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Conserved domains on  [gi|1831515778|ref|NP_001367444|]
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Stress-induced-phosphoprotein 1 [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 11-264 9.80e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 87.09  E-value: 9.80e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  11 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETradykliAKAMSRAGNAF 90
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDR-------AEALLELAQDY 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  91 QKQNDLSLAVQWFHRSLSEFRDP--------ELVKKVKELEKQLKAAERLAYINPELAQEEKNKGNEYFKKGDYPTAMRH 162
Cdd:COG2956    87 LKAGLLDRAEELLEKLLELDPDDaealrllaEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 163 YNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 242
Cdd:COG2956   167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD 246

                         250       260
                  ....*....|....*....|..
gi 1831515778 243 EAREGVRncLRSNDEDPEKAKE 264
Cdd:COG2956   247 LLLALAD--LLERKEGLEAALA 266
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 259-311 1.10e-11

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


:

Pssm-ID: 436075  Cd Length: 55  Bit Score: 59.11  E-value: 1.10e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1831515778 259 PEKAKERSLADPEVQEILRDPGMRMILEQMSNDPGAVREHLKNPEIFQKLMKL 311
Cdd:pfam17830   1 DPELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVL 53
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 11-264 9.80e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 87.09  E-value: 9.80e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  11 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETradykliAKAMSRAGNAF 90
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDR-------AEALLELAQDY 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  91 QKQNDLSLAVQWFHRSLSEFRDP--------ELVKKVKELEKQLKAAERLAYINPELAQEEKNKGNEYFKKGDYPTAMRH 162
Cdd:COG2956    87 LKAGLLDRAEELLEKLLELDPDDaealrllaEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 163 YNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 242
Cdd:COG2956   167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD 246

                         250       260
                  ....*....|....*....|..
gi 1831515778 243 EAREGVRncLRSNDEDPEKAKE 264
Cdd:COG2956   247 LLLALAD--LLERKEGLEAALA 266
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 259-311 1.10e-11

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


Pssm-ID: 436075  Cd Length: 55  Bit Score: 59.11  E-value: 1.10e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1831515778 259 PEKAKERSLADPEVQEILRDPGMRMILEQMSNDPGAVREHLKNPEIFQKLMKL 311
Cdd:pfam17830   1 DPELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVL 53
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 5-241 7.56e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 60.00  E-value: 7.56e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778   5 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNItFYNNKAAVYFEEKKFAECVQFCEKAVEVgretRADYkliAKAMS 84
Cdd:TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV-YYSNRAACHNALGDWEKVVEDTTAALEL----DPDY---SKALN 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  85 RAGNAFQKQNDLSLAVQWFHRS--LSEFRDPELVKKVKELEKQL---KAAERLAYINPELAQ------------------ 141
Cdd:TIGR00990 199 RRANAYDGLGKYADALLDLTASciIDGFRNEQSAQAVERLLKKFaesKAKEILETKPENLPSvtfvgnylqsfrpkprpa 278

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 142 --EEKNKGNEYFKKGDYPTAMRH--------YNEAV----------KRDPENAILYSNRAACLTKLMEFQRALDDCDTCI 201
Cdd:TIGR00990 279 glEDSNELDEETGNGQLQLGLKSpeskadesYEEAArafekaldlgKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1831515778 202 RLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 241
Cdd:TIGR00990 359 ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED 398
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 139-274 8.33e-10

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 59.03  E-value: 8.33e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 139 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 218
Cdd:PLN03088    1 MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1831515778 219 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLRSNDEDPEKAKERSLADPEVQE 274
Cdd:PLN03088   81 MKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEEKDLVQPVPSDLPSSV 136
STI1 smart00727
Heat shock chaperonin-binding motif;
269-308 2.69e-09

Heat shock chaperonin-binding motif;


Pssm-ID: 128966  Cd Length: 41  Bit Score: 51.88  E-value: 2.69e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1831515778  269 DPEVQEILRDPGMRMILEQMSNDPGAVREHLK-NPEIFQKL 308
Cdd:smart00727   1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMLQeNPQLLQLI 41
TPR_11 pfam13414
TPR repeat;
12-51 1.11e-06

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 44.77  E-value: 1.11e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1831515778  12 GNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE 51
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 144-173 2.84e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 2.84e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 1831515778  144 KNKGNEYFKKGDYPTAMRHYNEAVKRDPEN 173
Cdd:smart00028   5 YNLGNAYLKLGDYDEALEYYEKALELDPNN 34
BamD cd15830
BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, ...
 7-172 4.36e-04

BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, is part of the beta-barrel assembly machinery (BAM), which is essential for the folding and insertion of outer membrane proteins (OMPs) in the OM of Gram-negative bacteria. Transmembrane OMPs carry out important functions including nutrient and waste management, cell adhesion, and structural roles. The BAM complex is composed of the beta-barrel OMP BamA (also called Omp85/YaeT) and four lipoproteins BamBCDE. BamD is the only BAM lipoprotein required for viability. Both BamA and BamD are broadly distributed in Gram-negative bacteria, and may constitute the core of the BAM complex. BamD contains five Tetratricopeptide repeats (TPRs). The three TPRs at the N-terminus may participate in interaction with substrates, while the two TPRs in the C-terminus may be involved in binding with other BAM components.


Pssm-ID: 276939 [Multi-domain]  Cd Length: 213  Bit Score: 40.70  E-value: 4.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778   7 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNitfyNNKAAVYFeekkfaecvqfcEKAVevgretrADYKLIAKAMSRA 86
Cdd:cd15830    42 AQLDLIYAYYKNADYELALASAERFIRLYPRH----PNIDYVYY------------MRGL-------SNYKLDRSFLQRF 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  87 GNAFQKQNDLSLAVQwfhrSLSEFRDpeLVKKVKELEKQLKAAERLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEA 166
Cdd:cd15830    99 FPIDRSDRDQSYARE----AFQDFKD--LIQRYPNSEYATDAKQRMIYLRNRLAEHELSIARYYLKRGAYIAAINRAEEV 172


                  ....*.
gi 1831515778 167 VKRDPE 172
Cdd:cd15830   173 LENYPD 178
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 11-46 1.03e-03

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 39.84  E-value: 1.03e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1831515778  11 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKA 46
Cdd:NF033920  196 LGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLA 231
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 11-264 9.80e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 87.09  E-value: 9.80e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  11 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETradykliAKAMSRAGNAF 90
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDR-------AEALLELAQDY 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  91 QKQNDLSLAVQWFHRSLSEFRDP--------ELVKKVKELEKQLKAAERLAYINPELAQEEKNKGNEYFKKGDYPTAMRH 162
Cdd:COG2956    87 LKAGLLDRAEELLEKLLELDPDDaealrllaEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 163 YNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 242
Cdd:COG2956   167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD 246

                         250       260
                  ....*....|....*....|..
gi 1831515778 243 EAREGVRncLRSNDEDPEKAKE 264
Cdd:COG2956   247 LLLALAD--LLERKEGLEAALA 266
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
3-235 1.95e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 85.83  E-value: 1.95e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778   3 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETradykliAKA 82
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD-------AEA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  83 MSRAGNAFQKQNDLSLAVQWFHRSLSefrdpelvkkvkelekqlkaaerlayINPELAQEEKNKGNEYFKKGDYPTAMRH 162
Cdd:COG0457    79 LNNLGLALQALGRYEEALEDYDKALE--------------------------LDPDDAEALYNLGLALLELGRYDEAIEA 132

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831515778 163 YNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDAL 235
Cdd:COG0457   133 YERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQ 205
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
80-300 2.31e-19

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 84.97  E-value: 2.31e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  80 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKELEKQLKAAERLAYINPELAQEEKNKGNEYFKKGDYPTA 159
Cdd:COG4785    13 ALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLA 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 160 MRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDP 239
Cdd:COG4785    93 IADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDP 172

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1831515778 240 SNEEAreGVRNCLRSNDEDPEKAKERSLADPevqeilrdpgmrMILEQMSNDPGAVREHLK 300
Cdd:COG4785   173 NDPER--ALWLYLAERKLDPEKALALLLEDW------------ATAYLLQGDTEEARELFK 219
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
32-277 8.28e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 81.21  E-value: 8.28e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  32 IELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGREtradyklIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSefr 111
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD-------DAEALYNLGLAYLRLGRYEEALADYEQALE--- 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 112 dpelvkkvkelekqlkaaerlayINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQ 191
Cdd:COG0457    71 -----------------------LDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYD 127

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 192 RALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLRSNDEDPEKAKERSLADPE 271
Cdd:COG0457   128 EAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQAL 207


                  ....*.
gi 1831515778 272 VQEILR 277
Cdd:COG0457   208 RKKLAI 213
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 121-245 4.92e-17

