CSD domain-containing protein [Caenorhabditis elegans]
cold shock domain-containing protein( domain architecture ID 10448154)
cold shock domain-containing protein similar to mammalian Y-box-binding proteins, which are DNA- and RNA-binding proteins involved in various processes, such as translational repression, RNA stabilization, mRNA splicing, DNA repair and transcription regulation
List of domain hits
Name | Accession | Description | Interval | E-value | ||
CSD | pfam00313 | 'Cold-shock' DNA-binding domain; |
64-134 | 4.02e-25 | ||
'Cold-shock' DNA-binding domain; : Pssm-ID: 278729 Cd Length: 66 Bit Score: 94.62 E-value: 4.02e-25
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Name | Accession | Description | Interval | E-value | ||
CSD | pfam00313 | 'Cold-shock' DNA-binding domain; |
64-134 | 4.02e-25 | ||
'Cold-shock' DNA-binding domain; Pssm-ID: 278729 Cd Length: 66 Bit Score: 94.62 E-value: 4.02e-25
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CSP_CDS | cd04458 | Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in ... |
65-133 | 1.77e-19 | ||
Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription. Pssm-ID: 239905 Cd Length: 65 Bit Score: 79.54 E-value: 1.77e-19
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CspC | COG1278 | Cold shock protein, CspA family [Transcription]; |
65-132 | 2.87e-18 | ||
Cold shock protein, CspA family [Transcription]; Pssm-ID: 440889 Cd Length: 67 Bit Score: 76.39 E-value: 2.87e-18
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cspE | PRK09507 | cold shock-like protein CspE; |
64-132 | 1.96e-14 | ||
cold shock-like protein CspE; Pssm-ID: 169931 Cd Length: 69 Bit Score: 66.60 E-value: 1.96e-14
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CSP | smart00357 | Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria ... |
65-134 | 2.18e-13 | ||
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. Pssm-ID: 214633 [Multi-domain] Cd Length: 64 Bit Score: 63.39 E-value: 2.18e-13
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Name | Accession | Description | Interval | E-value | ||
CSD | pfam00313 | 'Cold-shock' DNA-binding domain; |
64-134 | 4.02e-25 | ||
'Cold-shock' DNA-binding domain; Pssm-ID: 278729 Cd Length: 66 Bit Score: 94.62 E-value: 4.02e-25
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CSP_CDS | cd04458 | Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in ... |
65-133 | 1.77e-19 | ||
Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription. Pssm-ID: 239905 Cd Length: 65 Bit Score: 79.54 E-value: 1.77e-19
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CspC | COG1278 | Cold shock protein, CspA family [Transcription]; |
65-132 | 2.87e-18 | ||
Cold shock protein, CspA family [Transcription]; Pssm-ID: 440889 Cd Length: 67 Bit Score: 76.39 E-value: 2.87e-18
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cspE | PRK09507 | cold shock-like protein CspE; |
64-132 | 1.96e-14 | ||
cold shock-like protein CspE; Pssm-ID: 169931 Cd Length: 69 Bit Score: 66.60 E-value: 1.96e-14
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CSP | smart00357 | Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria ... |
65-134 | 2.18e-13 | ||
Cold shock protein domain; RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. Pssm-ID: 214633 [Multi-domain] Cd Length: 64 Bit Score: 63.39 E-value: 2.18e-13
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PRK10943 | PRK10943 | cold shock-like protein CspC; Provisional |
62-132 | 6.82e-13 | ||
cold shock-like protein CspC; Provisional Pssm-ID: 170841 Cd Length: 69 Bit Score: 62.39 E-value: 6.82e-13
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PRK09890 | PRK09890 | cold shock protein CspG; Provisional |
60-131 | 8.11e-13 | ||
cold shock protein CspG; Provisional Pssm-ID: 77467 Cd Length: 70 Bit Score: 62.09 E-value: 8.11e-13
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PRK10354 | PRK10354 | RNA chaperone/antiterminator CspA; |
60-132 | 1.51e-11 | ||
RNA chaperone/antiterminator CspA; Pssm-ID: 182402 Cd Length: 70 Bit Score: 58.83 E-value: 1.51e-11
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PRK15463 | PRK15463 | cold shock-like protein CspF; Provisional |
64-131 | 7.21e-06 | ||
cold shock-like protein CspF; Provisional Pssm-ID: 185360 Cd Length: 70 Bit Score: 42.97 E-value: 7.21e-06
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PRK09937 | PRK09937 | cold shock-like protein CspD; |
65-129 | 1.49e-04 | ||
cold shock-like protein CspD; Pssm-ID: 77494 Cd Length: 74 Bit Score: 39.33 E-value: 1.49e-04
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PRK14998 | PRK14998 | cold shock-like protein CspD; Provisional |
66-129 | 2.01e-04 | ||
cold shock-like protein CspD; Provisional Pssm-ID: 184960 Cd Length: 73 Bit Score: 38.88 E-value: 2.01e-04
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PRK15464 | PRK15464 | cold shock-like protein CspH; Provisional |
60-131 | 2.94e-04 | ||
cold shock-like protein CspH; Provisional Pssm-ID: 185361 Cd Length: 70 Bit Score: 38.54 E-value: 2.94e-04
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Blast search parameters | ||||
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