|
Name |
Accession |
Description |
Interval |
E-value |
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
479-995 |
6.08e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 63.89 E-value: 6.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 479 AETKNLMKNEIESLRQTFSD-------AKIRIRELEEDANIFRKDLEKADDDRLKLDAALKEANEEIDSKAAEI------ 545
Cdd:TIGR04523 67 EEKINNSNNKIKILEQQIKDlndklkkNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIdkflte 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 546 -------VASLNTANR--------LQNEKDQMNHAISYMEERMQVYRN--TIQDHNLVVTDEKIENWRKTMSDprymIMH 608
Cdd:TIGR04523 147 ikkkekeLEKLNNKYNdlkkqkeeLENELNLLEKEKLNIQKNIDKIKNklLKLELLLSNLKKKIQKNKSLESQ----ISE 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 609 SKEVQTTLT------SQQLSEHESDFLSTQQTLHDLKKEYSAKNTTLVDKFKEVEEIllakTELVDALTKQLENIrKDQT 682
Cdd:TIGR04523 223 LKKQNNQLKdniekkQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQN----NKKIKELEKQLNQL-KSEI 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 683 RELSlKQSERDQYKKSLEEMTFIAEKVPILEAEILQlskdKNEITARLKHDQEYFEDELAKLLNDSMNIKKErddylteh 762
Cdd:TIGR04523 298 SDLN-NQKEQDWNKELKSELKNQEKKLEEIQNQISQ----NNKIISQLNEQISQLKKELTNSESENSEKQRE-------- 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 763 IRANESMIERLKLEISGLKKDLENQKmqahLQKSELEKKLLSSIDHVSQLQSRV-----NHSQRDVECQAIPRQINKYVG 837
Cdd:TIGR04523 365 LEEKQNEIEKLKKENQSYKQEIKNLE----SQINDLESKIQNQEKLNQQKDEQIkklqqEKELLEKEIERLKETIIKNNS 440
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 838 CKPNVKNKETIIEKgaLFDENEERLRICKAELETTRRQVTVLQQKLvsiiqQQSSQKIKKRiavVEDSNKNTVHTEDLES 917
Cdd:TIGR04523 441 EIKDLTNQDSVKEL--IIKNLDNTRESLETQLKVLSRSINKIKQNL-----EQKQKELKSK---EKELKKLNEEKKELEE 510
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1767287842 918 KMKEVELKNTELMERIDSLEAERfvasSIEKSRIQKLVNEFDNLKQKLDNDmsNYSKEKQWLQWRISNLEKDNSELQK 995
Cdd:TIGR04523 511 KVKDLTKKISSLKEKIEKLESEK----KEKESKISDLEDELNKDDFELKKE--NLEKEIDEKNKEIEELKQTQKSLKK 582
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
486-815 |
1.07e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 1.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 486 KNEIESLRQTFSDAKIRIRELEEDANIFRKDLEKADDDRLKLDAALKEANEEIDSKAAEIVASLNTANRLQNEKDQMNHA 565
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 566 ISYMEERMQVYRNTIQDHN--LVVTDEKIENWRKTMSDPRYMIMHSKEVQTTLtSQQLSEHESDFLSTQQTLHDLKKEYS 643
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEeeLAEAEAEIEELEAQIEQLKEELKALREALDEL-RAELTLLNEEAANLRERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 644 AKNTTLVDKFKEVEEIllakTELVDALTKQLENIRKDQTRELSLKQSERDQYKKSLEEMTFIAEKVPILEAEILQLSKDK 723
Cdd:TIGR02168 835 ATERRLEDLEEQIEEL----SEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 724 NEITARLKHDQEYFED---ELAKLLNDSMNIKkerdDYLTEHIRANESMIERLKLEIsglkkDLENQKMQAHLqkSELEK 800
Cdd:TIGR02168 911 SELRRELEELREKLAQlelRLEGLEVRIDNLQ----ERLSEEYSLTLEEAEALENKI-----EDDEEEARRRL--KRLEN 979
|
330 340
....*....|....*....|..
gi 1767287842 801 KL-------LSSIDHVSQLQSR 815
Cdd:TIGR02168 980 KIkelgpvnLAAIEEYEELKER 1001
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
531-1141 |
4.24e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.12 E-value: 4.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 531 LKEANEEIDSKAAEIVASLNTANRLQNE-KDQMNHAISYMEERMQvyrNTIQDHNLVVT--DEKIENWR---KTMSDPRY 604
Cdd:pfam15921 226 LRELDTEISYLKGRIFPVEDQLEALKSEsQNKIELLLQQHQDRIE---QLISEHEVEITglTEKASSARsqaNSIQSQLE 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 605 MIMHSKEVQTTLTSQQLSEHESDFLSTQQTLHDLKKEYSaknttlvDKFKEVE-EILLAKTELVDALTK----------- 672
Cdd:pfam15921 303 IIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYE-------DKIEELEkQLVLANSELTEARTErdqfsqesgnl 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 673 --QLENIRKD---QTRELSLkqsERDQYKKSLEEMTFIAEKVPILEAEILQLSKDKNEITARLK----HDQEYFEDELAK 743
Cdd:pfam15921 376 ddQLQKLLADlhkREKELSL---EKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKamksECQGQMERQMAA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 744 LlnDSMNIKKERDDYLTEHIRANESMIERLKLEISGLKKDLENQK-----MQAHLQksELEKKLLSSIDHVSQLQSRVnh 818
Cdd:pfam15921 453 I--QGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSErtvsdLTASLQ--EKERAIEATNAEITKLRSRV-- 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 819 sqrDVECQAIPRQINKyvgcKPNVKNKETIIEKGAL-FDENEERLRICKAELETTRrQVTVLQQKLVSIIQQQSSQKIK- 896
Cdd:pfam15921 527 ---DLKLQELQHLKNE----GDHLRNVQTECEALKLqMAEKDKVIEILRQQIENMT-QLVGQHGRTAGAMQVEKAQLEKe 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 897 --------KRIAVVEDsnKNTVHTEDLESKMKEVELKNTELMeridSLEAERFVASSIEKSRIQKLVNEFDNLKQKLDND 968
Cdd:pfam15921 599 indrrlelQEFKILKD--KKDAKIRELEARVSDLELEKVKLV----NAGSERLRAVKDIKQERDQLLNEVKTSRNELNSL 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 969 MSNYSKEKQWLQWRISNLEKDNSELQKQIQpSSEKSLESlNKGTLRktmsepdfgddmSTEGDGASTNESADFMVESVTA 1048
Cdd:pfam15921 673 SEDYEVLKRNFRNKSEEMETTTNKLKMQLK-SAQSELEQ-TRNTLK------------SMEGSDGHAMKVAMGMQKQITA 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 1049 PVLSLKSPQPFSQLadvlnlvrsdLEQVLTEI-EEPEAAKQEEPQMSLEKSTNIlndvlnewAEDERKTLERQLKRSQEE 1127
Cdd:pfam15921 739 KRGQIDALQSKIQF----------LEEAMTNAnKEKHFLKEEKNKLSQELSTVA--------TEKNKMAGELEVLRSQER 800
|
650
....*....|....