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 81.58  E-value: 4.92e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 121 ELEKQLKAAERLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTC 200
Cdd:COG3914    93 RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRA 172

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1831515778 201 IRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAR 245
Cdd:COG3914   173 LELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 122-245 1.40e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 74.26  E-value: 1.40e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 122 LEKQLKAAERLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCI 201
Cdd:COG3914    60 LALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRAL 139

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1831515778 202 RLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAR 245
Cdd:COG3914   140 ALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEAL 183
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 3-227 7.83e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 71.95  E-value: 7.83e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778   3 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVgretRADYkliAKA 82
Cdd:COG3914    76 LLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALAL----NPDF---AEA 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  83 MSRAGNAFQKQNDLSLAVQwfhrslsefrdpelvkkvkelekqlkAAERLAYINPELAQEEKNKGNEYFKKGDYPTAMRH 162
Cdd:COG3914   149 YLNLGEALRRLGRLEEAIA--------------------------ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAA 202

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831515778 163 YNEAVKRDPENAILYSNRAACLTK------LMEFQRALDDCDTCIRLDSKFIKGYIR---KAACLVAMREWSKA 227
Cdd:COG3914   203 YRRALELDPDNADAHSNLLFALRQacdwevYDRFEELLAALARGPSELSPFALLYLPdddPAELLALARAWAQL 276
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 7-258 9.93e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 71.56  E-value: 9.93e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778   7 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC--VQFCEKAVEVGRETRADYKLIAKAMS 84
Cdd:COG3914     3 AAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAaaAALLALAAGEAAAAAAALLLLAALLE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  85 RAGNAFQKQNDLSLAVQWFHRSLSefRDPELVK----------KVKELEKQLKAAERLAYINPELAQEEKNKGNEYFKKG 154
Cdd:COG3914    83 LAALLLQALGRYEEALALYRRALA--LNPDNAEalfnlgnlllALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 155 DYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDA 234
Cdd:COG3914   161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELL 240

                         250       260
                  ....*....|....*....|....
gi 1831515778 235 LQVDPSNEEAREGVRNCLRSNDED 258
Cdd:COG3914   241 AALARGPSELSPFALLYLPDDDPA 264
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 259-311 1.10e-11

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


Pssm-ID: 436075  Cd Length: 55  Bit Score: 59.11  E-value: 1.10e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1831515778 259 PEKAKERSLADPEVQEILRDPGMRMILEQMSNDPGAVREHLKNPEIFQKLMKL 311
Cdd:pfam17830   1 DPELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVL 53
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 119-245 7.29e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 58.86  E-value: 7.29e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 119 VKELEKQLKAaerlayiNPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCD 198
Cdd:COG4235     3 IARLRQALAA-------NPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLE 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1831515778 199 TCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAR 245
Cdd:COG4235    76 RALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 120-241 1.99e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.89  E-value: 1.99e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 120 KELEKQLKAAERLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 199
Cdd:COG4783    18 GDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEK 97

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1831515778 200 CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 241
Cdd:COG4783    98 ALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 2-173 7.31e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 56.35  E-value: 7.31e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778   2 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 81
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  82 AMSRAGNafqkqndlslavqwfhrslsefrdpelvkkvkeLEKQLKAAERLAYINPELAQEEKNKGNEYFKKGDYPTAMR 161
Cdd:COG4783    81 ALLKAGD---------------------------------YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127

                         170
                  ....*....|..
gi 1831515778 162 HYNEAVKRDPEN 173
Cdd:COG4783   128 ALEKALELDPDD 139
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 5-241 7.56e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 60.00  E-value: 7.56e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778   5 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNItFYNNKAAVYFEEKKFAECVQFCEKAVEVgretRADYkliAKAMS 84
Cdd:TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV-YYSNRAACHNALGDWEKVVEDTTAALEL----DPDY---SKALN 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  85 RAGNAFQKQNDLSLAVQWFHRS--LSEFRDPELVKKVKELEKQL---KAAERLAYINPELAQ------------------ 141
Cdd:TIGR00990 199 RRANAYDGLGKYADALLDLTASciIDGFRNEQSAQAVERLLKKFaesKAKEILETKPENLPSvtfvgnylqsfrpkprpa 278

