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Conserved domains on  [gi|1831519558|ref|NP_001368773|]
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VWFA domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 241-534 5.23e-31

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 133.53  E-value: 5.23e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  241 ASTSTQPAPASSPTTQPAPATSPTTQpAPATSPTTQPAPATSPTTQPAPATSPT-TQPAPATSPTTQPAPATSPTTQPAP 319
Cdd:PHA03247  2667 ARRLGRAAQASSPPQRPRRRAARPTV-GSLTSLADPPPPPPTPEPAPHALVSATpLPPGPAAARQASPALPAAPAPPAVP 2745

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  320 AT--SPTTQPAPATSPTTQPAPATSPTTQPtPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQP 397
Cdd:PHA03247  2746 AGpaTPGGPARPARPPTTAGPPAPAPPAAP-AAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASP 2824

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  398 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATS------PTTQPAPATsPTTQPTPGTSPTTQPAPATSPTTQPSPAT 471
Cdd:PHA03247  2825 AGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGgdvrrrPPSRSPAAK-PAAPARPPVRRLARPAVSRSTESFALPPD 2903

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831519558  472 NPTTQPsvsssastQPAPATSGTTQPAPATSATTQPAPATSATTQPAPAtsPTTQPAPATSAT 534
Cdd:PHA03247  2904 QPERPP--------QPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA--PTTDPAGAGEPS 2956
FhaB super family cl27105
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
 202-1058 2.53e-04

Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];


The actual alignment was detected with superfamily member COG3210:

Pssm-ID: 442443 [Multi-domain]  Cd Length: 1698  Bit Score: 45.91  E-value: 2.53e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  202 NIGNNATDITNDINNVLNITATTLGPTTTTITPTTTVVPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPAT 281
Cdd:COG3210    806 AAGTTAINVTGSGGTITINTATTGLTGTGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGSGGVA 885

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  282 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPAT 361
Cdd:COG3210    886 TSTGTANAGTLTNLGTTTNAASGNGAVLATVTATGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLSAASASDGAGD 965

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  362 SPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAT 441
Cdd:COG3210    966 TGASSAAGSSAVGTSANSAGSTGGVIAATGILVAGNSGTTASTTGGSGAIVAGGNGVTGTTGTASATGTGTAATAGGQNG 1045

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  442 SPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPAT 521
Cdd:COG3210   1046 VGVNASGISGGNAAALTASGTAGTTGGTAASNGGGGTAQASGAGTTHTLGGITNGGATGTSGGTTTSTGGVTASKVGGTT 1125

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  522 SPTTQPAPATSATTQSVPVVTTQTTMGTSPTTAGISSSPAATSPSTAVTSPSSLGTSSSPLPSSISTSALPIASSSASSS 601
Cdd:COG3210   1126 TVGATGTSTASTEAAGAGTLTGLVAVSAVAGGASSASAGDTTAVAAATTTTTGSAINGGADSAATEGTAGTDLKGGDSTG 1205

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  602 PSAASSTTPVVLSSSTIQSSSGTFPSSVASSPSTVGSTSGAASSSSYATVSTIAGSTGSTITPVPGSSSTIGSSTPSASS 681
Cdd:COG3210   1206 GSTTTIGTTNVTTTTTLTASDTGNTTATGGSSAGQTGSFVAAGSASGTGDATTGATAGAVSNGATSTVAGNAGATATGST 1285

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  682 SSSGTMSTISGSTGSTVTVVPGSSSTFASSTPIASSSSPGSTVTVAPGSSSTYGSSTPSASSSSSGTMSTNSGSTGSTVT 761
Cdd:COG3210   1286 VDIGSTSATSAGGSLDTTGNTAGANGATVGTGIGGTTATGTAVAAVNSGGVNAGGGTINTTAANTGLNGGNGATDSAAGA 1365

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  762 VAPVSSSTFGSSTPIASSSSSGSTVTVVSGSSSTYGSSTPSASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASP 841
Cdd:COG3210   1366 GSGGAAGSLAATAGAGTVLTGAGNNTGAEGTNAGRDGGVTTSGTGVGNNGGVSGTTVAGTTGSSATTGTGGTGNTTGTSV 1445

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  842 SSPGTMSTVSGPTGSTVTVVPGSSTSPAPSSSPNPSSSPASTGSTITISGSSSIIVSTVSGSTVSGSTGTSQSTLASSTA 921
Cdd:COG3210   1446 AGAGGGNADASAINTGNASSLGAGGSTAGNAVGGAVIGGTTTGGNGAGVAGATASNGGTSTGAGGTAGGTTAEVAKASLE 1525

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  922 TPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGSTASSPTGSTGSTFSVATE 1001
Cdd:COG3210   1526 GGEGTYGGSSVAEAGTGGGILGAVSGAGSEGGAAGGVTGSVGVGGTDGAGGDTGGADDTGAQAPTAGNTATLTLSLAEGT 1605

                          810       820       830       840       850
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558 1002 VTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQSTLTT 1058
Cdd:COG3210   1606 NAEYGGTTNVTSGTAGNAGATGANSNTVVTTNGGEGVLALVAGGNTTNGTTLSGAVN 1662
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 241-534 5.23e-31

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 133.53  E-value: 5.23e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  241 ASTSTQPAPASSPTTQPAPATSPTTQpAPATSPTTQPAPATSPTTQPAPATSPT-TQPAPATSPTTQPAPATSPTTQPAP 319
Cdd:PHA03247  2667 ARRLGRAAQASSPPQRPRRRAARPTV-GSLTSLADPPPPPPTPEPAPHALVSATpLPPGPAAARQASPALPAAPAPPAVP 2745

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  320 AT--SPTTQPAPATSPTTQPAPATSPTTQPtPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQP 397
Cdd:PHA03247  2746 AGpaTPGGPARPARPPTTAGPPAPAPPAAP-AAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASP 2824

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  398 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATS------PTTQPAPATsPTTQPTPGTSPTTQPAPATSPTTQPSPAT 471
Cdd:PHA03247  2825 AGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGgdvrrrPPSRSPAAK-PAAPARPPVRRLARPAVSRSTESFALPPD 2903

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831519558  472 NPTTQPsvsssastQPAPATSGTTQPAPATSATTQPAPATSATTQPAPAtsPTTQPAPATSAT 534
Cdd:PHA03247  2904 QPERPP--------QPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA--PTTDPAGAGEPS 2956
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 242-555 7.21e-17

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 86.74  E-value: 7.21e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  242 STSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT--QPAP 319
Cdd:pfam03154  156 SDSDSSAQQQILQTQPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAPHTliQQTP 235

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  320 ATSPTTQPAP--ATSPTTQPAPATSPTTQPTPATSPTTQPTPATSP------------TTQPTPATSPTTQPAPATSPTT 385
Cdd:pfam03154  236 TLHPQRLPSPhpPLQPMTQPPPPSQVSPQPLPQPSLHGQMPPMPHSlqtgpshmqhpvPPQPFPLTPQSSQSQVPPGPSP 315

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  386 Q-PAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPA------ 458
Cdd:pfam03154  316 AaPGQSQQRIHTPPSQSQLQSQQPPREQPLP-PAPLSMPHIKPPPTTPIPQLPNPQSHKHPPHLSGPSPFQMNSnlpppp 394

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  459 ---PATSPTTQPSPATNPTTQPSVSSSASTQPAPAtsgttQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATT 535
Cdd:pfam03154  395 alkPLSSLSTHHPPSAHPPPLQLMPQSQQLPPPPA-----QPPVLTQSQSLPPPAASHPPTSGLHQVPSQSPFPQHPFVP 469

                          330       340
                   ....*....|....*....|
gi 1831519558  536 QSVPVVTTQTTMGTSPTTAG 555
Cdd:pfam03154  470 GGPPPITPPSGPPTSTSSAM 489
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
298-510 2.37e-13

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 74.40  E-value: 2.37e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  298 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQP 377
Cdd:COG3469      5 STAASPTAGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATA 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  378 APATSPTTqpaPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQP 457
Cdd:COG3469     85 AAAAATST---SATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATG 161

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1831519558  458 APATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPA 510
Cdd:COG3469    162 GTTTTSTTTTTTSASTTPSATTTATATTASGATTPSATTTATTTGPPTPGLPK 214
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 238-527 6.71e-09

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 60.78  E-value: 6.71e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  238 VVPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPAT---SPTTQPAPATSPTTQ---------PAPATSPTT 305
Cdd:TIGR00927  121 ITPTTPKNNYSPTAAGTERVKEDTPATPSRALNHYISTSGRQRVksyTPKPRGEVKSSSPTQtrekvrkytPSPLGRMVN 200

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  306 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQP--TPATSPTTQPTPATSPTTQPAPATSP 383
Cdd:TIGR00927  201 SYAPSTFMTMPRSHGITPRTTVKDSEITATYKMLETNPSKRTAGKTTPTPLKgmTDNTPTFLTREVETDLLTSPRSVVEK 280

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  384 TTQPAPATSPTTQPAPATSPTTQPAPATSPTT--QPAPATSP-------TTQPAPAtspTTQPAPATSPTTQPTPGTS-P 453
Cdd:TIGR00927  281 NTLTTPRRVESNSSTNHWGLVGKNNLTTPQGTvlEHTPATSEgqvtisiMTGSSPA---ETKASTAAWKIRNPLSRTSaP 357

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  454 TTQPAPATSPTTQPSPATNPTT--QPSVSSSASTQ--------PAPATSgtTQPAPATSATTQPapatsATTQPAPATSP 523
Cdd:TIGR00927  358 AVRIASATFRGLEKNPSTAPSTpaTPRVRAVLTTQvhhcvvvkPAPAVP--TTPSPSLTTALFP-----EAPSPSPSALP 430


                   ....
gi 1831519558  524 TTQP 527
Cdd:TIGR00927  431 PGQP 434
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 262-550 5.35e-06

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 50.92  E-value: 5.35e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  262 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPaPATSPTTQPAPATSPTTQPAPAT 341
Cdd:NF033839   250 NVNTKVEIENTVHKIFADMDAVVTKFKKGLTQDTPKEPGNKKPSAPKPGMQPSPQP-EKKEVKPEPETPKPEVKPQLEKP 328

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  342 SPTTQPTPAT-SPTTQPTPAT-SPTTQPTPAT-SPTTQPAPAT-SPTTQPAPAT-SPTTQPAPAT-SPTTQPAPAT-SPT 414
Cdd:NF033839   329 KPEVKPQPEKpKPEVKPQLETpKPEVKPQPEKpKPEVKPQPEKpKPEVKPQPETpKPEVKPQPEKpKPEVKPQPEKpKPE 408

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  415 TQPAPAT-SPTTQPAPAT-SPTTQPAPAT-SPTTQPTP-GTSPTTQPAPAT-SPTTQPSPAT-NPTTQPSVSSSASTQPA 488
Cdd:NF033839   409 VKPQPEKpKPEVKPQPEKpKPEVKPQPEKpKPEVKPQPeKPKPEVKPQPETpKPEVKPQPEKpKPEVKPQPEKPKPDNSK 488

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  489 PATSGtTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVPVVTTQTTMGTS 550
Cdd:NF033839   489 PQADD-KKPSTPNNLSKDKQPSNQASTNEKATNKPKKSLPSTGSISNLALEIAGLLTLAGAT 549
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 305-434 8.56e-06

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 49.77  E-value: 8.56e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  305 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPtPATSPTTQPAPATSPT 384
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQP-EDEPVGPGAAPAAEPD 271

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  385 TQPAPAT-SPTTQPAPATSPTTQPAPATSPTTQPA-PATSPTTQPAPATSPT 434
Cdd:NF040712   272 EATRDAGePPAPGAAETPEAAEPPAPAPAAPAAPAaPEAEEPARPEPPPAPK 323
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 295-424 9.51e-06

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 49.38  E-value: 9.51e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  295 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPtPATSPTTQPTPATSPT 374
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQP-EDEPVGPGAAPAAEPD 271

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  375 TQPAPAT-SPTTQPAPATSPTTQPAPATSPTTQPA-PATSPTTQPAPATSPT 424
Cdd:NF040712   272 EATRDAGePPAPGAAETPEAAEPPAPAPAAPAAPAaPEAEEPARPEPPPAPK 323
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 285-414 1.00e-05

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 49.38  E-value: 1.00e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  285 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPtPATSPTTQPTPATSPT 364
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQP-EDEPVGPGAAPAAEPD 271

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  365 TQPTPAT-SPTTQPAPATSPTTQPAPATSPTTQPA-PATSPTTQPAPATSPT 414
Cdd:NF040712   272 EATRDAGePPAPGAAETPEAAEPPAPAPAAPAAPAaPEAEEPARPEPPPAPK 323
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 315-444 1.44e-05

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 49.00  E-value: 1.44e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  315 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPaPATSPTTQPAPATSPT 394
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQP-EDEPVGPGAAPAAEPD 271

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  395 TQPAPAT-SPTTQPAPATSPTTQPAPATSPTTQPA-PATSPTTQPAPATSPT 444
Cdd:NF040712   272 EATRDAGePPAPGAAETPEAAEPPAPAPAAPAAPAaPEAEEPARPEPPPAPK 323
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 275-404 1.44e-05

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 49.00  E-value: 1.44e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  275 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPTPATSPT 354
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLA-SARRRRAGVEQPEDEPVGPGAAPAAEPD 271

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  355 TQPTPAT-SPTTQPTPATSPTTQPAPATSPTTQPA-PATSPTTQPAPATSPT 404
Cdd:NF040712   272 EATRDAGePPAPGAAETPEAAEPPAPAPAAPAAPAaPEAEEPARPEPPPAPK 323
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 243-377 2.63e-05

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 48.22  E-value: 2.63e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  243 TSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAPATS 322
Cdd:NF040712   191 DFGRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLA-SARRRRAGVEQPEDEPVGPGAAPAAE 269

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  323 PTTQPAPATSPTTQPAPATSPTTQPT-PATSPTTQPTpATSPTTQPTPATSPTTQP 377
Cdd:NF040712   270 PDEATRDAGEPPAPGAAETPEAAEPPaPAPAAPAAPA-APEAEEPARPEPPPAPKP 324
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 265-413 2.87e-05

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 47.84  E-value: 2.87e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  265 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATspttqPAPATSPT 344
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEP-----VGPGAAPA 267

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  345 TQPTPATSPTTQPtPATSPTTQPTPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAPATSP 413
Cdd:NF040712   268 AEPDEATRDAGEP-PAPGAAETPEAAEPPAPAPAAPAAPAA-PEAEEPARPEPPPAPKPKRRRRRASVP 334
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 255-403 5.07e-05

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 47.07  E-value: 5.07e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  255 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAPATSPT 334
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLA-SARRRRAGVEQPEDEPVGPGAAPAAEPD 271

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  335 TQPAPATsPTTQPTPATSPTTQPTPATSPTtqptpATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP 403
Cdd:NF040712   272 EATRDAG-EPPAPGAAETPEAAEPPAPAPA-----APAAPAAPEAEEPARPEPPPAPKPKRRRRRASVP 334
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 325-457 5.53e-05

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 47.07  E-value: 5.53e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  325 TQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTqPAPATSPTTQPAPATSPTTQPAPATSPT 404
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLA-SARRRRAGVEQPEDEPVGPGAAPAAEPD 271

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  405 TQPAPAT-SPTTQPAPATSPTTQPAPATSPTTQPApATSPTTQPTPGTSPTTQP 457
Cdd:NF040712   272 EATRDAGePPAPGAAETPEAAEPPAPAPAAPAAPA-APEAEEPARPEPPPAPKP 324
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 385-527 9.02e-05

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 46.30  E-value: 9.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  385 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTspttqPAPATSPT 464
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEP-----VGPGAAPA 267

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831519558  465 TQPSPATNPTTQPSVSSSASTQPAPATsgttqPAPATSATTQPApATSATTQPAPATSPTTQP 527
Cdd:NF040712   268 AEPDEATRDAGEPPAPGAAETPEAAEP-----PAPAPAAPAAPA-APEAEEPARPEPPPAPKP 324
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 250-429 9.71e-05

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 46.69  E-value: 9.71e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  250 ASSPTTQPAPATSPTTQPAPATSPTTQPAPAT---SPTTQPAPAT-SPTTQPAPAT-SPTTQPAPAT-SPTTQPAPAT-S 322
Cdd:NF033839   294 APKPGMQPSPQPEKKEVKPEPETPKPEVKPQLekpKPEVKPQPEKpKPEVKPQLETpKPEVKPQPEKpKPEVKPQPEKpK 373

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  323 PTTQPAPAT-SPTTQPAPAT-SPTTQPTPAT-SPTTQPTPAT-SPTTQPTPAT-SPTTQPAPAT-SPTTQPAPAT-SPTT 395
Cdd:NF033839   374 PEVKPQPETpKPEVKPQPEKpKPEVKPQPEKpKPEVKPQPEKpKPEVKPQPEKpKPEVKPQPEKpKPEVKPQPEKpKPEV 453

                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 1831519558  396 QPAPAT-SPTTQPAPAT-SPTTQPAPATSPTTQPAP 429
Cdd:NF033839   454 KPQPETpKPEVKPQPEKpKPEVKPQPEKPKPDNSKP 489
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 277-359 1.01e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 46.53  E-value: 1.01e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  277 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ-PAPATSPTTQPAPATSPTTQPTPATSPTT 355
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGsLAPPPPPPPGPAGAAPGAALPVRVPAPPA 98