gi 1767287842 1128 RSLLKNKNVQLSKD 1141
Cdd:pfam15921 801 RLKEKVANMEVALD 814
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
479-1003 |
5.08e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.64 E-value: 5.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 479 AETKNLMKNEIESlRQTFSDAKIRIRELEEDANIFRKDLEKADDDRLKLDAALKEANEEIDSKAAEIVASLNTANRLQNE 558
Cdd:TIGR04523 54 KELKNLDKNLNKD-EEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQ 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 559 KDQMNHAISYMEERMqvyrnTIQDHNLVVTDEKIENWRKTMSDprymimhSKEVQTTLtsqqlsehESDFLSTQQTLHDL 638
Cdd:TIGR04523 133 KKENKKNIDKFLTEI-----KKKEKELEKLNNKYNDLKKQKEE-------LENELNLL--------EKEKLNIQKNIDKI 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 639 KKEYSAKNTTLVDKFKEVEEILLAKTELVDaltkqLENIRKDQTRELSLKQSERDQYKKSLEEMtfiaekvpilEAEILQ 718
Cdd:TIGR04523 193 KNKLLKLELLLSNLKKKIQKNKSLESQISE-----LKKQNNQLKDNIEKKQQEINEKTTEISNT----------QTQLNQ 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 719 LSKDKNEITARLKHDQEYFEDELAKLLNDSMNIKKERDDYLTEHIRANESMIERLKLEIsglkKDLENQKMQAHLQKSEL 798
Cdd:TIGR04523 258 LKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSEL----KNQEKKLEEIQNQISQN 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 799 EKKLLSSIDHVSQLQSRVNHSQRdvECQAIPRQINKyvgckpNVKNKETIIEKGALFDENEERLRICKAELETTRRQVTV 878
Cdd:TIGR04523 334 NKIISQLNEQISQLKKELTNSES--ENSEKQRELEE------KQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEK 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 879 LQQKLVSIIQ--QQSSQKIKKRIAVV-EDSNKNTVHTEDLESKMKEVELKNTELMERIDSLEAErfvASSIEKSrIQKLV 955
Cdd:TIGR04523 406 LNQQKDEQIKklQQEKELLEKEIERLkETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQ---LKVLSRS-INKIK 481
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1767287842 956 NEFDNLKQKLDNDMSNYSKEKQwlqwRISNLEKDNSELQKQIQPSSEK 1003
Cdd:TIGR04523 482 QNLEQKQKELKSKEKELKKLNE----EKKELEEKVKDLTKKISSLKEK 525
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
489-998 |
9.69e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.49 E-value: 9.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 489 IESLRQTFSDAKIRIRELEEDANIFRKDLEKADDDRLKLDAALKEANEEIDSKAAEIVASLNTANRLQNEKDQMNHAISY 568
Cdd:TIGR04523 206 LKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 569 MEERMQVYRNTIQDHNlvvtDEKIENWRKTMSDprymIMHSKEVQTTLTSQQLSEHESDFLSTQQTLHDLKKEYSAKNTT 648
Cdd:TIGR04523 286 LEKQLNQLKSEISDLN----NQKEQDWNKELKS----ELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 649 LVDKFKEVEEillaktelvdaLTKQLENIRKdqtrelslkqsERDQYKKSLEEMTfiaEKVPILEAEILQLSKDKNEITA 728
Cdd:TIGR04523 358 NSEKQRELEE-----------KQNEIEKLKK-----------ENQSYKQEIKNLE---SQINDLESKIQNQEKLNQQKDE 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 729 RLKHDQ---EYFEDELAKLLNDSMNIKKERDDyLTEHIRANESMIERLKLEISGLKKDLENQKMQAHLQKSELEKKllss 805
Cdd:TIGR04523 413 QIKKLQqekELLEKEIERLKETIIKNNSEIKD-LTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQK---- 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 806 idhVSQLQSRVNhsqrdvecqaiprQINKYVGCKPNVKNK-ETIIEKGALFDENEERLRICKAELETtrrQVTVLQQKLV 884
Cdd:TIGR04523 488 ---QKELKSKEK-------------ELKKLNEEKKELEEKvKDLTKKISSLKEKIEKLESEKKEKES---KISDLEDELN 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 885 SIIQQQSSQKIKKriaVVEDSNKNTvhtEDLESKMKEVELKNTELMERIDSLEAErfvassieKSRIQKLVNEFDNLKQK 964
Cdd:TIGR04523 549 KDDFELKKENLEK---EIDEKNKEI---EELKQTQKSLKKKQEEKQELIDQKEKE--------KKDLIKEIEEKEKKISS 614
|
490 500 510
....*....|....*....|....*....|....
