLQSEKT---EFESESQKLQQKLKVITELYQ 394
Cdd:pfam15964 543 QQSFSNEAKAQALQAQQREQ-----ELTQKMQQME--AQHDKTVNEQYSLLTSQNTfiaKLKEECCTLAKKLEEITQKSR 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 395 eNEMKlhrKLTVEENYRLEKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHEKKAHDNWLAARTL 474
Cdd:pfam15964 616 -SEVE---QLSQEKEYLQDRLEKLQKRNEELEEQCVQHGRMHERMKQRLRQLDKHCQATAQQLVQLLSKQNQLFKERQNL 691
|
410
....*....|
gi 1761178521 475 ERNLNDLRKE 484
Cdd:pfam15964 692 TEEVQSLRSQ 701
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
74-444 |
6.20e-03 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 40.31 E-value: 6.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 74 EKKLALELSALIEEKCKLLDKVSIVQKEYEGLESSLKEASFEKESTEAQSLEFVEGSQISEATYENL-----EQSKSKLE 148
Cdd:pfam15818 66 KKQLQMKMCALEEEKGKYQLATEIKEKEIEGLKETLKALQVSKYSLQKKVSEMEQKLQLHLLAKEDHhkqlnEIEKYYAT 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 149 DEILLLEEKLEEERAKHSEQDEL-----MADISKR----IQSLEDESKSLKSQVAEAKTTFRiFEINEERLKGAIKDaln 219
Cdd:pfam15818 146 ITGQFGLVKENHGKLEQNVQEAIqlnkrLSALNKKqeseICSLKKELKKVTSDLIKSKVTCQ-YKMGEENINLTIKE--- 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 220 enSQLQESQKQLLQETEMMK---EQVNDLDKQKVALEESrAQAEQALSEKESQIETLVTSLLKmkdwaaVLGEaddGNLD 296
Cdd:pfam15818 222 --QKFQELQERLNMELELNKkinEEITHIQEEKQDIIIS-FQHMQQLLQQQTQANTEMEAELK------ALKE---NNQT 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 297 LDMKSGLENTAALDNQPKgalkkliYAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTE----HIKSLESKQASLQSEK 372
Cdd:pfam15818 290 LERDNELQREKVKENEEK-------FLNLQNEHEKALGTWKKHVEELNGEINEIKNELSSlketHIKLQEHYNKLCNQKK 362
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1761178521 373 TEfesESQKLQQKLKVITELYQENEMKLHRKLTVEENYRLEKEEKLSKvdeKISHATEELETCRQRAKDLEE 444
Cdd:pfam15818 363 FE---EDKKFQNVPEVNNENSEMSTEKSENLIIQKYNSEQEIREENTK---SFCSDTEYRETEKKKGPPVEE 428
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
352-463 |
8.13e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.76 E-value: 8.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 352 EDLTEHIksLESKQASLQSEKTEFESESQKLQQKLKviTELYQENEMKLhRKLTVEENYRLEKEEKLSKVDEKISHATEE 431
Cdd:PRK12704 37 EEEAKRI--LEEAKKEAEAIKKEALLEAKEEIHKLR--NEFEKELRERR-NELQKLEKRLLQKEENLDRKLELLEKREEE 111
|
90 100 110
....*....|....*....|....*....|..
gi 1761178521 432 LETCRQRAKDLEEELERTIHSYQGQVISHEKK 463
Cdd:PRK12704 112 LEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
166-408 |
8.15e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 39.61 E-value: 8.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 166 SEQDELMADiskRIQSLEDESKSLKSQVAEAKTTFRIFEINEERLKGAIKDALNEN----SQLQESQKQLLQETEMMKEQ 241
Cdd:PHA02562 166 SEMDKLNKD---KIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKqnkyDELVEEAKTIKAEIEELTDE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 242 VNDLDKQKVALEESRAQAEQALSEKESQIETLvTSLLKM--------------KDWAAVLGEADDGNLDLDMKSGLENTA 307
Cdd:PHA02562 243 LLNLVMDIEDPSAALNKLNTAAAKIKSKIEQF-QKVIKMyekggvcptctqqiSEGPDRITKIKDKLKELQHSLEKLDTA 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 308 ALDNQpkgalKKLIYAAKLNASLKALEGERNQVYTQLS-EVDQvkedltehIKSLESKQASLQSEKTEFESESQKLQQKL 386
Cdd:PHA02562 322 IDELE-----EIMDEFNEQSKKLLELKNKISTNKQSLItLVDK--------AKKVKAAIEELQAEFVDNAEELAKLQDEL 388
|
250 260
....*....|....*....|..
gi 1761178521 387 KVITELYQENEMKLHRKLTVEE 408
Cdd:PHA02562 389 DKIVKTKSELVKEKYHRGIVTD 410
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
210-456 |
8.82e-03 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 39.02 E-value: 8.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 210 LKGAIKDALNENSQLQESQKQ---LLQETEMMKEQVNDLDKQKVALEesrAQAEQALSEKESQIETlVTSLLKmkdwaaV 286
Cdd:pfam15905 61 LKKKSQKNLKESKDQKELEKEiraLVQERGEQDKRLQALEEELEKVE---AKLNAAVREKTSLSAS-VASLEK------Q 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 287 LGEADDGNLDLDMKSGLENTAALDNQPKGALKKLiyAAKLNASLKALEGERNQVYTQLSEVDQVKEDLTEHIKSLESKQA 366
Cdd:pfam15905 131 LLELTRVNELLKAKFSEDGTQKKMSSLSMELMKL--RNKLEAKMKEVMAKQEGMEGKLQVTQKNLEHSKGKVAQLEEKLV 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 367 SLQSEKTEFESESQKLqqkLKVITELYQENE--MKLHRKLTVEENYRLEKEEKL----SKVDEKISHATEELETCRQRAK 440
Cdd:pfam15905 209 STEKEKIEEKSETEKL---LEYITELSCVSEqvEKYKLDIAQLEELLKEKNDEIeslkQSLEEKEQELSKQIKDLNEKCK 285
|
250
....*....|....*.
gi 1761178521 441 DLEEELERTIHSYQGQ 456
Cdd:pfam15905 286 LLESEKEELLREYEEK 301
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
345-448 |
9.12e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 39.53 E-value: 9.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761178521 345 SEVDQVKEDLTE----HIkslESKQASLQSEKT-EFESESQKLQQKLKVITELYQENEMKLHRKLTVEENyRLEK----- 414
Cdd:PRK05771 16 SYKDEVLEALHElgvvHI---EDLKEELSNERLrKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVK-SLEElikdv 91
|
90 100 110
....*....|....*....|....*....|....
gi 1761178521 415 EEKLSKVDEKISHATEELETCRQRAKDLEEELER 448
Cdd:PRK05771 92 EEELEKIEKEIKELEEEISELENEIKELEQEIER 125
|
|
| |