                   ....
gi 1831519558  356 QPTP 359
Cdd:NF041121    99 LPNP 102
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 255-340 1.18e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 46.15  E-value: 1.18e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  255 TQPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPT 334
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPV 91


                   ....*.
gi 1831519558  335 TQPAPA 340
Cdd:NF041121    92 RVPAPP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 287-369 1.21e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 46.15  E-value: 1.21e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  287 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ-PAPATSPTTQPTPATSPTTQPTPATSPTT 365
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGsLAPPPPPPPGPAGAAPGAALPVRVPAPPA 98


                   ....
gi 1831519558  366 QPTP 369
Cdd:NF041121    99 LPNP 102
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 295-380 1.25e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 46.15  E-value: 1.25e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  295 TQPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTqPTPATSPTTQPTPATSPT 374
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPV 91


                   ....*.
gi 1831519558  375 TQPAPA 380
Cdd:NF041121    92 RVPAPP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 243-329 1.42e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 46.15  E-value: 1.42e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  243 TSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ-PAPATSPTTQPAPATSPTTQPAPAT 321
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGsLAPPPPPPPGPAGAAPGAALPVRVP 94


                   ....*...
gi 1831519558  322 SPTTQPAP 329
Cdd:NF041121    95 APPALPNP 102
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 337-419 1.73e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 45.76  E-value: 1.73e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  337 PAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQ-PAPATSPTTQPAPATSPTTQPAPATSPTT 415
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGsLAPPPPPPPGPAGAAPGAALPVRVPAPPA 98


                   ....
gi 1831519558  416 QPAP 419
Cdd:NF041121    99 LPNP 102
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 267-349 1.76e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 45.76  E-value: 1.76e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  267 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ-PAPATSPTTQPAPATSPTTQPAPATSPTT 345
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGsLAPPPPPPPGPAGAAPGAALPVRVPAPPA 98


                   ....
gi 1831519558  346 QPTP 349
Cdd:NF041121    99 LPNP 102
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 305-390 2.12e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 45.38  E-value: 2.12e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  305 TQPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTqPTPATSPTTQPAPATSPT 384
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPV 91


                   ....*.
gi 1831519558  385 TQPAPA 390
Cdd:NF041121    92 RVPAPP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 385-470 2.12e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 45.38  E-value: 2.12e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  385 TQPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPTPGTSPTTQPAPATSPT 464
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPV 91


                   ....*.
gi 1831519558  465 TQPSPA 470
Cdd:NF041121    92 RVPAPP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 257-339 2.12e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 45.38  E-value: 2.12e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  257 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ-PAPATSPTTQPAPATSPTTQPAPATSPTT 335
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGsLAPPPPPPPGPAGAAPGAALPVRVPAPPA 98


                   ....
gi 1831519558  336 QPAP 339
Cdd:NF041121    99 LPNP 102
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 245-330 2.20e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 45.38  E-value: 2.20e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  245 TQPAPASSPTTQPAPATSPttQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPT 324
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPV 91


                   ....*.
gi 1831519558  325 TQPAPA 330
Cdd:NF041121    92 RVPAPP 97
FhaB COG3210
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
 202-1058 2.53e-04

Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442443 [Multi-domain]  Cd Length: 1698  Bit Score: 45.91  E-value: 2.53e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  202 NIGNNATDITNDINNVLNITATTLGPTTTTITPTTTVVPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPAT 281
Cdd:COG3210    806 AAGTTAINVTGSGGTITINTATTGLTGTGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGSGGVA 885

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  282 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPAT 361
Cdd:COG3210    886 TSTGTANAGTLTNLGTTTNAASGNGAVLATVTATGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLSAASASDGAGD 965

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  362 SPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAT 441
Cdd:COG3210    966 TGASSAAGSSAVGTSANSAGSTGGVIAATGILVAGNSGTTASTTGGSGAIVAGGNGVTGTTGTASATGTGTAATAGGQNG 1045

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  442 SPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPAT 521
Cdd:COG3210   1046 VGVNASGISGGNAAALTASGTAGTTGGTAASNGGGGTAQASGAGTTHTLGGITNGGATGTSGGTTTSTGGVTASKVGGTT 1125

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  522 SPTTQPAPATSATTQSVPVVTTQTTMGTSPTTAGISSSPAATSPSTAVTSPSSLGTSSSPLPSSISTSALPIASSSASSS 601
Cdd:COG3210   1126 TVGATGTSTASTEAAGAGTLTGLVAVSAVAGGASSASAGDTTAVAAATTTTTGSAINGGADSAATEGTAGTDLKGGDSTG 1205

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  602 PSAASSTTPVVLSSSTIQSSSGTFPSSVASSPSTVGSTSGAASSSSYATVSTIAGSTGSTITPVPGSSSTIGSSTPSASS 681
Cdd:COG3210   1206 GSTTTIGTTNVTTTTTLTASDTGNTTATGGSSAGQTGSFVAAGSASGTGDATTGATAGAVSNGATSTVAGNAGATATGST 1285

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  682 SSSGTMSTISGSTGSTVTVVPGSSSTFASSTPIASSSSPGSTVTVAPGSSSTYGSSTPSASSSSSGTMSTNSGSTGSTVT 761
Cdd:COG3210   1286 VDIGSTSATSAGGSLDTTGNTAGANGATVGTGIGGTTATGTAVAAVNSGGVNAGGGTINTTAANTGLNGGNGATDSAAGA 1365

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  762 VAPVSSSTFGSSTPIASSSSSGSTVTVVSGSSSTYGSSTPSASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASP 841
Cdd:COG3210   1366 GSGGAAGSLAATAGAGTVLTGAGNNTGAEGTNAGRDGGVTTSGTGVGNNGGVSGTTVAGTTGSSATTGTGGTGNTTGTSV 1445

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  842 SSPGTMSTVSGPTGSTVTVVPGSSTSPAPSSSPNPSSSPASTGSTITISGSSSIIVSTVSGSTVSGSTGTSQSTLASSTA 921
Cdd:COG3210   1446 AGAGGGNADASAINTGNASSLGAGGSTAGNAVGGAVIGGTTTGGNGAGVAGATASNGGTSTGAGGTAGGTTAEVAKASLE 1525

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  922 TPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGSTASSPTGSTGSTFSVATE 1001
Cdd:COG3210   1526 GGEGTYGGSSVAEAGTGGGILGAVSGAGSEGGAAGGVTGSVGVGGTDGAGGDTGGADDTGAQAPTAGNTATLTLSLAEGT 1605

                          810       820       830       840       850
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558 1002 VTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQSTLTT 1058
Cdd:COG3210   1606 NAEYGGTTNVTSGTAGNAGATGANSNTVVTTNGGEGVLALVAGGNTTNGTTLSGAVN 1662
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 339-464 2.60e-04

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 44.76  E-value: 2.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  339 PATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQP-APATSPTTQPAPATSPTTQPAPATSPTTQP 417
Cdd:NF040712   195 PLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLAsARRRRAGVEQPEDEPVGPGAAPAAEPDEAT 274

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1831519558  418 APAT-SPTTQPAPATSPTTQPAPATSPTTQPT-PGTSPTTQPAPATSPT 464
Cdd:NF040712   275 RDAGePPAPGAAETPEAAEPPAPAPAAPAAPAaPEAEEPARPEPPPAPK 323
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 285-370 2.77e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.99  E-value: 2.77e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  285 TQPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPTPATSPTTQPTPATSPT 364
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPV 91


                   ....*.
gi 1831519558  365 TQPTPA 370
Cdd:NF041121    92 RVPAPP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 375-460 2.79e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.99  E-value: 2.79e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  375 TQPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPTPGTSPT 454
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPV 91


                   ....*.
gi 1831519558  455 TQPAPA 460
Cdd:NF041121    92 RVPAPP 97
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 365-502 2.83e-04

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 44.76  E-value: 2.83e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  365 TQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAPATSPT 444
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLA-SARRRRAGVEQPEDEPVGPGAAPAAEPD 271

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  445 TQPTPgtsPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATS 502
Cdd:NF040712   272 EATRD---AGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKPKR 326
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 405-537 3.71e-04

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 44.37  E-value: 3.71e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  405 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSAS 484
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDE 272

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  485 TQPAPATSGTTQPAPATSATTQPAPATSATTQPA-PATSPTTQPAPATSATTQS 537
Cdd:NF040712   273 ATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAaPEAEEPARPEPPPAPKPKR 326
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 357-439 4.33e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.61  E-value: 4.33e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  357 PTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ-PAPATSPTTQPAPATSPTTQPAPATSPTT 435
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGsLAPPPPPPPGPAGAAPGAALPVRVPAPPA 98


                   ....
gi 1831519558  436 QPAP 439
Cdd:NF041121    99 LPNP 102
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 315-400 4.37e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.61  E-value: 4.37e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  315 TQPAPATSPTTQPAPATSPttQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTqPAPATSPTTQPAPATSPT 394
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPV 91


                   ....*.
gi 1831519558  395 TQPAPA 400
Cdd:NF041121    92 RVPAPP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 377-459 4.40e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.61  E-value: 4.40e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  377 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ-PAPATSPTTQPAPATSPTTQPTPGTSPTT 455
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGsLAPPPPPPPGPAGAAPGAALPVRVPAPPA 98


                   ....
gi 1831519558  456 QPAP 459
Cdd:NF041121    99 LPNP 102
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 367-449 5.10e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.22  E-value: 5.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  367 PTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ-PAPATSPTTQPAPATSPTTQPAPATSPTT 445
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGsLAPPPPPPPGPAGAAPGAALPVRVPAPPA 98


                   ....
gi 1831519558  446 QPTP 449
Cdd:NF041121    99 LPNP 102
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 325-410 5.27e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.22  E-value: 5.27e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  325 TQPAPATSPTTQPAPATSPttQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPT 404
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPV 91


                   ....*.
gi 1831519558  405 TQPAPA 410
Cdd:NF041121    92 RVPAPP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 327-409 5.60e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.22  E-value: 5.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  327 PAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQ-PAPATSPTTQPAPATSPTTQPAPATSPTT 405
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGsLAPPPPPPPGPAGAAPGAALPVRVPAPPA 98


                   ....
gi 1831519558  406 QPAP 409
Cdd:NF041121    99 LPNP 102
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 345-477 5.94e-04

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 43.60  E-value: 5.94e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  345 TQPTP--ATSPTTQPTPATSPTTQPTPAtsPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAPATS 422
Cdd:NF040712   193 GRPLRplATVPRLAREPADARPEEVEPA--PAAEGAPATDSDPAEAGTPDDLA-SARRRRAGVEQPEDEPVGPGAAPAAE 269

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  423 PTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQP 477
Cdd:NF040712   270 PDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKP 324
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 328-479 5.95e-04

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 44.09  E-value: 5.95e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  328 APATSPTTQPAPATSpTTQPTPATSPTTQPTPATSPTTQPTPATspttQPAPATSPTTQPAPATSPTTQPAPATSPTTQP 407
Cdd:cd23959    100 AMAPDESLGPFRAAR-VPNPFSASSSTQRETHKTAQVAPPKAEP----QTAPVTPFGQLPMFGQHPPPAKPLPAAAAAQQ 174

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  408 APAtSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSV 479
Cdd:cd23959    175 SSA-SPGEVASPFASGTVSASPFATATDTAPSSGAPDGFPAEASAPSPFAAPASAASFPAAPVANGEAATPT 245
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 238-357 7.26e-04

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 43.60  E-value: 7.26e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  238 VVPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQ---PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAT-SP 313
Cdd:NF040712   202 VPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDdlaSARRRRAGVEQPEDEPVGPGAAPAAEPDEATRDAGePP 281

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1831519558  314 TTQPAPATSPTTQPAPATSPTTQPApATSPTTQPTPATSPTTQP 357
Cdd:NF040712   282 APGAAETPEAAEPPAPAPAAPAAPA-APEAEEPARPEPPPAPKP 324
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 240-320 8.17e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 43.45  E-value: 8.17e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAP 319
Cdd:NF041121    18 AAAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPVRVPAP 96


                   .
gi 1831519558  320 A 320
Cdd:NF041121    97 P 97
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 375-523 8.35e-04

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 43.22  E-value: 8.35e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  375 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPTPGTSPT 454
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLA-SARRRRAGVEQPEDEPVGPGAAPAAEPD 271

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  455 TQPAPATSPTTQPSPATNPTTQPsvsssastqPAPATS---GTTQPAPATSATTQPAPATSATTQPAPATSP 523
Cdd:NF040712   272 EATRDAGEPPAPGAAETPEAAEP---------PAPAPAapaAPAAPEAEEPARPEPPPAPKPKRRRRRASVP 334
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 355-440 9.06e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 43.45  E-value: 9.06e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  355 TQPTPATSPTTQPTPATSPttQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPT 434
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPV 91


                   ....*.
gi 1831519558  435 TQPAPA 440
Cdd:NF041121    92 RVPAPP 97
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 355-491 1.00e-03

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 43.22  E-value: 1.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  355 TQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAPATSPT 434
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLA-SARRRRAGVEQPEDEPVGPGAAPAAEPD 271

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  435 TQPAPATsptTQPTPGTSPTTQPAPATSPttQPSPATNPTTqPSVSSSASTQPAPAT 491
Cdd:NF040712   272 EATRDAG---EPPAPGAAETPEAAEPPAP--APAAPAAPAA-PEAEEPARPEPPPAP 322
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 347-430 1.57e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 42.68  E-value: 1.57e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  347 PTPATSPTTQPTPATSPTTQPTPATSPttqpAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQ 426
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPP----SPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPVRV 93


                   ....
gi 1831519558  427 PAPA 430
Cdd:NF041121    94 PAPP 97
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 365-474 2.02e-03

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 42.78  E-value: 2.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  365 TQPTPATSPTTQPAPATSPTTQPAPATSPTTqpaPATSPTTQPAPATSPTTQPAPATspttQPAPATSPTTQPAPATSPT 444
Cdd:NF033875    38 TDNVQAAELDTQPGTTTVQPDNPDPQSGSET---PKTAVSEEATVQKDTTSQPTKVE----EVASEKNGAEQSSATPNDT 110

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1831519558  445 T---QPTPGTSPTTQPAPATSPTTQPSPATNPT 474
Cdd:NF033875   111 TnaqQPTVGAEKSAQEQPVVSPETTNEPLGQPT 143
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 315-430 2.23e-03

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 42.78  E-value: 2.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  315 TQPAPATSPTTQPAPATSPTTQPAPATSPTTqptPATSPTTQPTPATSPTTQPTPATspttQPAPATSPTTQPAPATSPT 394
Cdd:NF033875    38 TDNVQAAELDTQPGTTTVQPDNPDPQSGSET---PKTAVSEEATVQKDTTSQPTKVE----EVASEKNGAEQSSATPNDT 110

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1831519558  395 T---QPAPATSPTTQPAPATSPTTQPAPATSPtTQPAPA 430
Cdd:NF033875   111 TnaqQPTVGAEKSAQEQPVVSPETTNEPLGQP-TEVAPA 148
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 295-410 2.43e-03

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 42.39  E-value: 2.43e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  295 TQPAPATSPTTQPAPATSPTTQPAPATSPTTqpaPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSpT 374
Cdd:NF033875    38 TDNVQAAELDTQPGTTTVQPDNPDPQSGSET---PKTAVSEEATVQKDTTSQPTKVEEVASEKNGAEQSSATPNDTTN-A 113

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1831519558  375 TQPAPATSPTTQPAPATSPTTQPAPATSPtTQPAPA 410
Cdd:NF033875   114 QQPTVGAEKSAQEQPVVSPETTNEPLGQP-TEVAPA 148
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 285-400 2.43e-03

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 42.39  E-value: 2.43e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  285 TQPAPATSPTTQPAPATSPTTQPAPATSPTTqpaPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSpT 364
Cdd:NF033875    38 TDNVQAAELDTQPGTTTVQPDNPDPQSGSET---PKTAVSEEATVQKDTTSQPTKVEEVASEKNGAEQSSATPNDTTN-A 113

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1831519558  365 TQPTPATSPTTQPAPATSPTTQPAPATSPtTQPAPA 400
Cdd:NF033875   114 QQPTVGAEKSAQEQPVVSPETTNEPLGQP-TEVAPA 148
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 395-541 2.49e-03

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 42.39  E-value: 2.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  395 TQPAPATSPTTQPAPATSPTTQPAPATSPTTqpaPATSPTTQPAPATSPTTQPTpgtsPTTQPAPATSPTTQPSPATNPT 474
Cdd:NF033875    38 TDNVQAAELDTQPGTTTVQPDNPDPQSGSET---PKTAVSEEATVQKDTTSQPT----KVEEVASEKNGAEQSSATPNDT 110

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  475 T---QPSVSSSASTQPAPATSGTTQPAPaTSATTQPAPA----TSATTQPAPATSPTTQPAPATSATTQSVPVV 541
Cdd:NF033875   111 TnaqQPTVGAEKSAQEQPVVSPETTNEP-LGQPTEVAPAeneaNKSTSIPKEFETPDVDKAVDEAKKDPNITVV 183
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 275-390 2.85e-03