gi 1767287842 965 LDNDMSNYSKEKQWLQWRISNLEKDNSELQKQIQ 998
Cdd:TIGR04523 615 LEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVK 648
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
483-794 |
1.13e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 483 NLMKNEIESLRQTFSDAKIRIRELEEDANIFRKDLEKADDDRLKLDAALKEANEEIDSKAAEIvaslntaNRLQNEKDQM 562
Cdd:COG1196 228 ELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE-------YELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 563 NHAISYMEERMQVYRNTIQDhnlvvTDEKIENWRKtmsdprymimhskevQTTLTSQQLSEHESDFLSTQQTLHDLKKEY 642
Cdd:COG1196 301 EQDIARLEERRRELEERLEE-----LEEELAELEE---------------ELEELEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 643 SAKNTTLVDKFKEVEEILLAKTELVDALTKQLENIRKDQTRELSLKQSERDQykksLEEMTFIAEKVPILEAEILQLSKD 722
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL----LERLERLEEELEELEEALAELEEE 436
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1767287842 723 KNEITARLKHDQEyfedELAKLLNDSMNIKKERDDYLTEHIRANESMIERLKLEISGLKKDLENQKMQAHLQ 794
Cdd:COG1196 437 EEEEEEALEEAAE----EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
627-1167 |
1.09e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 627 DFLSTQQTLHDLKKEYSAKNTTLVDKFKEVEEILLAKTELVDALTKQLENIRKDQTRELSLKqSERDQYKKSLEEMTFIA 706
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELR-EELEKLEKEVKELEELK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 707 EKVPILEAEILQLSKDKNEITARLKHDQEYFED------ELAKLLNDSMNIKKERDDYLT---------EHIRANESMIE 771
Cdd:PRK03918 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEElkkeieELEEKVKELKELKEKAEEYIKlsefyeeylDELREIEKRLS 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 772 RLKLEISGLKKDL-ENQKMQAHLQksELEKKLLSSIDHVSQLQSRVNHSQRDVECQAIPRQINKYVGCKPnvknKETIIE 850
Cdd:PRK03918 318 RLEEEINGIEERIkELEEKEERLE--ELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLT----PEKLEK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 851 KgalFDENEERLRICKAELETTRRQVTVLQQKLVSIIQQQSSQKIKKRIAVV------EDSNKN-----TVHTEDLESKM 919
Cdd:PRK03918 392 E---LEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVcgreltEEHRKElleeyTAELKRIEKEL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 920 KEVELKNTELMERIDSLEAERFVASSIekSRIQKLVNEFDNLKQKLdndmSNYSKEKQWLQWR-ISNLEKDNSELQKQIQ 998
Cdd:PRK03918 469 KEIEEKERKLRKELRELEKVLKKESEL--IKLKELAEQLKELEEKL----KKYNLEELEKKAEeYEKLKEKLIKLKGEIK 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 999 pSSEKSLESLNKGTLRKTMSEPDFGDDMSTEGDGASTNESADFmvESVTAPVLSLKSPQPFSQLADVLNLVRSDLEQVLT 1078
Cdd:PRK03918 543 -SLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGF--ESVEELEERLKELEPFYNEYLELKDAEKELEREEK 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 1079 EIEEPEAakqeepqmSLEKSTNILNDVLNEWAEDERKTLERQLKRSQEERSLLKNKNVQLSKDLQVAMAELnvyKSEKPH 1158
Cdd:PRK03918 620 ELKKLEE--------ELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAEL---EELEKR 688
|
....*....
gi 1767287842 1159 KDDEPKNLE 1167
Cdd:PRK03918 689 REEIKKTLE 697
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
652-1064 |
1.74e-05 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 49.57 E-value: 1.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 652 KFKEVEEILLAKTELVDALTKQLENIRKDQTRELSLKQSERDQYKKSLEEMTFIAEKVPILEAEILQLskdkneitarlk 731
Cdd:COG5185 181 IFGLTLGLLKGISELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIINIEEALKGFQDPESELEDL------------ 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 732 hdqEYFEDELAKLLndsmnikKERDDYLTEHIRANESMIERLKLEISGLKKDLEN--QKMQAHLQKSELEKKLLSSIDHV 809
Cdd:COG5185 249 ---AQTSDKLEKLV-------EQNTDLRLEKLGENAESSKRLNENANNLIKQFENtkEKIAEYTKSIDIKKATESLEEQL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 810 SQLQSRVNHSQ----RDVECQAIPRQINKYV----GCKPNVKNKETIIEKGALFDENEERLRICKAELETTRRQvtvLQQ 881
Cdd:COG5185 319 AAAEAEQELEEskreTETGIQNLTAEIEQGQesltENLEAIKEEIENIVGEVELSKSSEELDSFKDTIESTKES---LDE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 882 KLVSIIQQQSSQKIKKRIAVVEDSNKNTVHTEDLESKMKEVELKNTELMERIDSLEAERFVASSIEKSR-IQKLVNEFDN 960
Cdd:COG5185 396 IPQNQRGYAQEILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREADEESQSRlEEAYDEINRS 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 961 LKQKLDNDMSNYSKEKQWLQWRISNLEKDNSELQKQIQPSSEKSLESLNKGTLRKTMSEPDFGDDMSTEGDGASTNESAD 1040
Cdd:COG5185 476 VRSKKEDLNEELTQIESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAESLKDFMRARGYAHILALENLIPASELIQASN 555
|
410 420
....*....|....*....|....
gi 1767287842 1041 FMVESVTAPVLSLKSPQPFSQLAD 1064
Cdd:COG5185 556 AKTDGQAANLRTAVIDELTQYLST 579
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
618-939 |
2.39e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 618 SQQLSEHESDFLSTQQTLHDLKKEYSAKNTTLVDKFKEVEEIllakTELVDALTKQLENIRKDQTRELSLKQSERDQYKK 697
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL----SRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 698 SLEEMTFIAEKVPILEAEILQLSKDKNEITARLKHDQEYFE------DEL---AKLLNDSMNIKKERDDYLTEHIRANES 768
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKalrealDELraeLTLLNEEAANLRERLESLERRIAATER 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 769 MIERLKLEISGLKKDLENQKmQAHLQKSELEKKLLSSIDHVSQLQSRVN---HSQRDVECQAIprqinkyvgckpnvknk 845
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLA-AEIEELEELIEELESELEALLNERASLEealALLRSELEELS----------------- 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 846 ETIIEKGALFDENEERLRICKAELETTRRQVTVLQQKLVSIIQQQSSQKIkkriavvedsnkntVHTEDLESKMKEVELK 925
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS--------------LTLEEAEALENKIEDD 966
|
330
....*....|....