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 142 --EEKNKGNEYFKKGDYPTAMRH--------YNEAV----------KRDPENAILYSNRAACLTKLMEFQRALDDCDTCI 201
Cdd:TIGR00990 279 glEDSNELDEETGNGQLQLGLKSpeskadesYEEAArafekaldlgKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1831515778 202 RLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 241
Cdd:TIGR00990 359 ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED 398
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 139-274 8.33e-10

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 59.03  E-value: 8.33e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 139 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 218
Cdd:PLN03088    1 MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1831515778 219 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLRSNDEDPEKAKERSLADPEVQE 274
Cdd:PLN03088   81 MKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEEKDLVQPVPSDLPSSV 136
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 138-260 1.36e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.58  E-value: 1.36e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 138 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 217
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1831515778 218 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLRSNDEDPE 260
Cdd:COG4783    82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
150-240 1.56e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 54.41  E-value: 1.56e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 150 YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALdDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQR 229
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                          90
                  ....*....|.
gi 1831515778 230 AYEDALQVDPS 240
Cdd:COG3063    81 YLERALELDPS 91
STI1 smart00727
Heat shock chaperonin-binding motif;
269-308 2.69e-09

Heat shock chaperonin-binding motif;


Pssm-ID: 128966  Cd Length: 41  Bit Score: 51.88  E-value: 2.69e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1831515778  269 DPEVQEILRDPGMRMILEQMSNDPGAVREHLK-NPEIFQKL 308
Cdd:smart00727   1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMLQeNPQLLQLI 41
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 11-265 3.76e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 57.79  E-value: 3.76e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  11 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC-----------------------VQFCEKAVE 67
Cdd:TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAekhadallkkapnsplahylkalVDFQKKNYE 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  68 VGRETRADYKLIA----KAMSRAGNAFQKQNDLSLAVQWFHRSLSefRDPELVKKVKELE----KQLKAAERLAYINPEL 139
Cdd:TIGR02917 279 DARETLQDALKSApeylPALLLAGASEYQLGNLEQAYQYLNQILK--YAPNSHQARRLLAsiqlRLGRVDEAIATLSPAL 356

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 140 AQEEKNK------GNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAacLTKLM--EFQRALDDCDTCIRLDSK----- 206
Cdd:TIGR02917 357 GLDPDDPaalsllGEAYLALGDFEKAAEYLAKATELDPENAAARTQLG--ISKLSqgDPSEAIADLETAAQLDPElgrad 434

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 207 --FIKGYIR---------------------------KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNcLRSNDE 257
Cdd:TIGR02917 435 llLILSYLRsgqfdkalaaakklekkqpdnaslhnlLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLAR-IDIQEG 513


                  ....*...
gi 1831515778 258 DPEKAKER 265
Cdd:TIGR02917 514 NPDDAIQR 521
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 88-239 5.22e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 54.58  E-value: 5.22e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  88 NAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKELEKQLKAAERLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAV 167
Cdd:COG5010     2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1831515778 168 KRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDP 239
Cdd:COG5010    82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
3-153 2.90e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 53.38  E-value: 2.90e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778   3 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVgretRADYkliAKA 82
Cdd:COG4785    71 DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALEL----DPDY---AYA 143

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831515778  83 MSRAGNAFQKQNDLSLAVQWFHRSLSEF-RDPELVKKVKELEKQLKAAERLAYINPE-----LAQEEKNKGNEYFKK 153
Cdd:COG4785   144 YLNRGIALYYLGRYELAIADLEKALELDpNDPERALWLYLAERKLDPEKALALLLEDwatayLLQGDTEEARELFKL 220
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 126-278 4.04e-08

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 54.60  E-value: 4.04e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 126 LKAAERLAYinpelAQEEKNKGNEYFKKGDYPTAMRHYNEAV--KRDPenaILYSNRAACLTKLMEFQRALDDCDTCIRL 203
Cdd:TIGR00990 118 LSEEERKKY-----AAKLKEKGNKAYRNKDFNKAIKLYSKAIecKPDP---VYYSNRAACHNALGDWEKVVEDTTAALEL 189

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831515778 204 DSKFIKGYIRKAAclvAMREWSKaqraYEDALqVDPSNEEAREGVRNclrsndEDPEKAKERSL---ADPEVQEILRD 278
Cdd:TIGR00990 190 DPDYSKALNRRAN---AYDGLGK----YADAL-LDLTASCIIDGFRN------EQSAQAVERLLkkfAESKAKEILET 253
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 3-142 6.01e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.19  E-value: 6.01e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778   3 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETradykliAKA 82
Cdd:COG2956   142 ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDY-------LPA 214