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 42.39  E-value: 2.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  275 TQPAPATSPTTQPAPATSPTTQPAPATSPTTqpaPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSpT 354
Cdd:NF033875    38 TDNVQAAELDTQPGTTTVQPDNPDPQSGSET---PKTAVSEEATVQKDTTSQPTKVEEVASEKNGAEQSSATPNDTTN-A 113

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1831519558  355 TQPTPATSPTTQPTPATSPTTQPAPATSPtTQPAPA 390
Cdd:NF033875   114 QQPTVGAEKSAQEQPVVSPETTNEPLGQP-TEVAPA 148
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 340-429 3.06e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 41.91  E-value: 3.06e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  340 ATSPTTQPTPATSPTTQPTPATSPttQPTPATSPTTQPAPATSPTTQPAPATSPtTQPAPATSPTTQPAPATSPTTQPAP 419
Cdd:NF041121    16 GRAAAPPSPEGPAPTAASQPATPP--PPAAPPSPPGDPPEPPAPEPAPLPAPYP-GSLAPPPPPPPGPAGAAPGAALPVR 92

                           90
                   ....*....|
gi 1831519558  420 ATSPTTQPAP 429
Cdd:NF041121    93 VPAPPALPNP 102
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 325-448 3.21e-03

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 42.01  E-value: 3.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  325 TQPAPATSPTTQPAPATSPTTQPTPATSPTTqptPATSPTTQPTPATSPTTQPAPAtsptTQPAPATSPTTQPAPATSPT 404
Cdd:NF033875    38 TDNVQAAELDTQPGTTTVQPDNPDPQSGSET---PKTAVSEEATVQKDTTSQPTKV----EEVASEKNGAEQSSATPNDT 110

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1831519558  405 T---QPAPATSPTTQPAPATSPTTQPAPATSPtTQPAPATSPTTQPT 448
Cdd:NF033875   111 TnaqQPTVGAEKSAQEQPVVSPETTNEPLGQP-TEVAPAENEANKST 156
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 265-380 3.61e-03

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 42.01  E-value: 3.61e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  265 TQPAPATSPTTQPAPATSPTTQPAPATSPTTqpaPATSPTTQPAPATSPTTQPAPATspttQPAPATSPTTQPAPATSPT 344
Cdd:NF033875    38 TDNVQAAELDTQPGTTTVQPDNPDPQSGSET---PKTAVSEEATVQKDTTSQPTKVE----EVASEKNGAEQSSATPNDT 110

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1831519558  345 T---QPTPATSPTTQPTPATSPTTQPTPATSPtTQPAPA 380
Cdd:NF033875   111 TnaqQPTVGAEKSAQEQPVVSPETTNEPLGQP-TEVAPA 148
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 395-477 4.95e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 41.14  E-value: 4.95e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  395 TQPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGtspttQPAPATSPTTQPSPATNPT 474
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPG-----SLAPPPPPPPGPAGAAPGA 87


                   ...
gi 1831519558  475 TQP 477
Cdd:NF041121    88 ALP 90
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 415-500 6.13e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 40.76  E-value: 6.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  415 TQPAPATSPTTQPAPATSPttQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPttQPSVSSSASTQPAPATSGT 494
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLA--PPPPPPPGPAGAAPGAALP 90


                   ....*..
gi 1831519558  495 TQ-PAPA 500
Cdd:NF041121    91 VRvPAPP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 425-510 8.72e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 40.37  E-value: 8.72e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  425 TQPAPATSPTTQPAPATSPttQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSAStqPAPATSGTTQPAPATSAT 504
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAP--PPPPPPGPAGAAPGAALP 90


                   ....*..
gi 1831519558  505 TQ-PAPA 510
Cdd:NF041121    91 VRvPAPP 97
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 241-534 5.23e-31

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 133.53  E-value: 5.23e-31
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  241 ASTSTQPAPASSPTTQPAPATSPTTQpAPATSPTTQPAPATSPTTQPAPATSPT-TQPAPATSPTTQPAPATSPTTQPAP 319
Cdd:PHA03247  2667 ARRLGRAAQASSPPQRPRRRAARPTV-GSLTSLADPPPPPPTPEPAPHALVSATpLPPGPAAARQASPALPAAPAPPAVP 2745

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  320 AT--SPTTQPAPATSPTTQPAPATSPTTQPtPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQP 397
Cdd:PHA03247  2746 AGpaTPGGPARPARPPTTAGPPAPAPPAAP-AAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASP 2824

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  398 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATS------PTTQPAPATsPTTQPTPGTSPTTQPAPATSPTTQPSPAT 471
Cdd:PHA03247  2825 AGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGgdvrrrPPSRSPAAK-PAAPARPPVRRLARPAVSRSTESFALPPD 2903

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831519558  472 NPTTQPsvsssastQPAPATSGTTQPAPATSATTQPAPATSATTQPAPAtsPTTQPAPATSAT 534
Cdd:PHA03247  2904 QPERPP--------QPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA--PTTDPAGAGEPS 2956
PHA03247 PHA03247
large tegument protein UL36; Provisional
 241-543 1.76e-30

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 131.98  E-value: 1.76e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  241 ASTSTQPAPASSPTTQPAPATSPT-TQPAPATSPTTQPAPATSPTTQPAPAT--SPTTQPAPATSPTTQPAPATSPTTQP 317
Cdd:PHA03247  2696 TSLADPPPPPPTPEPAPHALVSATpLPPGPAAARQASPALPAAPAPPAVPAGpaTPGGPARPARPPTTAGPPAPAPPAAP 2775

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  318 ApATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQP 397
Cdd:PHA03247  2776 A-AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGG 2854

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  398 APATS------PTTQPAPATsPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPG--TSPTTQPAPATSPTTQPSP 469
Cdd:PHA03247  2855 SVAPGgdvrrrPPSRSPAAK-PAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQapPPPQPQPQPPPPPQPQPPP 2933

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  470 ATNPTTQPSVSSSASTQPAPATSGTTqPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVPVVTT 543
Cdd:PHA03247  2934 PPPPRPQPPLAPTTDPAGAGEPSGAV-PQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSS 3006
PHA03247 PHA03247
large tegument protein UL36; Provisional
 240-554 3.68e-29

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 127.36  E-value: 3.68e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQpAPATSPTTQPAP 319
Cdd:PHA03247  2626 PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTV-GSLTSLADPPPP 2704

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  320 ATSPTTQPAPATSPT-TQPAPATSPTTQPTPATSPTTQPTPAT--SPTTQPTPATSPTT----QPAPATSPTTQPAPATs 392
Cdd:PHA03247  2705 PPTPEPAPHALVSATpLPPGPAAARQASPALPAAPAPPAVPAGpaTPGGPARPARPPTTagppAPAPPAAPAAGPPRRL- 2783

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  393 pttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATS---------- 462
Cdd:PHA03247  2784 ----TRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSlplggsvapg 2859

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  463 ------PTTQPSPATNPT-TQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATT 535
Cdd:PHA03247  2860 gdvrrrPPSRSPAAKPAApARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP 2939

                          330
                   ....*....|....*....
gi 1831519558  536 QSVPVVTTQTTMGTSPTTA 554
Cdd:PHA03247  2940 QPPLAPTTDPAGAGEPSGA 2958
PHA03247 PHA03247
large tegument protein UL36; Provisional
 240-555 1.59e-27

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 122.35  E-value: 1.59e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT-----------TQPA 308
Cdd:PHA03247  2595 SARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGrvsrprrarrlGRAA 2674

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  309 PATSPTTQPAPATSPTTQpAPATSPTTQPAPATSPTTQPTPATSPTTQPT-PATSPTTQPTPATSPTTQPAPAT--SPTT 385
Cdd:PHA03247  2675 QASSPPQRPRRRAARPTV-GSLTSLADPPPPPPTPEPAPHALVSATPLPPgPAAARQASPALPAAPAPPAVPAGpaTPGG 2753

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  386 QPAPATSPTTQPAPATSPTTQPApATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTT 465
Cdd:PHA03247  2754 PARPARPPTTAGPPAPAPPAAPA-AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPT 2832

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  466 QPSPATNPTTQPSVSSSASTQPAPATSG------TTQPAPATSAT---------TQPAPATSATTQPAPATSPTTQPAPA 530
Cdd:PHA03247  2833 SAQPTAPPPPPGPPPPSLPLGGSVAPGGdvrrrpPSRSPAAKPAAparppvrrlARPAVSRSTESFALPPDQPERPPQPQ 2912

                          330       340
                   ....*....|....*....|....*
gi 1831519558  531 TSATTQSVPVVTTQTTMGTSPTTAG 555
Cdd:PHA03247  2913 APPPPQPQPQPPPPPQPQPPPPPPP 2937
PHA03247 PHA03247
large tegument protein UL36; Provisional
 240-519 2.70e-27

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 121.58  E-value: 2.70e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQ-PAPATSPTTQPAPATSPT-TQPAPATSPTTQPAPATSPTTQPAPATSPTTQP 317
Cdd:PHA03247  2735 LPAAPAPPAVPAGPATPGGPARPARPPtTAGPPAPAPPAAPAAGPPrRLTRPAVASLSESRESLPSPWDPADPPAAVLAP 2814

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  318 APATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATS------PTTQPTPATsPTTQPAPATSPTTQPAPAT 391
Cdd:PHA03247  2815 AAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGgdvrrrPPSRSPAAK-PAAPARPPVRRLARPAVSR 2893

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  392 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPttQPAPATSPTTQPSPAT 471
Cdd:PHA03247  2894 STESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP--SGAVPQPWLGALVPGR 2971

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*...
gi 1831519558  472 NPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAP 519
Cdd:PHA03247  2972 VAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHEETDP 3019
PHA03247 PHA03247
large tegument protein UL36; Provisional
 250-551 7.44e-27

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 120.04  E-value: 7.44e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  250 ASSPTTQPAPATSPTTQPAPA--TSPTTQPAPATSPTTQPAPATSPTTQPAPATsPTTQPAPATSPTTQPAPATSPTTQP 327
Cdd:PHA03247  2544 ASDDAGDPPPPLPPAAPPAAPdrSVPPPRPAPRPSEPAVTSRARRPDAPPQSAR-PRAPVDDRGDPRGPAPPSPLPPDTH 2622

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  328 APATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPT-----------TQPTPATSPTTQPAPATSPTTQpAPATSPTTQ 396
Cdd:PHA03247  2623 APDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGrvsrprrarrlGRAAQASSPPQRPRRRAARPTV-GSLTSLADP 2701

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  397 PAPATSPTTQPAPATSPT-TQPAPATSPTTQPAPATSPTTQPAPAT--SPTTQPTPGTSPTT----QPAPATSPTTQPSP 469
Cdd:PHA03247  2702 PPPPPTPEPAPHALVSATpLPPGPAAARQASPALPAAPAPPAVPAGpaTPGGPARPARPPTTagppAPAPPAAPAAGPPR 2781

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  470 ATNPTTQPSVSSSASTQPAPatsgtTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVPVVTTQTTMGT 549
Cdd:PHA03247  2782 RLTRPAVASLSESRESLPSP-----WDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSV 2856


                   ..
gi 1831519558  550 SP 551
Cdd:PHA03247  2857 AP 2858
PHA03247 PHA03247
large tegument protein UL36; Provisional
 240-491 9.67e-25

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 113.11  E-value: 9.67e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPA---PATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ 316
Cdd:PHA03247  2754 PARPARPPTTAGPPAPAPPaapAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTS 2833

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  317 PAPATSPTTQPAPATS----------------PTTQPAPATsPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPA 380
Cdd:PHA03247  2834 AQPTAPPPPPGPPPPSlplggsvapggdvrrrPPSRSPAAK-PAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQ 2912

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  381 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPA 460
Cdd:PHA03247  2913 APPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASS 2992

                          250       260       270
                   ....*....|....*....|....*....|.
gi 1831519558  461 TSPTTQPSPATNPTTQPSVSSSASTQPAPAT 491
Cdd:PHA03247  2993 TPPLTGHSLSRVSSWASSLALHEETDPPPVS 3023
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 238-540 2.96e-24

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 110.46  E-value: 2.96e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  238 VVPASTSTQPAPASSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAtSPTTQP 317
Cdd:PRK07764   385 LGVAGGAGAPAAAAPSAAAAAPAAAP---APAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAP-SPPPAA 460

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  318 APATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTP--------------------ATSPTTQP 377
Cdd:PRK07764   461 APSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLrerwpeilaavpkrsrktwaILLPEATV 540

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  378 APATSPTTQPAPATSP---------------------------------TTQPAPATSPTTQPAPATSPTTQPAPATSP- 423
Cdd:PRK07764   541 LGVRGDTLVLGFSTGGlarrfaspgnaevlvtalaeelggdwqveavvgPAPGAAGGEGPPAPASSGPPEEAARPAAPAa 620

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  424 TTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPttqPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSA 503
Cdd:PRK07764   621 PAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVP---DASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAA 697

                          330       340       350
                   ....*....|....*....|....*....|....*..
gi 1831519558  504 TTQPAPATSATTQPAPATSPTTQPAPATSATTQSVPV 540
Cdd:PRK07764   698 PAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPA 734
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 240-542 7.81e-24

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 108.92  E-value: 7.81e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATS-PTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAtSPTTQPAPATSPTTQPA 318
Cdd:PRK07764   393 APAAAAPSAAAAAPAAAPAPAAAaPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAP-SPPPAAAPSAQPAPAPA 471

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  319 PATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTP--------------------------------------- 359
Cdd:PRK07764   472 AAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLrerwpeilaavpkrsrktwaillpeatvlgvrgdtlvlg 551

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  360 --------------------------------------------ATSPTTQPTPATSPTTQPAPATSP-TTQPAPATSPT 394
Cdd:PRK07764   552 fstgglarrfaspgnaevlvtalaeelggdwqveavvgpapgaaGGEGPPAPASSGPPEEAARPAAPAaPAAPAAPAPAG 631

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  395 TQPAPATSPTTQPAPATSPTTQPAPATSPTT------QPAPATSPT-TQPAPATSPTTQPTPGTSPTTQPAPATSPTTQP 467
Cdd:PRK07764   632 AAAAPAEASAAPAPGVAAPEHHPKHVAVPDAsdggdgWPAKAGGAApAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPA 711

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  468 SPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPAtSATTQPAPATSPTTQPAPATSATTQSVPVVT 542
Cdd:PRK07764   712 GQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGA-PAQPPPPPAPAPAAAPAAAPPPSPPSEEEEM 785
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
244-454 2.03e-20

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 97.64  E-value: 2.03e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  244 STQPAPASSPTTQPAPATSPTT--QPAPATSPTTQPAPATSPTTQPAPATSPTT-QPAPATSPTTQPAPATSPTTQPAPA 320
Cdd:PRK12323   372 AGPATAAAAPVAQPAPAAAAPAaaAPAPAAPPAAPAAAPAAAAAARAVAAAPARrSPAPEALAAARQASARGPGGAPAPA 451

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  321 TSPTTQPAPATSPTTQPApatspttQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTtqPAPATSPTTQPAPA 400
Cdd:PRK12323   452 PAPAAAPAAAARPAAAGP-------RPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFAS--PAPAQPDAAPAGWV 522

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  401 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPT 454
Cdd:PRK12323   523 AESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDM 576
PHA03378 PHA03378
EBNA-3B; Provisional
 242-540 2.54e-20

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 97.83  E-value: 2.54e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  242 STSTQPAPASSPTTQPAPATSPTTQPAPAtSPTTQPAPatsptTQPAPATSPTTQPAPaTSPTTQPAPATSPTTQPAPAT 321
Cdd:PHA03378   591 SYAQTPWPVPHPSQTPEPPTTQSHIPETS-APRQWPMP-----LRPIPMRPLRMQPIT-FNVLVFPTPHQPPQVEITPYK 663

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  322 SPTTQPAPATSpttQPAPATSPTTQPtPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPAT 401
Cdd:PHA03378   664 PTWTQIGHIPY---QPSPTGANTMLP-IQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAA 739

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  402 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPttqpapaTSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSS 481
Cdd:PHA03378   740 APGRARPPAAAPGRARPPAAAPGRARPPAAAP-------GAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPR 812

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  482 SASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVPV 540
Cdd:PHA03378   813 AAPGQQGPTKQILRQLLTGGVKRGRPSLKKPAALERQAAAGPTPSPGSGTSDKIVQAPV 871
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
246-450 8.27e-20

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 95.71  E-value: 8.27e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  246 QPAPASSPTTQPAPATSPTTQPAPATSPTT--QPAPATSPTTQPAPATSPTTQPAPATSPTT-QPAPATSPTTQPAPATS 322
Cdd:PRK12323   364 RPGQSGGGAGPATAAAAPVAQPAPAAAAPAaaAPAPAAPPAAPAAAPAAAAAARAVAAAPARrSPAPEALAAARQASARG 443

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  323 PTTQPAPATSPTTQPAPATSPTTQPTpatspttQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAP--A 400
Cdd:PRK12323   444 PGGAPAPAPAPAAAPAAAARPAAAGP-------RPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQpdA 516

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 1831519558  401 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPG 450
Cdd:PRK12323   517 APAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPP 566
PHA03247 PHA03247
large tegument protein UL36; Provisional
 247-513 1.78e-19