gi 1767287842 926 NTELMERIDSLEAE 939
Cdd:TIGR02168 967 EEEARRRLKRLENK 980
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
477-800 |
3.62e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.58 E-value: 3.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 477 ACAETKNLMKNEIESLRQTFSDAKIRIRELEEDANIFRKDLEKADDDRLKLDAALKEANEEIDSKAAEIVA-------SL 549
Cdd:pfam15921 451 AAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKlrsrvdlKL 530
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 550 NTANRLQNEKDQMNHAISYMEE-RMQVyrnTIQDHNLVVTDEKIENWRKTMSDprymimHSKEVQTTLTSQ-QLSEHESD 627
Cdd:pfam15921 531 QELQHLKNEGDHLRNVQTECEAlKLQM---AEKDKVIEILRQQIENMTQLVGQ------HGRTAGAMQVEKaQLEKEIND 601
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 628 FLSTQQTLHDLKKEYSAKNTTLVDKFKEVEeilLAKTELVDALTKQLENIRkdqtrelSLKQsERDQY----KKSLEEMT 703
Cdd:pfam15921 602 RRLELQEFKILKDKKDAKIRELEARVSDLE---LEKVKLVNAGSERLRAVK-------DIKQ-ERDQLlnevKTSRNELN 670
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 704 FIAEKVPILEAEILQLSKDKNEITARLKHDQEYFEDELAKLLNdSMNIKKERDDY-------LTEHIRANESMIERLKLE 776
Cdd:pfam15921 671 SLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRN-TLKSMEGSDGHamkvamgMQKQITAKRGQIDALQSK 749
|
330 340
....*....|....*....|....
gi 1767287842 777 ISGLKKDLENQKMQAHLQKSELEK 800
Cdd:pfam15921 750 IQFLEEAMTNANKEKHFLKEEKNK 773
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
483-731 |
5.16e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 5.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 483 NLMKNEIESLRQTFSDAKIRIRELEEDANIFRKDLEKADDDRLKLDAALKEANEEIDSKAAEI------VASLNTA-NRL 555
Cdd:TIGR02168 729 SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIeqlkeeLKALREAlDEL 808
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 556 QNEKDQMNHAISYMEERMQVYRNTIQD--HNLVVTDEKIENWRKTMSDPRYMIMHSKEVQTTLTSqQLSEHESDFLSTQQ 633
Cdd:TIGR02168 809 RAELTLLNEEAANLRERLESLERRIAAteRRLEDLEEQIEELSEDIESLAAEIEELEELIEELES-ELEALLNERASLEE 887
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 634 TLHDLKKEYSAKNTTLvdkfKEVEEILLAKTELVDALTKQLENIRKDQT----RELSLKQSERDQYKKSLEEmtfIAEKV 709
Cdd:TIGR02168 888 ALALLRSELEELSEEL----RELESKRSELRRELEELREKLAQLELRLEglevRIDNLQERLSEEYSLTLEE---AEALE 960
|
250 260
....*....|....*....|..
gi 1767287842 710 PILEAEILQLSKDKNEITARLK 731
Cdd:TIGR02168 961 NKIEDDEEEARRRLKRLENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
476-747 |
6.18e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 6.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 476 EACAETKNLMKNEIESLRQTFSDAKIRIRELEEDANIFRKDLEKADDDRLKLDAALKEANEEIDSKAAEIVASLNTANRL 555
Cdd:COG1196 256 EELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEEL 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 556 QNEKDQMNHAISYMEERMQVYRNTIQDHN--LVVTDEKIENWRKTMSdprymimhSKEVQTTLTSQQLSEHESDFLSTQQ 633
Cdd:COG1196 336 EEELEELEEELEEAEEELEEAEAELAEAEeaLLEAEAELAEAEEELE--------ELAEELLEALRAAAELAAQLEELEE 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 634 TLHDLKKEYSAKNTTLvdkfKEVEEILLAKTELVDALTKQLENIRKDQTRELSLKQSERDQYKKSLEEMTFIAEKVPILE 713
Cdd:COG1196 408 AEEALLERLERLEEEL----EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELL 483
|
250 260 270
....*....|....*....|....*....|....
gi 1767287842 714 AEILQLSKDKNEITARLKHDQEYFEDELAKLLND 747
Cdd:COG1196 484 EELAEAAARLLLLLEAEADYEGFLEGVKAALLLA 517
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
476-798 |
7.34e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 7.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 476 EACAETKNLMKNEIESLRQTFSDAKIRIRELEedanifrKDLEKADDDRLKLDAALKEANEEIDSKAAEIVAslntanrL 555
Cdd:TIGR02169 691 SSLQSELRRIENRLDELSQELSDASRKIGEIE-------KEIEQLEQEEEKLKERLEELEEDLSSLEQEIEN-------V 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 556 QNEKDQMNHAISYMEermqvyrntiqdhnlvvtdEKIENWRKTMSDPRYMIMHSkevqttltsqqlsehesdflstqqtl 635
Cdd:TIGR02169 757 KSELKELEARIEELE-------------------EDLHKLEEALNDLEARLSHS-------------------------- 791
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 636 hdlkkeysaknttlvdKFKEVEEILLAKTELVDALTKQLENIRKDQTRELSLKQSERDQYKKSLEEMTFIAEKVPILEAE 715
Cdd:TIGR02169 792 ----------------RIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKE 855
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 716 ILQLSKDKNEITARLKhDQEYFEDELAKLLNDsmnIKKERDDyLTEHIRANESMIERLKLEISGLKKDLENQKMQAHLQK 795
Cdd:TIGR02169 856 IENLNGKKEELEEELE-ELEAALRDLESRLGD---LKKERDE-LEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALE 930
|
...