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1831515778  83 MSRAGNAFQKQNDLSLAVQWFHRSLSEF-RDPELVKKVKELEKQLKAAERLAYINPELAQE 142
Cdd:COG2956   215 LPRLAELYEKLGDPEEALELLRKALELDpSDDLLLALADLLERKEGLEAALALLERQLRRH 275
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
14-108 8.51e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 49.40  E-value: 8.51e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  14 AAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFcEKAVEVGREtradyklIAKAMSRAGNAFQKQ 93
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPN-------NAEALLNLAELLLEL 72

                          90
                  ....*....|....*
gi 1831515778  94 NDLSLAVQWFHRSLS 108
Cdd:COG3063    73 GDYDEALAYLERALE 87
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 159-245 4.55e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.08  E-value: 4.55e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 159 AMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD 238
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81


                  ....*..
gi 1831515778 239 PSNEEAR 245
Cdd:COG4235    82 PDNPEAL 88
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 5-248 8.92e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 50.37  E-value: 8.92e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778   5 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET------RADYKL 78
Cdd:TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDpdiyyhRAQLHF 410

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  79 IAKAMSRAGNAFQKQNDLslavqwfhrslsefrDPELVkkvkelekqlkaaerLAYINPELAQeeknkgneyFKKGDYPT 158
Cdd:TIGR00990 411 IKGEFAQAGKDYQKSIDL---------------DPDFI---------------FSHIQLGVTQ---------YKEGSIAS 451

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 159 AMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF------IKGYIRKAACLVAMRE-WSKAQRAY 231
Cdd:TIGR00990 452 SMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETkpmymnVLPLINKALALFQWKQdFIEAENLC 531

                         250
                  ....*....|....*..
gi 1831515778 232 EDALQVDPSNEEAREGV 248
Cdd:TIGR00990 532 EKALIIDPECDIAVATM 548
TPR_11 pfam13414
TPR repeat;
12-51 1.11e-06

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 44.77  E-value: 1.11e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1831515778  12 GNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE 51
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
TPR_11 pfam13414
TPR repeat;
147-182 1.69e-06

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 44.00  E-value: 1.69e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1831515778 147 GNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAA 182
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGL 36
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 3-177 2.20e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.19  E-value: 2.20e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778   3 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 82
Cdd:COG2956   108 DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAEL 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  83 MSRAGNafqkqndlslavqwfhrslsefrdpelvkkvkeLEKQLKAAERLAYINPELAQEEKNKGNEYFKKGDYPTAMRH 162
Cdd:COG2956   188 YLEQGD---------------------------------YEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALEL 234

                         170
                  ....*....|....*
gi 1831515778 163 YNEAVKRDPENAILY 177
Cdd:COG2956   235 LRKALELDPSDDLLL 249
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 11-108 2.97e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.77  E-value: 2.97e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  11 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETradykliAKAMSRAGNAF 90
Cdd:COG4235    23 LGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDN-------PEALYLLGLAA 95

                          90
                  ....*....|....*...
gi 1831515778  91 QKQNDLSLAVQWFHRSLS 108
Cdd:COG4235    96 FQQGDYAEAIAAWQKLLA 113
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 10-86 4.29e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.38  E-value: 4.29e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831515778  10 DLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGREtRADYKLIAKAMSRA 86
Cdd:COG4235    56 DLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA-DAPARLLEASIAEA 131
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 3-107 5.91e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.72  E-value: 5.91e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778   3 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETradykliAKA 82
Cdd:COG5010    52 KAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDN-------PNA 124

                          90       100
                  ....*....|....*....|....*
gi 1831515778  83 MSRAGNAFQKQNDLSLAVQWFHRSL 107
Cdd:COG5010   125 YSNLAALLLSLGQDDEAKAALQRAL 149
TPR_1 pfam00515
Tetratricopeptide repeat;
5-38 6.16e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.41  E-value: 6.16e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1831515778   5 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN 38
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 73-204 3.02e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.41  E-value: 3.02e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  73 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKELEKQLKAAERLAYINPELAQEEKNKGNEYFK 152
Cdd:COG5010    21 RTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSR 100