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 95.78  E-value: 1.78e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  247 PAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS-----------PTTQPAPATSPTTQPAPATSPTT 315
Cdd:PHA03247  2804 PADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSlplggsvapggDVRRRPPSRSPAAKPAAPARPPV 2883

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  316 Q--PAPATSPTTQPAPatspttQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPAtsPTTQPAPATSP 393
Cdd:PHA03247  2884 RrlARPAVSRSTESFA------LPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA--PTTDPAGAGEP 2955

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  394 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP-TTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATN 472
Cdd:PHA03247  2956 SGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPlTGHSLSRVSSWASSLALHEETDPPPVSLKQTLWPPDDTE 3035

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|.
gi 1831519558  473 PTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSA 513
Cdd:PHA03247  3036 DSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATPE 3076
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 288-546 2.30e-19

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 94.67  E-value: 2.30e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  288 APATSPTTQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQP-TPATSPTTQPTPATSPTTQ 366
Cdd:PRK07764   389 GGAGAPAAAAPSAAAAAPAAAPAPAA---AAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAgNAPAGGAPSPPPAAAPSAQ 465

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  367 PTPATSPTTQPAPATSPTTQPAPAtsPTTQPAPATSPTTQPAP------------------------------------- 409
Cdd:PRK07764   466 PAPAPAAAPEPTAAPAPAPPAAPA--PAAAPAAPAAPAAPAGAddaatlrerwpeilaavpkrsrktwaillpeatvlgv 543

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  410 ------------------------------------------ATSPTTQPAPATSPTTQPAPATSPTTQPAPATS----- 442
Cdd:PRK07764   544 rgdtlvlgfstgglarrfaspgnaevlvtalaeelggdwqveAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPaapaa 623

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  443 PTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPA---PATSATTQPAPATSATTQPAP 519
Cdd:PRK07764   624 PAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAappPAPAPAAPAAPAGAAPAQPAP 703

                          330       340
                   ....*....|....*....|....*..
gi 1831519558  520 ATSPTTQPAPATSATTQSVPVVTTQTT 546
Cdd:PRK07764   704 APAATPPAGQADDPAAQPPQAAQGASA 730
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
240-444 1.38e-18

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 91.86  E-value: 1.38e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQ------PAPATSPTTQPAPATSPTTQPAPATSPTT-QPAPATSPTTQPAPATSPTTQPAPATS 312
Cdd:PRK12323   374 PATAAAAPVAQPAPAAAapaaaaPAPAAPPAAPAAAPAAAAAARAVAAAPARrSPAPEALAAARQASARGPGGAPAPAPA 453

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  313 PTTQPAPATSPTTQPApatspttQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTtqPAPATSPTTQPAPATS 392
Cdd:PRK12323   454 PAAAPAAAARPAAAGP-------RPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFAS--PAPAQPDAAPAGWVAE 524

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  393 PTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 444
Cdd:PRK12323   525 SIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDM 576
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
326-534 1.57e-18

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 91.48  E-value: 1.57e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  326 QPAPATSPTTQPAPATSPTTQPTPATSPTT--QPTPATSPTTQPTPATSPTTQPAPATSPTT-QPAPATSPTTQPAPATS 402
Cdd:PRK12323   364 RPGQSGGGAGPATAAAAPVAQPAPAAAAPAaaAPAPAAPPAAPAAAPAAAAAARAVAAAPARrSPAPEALAAARQASARG 443

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  403 PTTQPAPATSPTTQPAPATSPTTQ---PAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTtqPSPATNPTTQPSV 479
Cdd:PRK12323   444 PGGAPAPAPAPAAAPAAAARPAAAgprPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFAS--PAPAQPDAAPAGW 521

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  480 SSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSAT 534
Cdd:PRK12323   522 VAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDM 576
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
316-524 1.75e-18

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 91.48  E-value: 1.75e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  316 QPAPATSPTTQPAPATSPTTQPAPATSPTT--QPTPATSPTTQPTPATSPTTQPTPATSPTT-QPAPATSPTTQPAPATS 392
Cdd:PRK12323   364 RPGQSGGGAGPATAAAAPVAQPAPAAAAPAaaAPAPAAPPAAPAAAPAAAAAARAVAAAPARrSPAPEALAAARQASARG 443

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  393 PTTQPAPATSPTTQPAPATSP-TTQPAPATSPTTQPAPATSPTTQPAPA--TSPTTQPTPGTSPTtqPAPATSPTTQPSP 469
Cdd:PRK12323   444 PGGAPAPAPAPAAAPAAAARPaAAGPRPVAAAAAAAPARAAPAAAPAPAddDPPPWEELPPEFAS--PAPAQPDAAPAGW 521

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  470 ATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPT 524
Cdd:PRK12323   522 VAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDM 576
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
246-519 9.16e-18

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 89.52  E-value: 9.16e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  246 QPAP-ASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATsPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 324
Cdd:PRK07003   359 EPAVtGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGA-AGAALAPKAAAAAAATRAEAPPAAPAPPATAD 437

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  325 TQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 404
Cdd:PRK07003   438 RGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAAS 517

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  405 TQPAPAtsPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSAS 484
Cdd:PRK07003   518 REDAPA--AAAPPAPEARPPT-PAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAV 594

                          250       260       270
                   ....*....|....*....|....*....|....*
gi 1831519558  485 TQPAPATSGTTQPAPATSAttQPAPATSATTQPAP 519
Cdd:PRK07003   595 QVPTPRARAATGDAPPNGA--ARAEQAAESRGAPP 627
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
276-493 1.45e-17

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 88.39  E-value: 1.45e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  276 QPAPATSPTTQPAPATSPTTQPAPATSPTT--QPAPATSPTTQPAPATSPTTQPAPATSPTT-QPAPATSPTTQPTPATS 352
Cdd:PRK12323   364 RPGQSGGGAGPATAAAAPVAQPAPAAAAPAaaAPAPAAPPAAPAAAPAAAAAARAVAAAPARrSPAPEALAAARQASARG 443

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  353 PTTQPTPATSPTTQPTPATSPttqpaPATSPTTQPAPATSPTTQPAPATSPTtqPAPATSPTTQPAPATSPTTQPAP--A 430
Cdd:PRK12323   444 PGGAPAPAPAPAAAPAAAARP-----AAAGPRPVAAAAAAAPARAAPAAAPA--PADDDPPPWEELPPEFASPAPAQpdA 516

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831519558  431 TSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSG 493
Cdd:PRK12323   517 APAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDG 579
PHA03378 PHA03378
EBNA-3B; Provisional
 238-552 1.47e-17

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 88.97  E-value: 1.47e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  238 VVPASTSTQPAPASSPTTQPaPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP 317
Cdd:PHA03378   667 TQIGHIPYQPSPTGANTMLP-IQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRAR 745

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  318 APATSPTTQPAPATSPTTQPAPATSPttqptpatspttqptpaTSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQP 397
Cdd:PHA03378   746 PPAAAPGRARPPAAAPGRARPPAAAP-----------------GAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQ 808

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  398 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPttqpsPATNPTTQP 477
Cdd:PHA03378   809 LMPRAAPGQQGPTKQILRQLLTGGVKRGRPSLKKPAALERQAAAGPTPSPGSGTSDKIVQAPVFYP-----PVLQPIQVM 883

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  478 SVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVPVVTTQTTMGTSPT 552
Cdd:PHA03378   884 RQLGSVRAAAASTVTQAPTEYTGERRGVGPMHPTDIPPSKRAKTDAYVESQPPHGGQSHSFSVIWENVSQGQQQT 958
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 239-513 1.77e-17

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 88.50  E-value: 1.77e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  239 VPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAP------------------- 299
Cdd:PRK07764   450 AGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAtlrerwpeilaavpkrsrk 529

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  300 --------------------------------------------------------ATSPTTQPAPATSPTTQPAPATSP 323
Cdd:PRK07764   530 twaillpeatvlgvrgdtlvlgfstgglarrfaspgnaevlvtalaeelggdwqveAVVGPAPGAAGGEGPPAPASSGPP 609

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  324 TTQPAPATSP-TTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTT------QPAPATSPT-TQPAPATSPTT 395
Cdd:PRK07764   610 EEAARPAAPAaPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDAsdggdgWPAKAGGAApAAPPPAPAPAA 689

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  396 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTT 475
Cdd:PRK07764   690 PAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAA 769

                          330       340       350
                   ....*....|....*....|....*....|....*...
gi 1831519558  476 QPSVSSSASTQPAPATsgTTQPAPATSATTQPAPATSA 513
Cdd:PRK07764   770 PAAAPPPSPPSEEEEM--AEDDAPSMDDEDRRDAEEVA 805
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
238-434 1.94e-17

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 88.01  E-value: 1.94e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  238 VVPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTT-QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPttq 316
Cdd:PRK12323   388 AAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARrSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP--- 464

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  317 paPATSPTTQPAPATSPTTQPAPATSPTtqPTPATSPTTQPTPATSPTtqPTPATSPTTQPAPATSPTTQPAPATSPTTQ 396
Cdd:PRK12323   465 --AAAGPRPVAAAAAAAPARAAPAAAPA--PADDDPPPWEELPPEFAS--PAPAQPDAAPAGWVAESIPDPATADPDDAF 538

                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 1831519558  397 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 434
Cdd:PRK12323   539 ETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDM 576
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 238-443 3.89e-17

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 87.35  E-value: 3.89e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  238 VVPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPA-TSPTTQ 316
Cdd:PRK07764   586 AVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAvPDASDG 665

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  317 PAPATSPTTQPAPAtspttQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQ 396
Cdd:PRK07764   666 GDGWPAKAGGAAPA-----APPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVP 740

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 1831519558  397 PAPATSPTTQPAPAtSPTTQPAPATSPTTQPAPATSPTTQPAPATSP 443
Cdd:PRK07764   741 LPPEPDDPPDPAGA-PAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMA 786
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 242-555 7.21e-17

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 86.74  E-value: 7.21e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  242 STSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT--QPAP 319
Cdd:pfam03154  156 SDSDSSAQQQILQTQPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAPHTliQQTP 235

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  320 ATSPTTQPAP--ATSPTTQPAPATSPTTQPTPATSPTTQPTPATSP------------TTQPTPATSPTTQPAPATSPTT 385
Cdd:pfam03154  236 TLHPQRLPSPhpPLQPMTQPPPPSQVSPQPLPQPSLHGQMPPMPHSlqtgpshmqhpvPPQPFPLTPQSSQSQVPPGPSP 315

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  386 Q-PAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPA------ 458
Cdd:pfam03154  316 AaPGQSQQRIHTPPSQSQLQSQQPPREQPLP-PAPLSMPHIKPPPTTPIPQLPNPQSHKHPPHLSGPSPFQMNSnlpppp 394

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  459 ---PATSPTTQPSPATNPTTQPSVSSSASTQPAPAtsgttQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATT 535
Cdd:pfam03154  395 alkPLSSLSTHHPPSAHPPPLQLMPQSQQLPPPPA-----QPPVLTQSQSLPPPAASHPPTSGLHQVPSQSPFPQHPFVP 469

                          330       340
                   ....*....|....*....|
gi 1831519558  536 QSVPVVTTQTTMGTSPTTAG 555
Cdd:pfam03154  470 GGPPPITPPSGPPTSTSSAM 489
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 240-556 9.74e-17

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 86.38  E-value: 9.74e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAP 319
Cdd:PHA03307    73 PGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASP 152

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  320 ATSPTTQPAPATSPTTQP--------APATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPA--- 388
Cdd:PHA03307   153 PAAGASPAAVASDAASSRqaalplssPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAAdda 232

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  389 ---PATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTT 465
Cdd:PHA03307   233 gasSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSP 312

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  466 QPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVPVVTTQT 545
Cdd:PHA03307   313 RASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARA 392

                          330
                   ....*....|....*....
gi 1831519558  546 TM--------GTSPTTAGI 556
Cdd:PHA03307   393 AVagrarrrdATGRFPAGR 411
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
266-539 1.02e-16

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 86.06  E-value: 1.02e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  266 QPAP-ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAtspttqpAPATSPTTQPAPATSPTTQPAPATSPT 344
Cdd:PRK07003   359 EPAVtGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTG-------AAGAALAPKAAAAAAATRAEAPPAAPA 431

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  345 TQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPtTQPAPATSPTTQPAPATSPTTQPAPATSPT 424
Cdd:PRK07003   432 PPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAP-ASDAPPDAAFEPAPRAAAPSAATPAAVPDA 510

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  425 TQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSV--SSSASTQPAPATSGTTQPAPATS 502
Cdd:PRK07003   511 RAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSdrGARAAAAAKPAAAPAAAPKPAAP 590

                          250       260       270
                   ....*....|....*....|....*....|....*..
gi 1831519558  503 ATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVP 539
Cdd:PRK07003   591 RVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPP 627
rne PRK10811
ribonuclease E; Reviewed
 239-448 4.09e-16

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 84.32  E-value: 4.09e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  239 VPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTTQPAPATSPTTQP 317
Cdd:PRK10811   858 QREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVvETTHPEVIAAPVTEQPQVITESDVA 937

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  318 APATSpttqpAPATSPTTQPAPATSPTTQPTPATS-PTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQ 396
Cdd:PRK10811   938 VAQEV-----AEHAEPVVEPQDETADIEEAAETAEvVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVE 1012

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  397 PAPATSP-TTQPAPATSPttqPAPATSPTTQP---------APATSPTTQpapATSPTTQPT 448
Cdd:PRK10811  1013 HNHATAPmTRAPAPEYVP---EAPRHSDWQRPtfafegkgaAGGHSATHH---ASAPATRPQ 1068
rne PRK10811
ribonuclease E; Reviewed
 251-468 5.11e-16

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 83.94  E-value: 5.11e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  251 SSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAtspTTQPAPATSPTTQPAPATSPTTQPAPA 330
Cdd:PRK10811   844 RYPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAE---VVEEPVVVAEPQPEEVVVVETTHPEVI 920

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  331 TSPTTQPAPATSPTTQP-----TPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT- 404
Cdd:PRK10811   921 AAPVTEQPQVITESDVAvaqevAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPe 1000

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  405 TQPAPATSPTTQPAPATSP-TTQPAPATSPttqPAPATSPTTQPT---------PGTSPTTQpapATSPTTQPS 468
Cdd:PRK10811  1001 VAPAQVPEATVEHNHATAPmTRAPAPEYVP---EAPRHSDWQRPTfafegkgaaGGHSATHH---ASAPATRPQ 1068
rne PRK10811
ribonuclease E; Reviewed
 273-527 8.00e-16

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 83.17  E-value: 8.00e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  273 PTTQPAPATSPTTQPAPATS------PTTQPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPttQPAPATSPTTQ 346
Cdd:PRK10811   820 PTQSPMPLTVACASPEMASGkvwiryPVVRPQDVQVEEQREAEEVQV--QPVVAEVPVAAAVEPVVS--APVVEAVAEVV 895

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  347 PTPATSPTTQPTPATS-PTTQPTPATSPTTQPAPATSPTTQPAPATSpttqpAPATSPTTQPAPATSPTTQPAPATSPTT 425
Cdd:PRK10811   896 EEPVVVAEPQPEEVVVvETTHPEVIAAPVTEQPQVITESDVAVAQEV-----AEHAEPVVEPQDETADIEEAAETAEVVV 970

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  426 QPAPATSPTTQPAPATSPTTQPTPGTSPT-TQPAPATSPTTQPSPATNPTTqpsvsssasTQPAPAtsgtTQPAPATSAT 504
Cdd:PRK10811   971 AEPEVVAQPAAPVVAEVAAEVETVTAVEPeVAPAQVPEATVEHNHATAPMT---------RAPAPE----YVPEAPRHSD 1037

                          250       260       270
                   ....*....|....*....|....*....|...
gi 1831519558  505 TQ-P---------APATSATTQpapATSPTTQP 527
Cdd:PRK10811  1038 WQrPtfafegkgaAGGHSATHH---ASAPATRP 1067
rne PRK10811
ribonuclease E; Reviewed
 271-530 2.27e-15

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 81.62  E-value: 2.27e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  271 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATsptTQPAPATSPTTQPAPATS------------------ 332
Cdd:PRK10811   732 EQSVAEEAVAPVVEETVAAEPVVQEVPAPRTELVKVPLPVV---AQTAPEQDEENNAENRDNngmprrsrrsprhlrvsg 808

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  333 -----------PTTQPAPATSPTTQPTPATS------PTTQPTPATS------PTTQPTPATSPTTQPAPATSPTTQPAP 389
Cdd:PRK10811   809 qrrrryrderyPTQSPMPLTVACASPEMASGkvwiryPVVRPQDVQVeeqreaEEVQVQPVVAEVPVAAAVEPVVSAPVV 888

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  390 ATSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTTQPAPATSPTTQP-----APATSPTTQPTPGTSPTTQPAPATS- 462
Cdd:PRK10811   889 EAVAEVVEEPVVVAEPQPEEVVVvETTHPEVIAAPVTEQPQVITESDVAvaqevAEHAEPVVEPQDETADIEEAAETAEv 968