gi 1767287842 796 SEL 798
Cdd:TIGR02169 931 EEL 933
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
699-990 |
1.02e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.93 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 699 LEEM-TFIAEKVPILEAEILQLSKDKNEITARLKhDQEYFEDELAKLLNDSMNIKKERDDYLTEHIRANESMIERLKLEI 777
Cdd:PHA02562 165 LSEMdKLNKDKIRELNQQIQTLDMKIDHIQQQIK-TYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDEL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 778 SGLKKDLENQkmQAHLQKSELEKKLLSSidHVSQLQSRVNHSQRDVECQAiprqinkyvgCKPNVKNKETIIEKGAlfde 857
Cdd:PHA02562 244 LNLVMDIEDP--SAALNKLNTAAAKIKS--KIEQFQKVIKMYEKGGVCPT----------CTQQISEGPDRITKIK---- 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 858 neERLRICKAELETTRRQVTVLQQKLVSIIQQQSSQK-IKKRIAvvedSNKNTVHTEDLESKMKEVElkntelmerIDSL 936
Cdd:PHA02562 306 --DKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLeLKNKIS----TNKQSLITLVDKAKKVKAA---------IEEL 370
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1767287842 937 EAERfvasSIEKSRIQKLVNEFDnlkqKLDNDMSNYSKEKQWLQWrISNLEKDN 990
Cdd:PHA02562 371 QAEF----VDNAEELAKLQDELD----KIVKTKSELVKEKYHRGI-VTDLLKDS 415
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
619-940 |
1.40e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 619 QQLSEHESDFLSTQQTLHDLKKEYSAKN---TTLVDKFKEVEEILLAKTELVDALTKQLENIRKDQTR---ELSLKQSER 692
Cdd:TIGR02169 695 SELRRIENRLDELSQELSDASRKIGEIEkeiEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKEleaRIEELEEDL 774
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 693 DQYKKSLEEM--TFIAEKVPILEAEILQLSKDKNEITARLKH-DQEYFEDELAK-LLNDSMNIKKERDDYLTEHIRANES 768
Cdd:TIGR02169 775 HKLEEALNDLeaRLSHSRIPEIQAELSKLEEEVSRIEARLREiEQKLNRLTLEKeYLEKEIQELQEQRIDLKEQIKSIEK 854
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 769 MIERLKLEISGLK---KDLENQKMQAHLQKSELEKKLLSSIDHVSQLQSRVNHSQRDVEcqaiprqinkyvgcKPNVKNK 845
Cdd:TIGR02169 855 EIENLNGKKEELEeelEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIE--------------KKRKRLS 920
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 846 ETIIEKGALFDENEERLRICKAELEttrrqvtVLQQKLVSIIQQQSSQKIKKRIAVVEDSN-------KNTVHT-EDLES 917
Cdd:TIGR02169 921 ELKAKLEALEEELSEIEDPKGEDEE-------IPEEELSLEDVQAELQRVEEEIRALEPVNmlaiqeyEEVLKRlDELKE 993
|
330 340
....*....|....*....|...
gi 1767287842 918 KMKEVELKNTELMERIDSLEAER 940
Cdd:TIGR02169 994 KRAKLEEERKAILERIEEYEKKK 1016
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
479-745 |
1.76e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 479 AETKNLMKNEIESLRQTFSDAKIRIRELEEDANIFRKDLEKADDDRLKLDAALKEANEEIDSKAAEIVASLNTANRLQNE 558
Cdd:COG1196 245 EAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 559 KDQMNHAISYMEERMQVYRNTIQDhnlvvTDEKIEnwrktmsdprymimhSKEVQTTLTSQQLSEHESDFLSTQQTLHDL 638
Cdd:COG1196 325 LAELEEELEELEEELEELEEELEE-----AEEELE---------------EAEAELAEAEEALLEAEAELAEAEEELEEL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 639 KKEYSAKNTTLVDKFKEVEEILLAKTELVDALTKQLENIRKDQTRELSLKQSERDQYKKSLEEMTFIAEkvpiLEAEILQ 718
Cdd:COG1196 385 AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE----LEEEEEA 460
|
250 260
....*....|....*....|....*..
gi 1767287842 719 LSKDKNEITARLKHDQEYFEDELAKLL 745
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELA 487
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
406-1008 |
2.94e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 45.58 E-value: 2.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 406 RNKAAQLEIVaKDQLVKIQQLEEYLQKVMEPVPESHITVTE-NAVFVEDVSHTNREADPHNDPIVITDCNFEACAETKNL 484
Cdd:pfam10174 49 KEEAARISVL-KEQYRVTQEENQHLQLTIQALQDELRAQRDlNQLLQQDFTTSPVDGEDKFSTPELTEENFRRLQSEHER 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 485 MKNEIESLRQTFSDAKIRIreleedaNIFRKDLEKADDDRLKLDAAL------KEANEEIDSKAAEIVASLNTANRLQNE 558
Cdd:pfam10174 128 QAKELFLLRKTLEEMELRI-------ETQKQTLGARDESIKKLLEMLqskglpKKSGEEDWERTRRIAEAEMQLGHLEVL 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 559 KDQMNHAISYMEERMQvYRNTIQDHN---------LVVTDEKI---ENWRKTMSDPRYMIMHSKEVQTTLTSQQLSEHE- 625
Cdd:pfam10174 201 LDQKEKENIHLREELH-RRNQLQPDPaktkalqtvIEMKDTKIsslERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEv 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 626 ----SDFLSTQqtLHDLKKEYSAKNT----------TLVDKFKE-------VEEILLAK--------TElVDALTKQLE- 675
Cdd:pfam10174 280 ykshSKFMKNK--IDQLKQELSKKESellalqtkleTLTNQNSDckqhievLKESLTAKeqraailqTE-VDALRLRLEe 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 676 -----NIRKDQTRELSLKQSERDQYKKSLEEMTFIAE-KVPILEAEILQLS---KDKNEITARLKhdqeyfeDELAKLLN 746
Cdd:pfam10174 357 kesflNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKErKINVLQKKIENLQeqlRDKDKQLAGLK-------ERVKSLQT 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 747 DSMNikkeRDDYLT---EHIRANESMIERLKL-----------EISGLKKDLENQKMQA---HLQKSELEKKLLSSIDHV 809
Cdd:pfam10174 430 DSSN----TDTALTtleEALSEKERIIERLKEqreredrerleELESLKKENKDLKEKVsalQPELTEKESSLIDLKEHA 505