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1831515778 153 KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD 204
Cdd:COG5010   101 SGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TPR_12 pfam13424
Tetratricopeptide repeat;
42-107 4.03e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 41.22  E-value: 4.03e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831515778  42 YNNKAAVYFEEKKFAECVQFCEKAVEVGRETR-ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 107
Cdd:pfam13424   6 LNNLAAVLRRLGRYDEALELLEKALEIARRLLgPDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
11-74 6.69e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.31  E-value: 6.69e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831515778  11 LGNAAYKQKDFEKAhVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA 74
Cdd:COG3063    32 LGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSALR 94
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
105-245 1.14e-04

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 42.95  E-value: 1.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 105 RSLSEFRDPElvKKVKELEKQLKAAErlayinpeLAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAAC 183
Cdd:COG4700    64 RAARNALDPG--RELRELEKALEFAD--------TVQNRVRLADALLELGRYDEAIELYEEALTGIfADDPHILLGLAQA 133

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831515778 184 LTKLMEFQRALDDCDTCIRLDSKFIK--GYIRKAACLVAMREWSKAQRAYEDALQVDPsNEEAR 245
Cdd:COG4700   134 LFELGRYAEALETLEKLIAKNPDFKSsdAHLLYARALEALGDLEAAEAELEALARRYS-GPEAR 196
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 11-244 1.31e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.53  E-value: 1.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  11 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAF 90
Cdd:TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLK 584

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  91 QKQNDLSLAVQWFHRSLSEFrdpELV----KKVKELEKQLKAAERLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEA 166
Cdd:TIGR02917 585 KALAILNEAADAAPDSPEAW---LMLgraqLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRA 661

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 167 VKRDPENAILysnraacLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL-----VAMRE--WSKAQRAYEDALQVDP 239
Cdd:TIGR02917 662 LELKPDNTEA-------QIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFelegdLYLRQkdYPAAIQAYRKALKRAP 734


                  ....*
gi 1831515778 240 SNEEA 244
Cdd:TIGR02917 735 SSQNA 739
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 14-126 1.57e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.36  E-value: 1.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  14 AAYKQKDFEKAHVHYDKAIELDPSNITF---YNNKAAVYFEEKKFAECVQFCEKAVevgrETRADYKLIAKAMSRAGNAF 90
Cdd:COG1729     2 ALLKAGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEAFEKLL----KRYPDSPKAPDALLKLGLSY 77

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1831515778  91 QKQNDLSLAVQWFHRSLSEFRDPELVKKVKELEKQL 126
Cdd:COG1729    78 LELGDYDKARATLEELIKKYPDSEAAKEARARLARL 113
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 3-67 1.67e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.48  E-value: 1.67e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831515778   3 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 67
Cdd:COG5010    86 NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
TPR_1 pfam00515
Tetratricopeptide repeat;
144-173 2.31e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.79  E-value: 2.31e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 1831515778 144 KNKGNEYFKKGDYPTAMRHYNEAVKRDPEN 173
Cdd:pfam00515   5 YNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 144-173 2.84e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 2.84e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 1831515778  144 KNKGNEYFKKGDYPTAMRHYNEAVKRDPEN 173
Cdd:smart00028   5 YNLGNAYLKLGDYDEALEYYEKALELDPNN 34
BamD cd15830
BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, ...
 7-172 4.36e-04

BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, is part of the beta-barrel assembly machinery (BAM), which is essential for the folding and insertion of outer membrane proteins (OMPs) in the OM of Gram-negative bacteria. Transmembrane OMPs carry out important functions including nutrient and waste management, cell adhesion, and structural roles. The BAM complex is composed of the beta-barrel OMP BamA (also called Omp85/YaeT) and four lipoproteins BamBCDE. BamD is the only BAM lipoprotein required for viability. Both BamA and BamD are broadly distributed in Gram-negative bacteria, and may constitute the core of the BAM complex. BamD contains five Tetratricopeptide repeats (TPRs). The three TPRs at the N-terminus may participate in interaction with substrates, while the two TPRs in the C-terminus may be involved in binding with other BAM components.