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  463 PTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQpAPAtsPTTQPAPA 530
Cdd:PRK10811   969 VVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATAPMTR-APA--PEYVPEAP 1033
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 298-555 5.47e-15

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 80.42  E-value: 5.47e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  298 APATSPTTQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPttqptPATSPTTQP 377
Cdd:PRK07764   385 LGVAGGAGAPAAAAPSAAAAAPAAAP---APAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGN-----APAGGAPSP 456

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  378 APATSPTTQPAPATSPTTQPAPATSPTTQPAPAtsPTTQPAPATSPTTQPAP---------------------------- 429
Cdd:PRK07764   457 PPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPA--PAAAPAAPAAPAAPAGAddaatlrerwpeilaavpkrsrktwail 534

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  430 -----------------------------------------------------------ATSPTTQPAPATS-------- 442
Cdd:PRK07764   535 lpeatvlgvrgdtlvlgfstgglarrfaspgnaevlvtalaeelggdwqveavvgpapgAAGGEGPPAPASSgppeeaar 614

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  443 PTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSS-SASTQPAPATSGTTQPAPATS-ATTQPAPATSATTQPAPA 520
Cdd:PRK07764   615 PAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHpKHVAVPDASDGGDGWPAKAGGaAPAAPPPAPAPAAPAAPA 694

                          330       340       350
                   ....*....|....*....|....*....|....*
gi 1831519558  521 TSPTTQPAPATSATTQSVPVVTTQTTMGTSPTTAG 555
Cdd:PRK07764   695 GAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGAS 729
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
356-552 7.31e-15

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 79.92  E-value: 7.31e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  356 QPTPATSPTTQPTPATSPTTQPAPATSPttqPAPATspttqPAPATSPTTQPAPATSPTTQPAPATSPTT-QPAPATSPT 434
Cdd:PRK12323   364 RPGQSGGGAGPATAAAAPVAQPAPAAAA---PAAAA-----PAPAAPPAAPAAAPAAAAAARAVAAAPARrSPAPEALAA 435

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  435 TQPAPATSPTTQPTPGTSPTTQPAPATSP-TTQPSPATNPTTQPSVSSSASTQPAPATSGT----------TQPAPATSA 503
Cdd:PRK12323   436 ARQASARGPGGAPAPAPAPAAAPAAAARPaAAGPRPVAAAAAAAPARAAPAAAPAPADDDPppweelppefASPAPAQPD 515

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*....
gi 1831519558  504 TTQPAPATSATTQPAPATSPTTQPAPATSATTQSVPVVTTQTTMGTSPT 552
Cdd:PRK12323   516 AAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPR 564
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 241-535 9.69e-15

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 79.81  E-value: 9.69e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  241 ASTSTQPAPASSPTTQPAPATS-PTTQPAPATSPTT--QPAPATSPTTQPAP--ATSPTTQPAPATSPTTQPAPATSPTT 315
Cdd:pfam03154  194 AATAGPTPSAPSVPPQGSPATSqPPNQTQSTAAPHTliQQTPTLHPQRLPSPhpPLQPMTQPPPPSQVSPQPLPQPSLHG 273

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  316 QPAPATSP------------TTQPAPATSPTTQPAPATSPTTQ-PTPATSPTTQPTPATSPTTQPTPATSPTTqPAPATS 382
Cdd:pfam03154  274 QMPPMPHSlqtgpshmqhpvPPQPFPLTPQSSQSQVPPGPSPAaPGQSQQRIHTPPSQSQLQSQQPPREQPLP-PAPLSM 352

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  383 PTTQPAPATSPTTQPAPAT----SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPA 458
Cdd:pfam03154  353 PHIKPPPTTPIPQLPNPQShkhpPHLSGPSPFQMNSNLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQQLPPPPAQPP 432

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  459 PATSPTTQPSPATNPTTQPSVSSSASTQPAP----ATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSAT 534
Cdd:pfam03154  433 VLTQSQSLPPPAASHPPTSGLHQVPSQSPFPqhpfVPGGPPPITPPSGPPTSTSSAMPGIQPPSSASVSSSGPVPAAVSC 512


                   .
gi 1831519558  535 T 535
Cdd:pfam03154  513 P 513
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 247-527 1.09e-13

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 76.34  E-value: 1.09e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  247 PAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTtQPAPATSP---TTQPAPATSPTTQPAPATSPTTQ-PAPATS 322
Cdd:pfam03154  245 PHPPLQPMTQPPPPSQVSPQPLPQPSLHGQMPPMPHSL-QTGPSHMQhpvPPQPFPLTPQSSQSQVPPGPSPAaPGQSQQ 323

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  323 PTTQPAPATSPTTQ---------PAPATSPTTQPTPATSPTTQPTPAT----SPTTQPTPATSPTTQPAP------ATSP 383
Cdd:pfam03154  324 RIHTPPSQSQLQSQqppreqplpPAPLSMPHIKPPPTTPIPQLPNPQShkhpPHLSGPSPFQMNSNLPPPpalkplSSLS 403

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  384 TTQPAPATSPTTQPAPATSPtTQPAPATSPTTQPAPATSPTTQPAPATSpTTQPAPATSPTTQPTPGTSPTTQPAPATSP 463
Cdd:pfam03154  404 THHPPSAHPPPLQLMPQSQQ-LPPPPAQPPVLTQSQSLPPPAASHPPTS-GLHQVPSQSPFPQHPFVPGGPPPITPPSGP 481

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  464 TTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPaPATSATTQPAPATSATTQPAPATSPTTQP 527
Cdd:pfam03154  482 PTSTSSAMPGIQPPSSASVSSSGPVPAAVSCPLP-PVQIKEEALDEAEEPESPPPPPRSPSPEP 544
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 247-400 1.42e-13

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 75.29  E-value: 1.42e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  247 PAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ 326
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  327 PAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPA 400
Cdd:PRK07994   441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAA 514
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 257-410 1.97e-13

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 74.90  E-value: 1.97e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  257 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ 336
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  337 PAPATSPTTQPTPATSPttqPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPA 410
Cdd:PRK07994   441 SEPAAASRARPVNSALE---RLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPE 511
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
298-510 2.37e-13

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 74.40  E-value: 2.37e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  298 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQP 377
Cdd:COG3469      5 STAASPTAGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATA 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  378 APATSPTTqpaPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQP 457
Cdd:COG3469     85 AAAAATST---SATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATG 161

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1831519558  458 APATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPA 510
Cdd:COG3469    162 GTTTTSTTTTTTSASTTPSATTTATATTASGATTPSATTTATTTGPPTPGLPK 214
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 267-420 2.68e-13

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 74.52  E-value: 2.68e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  267 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ 346
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  347 PTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPA 420
Cdd:PRK07994   441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAA 514
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 297-449 2.87e-13

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 74.52  E-value: 2.87e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  297 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQ 376
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831519558  377 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTtqpAPATSPTTQPTP 449
Cdd:PRK07994   441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPK---ALKKALEHEKTP 510
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
316-554 2.90e-13

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 74.89  E-value: 2.90e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  316 QPAP-ATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATsPTTQPTPATSPTTQPAPATSPTTQPAPATSPT 394
Cdd:PRK07003   359 EPAVtGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGA-AGAALAPKAAAAAAATRAEAPPAAPAPPATAD 437

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  395 TqpapATSPTTQPAPAtsPTTQPAPATSPTTQPAPATSPTTQPAPATSPtTQPTPGTSPTTQPAPATSPTTQPSPATNPT 474
Cdd:PRK07003   438 R----GDDAADGDAPV--PAKANARASADSRCDERDAQPPADSGSASAP-ASDAPPDAAFEPAPRAAAPSAATPAAVPDA 510

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  475 TQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSAT-------------------TQPAPATSPTTQPAPATSATT 535
Cdd:PRK07003   511 RAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAaaldvlrnagmrvssdrgaRAAAAAKPAAAPAAAPKPAAP 590

                          250       260
                   ....*....|....*....|
gi 1831519558  536 Q-SVPVVTTQTTMGTSPTTA 554
Cdd:PRK07003   591 RvAVQVPTPRARAATGDAPP 610
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 317-470 3.02e-13

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 74.52  E-value: 3.02e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  317 PAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQ 396
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  397 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPA 470
Cdd:PRK07994   441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAA 514
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
248-459 3.08e-13

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 74.02  E-value: 3.08e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  248 APASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP 327
Cdd:COG3469      5 STAASPTAGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATA 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  328 APATSPTTQpapATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP 407
Cdd:COG3469     85 AAAAATSTS---ATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATG 161

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  408 APATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPTPGTSPTTQPAP 459
Cdd:COG3469    162 GTTTTSTTTTTTSASTTPSATTTATATT-ASGATTPSATTTATTTGPPTPGL 212
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 377-533 3.12e-13

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 74.52  E-value: 3.12e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  377 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQ 456
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  457 PAPATSPTTQPSPATnPTTQPSVSSSASTQPAPATSGTTQPAPATSAttQPAPATSATTQPAPATSPTTQPAPATSA 533
Cdd:PRK07994   441 SEPAAASRARPVNSA-LERLASVRPAPSALEKAPAKKEAYRWKATNP--VEVKKEPVATPKALKKALEHEKTPELAA 514
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
239-449 3.50e-13

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 74.50  E-value: 3.50e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  239 VPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA 318
Cdd:PRK07003   402 VTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPA 481

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  319 PATSPTT--QPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATsPTTQPAPATSPTTQPA-------- 388
Cdd:PRK07003   482 SDAPPDAafEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPT-PAAAAPAARAGGAAAAldvlrnag 560

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  389 ------PATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTP 449
Cdd:PRK07003   561 mrvssdRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPP 627
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 241-529 3.83e-13

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 74.74  E-value: 3.83e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  241 ASTSTQPAPASSPTTQPAPATsPTTQPAPAtSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPA-PATSPTTQPAP 319
Cdd:PRK10263   326 ATTATQSWAAPVEPVTQTPPV-ASVDVPPA-QPTVAWQPVPGPQT-GEPVIAPAPEGYPQQSQYAQPAvQYNEPLQQPVQ 402

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  320 ATSPTTQPAPATSPTTQPAPATSPTT----QPTPATSPTTQPTPATSPTTQPTPATSPTTQPapaTSPTTQPAPATSPTT 395
Cdd:PRK10263   403 PQQPYYAPAAEQPAQQPYYAPAPEQPaqqpYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQT---EQTYQQPAAQEPLYQ 479

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  396 QPAPATSP-TTQPAPATSPTTqpaPATSPTTQPAPATSPTTQPAPATSPTTQPTPgtspttQPAPATSPTTQPSPATNPT 474
Cdd:PRK10263   480 QPQPVEQQpVVEPEPVVEETK---PARPPLYYFEEVEEKRAREREQLAAWYQPIP------EPVKEPEPIKSSLKAPSVA 550

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  475 TQPSVSSSASTqpAPATSGTTQPAPATSAttqpapatsATTQPAPATSPTTQPAP 529
Cdd:PRK10263   551 AVPPVEAAAAV--SPLASGVKKATLATGA---------AATVAAPVFSLANSGGP 594
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 277-430 3.87e-13

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 74.13  E-value: 3.87e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  277 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQ 356
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  357 PTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPA 430
Cdd:PRK07994   441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAA 514
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
268-483 4.35e-13

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 73.63  E-value: 4.35e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  268 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP 347
Cdd:COG3469      5 STAASPTAGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATA 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  348 TPATSPTTQptpATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP 427
Cdd:COG3469     85 AAAAATSTS---ATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATG 161

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  428 APATSPTTQPAPATSPTTQPTPGTSPTTqPAPATSPTTQPSPATNPTTQPSVSSSA 483
Cdd:COG3469    162 GTTTTSTTTTTTSASTTPSATTTATATT-ASGATTPSATTTATTTGPPTPGLPKHV 216
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
258-469 5.79e-13

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 73.25  E-value: 5.79e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  258 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP 337
Cdd:COG3469      5 STAASPTAGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATA 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  338 APATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTqpaPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP 417
Cdd:COG3469     85 AAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSV---TSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATG 161

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  418 APATSPTTQPAPATSPTTQPAPATSPTTqPTPGTSPTTQPAPATSPTTQPSP 469
Cdd:COG3469    162 GTTTTSTTTTTTSASTTPSATTTATATT-ASGATTPSATTTATTTGPPTPGL 212
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 263-551 7.11e-13

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 73.97  E-value: 7.11e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  263 PTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPApatSPTTQPAPATSPTTqPAPATSPTTQPAPATS 342
Cdd:PRK10263   309 PLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPA---QPTVAWQPVPGPQT-GEPVIAPAPEGYPQQS 384

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  343 PTTQP-TPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPatSPTTQPAPAT 421
Cdd:PRK10263   385 QYAQPaVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQ--QSTFAPQSTY 462

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  422 SP-TTQPAPATSPTTQPAPAT---SPTTQPTPGTSPTTqpaPATSPTTQPSPATNPTTQPSVSSSASTQPAPATsgTTQP 497
Cdd:PRK10263   463 QTeQTYQQPAAQEPLYQQPQPveqQPVVEPEPVVEETK---PARPPLYYFEEVEEKRAREREQLAAWYQPIPEP--VKEP 537

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  498 APATSATTQPAPATSATTQPAPATSPTTQ-----PAPATSATTQSVPVVTTQTTMGTSP 551
Cdd:PRK10263   538 EPIKSSLKAPSVAAVPPVEAAAAVSPLASgvkkaTLATGAAATVAAPVFSLANSGGPRP 596
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 327-479 7.24e-13

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 73.36  E-value: 7.24e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  327 PAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ 406
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831519558  407 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSV 479
Cdd:PRK07994   441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELA 513
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 240-554 7.38e-13

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 73.67  E-value: 7.38e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAtSPTTQPAPATSPTTQPAPATSPTTQPAP 319
Cdd:PHA03307    24 PPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPG-PGTEAPANESRSTPTWSLSTLAPASPAR 102

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  320 ATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTT--QPAPATSPTTQP 397
Cdd:PHA03307   103 EGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASsrQAALPLSSPEET 182

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  398 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQP 477
Cdd:PHA03307   183 ARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAP 262

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  478 SVSSSASTQPAPATSGTTQPAPATSATTQPAPAtsattqpaPATSPTTQPAPATSATTQSVPVVTTQTTMGTSPTTA 554
Cdd:PHA03307   263 ITLPTRIWEASGWNGPSSRPGPASSSSSPRERS--------PSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSS 331
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 287-440 7.43e-13

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 72.98  E-value: 7.43e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  287 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQ 366
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  367 PTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPA 440
Cdd:PRK07994   441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAA 514
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 240-390 1.10e-12

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 72.59  E-value: 1.10e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPA--PASSPTTQPAPATSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ 316
Cdd:PRK07994   361 PAAPLPEPEvpPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASaPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  317 PAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPA 390
Cdd:PRK07994   441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAA 514
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 249-396 1.24e-12

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 72.44  E-value: 1.24e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  249 PASSPTTQPAPATSPTTQPAPAtspttqpAPATSPTTQPAPATSPTTQPAPATSPTTQP-APATSPTTQPAPATSPTTQP 327
Cdd:PRK14951   366 PAAAAEAAAPAEKKTPARPEAA-------APAAAPVAQAAAAPAPAAAPAAAASAPAAPpAAAPPAPVAAPAAAAPAAAP 438

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  328 APATSPTTQPAPATSPTTQPTPATSPTTQPTPAtspttQPTPATSPTTQPAPATSPTTQPAPATSPTTQ 396
Cdd:PRK14951   439 AAAPAAVALAPAPPAQAAPETVAIPVRVAPEPA-----VASAAPAPAAAPAAARLTPTEEGDVWHATVQ 502
rne PRK10811
ribonuclease E; Reviewed
 238-427 1.34e-12

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 72.76  E-value: 1.34e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  238 VVPASTSTQPAPASSPT-TQPAPATSPTTQPAPATSPTTQPAPATS-PTTQPAPATSP-TTQPAPATSPTTQPAPATSPT 314
Cdd:PRK10811   866 VQPVVAEVPVAAAVEPVvSAPVVEAVAEVVEEPVVVAEPQPEEVVVvETTHPEVIAAPvTEQPQVITESDVAVAQEVAEH 945

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  315 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAP-----ATSP-TTQPA 388
Cdd:PRK10811   946 AEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATvehnhATAPmTRAPA 1025

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*...
gi 1831519558  389 PATSPttqPAPATSPTTQP---------APATSPTTQpapATSPTTQP 427
Cdd:PRK10811  1026 PEYVP---EAPRHSDWQRPtfafegkgaAGGHSATHH---ASAPATRP 1067
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
318-538 3.66e-12

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 70.55  E-value: 3.66e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  318 APATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQP 397
Cdd:COG3469      5 STAASPTAGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATA 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  398 APATSPTTQpapATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTqp 477
Cdd:COG3469     85 AAAAATSTS---ATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETA-- 159

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1831519558  478 svssSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSV 538
Cdd:COG3469    160 ----TGGTTTTSTTTTTTSASTTPSATTTATATTASGATTPSATTTATTTGPPTPGLPKHV 216
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 238-517 5.71e-12

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 70.97  E-value: 5.71e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  238 VVPASTSTQPAPASSPTTQPAPATSPT--TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT 315
Cdd:PHA03307   121 PPPASPPPSPAPDLSEMLRPVGSPGPPpaASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPA 200