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 810 SQLQSR------------VNHSQRDVECQAIPRQINKYVGCKPNVKNKETIIEKGALFDENEERLRickaeLETTRRQVT 877
Cdd:pfam10174 506 SSLASSglkkdsklksleIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEINDRIRLLEQEVARYK-----EESGKAQAE 580
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 878 VlqQKLVSIIQQQSSQKI--KKRIAVVEDSNKNTVHTEDLES---KMKEVELKNTELMERIDSLEAERFVASSIEKSRIQ 952
Cdd:pfam10174 581 V--ERLLGILREVENEKNdkDKKIAELESLTLRQMKEQNKKVaniKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQLE 658
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 1767287842 953 KLVNEFDNLKQKLDNDMSNYSKEKQWLQWRISNLEKDNSELQKQIQPSSEKSLESL 1008
Cdd:pfam10174 659 ELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEAL 714
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
407-831 |
1.06e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 407 NKAAQLEIVAKDQLVKIQQLEEYLQKVM----EPVPESHITVTENAVFVEDVS----HTNREADPHNDPIVITDCNFEAC 478
Cdd:pfam05483 208 NARLEMHFKLKEDHEKIQHLEEEYKKEIndkeKQVSLLLIQITEKENKMKDLTflleESRDKANQLEEKTKLQDENLKEL 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 479 AETKNLMKNEIESLRQTFSDAKIRIRELEEDANIFRKDLEKADDDRlklDAALKEANE----------EIDSKAAEIVAS 548
Cdd:pfam05483 288 IEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEK---EAQMEELNKakaahsfvvtEFEATTCSLEEL 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 549 LNT-ANRLQNEKDQMNHAISYMEERMQVYRNTIQDHNlvVTDEKIENWRKTMSDPRYMIMHSKEVQTTLTSQQLSEHESD 627
Cdd:pfam05483 365 LRTeQQRLEKNEDQLKIITMELQKKSSELEEMTKFKN--NKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELI 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 628 FL--STQQTLHDLKKEYSAKNTTLVDKFKEVEEI-------------LLAKTELVDALTKQLENIRKDQTRELSLKQSER 692
Cdd:pfam05483 443 FLlqAREKEIHDLEIQLTAIKTSEEHYLKEVEDLktelekeklknieLTAHCDKLLLENKELTQEASDMTLELKKHQEDI 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 693 DQYKKSLEEMTFIAEKVPILEAEIL--------QLSKDKNEITARLKHDQEYFEDELAKLLN--DSMNIKKERDDYLTEH 762
Cdd:pfam05483 523 INCKKQEERMLKQIENLEEKEMNLRdelesvreEFIQKGDEVKCKLDKSEENARSIEYEVLKkeKQMKILENKCNNLKKQ 602
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1767287842 763 IRANESMIERLKLEISGLKKDLENQKMQAHLQKSELEKKLLSSIDHVSQLQSRVNHSQRDVECQAIPRQ 831
Cdd:pfam05483 603 IENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEE 671
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
486-729 |
1.12e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 486 KNEIESLRQTFSDAKIRIRELEEDANIFRKDLEKADDDRLKLDAALKEANEEIDSKAAEIVASLNTANRLQNEKDQMNHA 565
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 566 ISymeERMQV-YRNTIQdhnlvvtdekienwrktmsDPRYMIMHSKEVQTTLTSQQLSEHESDFLSTQ-QTLHDLKKEYS 643
Cdd:COG4942 106 LA---ELLRAlYRLGRQ-------------------PPLALLLSPEDFLDAVRRLQYLKYLAPARREQaEELRADLAELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 644 AKNTTLVDKFKEVEEILLAKTElvdaLTKQLENIRKDQTRELSLKQSERDQYKKSLEEMTFIAEKvpiLEAEILQLSKDK 723
Cdd:COG4942 164 ALRAELEAERAELEALLAELEE----ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE---LEALIARLEAEA 236
|
....*.
gi 1767287842 724 NEITAR 729
Cdd:COG4942 237 AAAAER 242
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
518-788 |
1.67e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 518 EKADDDRLKLDAALKEANEEIDSKAAEIVASLNTANRLQNEKDQMNHAISYMEERMQVYRNTI--QDHNLVVTDEKIENW 595
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIsaLRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 596 RKTMSDPRYMIMHSKEVQTTLTSQ--QLSEHESDFLSTQQTLHDLKKEYSAKNTTLVDKFKEVEEILlakTELVDALTkQ 673
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERleEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL---TLLNEEAA-N 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 674 LENIRKDQTRELSLKQSERDQYKKSLEEMtfiAEKVPILEAEILQLSKDKNEITARLKHDQEYF----------EDELAK 743
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEEL---SEDIESLAAEIEELEELIEELESELEALLNERasleealallRSELEE 898
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1767287842 744 LLNDSMNIKKERDDYLTEHIRANEsMIERLKLEISGLKKDLENQK 788
Cdd:TIGR02168 899 LSEELRELESKRSELRRELEELRE-KLAQLELRLEGLEVRIDNLQ 942
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
607-998 |
2.59e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.40 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 607 MHSKEVQTTLTSQQLSEHESDFlstqQTLHDLKKEYSAKNTTLVDKFKEVEEILLAKTELVDALTKQLENIRKDQTRELS 686
Cdd:pfam05483 235 INDKEKQVSLLLIQITEKENKM----KDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMS 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 687 LkqserdqyKKSLEEMTFIAEKVpileaeILQLSKDKNeitarlkhdqeyfedelaKLLNDSMNIKKERDDYLTEHIRAN 766
Cdd:pfam05483 311 T--------QKALEEDLQIATKT------ICQLTEEKE------------------AQMEELNKAKAAHSFVVTEFEATT 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 767 ESMIERLKLEisglKKDLENQKMQAHLQKSELEKKlLSSIDHVSQLQsrvnhSQRDVECQAIprqinkyvgckpnvknKE 846