Pssm-ID: 276939 [Multi-domain]  Cd Length: 213  Bit Score: 40.70  E-value: 4.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778   7 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNitfyNNKAAVYFeekkfaecvqfcEKAVevgretrADYKLIAKAMSRA 86
Cdd:cd15830    42 AQLDLIYAYYKNADYELALASAERFIRLYPRH----PNIDYVYY------------MRGL-------SNYKLDRSFLQRF 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  87 GNAFQKQNDLSLAVQwfhrSLSEFRDpeLVKKVKELEKQLKAAERLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEA 166
Cdd:cd15830    99 FPIDRSDRDQSYARE----AFQDFKD--LIQRYPNSEYATDAKQRMIYLRNRLAEHELSIARYYLKRGAYIAAINRAEEV 172


                  ....*.
gi 1831515778 167 VKRDPE 172
Cdd:cd15830   173 LENYPD 178
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 23-174 6.79e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.22  E-value: 6.79e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  23 KAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETradykliAKAMSRAGNAFQKQNDLSLAVQW 102
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN-------ADALLDLAEALLAAGDTEEAEEL 73

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1831515778 103 FHRSLSefRDPElvkkvkelekQLKAAERLAYInpelaqeeknkgneYFKKGDYPTAMRHYNEAVKRDPENA 174
Cdd:COG4235    74 LERALA--LDPD----------NPEALYLLGLA--------------AFQQGDYAEAIAAWQKLLALLPADA 119
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 5-38 8.81e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 8.81e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1831515778    5 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN 38
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 11-36 8.96e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 36.35  E-value: 8.96e-04
                          10        20
                  ....*....|....*....|....*.
gi 1831515778  11 LGNAAYKQKDFEKAHVHYDKAIELDP 36
Cdd:pfam07719   7 LGLAYYKLGDYEEALEAYEKALELDP 32
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 11-46 1.03e-03

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 39.84  E-value: 1.03e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1831515778  11 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKA 46
Cdd:NF033920  196 LGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLA 231
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 18-260 1.23e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.45  E-value: 1.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  18 QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGnAFQK----- 92
Cdd:TIGR02917  35 KNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQG-KFQQvldel 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  93 -----QNDLSLAVQWFHRSLSEFRDPELVKKVKELEKQLKAAERLAYINPELAQEEKNKGneyfkkgDYPTAMRHYNEAV 167
Cdd:TIGR02917 114 pgktlLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAEN-------RFDEARALIDEVL 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 168 KRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN------ 241
Cdd:TIGR02917 187 TADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSplahyl 266

                         250       260       270
                  ....*....|....*....|....*....|
gi 1831515778 242 -----------EEAREGVRNCLRSNDEDPE 260
Cdd:TIGR02917 267 kalvdfqkknyEDARETLQDALKSAPEYLP 296
TPR_17 pfam13431
Tetratricopeptide repeat;
27-60 1.83e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 35.21  E-value: 1.83e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1831515778  27 HYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 60
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 3-264 1.95e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.07  E-value: 1.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778   3 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFaecvqfcEKAVEVGRETRADYKLIAKA 82
Cdd:TIGR02917 633 DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRT-------ESAKKIAKSLQKQHPKAALG 705

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  83 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKE----LEKQLKAAERLAY---INPELAQEEKNKGNEYFKKGD 155
Cdd:TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRallaSGNTAEAVKTLEAwlkTHPNDAVLRTALAELYLAQKD 785

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 156 YPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEfQRALDDCDTCIRL---DSKFIKGYirkAACLVAMREWSKAQRAYE 232
Cdd:TIGR02917 786 YDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKLapnIPAILDTL---GWLLVEKGEADRALPLLR 861

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1831515778 233 DALQVDPSNEEAREGVRNCLRSNDEDPEKAKE 264
Cdd:TIGR02917 862 KAVNIAPEAAAIRYHLALALLATGRKAEARKE 893
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 10-127 2.03e-03

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 39.38  E-value: 2.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778  10 DLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGREtradyklIAKAMSRAGNA 89
Cdd:PLN03088    7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-------LAKAYLRKGTA 79

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1831515778  90 FQKQNDLSLAVQWFHRSLS-EFRDPELVKKVKELEKQLK 127
Cdd:PLN03088   80 CMKLEEYQTAKAALEKGASlAPGDSRFTKLIKECDEKIA 118
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 149-246 7.78e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 35.74  E-value: 7.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831515778 149 EYFKKGDYPTAMRHYNEAVKRDPENAIL---YSNRAACLTKLMEFQRALDDCDTCIRL--DSKFI-KGYIRKAACLVAMR 222
Cdd:COG1729     2 ALLKAGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEAFEKLLKRypDSPKApDALLKLGLSYLELG 81

                          90       100
                  ....*....|....*....|....
gi 1831515778 223 EWSKAQRAYEDALQVDPSNEEARE 246
Cdd:COG1729    82 DYDKARATLEELIKKYPDSEAAKE 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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