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  316 QPAPATSPTTQPAPATSPTTQPAPATSP------------------------TTQPTPATSPTTQPTP--------ATSP 363
Cdd:PHA03307   201 AASPRPPRRSSPISASASSPAPAPGRSAaddagasssdssssessgcgwgpeNECPLPRPAPITLPTRiweasgwnGPSS 280

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  364 TTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP-----TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA 438
Cdd:PHA03307   281 RPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSsressSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPA 360

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  439 PATSPTTQPTPGTSPTTQPAPATSPTTqpspatnPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQP 517
Cdd:PHA03307   361 DPSSPRKRPRPSRAPSSPAASAGRPTR-------RRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPL 432
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 240-386 7.47e-12

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 69.74  E-value: 7.47e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPAtspttQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAP 319
Cdd:PRK14951   366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA-----PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAA 440

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  320 ATSPTTQPAPATSPTTQPAPATSPTTQPTPAtspttQPTPATSPTTQPTPATSPTTQPAPATSPTTQ 386
Cdd:PRK14951   441 APAAVALAPAPPAQAAPETVAIPVRVAPEPA-----VASAAPAPAAAPAAARLTPTEEGDVWHATVQ 502
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 368-520 7.51e-12

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 69.89  E-value: 7.51e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  368 TPATSPTTQPAPATSPTTQPAPATsPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP 447
Cdd:PRK07994   363 APLPEPEVPPQSAAPAASAQATAA-PTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKS 441

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831519558  448 TPGTSPTTQPAPATSPttqPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPA 520
Cdd:PRK07994   442 EPAAASRARPVNSALE---RLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPE 511
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 277-416 8.28e-12

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 69.74  E-value: 8.28e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  277 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPTPATSPTTQ 356
Cdd:PRK14951   371 EAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAP---PAAAPPAPVAAPAAAAPAAAPAAAPAAVAL 447

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  357 PTPATSPTTQPTPATSPTTQPAPAtspttQPAPATSPTTQPAPATSPTTQPAPATSPTTQ 416
Cdd:PRK14951   448 APAPPAQAAPETVAIPVRVAPEPA-----VASAAPAPAAAPAAARLTPTEEGDVWHATVQ 502
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 238-380 8.53e-12

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 69.89  E-value: 8.53e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  238 VVPASTSTQPAPASS--PTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT 315
Cdd:PRK07994   370 VPPQSAAPAASAQATaaPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRA 449

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  316 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPA 380
Cdd:PRK07994   450 RPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAA 514
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 307-446 1.34e-11

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 68.97  E-value: 1.34e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  307 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPttqPTPATSPTTQPTPATSPTTQPAPATSPTTQ 386
Cdd:PRK14951   371 EAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAP---PAAAPPAPVAAPAAAAPAAAPAAAPAAVAL 447

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  387 PAPATSPTTQPAPATSPTTQPAPAtspttQPAPATSPTTQPAPATSPTTQPAPATSPTTQ 446
Cdd:PRK14951   448 APAPPAQAAPETVAIPVRVAPEPA-----VASAAPAPAAAPAAARLTPTEEGDVWHATVQ 502
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 329-483 1.75e-11

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 68.59  E-value: 1.75e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  329 PATSPTTQPAPATSPTTQPTPATspttqptPATSPTTQPTPATSPTTQPAPATSPTTQP-APATSPTTQPAPATSPTTQP 407
Cdd:PRK14951   366 PAAAAEAAAPAEKKTPARPEAAA-------PAAAPVAQAAAAPAPAAAPAAAASAPAAPpAAAPPAPVAAPAAAAPAAAP 438

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  408 APATSPTTQPAPATSPTTQPAPATSPTTQPAPAtspttQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSA 483
Cdd:PRK14951   439 AAAPAAVALAPAPPAQAAPETVAIPVRVAPEPA-----VASAAPAPAAAPAAARLTPTEEGDVWHATVQQLAAAEA 509
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
375-507 1.93e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 68.65  E-value: 1.93e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  375 TQPAPATSPTTQPAPATSP-TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPgtsP 453
Cdd:PRK14971   363 TQKGDDASGGRGPKQHIKPvFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN---P 439

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  454 TTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPA-PATSGTTQPAPATSATTQP 507
Cdd:PRK14971   440 PSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIqEKAEQATGNIKEAPTGTQK 494
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 239-509 2.37e-11

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 68.96  E-value: 2.37e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  239 VPASTSTQPAPASSPTTQPAPAT-SPTTQPAPATSPttqpaPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP 317
Cdd:PRK10263   346 VASVDVPPAQPTVAWQPVPGPQTgEPVIAPAPEGYP-----QQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPY 420

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  318 APATSPTTQPAPatspttQPAPATSPTTQPTPATSPTTQPTPATSPTTQPtpaTSPTTQPAPATSPTTQPAPATSP-TTQ 396
Cdd:PRK10263   421 YAPAPEQPAQQP------YYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQT---EQTYQQPAAQEPLYQQPQPVEQQpVVE 491

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  397 PAPATSPTTqpaPATSPTTQPAPATSPTTQPAPATSPTTQPAPatSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPttq 476
Cdd:PRK10263   492 PEPVVEETK---PARPPLYYFEEVEEKRAREREQLAAWYQPIP--EPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSP--- 563

                          250       260       270
                   ....*....|....*....|....*....|...
gi 1831519558  477 psVSSSASTQPAPATSGTTQPAPATSATTQPAP 509
Cdd:PRK10263   564 --LASGVKKATLATGAAATVAAPVFSLANSGGP 594
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
275-406 2.43e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 68.26  E-value: 2.43e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  275 TQPAPATSPTTQPAPATSP-TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPatsP 353
Cdd:PRK14971   363 TQKGDDASGGRGPKQHIKPvFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN---P 439

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  354 TTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPA--PATSPTTQPAPATSPTTQ 406
Cdd:PRK14971   440 PSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIqeKAEQATGNIKEAPTGTQK 494
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
285-416 2.71e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 67.88  E-value: 2.71e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  285 TQPAPATSPTTQPAPATSP-TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPatsP 363
Cdd:PRK14971   363 TQKGDDASGGRGPKQHIKPvFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN---P 439

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  364 TTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPA--PATSPTTQPAPATSPTTQ 416
Cdd:PRK14971   440 PSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIqeKAEQATGNIKEAPTGTQK 494
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
265-396 2.98e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 67.88  E-value: 2.98e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  265 TQPAPATSPTTQPAPATSP-TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPatsP 343
Cdd:PRK14971   363 TQKGDDASGGRGPKQHIKPvFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN---P 439

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  344 TTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPA--PATSPTTQPAPATSPTTQ 396
Cdd:PRK14971   440 PSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIqeKAEQATGNIKEAPTGTQK 494
rne PRK10811
ribonuclease E; Reviewed
 291-549 3.37e-11

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 68.14  E-value: 3.37e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  291 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATsptTQPAPATSPTTQPTPATSpttQPTPATS-------- 362
Cdd:PRK10811   732 EQSVAEEAVAPVVEETVAAEPVVQEVPAPRTELVKVPLPVV---AQTAPEQDEENNAENRDN---NGMPRRSrrsprhlr 805

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  363 --------------PTTQPTPATSPTTQPAPATS------PTTQPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATS 422
Cdd:PRK10811   806 vsgqrrrryrderyPTQSPMPLTVACASPEMASGkvwiryPVVRPQDVQVEEQREAEEVQV--QPVVAEVPVAAAVEPVV 883

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  423 PttQPAPATSPTTQPAPATSPTTQPTPGTS-PTTQPAPATSPTTQPSPATNPTTQPSVSSSA-STQPAPATSGTTQPAPA 500
Cdd:PRK10811   884 S--APVVEAVAEVVEEPVVVAEPQPEEVVVvETTHPEVIAAPVTEQPQVITESDVAVAQEVAeHAEPVVEPQDETADIEE 961

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*....
gi 1831519558  501 TSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVPVVTTQTTMGT 549
Cdd:PRK10811   962 AAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEAT 1010
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
245-357 3.76e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 67.49  E-value: 3.76e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  245 TQPAPASSPTTQPAPATSP-TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPatsP 323
Cdd:PRK14971   363 TQKGDDASGGRGPKQHIKPvFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN---P 439

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1831519558  324 TTQPAPATSPTTQPAPATSPTTQPTPATSPTTQP 357
Cdd:PRK14971   440 PSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRP 473
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
241-429 3.79e-11

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 67.47  E-value: 3.79e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  241 ASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPA 320
Cdd:COG3469     25 AAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATAAAAAATSTSATLVATSTASG 104

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  321 TSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPA 400
Cdd:COG3469    105 ANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGGTTTTSTTTTTTSASTTPSATTT 184

                          170       180
                   ....*....|....*....|....*....
gi 1831519558  401 TSPTTqPAPATSPTTQPAPATSPTTQPAP 429
Cdd:COG3469    185 ATATT-ASGATTPSATTTATTTGPPTPGL 212
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 344-490 3.98e-11

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 67.58  E-value: 3.98e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  344 TTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTtQPAPATSPTTQPAPATSPTTQPAPAtsptTQPAPATSP 423
Cdd:PRK07994   363 APLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPP-ASAPQQAPAVPLPETTSQLLAARQQ----LQRAQGATK 437

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  424 TTQPAPATSPTTQPAPAtSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPA 490
Cdd:PRK07994   438 AKKSEPAAASRARPVNS-ALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKA 503
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
372-477 4.74e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 67.11  E-value: 4.74e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  372 SPTTQPAPATSP-TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPatsPTTQPTPG 450
Cdd:PRK14971   370 SGGRGPKQHIKPvFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN---PPSTAPQA 446

                           90       100
                   ....*....|....*....|....*..
gi 1831519558  451 TSPTTQPAPATSPTTQPSPATNPTTQP 477
Cdd:PRK14971   447 VRPAQFKEEKKIPVSKVSSLGPSTLRP 473
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
239-439 4.96e-11

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 67.09  E-value: 4.96e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  239 VPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQpa 318
Cdd:COG3469     16 SATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATAAAAAATSTS-- 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  319 pATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPA 398
Cdd:COG3469     94 -ATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGGTTTTSTTTTT 172

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|.
gi 1831519558  399 PATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAP 439
Cdd:COG3469    173 TSASTTPSATTTATATT-ASGATTPSATTTATTTGPPTPGL 212
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 317-447 5.14e-11

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 67.05  E-value: 5.14e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  317 PAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPttqPTPATSPTTQPAPATSPTTQPAPATSPTTQ 396
Cdd:PRK14951   371 EAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAP---PAAAPPAPVAAPAAAAPAAAPAAAPAAVAL 447

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1831519558  397 PAPATSPTTQPAPATSPTTQPAPAtspttQPAPATSPTTQPAPATSPTTQP 447
Cdd:PRK14951   448 APAPPAQAAPETVAIPVRVAPEPA-----VASAAPAPAAAPAAARLTPTEE 493
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 387-539 5.15e-11

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 67.20  E-value: 5.15e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  387 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQ 466
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831519558  467 PSPATNPTTQPsvsSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVP 539
Cdd:PRK07994   441 SEPAAASRARP---VNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTP 510
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
305-436 5.53e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 67.11  E-value: 5.53e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  305 TQPAPATSPTTQPAPATSP-TTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPatsP 383
Cdd:PRK14971   363 TQKGDDASGGRGPKQHIKPvFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN---P 439

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  384 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA--PATSPTTQPAPATSPTTQ 436
Cdd:PRK14971   440 PSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIqeKAEQATGNIKEAPTGTQK 494
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
255-386 5.82e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 67.11  E-value: 5.82e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  255 TQPAPATSPTTQPAPATSP-TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPatsP 333
Cdd:PRK14971   363 TQKGDDASGGRGPKQHIKPvFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN---P 439

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  334 TTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPT--PATSPTTQPAPATSPTTQ 386
Cdd:PRK14971   440 PSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIqeKAEQATGNIKEAPTGTQK 494
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 240-531 6.26e-11

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 67.10  E-value: 6.26e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT------QPAPATSP 313
Cdd:pfam03154   47 PSAASTSSNDSKAESMKKSSKKIKEEAPSPLKSAKRQREKGASDTEEPERATAKKSKTQEISRPNSpsegegESSDGRSV 126

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  314 TTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAP-ATS 392
Cdd:pfam03154  127 NDEGSSDPKDIDQDNRSTSPSI-PSPQDNESDSDSSAQQQILQTQPPVLQAQSGAASPPSPPPPGTTQAATAGPTPsAPS 205

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  393 PTTQPAPATS-PTTQPAPATSPTT--QPAPATSPTTQPAP--ATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSP---- 463
Cdd:pfam03154  206 VPPQGSPATSqPPNQTQSTAAPHTliQQTPTLHPQRLPSPhpPLQPMTQPPPPSQVSPQPLPQPSLHGQMPPMPHSlqtg 285

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  464 --------TTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPAT 531
Cdd:pfam03154  286 pshmqhpvPPQPFPLTPQSSQSQVPPGPSPAAPGQSQQRIHTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTT 361
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
349-555 7.83e-11

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 66.31  E-value: 7.83e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  349 PATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA 428
Cdd:COG3469      6 TAASPTAGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATAA 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  429 PATSPTTQpapATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPA 508
Cdd:COG3469     86 AAAATSTS---ATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGG 162

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 1831519558  509 PATSATTQPAPATSPTTQPAPATSATTqsvPVVTTQTTMGTSPTTAG 555
Cdd:COG3469    163 TTTTSTTTTTTSASTTPSATTTATATT---ASGATTPSATTTATTTG 206
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
315-446 8.85e-11

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 66.34  E-value: 8.85e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  315 TQPAPATSPTTQPAPATSP-TTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPatsP 393
Cdd:PRK14971   363 TQKGDDASGGRGPKQHIKPvFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN---P 439

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  394 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA--PATSPTTQPAPATSPTTQ 446
Cdd:PRK14971   440 PSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIqeKAEQATGNIKEAPTGTQK 494
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
295-426 1.28e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 65.95  E-value: 1.28e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  295 TQPAPATSPTTQPAPATSP-TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPatsP 373
Cdd:PRK14971   363 TQKGDDASGGRGPKQHIKPvFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN---P 439

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  374 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA--PATSPTTQPAPATSPTTQ 426
Cdd:PRK14971   440 PSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIqeKAEQATGNIKEAPTGTQK 494
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 379-536 1.55e-10

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 65.51  E-value: 1.55e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  379 PATSPTTQPAPATSPTTQPAPAtspttqpAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPttqptpgtsPTTQPA 458
Cdd:PRK14951   366 PAAAAEAAAPAEKKTPARPEAA-------APAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPP---------APVAAP 429

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  459 PATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPAtsattQPAPATSATTQPAPATSPTTQPAPATSATTQ 536
Cdd:PRK14951   430 AAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPA-----VASAAPAPAAAPAAARLTPTEEGDVWHATVQ 502
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
241-347 1.73e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 65.57  E-value: 1.73e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  241 ASTSTQPAPASSP-TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPatsPTTQPAP 319
Cdd:PRK14971   369 ASGGRGPKQHIKPvFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN---PPSTAPQ 445

                           90       100
                   ....*....|....*....|....*...
gi 1831519558  320 ATSPTTQPAPATSPTTQPAPATSPTTQP 347
Cdd:PRK14971   446 AVRPAQFKEEKKIPVSKVSSLGPSTLRP 473
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
352-476 2.02e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 65.18  E-value: 2.02e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  352 SPTTQPTPATSP-TTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPatsPTTQPAPA 430
Cdd:PRK14971   370 SGGRGPKQHIKPvFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN---PPSTAPQA 446

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1831519558  431 TSPTTQPAPATSPTTQPTPGTSPTTQPA--PATSPTTQPSPATNPTTQ 476
Cdd:PRK14971   447 VRPAQFKEEKKIPVSKVSSLGPSTLRPIqeKAEQATGNIKEAPTGTQK 494
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
204-403 2.04e-10

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 65.16  E-value: 2.04e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  204 GNNATDITNDINNVLNITATTLGPTTTTITPTTTVVPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSP 283
Cdd:COG3469     14 GASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATAAAAAATSTS 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  284 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSP 363
Cdd:COG3469     94 ATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGGTTTTSTTTTTT 173

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 1831519558  364 TTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP 403
Cdd:COG3469    174 SASTTPSATTTATATTASGATTPSATTTATTTGPPTPGLP 213
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 407-542 2.19e-10

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 65.27  E-value: 2.19e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  407 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQ 486
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  487 PAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVPVVT 542
Cdd:PRK07994   441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVAT 496
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
385-552 2.41e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 64.80  E-value: 2.41e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  385 TQPAPATSPTTQPAPATSP-TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA--PATSPTTQPTPGTSPTTQPAPAT 461
Cdd:PRK14971   363 TQKGDDASGGRGPKQHIKPvFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSAtqPAGTPPTVSVDPPAAVPVNPPST 442

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  462 SPTTQPSPATNPTTQPSVSSSASTQPapatsGTTQPA-PATSATTQPAPATSATTQPAPATSPTTQPA-PATSATTQSVP 539
Cdd:PRK14971   443 APQAVRPAQFKEEKKIPVSKVSSLGP-----STLRPIqEKAEQATGNIKEAPTGTQKEIFTEEDLQYYwQEFAGTRPQEE 517