Cdd:pfam05483 359 CSLEELLRTE----QQRLEKNEDQLKIITMELQKK-SSELEEMTKFK-----NNKEVELEEL----------------KK 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 847 TIIEKGALFDENEERLRICKaELETTRRQVTVLQQKlvsiiQQQSSQKIKKRIAVVEDSNKNTV-HTEDLESKMKEVELK 925
Cdd:pfam05483 413 ILAEDEKLLDEKKQFEKIAE-ELKGKEQELIFLLQA-----REKEIHDLEIQLTAIKTSEEHYLkEVEDLKTELEKEKLK 486
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1767287842 926 NTELMERIDSLEAERfvassieksriQKLVNEFDNLKQKLDN---DMSNYSKEKQWLQWRISNLEKDNSELQKQIQ 998
Cdd:pfam05483 487 NIELTAHCDKLLLEN-----------KELTQEASDMTLELKKhqeDIINCKKQEERMLKQIENLEEKEMNLRDELE 551
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
516-1022 |
4.10e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 4.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 516 DLEKADDdrlKLDAALKEANEEIDSKAAEIVASLNTANRLQNEKDQMNHAISYMEERMQVYRNTIqdhnlvvtdEKIENW 595
Cdd:PRK03918 159 DYENAYK---NLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELR---------EELEKL 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 596 RKTMS--DPRYMIMHSKEVQTTLTSQQLSEHESDFLSTQQTLHDLKKEysaknttlvdkFKEVEEILlaktelvdaltKQ 673
Cdd:PRK03918 227 EKEVKelEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE-----------IEELEEKV-----------KE 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 674 LENIRKDQTRELSLKQsERDQYKKSL----EEMTFIAEKVPILEAEILQLSKDKNEItarlkhdqEYFEDELAKLLNDSM 749
Cdd:PRK03918 285 LKELKEKAEEYIKLSE-FYEEYLDELreieKRLSRLEEEINGIEERIKELEEKEERL--------EELKKKLKELEKRLE 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 750 NIKKERDDYltEHIRANESMIERLKLEISGLKKD-LENQKMQAHLQKSELEKKLLSSIDHVSQLQSRVNHSQRDVE---- 824
Cdd:PRK03918 356 ELEERHELY--EEAKAKKEELERLKKRLTGLTPEkLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEelkk 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 825 ----CQAIPRQINKYVgcKPNVKNKET-----IIEKGALFDENEERLRICKAELETTRR-------------QVTVLQQK 882
Cdd:PRK03918 434 akgkCPVCGRELTEEH--RKELLEEYTaelkrIEKELKEIEEKERKLRKELRELEKVLKkeseliklkelaeQLKELEEK 511
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 883 LVSIIQQQSSQK-------------IKKRIAVVEDSNKNTVHTED----LESKMKEVELKNTELMERIDSLEAERFVASS 945
Cdd:PRK03918 512 LKKYNLEELEKKaeeyeklkeklikLKGEIKSLKKELEKLEELKKklaeLEKKLDELEEELAELLKELEELGFESVEELE 591
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1767287842 946 IEKSRIQKLVNEFDNLKqkldndmsNYSKEKQWLQWRISNLEKDNSELQKQIQpSSEKSLESLNK--GTLRKTMSEPDF 1022
Cdd:PRK03918 592 ERLKELEPFYNEYLELK--------DAEKELEREEKELKKLEEELDKAFEELA-ETEKRLEELRKelEELEKKYSEEEY 661
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
848-1211 |
4.72e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 4.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 848 IIEKGALFDENEERLRICKAELETTRRQVTVLQQKLVSIIQQQSSQKIKKRIAVVEDsnkntvhteDLESKMKEVE---- 923
Cdd:TIGR02169 158 IIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQ---------ALLKEKREYEgyel 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 924 LKNTELMER-IDSLEAERfvaSSIEKS------RIQKLVNEFDNLKQKLD------NDMSnySKEKQWLQWRISNLEKDN 990
Cdd:TIGR02169 229 LKEKEALERqKEAIERQL---ASLEEEleklteEISELEKRLEEIEQLLEelnkkiKDLG--EEEQLRVKEKIGELEAEI 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 991 SELQKQIQpSSEKSLESLNKgTLRKTMSEPDFGDDMSTEGDGASTNESADfmVESVTAPVLSLKspqpfsqlaDVLNLVR 1070
Cdd:TIGR02169 304 ASLERSIA-EKERELEDAEE-RLAKLEAEIDKLLAEIEELEREIEEERKR--RDKLTEEYAELK---------EELEDLR 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 1071 SDLEQVlteieEPEAAKQEEPQMSLEKSTNILNDVLNEwaederktLERQLKRSQEERSLLKNKNVQLSKDLQVAMAELN 1150
Cdd:TIGR02169 371 AELEEV-----DKEFAETRDELKDYREKLEKLKREINE--------LKRELDRLQEELQRLSEELADLNAAIAGIEAKIN 437
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1767287842 1151 VYKSEKPHKDDEPKNLERSSSFSSFNHNKSENDTQRWKEKSGTLFREVNRIRQNLAEALEQ 1211
Cdd:TIGR02169 438 ELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ 498
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1094-1227 |
5.37e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 5.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 1094 SLEKSTNILNDVLNEwAEDERKTLERQLKRSQEERSLLKNKNVQLSKDLQVAMAELNVYKSEKPHKDDEPKNLERSSSFS 1173
Cdd:TIGR02168 236 ELREELEELQEELKE-AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1767287842 1174 SFNHNKSENDTQRWKEKSGTLFREVNRIRQNLAEALEQNNELRYQLALARGERE 1227
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE 368
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
499-710 |
6.96e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 6.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 499 AKIRIRELEEDANIFRKDLEKADDDRLKLDAALKEANEEIDSKAAEIvaslntaNRLQNEKDQMNHAISYMEERMQVYRN 578
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAEL-------EALQAEIDKLQAEIAEAEAEIEERRE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 579 TIQDHnlvVTDEKIENWRKTMSDpryMIMHSKEVQTTLTS----QQLSEHESDFLSTQQT----LHDLKKEYSAKNTTLV 650
Cdd:COG3883 87 ELGER---ARALYRSGGSVSYLD---VLLGSESFSDFLDRlsalSKIADADADLLEELKAdkaeLEAKKAELEAKLAELE 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 651 DKFKEVEEILLAKTELVDALTKQLENIRKDQTRELSLKQSERDQYKKSLEEMTFIAEKVP 710
Cdd:COG3883 161 ALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAA 220
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
486-1003 |
8.12e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.81 E-value: 8.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 486 KNEIESLRQTFSDAKIRIRELEEDANIFRKDLEKADDDRLKLDAALKEANEEIDSKAAEIVASLNTANRLQNEkdqmnha 565
Cdd:TIGR02168 329 ESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE------- 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 566 ISYMEERMQvyrntIQDHNLVVTDEKIENWRKTMSDPRYmimhsKEVQTTLTS--QQLSEHESDFLSTQQTLHDLKKEYs 643
Cdd:TIGR02168 402 IERLEARLE-----RLEDRRERLQQEIEELLKKLEEAEL-----KELQAELEEleEELEELQEELERLEEALEELREEL- 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 644 AKNTTLVDKFKEVEEILLAKtelVDALTKQLENIRKDQT--RELSLKQSERD--------------QYKKSLEE------ 701
Cdd:TIGR02168 471 EEAEQALDAAERELAQLQAR---LDSLERLQENLEGFSEgvKALLKNQSGLSgilgvlselisvdeGYEAAIEAalggrl 547
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 702 --------------MTFIAE----KVPILEAEILQLSKDKNEITARLKH---------DQEYFEDELAKLLN-------- 746
Cdd:TIGR02168 548 qavvvenlnaakkaIAFLKQnelgRVTFLPLDSIKGTEIQGNDREILKNiegflgvakDLVKFDPKLRKALSyllggvlv 627
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 747 -----DSMNIKKE---------RDDYLT--------EHIRANESMIERlKLEISGLKKDLENQKMQAHLQK---SELEKK 801
Cdd:TIGR02168 628 vddldNALELAKKlrpgyrivtLDGDLVrpggvitgGSAKTNSSILER-RREIEELEEKIEELEEKIAELEkalAELRKE 706
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 802 LLSSIDHVSQLQSRVNHSQRDV------------ECQAIPRQINKYVGCKPNVKNKETIIEkgALFDENEERLRICKAEL 869
Cdd:TIGR02168 707 LEELEEELEQLRKELEELSRQIsalrkdlarleaEVEQLEERIAQLSKELTELEAEIEELE--ERLEEAEEELAEAEAEI 784
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 870 ETTRRQVTVLQQKLVSIIQQQSSQKIKKRiAVVEDSNKNTVHTEDLESKMKEVELKNTELMERIDSLEAER-FVASSIEK 948
Cdd:TIGR02168 785 EELEAQIEQLKEELKALREALDELRAELT-LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIeSLAAEIEE 863
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 949 SR-----IQKLVNEFDNLKQKLDNDMSNYSKEKQWLQWRISNLEKDNSELQKQIQPSSEK 1003
Cdd:TIGR02168 864 LEelieeLESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
581-916 |
9.21e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.80 E-value: 9.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 581 QDHNLVVTDEKIENWRKTMSDPRYMIMHSKEVQTTLTSQQLSEHESdfLSTQQTLHDlkkeysakntTLVDKFKEVEEIL 660
Cdd:TIGR00606 834 KQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTN--LQRRQQFEE----------QLVELSTEVQSLI 901
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 661 LAKTELVDALTKQLENIRKDQTRELSLKQSERDQYKKSLEEMTFIAEKVPILEAEILQLSKDKNEITARLKHDQeyfEDE 740
Cdd:TIGR00606 902 REIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQK---ETE 978
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 741 LAKlLNDSMNIKKERDDYLTEHIRANESMIERLKLEISGLKKDLENQKMQAHLQKSELE-KKLLSSIDHVSQLQSRVNHS 819
Cdd:TIGR00606 979 LNT-VNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEElKQHLKEMGQMQVLQMKQEHQ 1057
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 820 QRDVECQAIPRQINKYVGCKPNVKNKETIIEK---GALFDENEERLRICKAELETTR---RQVTVLQQKLVSIIQQQSSQ 893
Cdd:TIGR00606 1058 KLEENIDLIKRNHVLALGRQKGYEKEIKHFKKelrEPQFRDAEEKYREMMIVMRTTElvnKDLDIYYKTLDQAIMKFHSM 1137
|
330 340
....*....|....*....|...
gi 1767287842 894 KIKKRIAVVEDSNKNTVHTEDLE 916
Cdd:TIGR00606 1138 KMEEINKIIRDLWRSTYRGQDIE 1160
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
486-802 |
9.39e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.72 E-value: 9.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 486 KNEIESLRQTFSDAKIRIRELEEDANIFRK---DLEKADDDRLKLDAALKEANEEIDSKAAEIVASLNTANRLQNEKDQM 562
Cdd:TIGR00618 562 KEQMQEIQQSFSILTQCDNRSKEDIPNLQNitvRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQEL 641
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 563 NHAISYME-ERMQVYRNTIQDHNLVVTDEKIENWRKTMSDPRYMIMHSKEV----------QTTLTSQQLSEHESD--FL 629
Cdd:TIGR00618 642 ALKLTALHaLQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLtywkemlaqcQTLLRELETHIEEYDreFN 721
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 630 STQQTLHDLKKEYSAKNTTLVDKFKEVEEilLAKTELvdaltKQLENIRKDQTRELSLKQSERDQYKKSLEEMTFiaeKV 709
Cdd:TIGR00618 722 EIENASSSLGSDLAAREDALNQSLKELMH--QARTVL-----KARTEAHFNNNEEVTAALQTGAELSHLAAEIQF---FN 791
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1767287842 710 PILEAEILQLSKDKNEITARLKHdqeyfeDELAKLLNDSMNIKKERD-DYLTEHIRANESMIERLKLEISGLKKDLEnQK 788
Cdd:TIGR00618 792 RLREEDTHLLKTLEAEIGQEIPS------DEDILNLQCETLVQEEEQfLSRLEEKSATLGEITHQLLKYEECSKQLA-QL 864
|
330
....*....|....
gi 1767287842 789 MQAHLQKSELEKKL 802
Cdd:TIGR00618 865 TQEQAKIIQLSDKL 878
|
|
| |