                          170
                   ....*....|...
gi 1831519558  540 VVTTQTTMGTSPT 552
Cdd:PRK14971   518 KALKETMINCRPK 530
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
 246-548 2.68e-10

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 65.13  E-value: 2.68e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  246 QPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSptTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT 325
Cdd:PRK14949   475 SSSLDADNSAVPEQIDSTAEQSVVNPSVTDTQVDDTS--ASNNSAADNTVDDNYSAEDTLESNGLDEGDYAQDSAPLDAY 552

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  326 QPApATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPA--------------------------P 379
Cdd:PRK14949   553 QDD-YVAFSSESYNALSDDEQHSANVQSAQSAAEAQPSSQSLSPISAVTTAAAsladddildavlaardsllsdldalsP 631

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  380 ATSPTTQPAPATSPTTQPAPAtspttQPAPATSPTTQPAPATSPTTQPAPATSPtTQPAPATSPTTQPTP-GTSPTTQPA 458
Cdd:PRK14949   632 KEGDGKKSSADRKPKTPPSRA-----PPASLSKPASSPDASQTSASFDLDPDFE-LATHQSVPEAALASGsAPAPPPVPD 705

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  459 PATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSV 538
Cdd:PRK14949   706 PYDRPPWEEAPEVASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQAEAQSPASTTALTQTSSEVQDTELNL 785

                          330
                   ....*....|
gi 1831519558  539 PVVTTQTTMG 548
Cdd:PRK14949   786 VLLSSGSITG 795
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
238-419 2.98e-10

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 64.39  E-value: 2.98e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  238 VVPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP 317
Cdd:COG3469     32 VTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATAAAAAATSTSATLVATSTASGANTGTST 111

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  318 APATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTqP 397
Cdd:COG3469    112 VTTTSTGAGSVTSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGGTTTTSTTTTTTSASTTPSATTTATATT-A 190

                          170       180
                   ....*....|....*....|..
gi 1831519558  398 APATSPTTQPAPATSPTTQPAP 419
Cdd:COG3469    191 SGATTPSATTTATTTGPPTPGL 212
PRK11901 PRK11901
hypothetical protein; Reviewed
 240-405 3.35e-10

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 63.16  E-value: 3.35e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ-----PAPATSPTTQPAPATSPT 314
Cdd:PRK11901    84 SSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAPPQTPNGQqrielPGNISDALSQQQGQVNAA 163

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  315 TQPAPATSPTTQPAPATSPTT----QPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPA 390
Cdd:PRK11901   164 SQNAQGNTSTLPTAPATVAPSkgakVPATAETHPTPPQKPATKKPAVNHHKTATVAVPPATSGKPKSGAASARALSSAPA 243

                          170
                   ....*....|....*
gi 1831519558  391 TSPTTQPAPATSPTT 405
Cdd:PRK11901   244 SHYTLQLSSASRSDT 258
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 239-453 4.61e-10

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 64.72  E-value: 4.61e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  239 VPASTSTQPAPASSPTTQPaPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPa 318
Cdd:PRK10263   363 VPGPQTGEPVIAPAPEGYP-QQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQ- 440

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  319 PATSPTTQPAPATS-----PTTQP-APATSPTTQPTPATSPTTQPTPatsPTTQPTPA---TSPTTQP------------ 377
Cdd:PRK10263   441 PVAGNAWQAEEQQStfapqSTYQTeQTYQQPAAQEPLYQQPQPVEQQ---PVVEPEPVveeTKPARPPlyyfeeveekra 517

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  378 ----------APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAP-ATSPTTQPAPATSPTTQPAPATSPTTQ 446
Cdd:PRK10263   518 rereqlaawyQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKkATLATGAAATVAAPVFSLANSGGPRPQ 597


                   ....*..
gi 1831519558  447 PTPGTSP 453
Cdd:PRK10263   598 VKEGIGP 604
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 291-427 5.35e-10

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 63.59  E-value: 5.35e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  291 TSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSptTQPTPATSPTTQPTP 369
Cdd:PHA03269    17 LIIANLNTNIPIPELHTSAATQkPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAAS--EKFDPAPAPHQAASR 94

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  370 ATSPTTQPAPATSPTTQP--APATSPTTQPAPATSPTTqpapATSPTTQPAPATSPTTQP 427
Cdd:PHA03269    95 APDPAVAPQLAAAPKPDAaeAFTSAAQAHEAPADAGTS----AASKKPDPAAHTQHSPPP 150
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 239-387 5.73e-10

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 63.59  E-value: 5.73e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  239 VPASTSTQPAPASSPTTQPAPATS-PTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAtspttqp 317
Cdd:PHA03269    15 INLIIANLNTNIPIPELHTSAATQkPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPA------- 87

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  318 aPATSPTTQPAPATSPTTQPAPatspttQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQP 387
Cdd:PHA03269    88 -PHQAASRAPDPAVAPQLAAAP------KPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPP 150
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 356-437 6.02e-10

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 64.14  E-value: 6.02e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  356 QPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS-PT 434
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVeDE 116


                   ...
gi 1831519558  435 TQP 437
Cdd:PRK12270   117 VTP 119
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 287-426 6.22e-10

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 63.58  E-value: 6.22e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  287 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPttqPAPATSPTTQPTPATSPTTQPTPAtspttq 366
Cdd:PRK14951   371 EAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAP---PAAAPPAPVAAPAAAAPAAAPAAA------ 441

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831519558  367 PTPATSPTTQPAPATSPTTQPAPATSPttQPAPATS---PTTQPAPATSPTTQPAPATSPTTQ 426
Cdd:PRK14951   442 PAAVALAPAPPAQAAPETVAIPVRVAP--EPAVASAapaPAAAPAAARLTPTEEGDVWHATVQ 502
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 366-447 6.49e-10

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 64.14  E-value: 6.49e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  366 QPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS-PT 444
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVeDE 116


                   ...
gi 1831519558  445 TQP 447
Cdd:PRK12270   117 VTP 119
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 281-417 7.29e-10

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 63.21  E-value: 7.29e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  281 TSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSptTQPTPATSPTTQPTP 359
Cdd:PHA03269    17 LIIANLNTNIPIPELHTSAATQkPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAAS--EKFDPAPAPHQAASR 94

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  360 ATSPTTQPTPATSPTTQP--APATSPTTQPAPATSPTTqpapATSPTTQPAPATSPTTQP 417
Cdd:PHA03269    95 APDPAVAPQLAAAPKPDAaeAFTSAAQAHEAPADAGTS----AASKKPDPAAHTQHSPPP 150
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 256-337 7.37e-10

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 63.76  E-value: 7.37e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  256 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS-PT 334
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVeDE 116


                   ...
gi 1831519558  335 TQP 337
Cdd:PRK12270   117 VTP 119
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 266-347 7.37e-10

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 63.76  E-value: 7.37e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  266 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS-PT 344
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVeDE 116


                   ...
gi 1831519558  345 TQP 347
Cdd:PRK12270   117 VTP 119
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 246-327 8.30e-10

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 63.76  E-value: 8.30e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  246 QPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS-PT 324
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVeDE 116


                   ...
gi 1831519558  325 TQP 327
Cdd:PRK12270   117 VTP 119
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 346-427 8.80e-10

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 63.76  E-value: 8.80e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  346 QPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS-PT 424
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVeDE 116


                   ...
gi 1831519558  425 TQP 427
Cdd:PRK12270   117 VTP 119
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 316-523 1.14e-09

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 63.13  E-value: 1.14e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  316 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATS-----------PTTQ---------PTPATSPTTQPTPATSPTT 375
Cdd:pfam09770  106 QPAARAAQSSAQPPASSLPQYQYASQQSQQPSKPVRTgyekykepepiPDLQvdaslwgvaPKKAAAPAPAPQPAAQPAS 185

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  376 QPAP---------------ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP-AP 439
Cdd:pfam09770  186 LPAPsrkmmsleeveaamrAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPvTI 265

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  440 ATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPT---TQPSVSSSASTQPAPATSGTTQPAPATSATTQPApatSATTQ 516
Cdd:pfam09770  266 LQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTqilQNPNRLSAARVGYPQNPQPGVQPAPAHQAHRQQG---SFGRQ 342


                   ....*..
gi 1831519558  517 PAPATSP 523
Cdd:pfam09770  343 APIITHP 349
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
335-447 1.22e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 62.87  E-value: 1.22e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  335 TQPAPATSPTTQPTPATSP-TTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPatsP 413
Cdd:PRK14971   363 TQKGDDASGGRGPKQHIKPvFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN---P 439

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1831519558  414 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP 447
Cdd:PRK14971   440 PSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRP 473
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 276-357 1.45e-09

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 62.99  E-value: 1.45e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  276 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATS-PT 354
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVeDE 116


                   ...
gi 1831519558  355 TQP 357
Cdd:PRK12270   117 VTP 119
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 311-448 1.59e-09

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 62.05  E-value: 1.59e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  311 TSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSptTQPAPATSPTTQPAP 389
Cdd:PHA03269    17 LIIANLNTNIPIPELHTSAATQkPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAAS--EKFDPAPAPHQAASR 94

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  390 ATSPTTQPAPATSPTtqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPT 448
Cdd:PHA03269    95 APDPAVAPQLAAAPK--PDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPF 151
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 377-457 1.65e-09

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 62.60  E-value: 1.65e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  377 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPgTSPTTQ 456
Cdd:PRK12270    40 STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAA-VEDEVT 118


                   .
gi 1831519558  457 P 457
Cdd:PRK12270   119 P 119
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 271-407 2.06e-09

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 62.05  E-value: 2.06e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  271 TSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSptTQPAPATSPTTQPTP 349
Cdd:PHA03269    17 LIIANLNTNIPIPELHTSAATQkPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAAS--EKFDPAPAPHQAASR 94

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  350 ATSPTTQPTPATSPTTQP--TPATSPTTQPAPATSPTTqpapATSPTTQPAPATSPTTQP 407
Cdd:PHA03269    95 APDPAVAPQLAAAPKPDAaeAFTSAAQAHEAPADAGTS----AASKKPDPAAHTQHSPPP 150
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 336-417 2.18e-09

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 62.22  E-value: 2.18e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  336 QPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS-PT 414
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVeDE 116


                   ...
gi 1831519558  415 TQP 417
Cdd:PRK12270   117 VTP 119
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 306-418 2.21e-09

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 62.22  E-value: 2.21e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  306 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATS-PT 384
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVeDE 116

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1831519558  385 TQP---APATSPTTQPAPATSPTtqpapATSPTTQPA 418
Cdd:PRK12270   117 VTPlrgAAAAVAKNMDASLEVPT-----ATSVRAVPA 148
PHA03247 PHA03247
large tegument protein UL36; Provisional
 278-506 2.35e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 62.26  E-value: 2.35e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  278 APATSPTTQPAPATSP-TTQPAPATSPTTQPAPATSPTTQP------APATSPTTQPAPATSPTTQPAPATSPTTQPTPA 350
Cdd:PHA03247   254 APAPPPVVGEGADRAPeTARGATGPPPPPEAAAPNGAAAPPdgvwgaALAGAPLALPAPPDPPPPAPAGDAEEEDDEDGA 333

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  351 ---TSPTTQPTpATSPTTQPT---PATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATsPT 424
Cdd:PHA03247   334 mevVSPLPRPR-QHYPLGFPKrrrPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAA-PV 411

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  425 TQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSvSSSASTQPAPATSGTTQPAPATSAT 504
Cdd:PHA03247   412 PASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDD-PDDATRKALDALRERRPPEPPGADL 490


                   ..
gi 1831519558  505 TQ 506
Cdd:PHA03247   491 AE 492
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 359-506 2.38e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 61.65  E-value: 2.38e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  359 PATSPTTQPTPATSPTTQPaPATSPTTQPAPATSPTTQPAPAtspttQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA 438
Cdd:PRK14951   366 PAAAAEAAAPAEKKTPARP-EAAAPAAAPVAQAAAAPAPAAA-----PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPA 439

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  439 PATSPTTQPTPGTSPTTQPAPATSPTTQPSPAtnpttQPSVSSSASTQPAPATSGTTQPAPATSATTQ 506
Cdd:PRK14951   440 AAPAAVALAPAPPAQAAPETVAIPVRVAPEPA-----VASAAPAPAAAPAAARLTPTEEGDVWHATVQ 502
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 296-408 2.41e-09

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 62.22  E-value: 2.41e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  296 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATS-PT 374
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVeDE 116

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1831519558  375 TQP---APATSPTTQPAPATSPTtqpapATSPTTQPA 408
Cdd:PRK12270   117 VTPlrgAAAAVAKNMDASLEVPT-----ATSVRAVPA 148
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 286-367 2.49e-09

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 62.22  E-value: 2.49e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  286 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATS-PT 364
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVeDE 116


                   ...
gi 1831519558  365 TQP 367
Cdd:PRK12270   117 VTP 119
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 240-539 2.91e-09

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 61.86  E-value: 2.91e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQPAPA-TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA 318
Cdd:pfam05109  432 PTLNTTGFAAPNTTTGLPSSTHVPTNLTAPAsTGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTS 511

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  319 PATSPTTQPAPATSPTTQPAP-ATSPTTQPTPATSPTTQPTP-ATSPT---TQPTP-ATSPTTQPAPATSPTTQPAP-AT 391
Cdd:pfam05109  512 AVTTPTPNATSPTPAVTTPTPnATSPTLGKTSPTSAVTTPTPnATSPTpavTTPTPnATIPTLGKTSPTSAVTTPTPnAT 591

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  392 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPAT 471
Cdd:pfam05109  592 SPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSMSLRPSSISETLSPSTSDNSTSHMPLLT 671

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  472 N--PTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVP 539
Cdd:pfam05109  672 SahPTGGENITQVTPASTSTHHVSTSSPAPRPGTTSQASGPGNSSTSTKPGEVNVTKGTPPKNATSPQAP 741
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 239-552 3.42e-09

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 61.13  E-value: 3.42e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  239 VPASTSTQPAPASSPTTQPAPATSPTTQ-PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP 317
Cdd:pfam17823   86 VTAEHTPHGTDLSEPATREGAADGAASRaLAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAAIAAA 165

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  318 APATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQP-----TPATSPTTQPAPATSPTTQPAPATS 392
Cdd:pfam17823  166 SAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAatatgHPAAGTALAAVGNSSPAAGTVTAAV 245

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  393 PTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT-----QPAPATSPTTQPTPGTSPTTQPAPATSPTTQP 467
Cdd:pfam17823  246 GTVTPAALATLAAAAGTVASAAGTINMGDPHARRLSPAKHMPSdtmarNPAAPMGAQAQGPIIQVSTDQPVHNTAGEPTP 325

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  468 SPATNPTTQPSVSSSASTQPAPATSGTTQpAPATSATTQPAPATSATTQpAPATSPTTQPAP-------ATSATTQSVPV 540
Cdd:pfam17823  326 SPSNTTLEPNTPKSVASTNLAVVTTTKAQ-AKEPSASPVPVLHTSMIPE-VEATSPTTQPSPllptqgaAGPGILLAPEQ 403

                          330
                   ....*....|..
gi 1831519558  541 VTTQTTMGTSPT 552
Cdd:pfam17823  404 VATEATAGTASA 415
PRK11901 PRK11901
hypothetical protein; Reviewed
 282-475 4.00e-09

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 59.70  E-value: 4.00e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  282 SPTTQPAPATSPTTQPAP------ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTT 355
Cdd:PRK11901    60 SPTEHESQQSSNNAGAEKnidlsgSSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAPPQTPNG 139

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  356 Q-----PTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPatspttQPAPATSPTTQPAPATSPTTQPAPA 430
Cdd:PRK11901   140 QqrielPGNISDALSQQQGQVNAASQNAQGNTSTLPTAPATVAPSKGAK------VPATAETHPTPPQKPATKKPAVNHH 213

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 1831519558  431 TSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTT 475
Cdd:PRK11901   214 KTATVAVPPATSGKPKSGAASARALSSAPASHYTLQLSSASRSDT 258
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 239-317 4.03e-09

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 61.44  E-value: 4.03e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  239 VPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAtSPTTQPAPATSPTTQP 317
Cdd:PRK12270    42 AAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAA-AAAAPAAAAVEDEVTP 119
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 307-399 4.04e-09

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 60.98  E-value: 4.04e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  307 PAPATSPTTQPAPATSPTT-QPAPATSPTTqPAPATSPTTQPTPATSPttQPTPATSPTTQPTPATSPttqPAPATSPTT 385
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRpTPAPSTRPKA-AAAANIPPKEPVRETAT--PPPVPPRPVAPPVPHTPE---SAPKLTRAA 435

                           90
                   ....*....|....
gi 1831519558  386 QPAPATSPTTQPAP 399
Cdd:PRK14950   436 IPVDEKPKYTPPAP 449
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 386-467 4.58e-09

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 61.06  E-value: 4.58e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  386 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATS-PT 464
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVeDE 116


                   ...
gi 1831519558  465 TQP 467
Cdd:PRK12270   117 VTP 119
PHA03379 PHA03379
EBNA-3A; Provisional
 240-531 5.37e-09

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 60.84  E-value: 5.37e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPassPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAP-------ATSPTTQPAPATSPTTQPAPAT- 311
Cdd:PHA03379   409 SEPTYGTPRP---PVEKPRPEVPQSLETATSHGSAQVPEPPPVHDLEPGPlhdqhsmAPCPVAQLPPGPLQDLEPGDQLp 485

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  312 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTP------ATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTT 385
Cdd:PHA03379   486 GVVQDGRPACAPVPAPAGPIVRPWEASLSQVPGVAFAPvmpqpmPVEPVPVPTVALERPVCPAPPLIAMQGPGETSGIVR 565

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  386 QPAPATSPTTQPAPATSPTTQPA--------PATSPTTQPAPATSPTTQPAPATSPTTQPapaTSPTTQPTPGtSPTTQP 457
Cdd:PHA03379   566 VRERWRPAPWTPNPPRSPSQMSVrdrlarlrAEAQPYQASVEVQPPQLTQVSPQQPMEYP---LEPEQQMFPG-SPFSQV 641

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  458 APATS----PTTQPSPATNPTTQPsVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQpAPAT 531
Cdd:PHA03379   642 ADVMRaggvPAMQPQYFDLPLQQP-ISQGAPLAPLRASMGPVPPVPATQPQYFDIPLTEPINQGASAAHFLPQ-QPME 717
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 341-499 5.43e-09

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 60.51  E-value: 5.43e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  341 TSPTTQPTPATSPTTQPTPATSpttQPTPATSPTTQPAPATSPTTQPAPATSPTTQP--APATSPTTQPAPATSPTTQPA 418
Cdd:PHA03269    17 LIIANLNTNIPIPELHTSAATQ---KPDPAPAPHQAASRAPDPAVAPTSAASRKPDLaqAPTPAASEKFDPAPAPHQAAS 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  419 PATSPTTQPAPATSPTtqPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNpTTQPSVSSSASTQPAPATSGTTQPA 498
Cdd:PHA03269    94 RAPDPAVAPQLAAAPK--PDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQ-HSPPPFAYTRSMEHIACTHGGIQFI 170


                   .
gi 1831519558  499 P 499
Cdd:PHA03269   171 P 171
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
245-356 5.58e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 60.56  E-value: 5.58e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  245 TQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPatsPTTQPAPATSPTTQPAPATSPT 324
Cdd:PRK14971   384 TQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN---PPSTAPQAVRPAQFKEEKKIPV 460

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1831519558  325 TQPAPATSPTTQPA--PATSPTTQPTPATSPTTQ 356
Cdd:PRK14971   461 SKVSSLGPSTLRPIqeKAEQATGNIKEAPTGTQK 494
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 357-513 6.23e-09

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 60.26  E-value: 6.23e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  357 PTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT- 435
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKk 440

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  436 -QPAPATSPTTqptpgTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSA 513
Cdd:PRK07994   441 sEPAAASRARP-----VNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAA 514
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 238-527 6.71e-09

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 60.78  E-value: 6.71e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  238 VVPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPAT---SPTTQPAPATSPTTQ---------PAPATSPTT 305
Cdd:TIGR00927  121 ITPTTPKNNYSPTAAGTERVKEDTPATPSRALNHYISTSGRQRVksyTPKPRGEVKSSSPTQtrekvrkytPSPLGRMVN 200

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  306 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQP--TPATSPTTQPTPATSPTTQPAPATSP 383
Cdd:TIGR00927  201 SYAPSTFMTMPRSHGITPRTTVKDSEITATYKMLETNPSKRTAGKTTPTPLKgmTDNTPTFLTREVETDLLTSPRSVVEK 280

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  384 TTQPAPATSPTTQPAPATSPTTQPAPATSPTT--QPAPATSP-------TTQPAPAtspTTQPAPATSPTTQPTPGTS-P 453
Cdd:TIGR00927  281 NTLTTPRRVESNSSTNHWGLVGKNNLTTPQGTvlEHTPATSEgqvtisiMTGSSPA---ETKASTAAWKIRNPLSRTSaP 357

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  454 TTQPAPATSPTTQPSPATNPTT--QPSVSSSASTQ--------PAPATSgtTQPAPATSATTQPapatsATTQPAPATSP 523
Cdd:TIGR00927  358 AVRIASATFRGLEKNPSTAPSTpaTPRVRAVLTTQvhhcvvvkPAPAVP--TTPSPSLTTALFP-----EAPSPSPSALP 430


                   ....
gi 1831519558  524 TTQP 527
Cdd:TIGR00927  431 PGQP 434
PRK11901 PRK11901
hypothetical protein; Reviewed
 322-505 7.75e-09

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 58.93  E-value: 7.75e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  322 SPTTQPAPATSPTTQPAP------ATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTT 395
Cdd:PRK11901    60 SPTEHESQQSSNNAGAEKnidlsgSSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAPPQTPNG 139

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  396 Q-----PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAT-SPTTQPAPATSPTTQPTPGTSPTTQ---PAPATSPTTQ 466
Cdd:PRK11901   140 QqrielPGNISDALSQQQGQVNAASQNAQGNTSTLPTAPATvAPSKGAKVPATAETHPTPPQKPATKkpaVNHHKTATVA 219

                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 1831519558  467 PSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATT 505
Cdd:PRK11901   220 VPPATSGKPKSGAASARALSSAPASHYTLQLSSASRSDT 258
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 336-467 9.73e-09

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 59.74  E-value: 9.73e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  336 QPAPATSPTTQPTP---ATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQP--APATSPTTQPAPATSPTTQPAPA 410
Cdd:PHA03269    16 NLIIANLNTNIPIPelhTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLaqAPTPAASEKFDPAPAPHQAASRA 95

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  411 TSPTTQPAPATSPTtqPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQP 467
Cdd:PHA03269    96 PDPAVAPQLAAAPK--PDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPP 150
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 397-477 1.09e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 59.90  E-value: 1.09e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  397 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPAtSPTTQPSPATNPTTQ 476
Cdd:PRK12270    40 STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAA-AAAAPAAAAVEDEVT 118


                   .
gi 1831519558  477 P 477
Cdd:PRK12270   119 P 119
PHA03247 PHA03247
large tegument protein UL36; Provisional
 238-442 1.40e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.95  E-value: 1.40e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  238 VVPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAP--------ATSPTTQPAPATSPTTQPAPATSPTTQPAP 309
Cdd:PHA03247   253 AAPAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPdgvwgaalAGAPLALPAPPDPPPPAPAGDAEEEDDEDG 332

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  310 A---TSPTTQPApATSPTTQPA---PATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATsP 383
Cdd:PHA03247   333 AmevVSPLPRPR-QHYPLGFPKrrrPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAA-P 410

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  384 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS 442
Cdd:PHA03247   411 VPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDA 469
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 238-339 1.52e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 59.05  E-value: 1.52e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  238 VVPASTSTQPAPASSPTTQPAPATSpTTQPAPATSPTTqPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPttqP 317
Cdd:PRK14950   355 VIEALLVPVPAPQPAKPTAAAPSPV-RPTPAPSTRPKA-AAAANIPPKEPVRETAT--PPPVPPRPVAPPVPHTPE---S 427

                           90       100
                   ....*....|....*....|..
gi 1831519558  318 APATSPTTQPAPATSPTTQPAP 339
Cdd:PRK14950   428 APKLTRAAIPVDEKPKYTPPAP 449
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 297-389 1.68e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 59.05  E-value: 1.68e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  297 PAPATSPTTQPAPATSPTT-QPAPATSPTTqPAPATSPTTQPAPATSPttQPTPATSPTTQPTPATSPttqPTPATSPTT 375
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRpTPAPSTRPKA-AAAANIPPKEPVRETAT--PPPVPPRPVAPPVPHTPE---SAPKLTRAA 435

                           90
                   ....*....|....
gi 1831519558  376 QPAPATSPTTQPAP 389
Cdd:PRK14950   436 IPVDEKPKYTPPAP 449
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 317-409 1.69e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 59.05  E-value: 1.69e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  317 PAPATSPTTQPAPATSPTT-QPAPATSPTTqPTPATSPTTQPTPATSPttQPTPATSPTTQPAPATSPttqPAPATSPTT 395
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRpTPAPSTRPKA-AAAANIPPKEPVRETAT--PPPVPPRPVAPPVPHTPE---SAPKLTRAA 435

                           90
                   ....*....|....
gi 1831519558  396 QPAPATSPTTQPAP 409
Cdd:PRK14950   436 IPVDEKPKYTPPAP 449
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 286-531 1.98e-08

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 58.78  E-value: 1.98e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  286 QPAPATSPTTQPAPA-TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPT 364
Cdd:PLN03209   328 VPPKESDAADGPKPVpTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIPTPPSSSPASSKSVDAVAKP 407

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  365 TQPTPATSPTTqpaPATSPTTQPAPATSPTTQPAP--ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS 442
Cdd:PLN03209   408 AEPDVVPSPGS---ASNVPEVEPAQVEAKKTRPLSpyARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAAT 484

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  443 PTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSA-TTQPAPATSATTQPAPAT 521
Cdd:PLN03209   485 DAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQhHAQPKPRPLSPYTMYEDL 564

                          250
                   ....*....|
gi 1831519558  522 SPTTQPAPAT 531
Cdd:PLN03209   565 KPPTSPTPSP 574
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 240-520 2.07e-08

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 58.93  E-value: 2.07e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSptTQPAPATSPTTQPAP 319
Cdd:PTZ00449   536 DSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEF-PKDPKHPKDPEEPKKP--KRPRSAQRPTRPKSP 612

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  320 ATsPTTQPAPATSPttQPAPATSPTTQPTPatsptTQPTPATSPTTQPTPATS-PTTQPAPATSPT---------TQPAP 389
Cdd:PTZ00449   613 KL-PELLDIPKSPK--RPESPKSPKRPPPP-----QRPSSPERPEGPKIIKSPkPPKSPKPPFDPKfkekfyddyLDAAA 684

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  390 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSP 469
Cdd:PTZ00449   685 KSKETKTTVVLDESFESILKETLPETPGTPFTTP--RPLPPKLPRDEEFPFEPIGDPDAEQPDDIEFFTPPEEERTFFHE 762

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1831519558  470 ATNPTTQPSVSSSASTQPaPATSGTTQPAPATSATTQPAPATSATTQPAPA 520
Cdd:PTZ00449   763 TPADTPLPDILAEEFKEE-DIHAETGEPDEAMKRPDSPSEHEDKPPGDHPS 812
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 338-429 2.42e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 58.28  E-value: 2.42e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  338 APATSPTT-QPTPATSPTTQPTPAtsPTTQPTPATSPTTQPAPA-TSPTTQPAPATSPTTQPAPATSPttqPAPATSPTT 415
Cdd:PRK14950   361 VPVPAPQPaKPTAAAPSPVRPTPA--PSTRPKAAAAANIPPKEPvRETATPPPVPPRPVAPPVPHTPE---SAPKLTRAA 435

                           90
                   ....*....|....
gi 1831519558  416 QPAPATSPTTQPAP 429
Cdd:PRK14950   436 IPVDEKPKYTPPAP 449
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
250-446 2.54e-08

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 58.46  E-value: 2.54e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  250 ASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAT-SPTTQPAPATSPTTQPAPAtsPTTQPA 328
Cdd:PRK12727    57 TARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMiAAMALRQPVSVPRQAPAAA--PVRAAS 134

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  329 PATSPTTQPAPATSPTTQPTPATSPTTQPTP--ATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ 406
Cdd:PRK12727   135 IPSPAAQALAHAAAVRTAPRQEHALSAVPEQlfADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLD 214

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 1831519558  407 PAPAT---SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ 446
Cdd:PRK12727   215 DDGFDlddALPQILPPAALPPIVVAPAAPAALAAVAAAAPAPQ 257
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 397-526 2.55e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 58.28  E-value: 2.55e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  397 PAPATSPTTQPAPATSPTT-QPAPATSPTTqPAPATSPTTQPAPATSPttQPTPGTSPTTQPAPATSPttqPSPATNPTT 475
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRpTPAPSTRPKA-AAAANIPPKEPVRETAT--PPPVPPRPVAPPVPHTPE---SAPKLTRAA 435

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1831519558  476 QPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQ 526
Cdd:PRK14950   436 IPVDEKPKYTPPAPPKEEEKALIADGDVLEQLEAIWKQILRDVPPRSPAVQ 486
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 348-439 2.64e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 58.28  E-value: 2.64e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  348 TPATSPTT-QPTPATSPTTQPTPATSPTTQPAPATSPTTQPaPATSPTTQPAPATSPTTQPAPATSPttqPAPATSPTTQ 426
Cdd:PRK14950   361 VPVPAPQPaKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKE-PVRETATPPPVPPRPVAPPVPHTPE---SAPKLTRAAI 436

                           90
                   ....*....|...
gi 1831519558  427 PAPATSPTTQPAP 439
Cdd:PRK14950   437 PVDEKPKYTPPAP 449
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 327-419 2.80e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 58.28  E-value: 2.80e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  327 PAPATSPTTQPAPATSPTtQPTPAtsPTTQPTPATSPTTQPTPA-TSPTTQPAPATSPTTQPAPATSPttqPAPATSPTT 405
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPV-RPTPA--PSTRPKAAAAANIPPKEPvRETATPPPVPPRPVAPPVPHTPE---SAPKLTRAA 435

                           90
                   ....*....|....
gi 1831519558  406 QPAPATSPTTQPAP 419
Cdd:PRK14950   436 IPVDEKPKYTPPAP 449
PRK11901 PRK11901
hypothetical protein; Reviewed
 251-415 3.01e-08

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 57.00  E-value: 3.01e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  251 SSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP--APATSPT-TQPAPATSPTTQ-----PAPATSPTTQPAPATS 322
Cdd:PRK11901    82 SGSSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQDisAPPISPTpTQAAPPQTPNGQqrielPGNISDALSQQQGQVN 161

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  323 PTTQPAPATSPTTQPAPATSPTT----QPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPA 398
Cdd:PRK11901   162 AASQNAQGNTSTLPTAPATVAPSkgakVPATAETHPTPPQKPATKKPAVNHHKTATVAVPPATSGKPKSGAASARALSSA 241

                          170
                   ....*....|....*..
gi 1831519558  399 PATSPTTQPAPATSPTT 415
Cdd:PRK11901   242 PASHYTLQLSSASRSDT 258
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 407-485 3.23e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 58.36  E-value: 3.23e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  407 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSAST 485
Cdd:PRK12270    40 STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 282-362 3.43e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 58.36  E-value: 3.43e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  282 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPAT 361
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDE 116


                   .
gi 1831519558  362 S 362
Cdd:PRK12270   117 V 117
PHA03377 PHA03377
EBNA-3C; Provisional
 238-526 3.53e-08

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 58.14  E-value: 3.53e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  238 VVPASTSTQPAPASSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT-- 315
Cdd:PHA03377   434 VKTSGRSDEAEQAQSTPERPGPSDQP---SVPVEPAHLTPVEHTTVILHQPPQSPPTVAIKPAPPPSRRRRGACVVYDdd 510

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  316 -------QPAPATSPTTQPA-PATSPTT-------QPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPA 380
Cdd:PHA03377   511 iievidvETTEEEESVTQPAkPHRKVQDgfqrsgrRQKRATPPKVSPSDRGPPKASPPVMAPPSTGPRVMATPSTGPRDM 590

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  381 TSPTTQPApATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPA 460
Cdd:PHA03377   591 APPSTGPR-QQAKCKDGPPASGPHEKQPPSSAPRDMAPSVVRMFLRERLLEQSTGPKPKSFWEMRAGRDGSGIQQEPSSR 669

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  461 TSPTTQPSPAtNPTTQPSV---SSSASTQPAPATSGTTQPAPATSATTQ--------PAPATSATTQPAPATSPTTQ 526
Cdd:PHA03377   670 RQPATQSTPP-RPSWLPSVfvlPSVDAGRAQPSEESHLSSMSPTQPISHeeqpryedPDDPLDLSLHPDQAPPPSHQ 745
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
243-439 3.80e-08

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 57.69  E-value: 3.80e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  243 TSTQPAPASSPTTQPAPAtSPTTQPAPATSPTTQPAPATSPTTQPAPA-----TSPTTQPAPATSPTTQPAPAtsPTTQP 317
Cdd:PRK12727    57 TARSDTPATAAAPAPAPQ-APTKPAAPVHAPLKLSANANMSQRQRVASaaedmIAAMALRQPVSVPRQAPAAA--PVRAA 133

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  318 APATSPTTQPAPATSPTTQPAPATSPTTQPTP--ATSPTTQPTPAtsPTTQPTPATSPTTQPAPATSPTTQPAPATSPTT 395
Cdd:PRK12727   134 SIPSPAAQALAHAAAVRTAPRQEHALSAVPEQlfADFLTTAPVPR--APVQAPVVAAPAPVPAIAAALAAHAAYAQDDDE 211

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 1831519558  396 QPAPATSPTTQ-PAPATSPTTQPAPATSPTTQPAPATSPTTQPAP 439
Cdd:PRK12727   212 QLDDDGFDLDDaLPQILPPAALPPIVVAPAAPAALAAVAAAAPAP 256
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 371-507 3.90e-08

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 57.82  E-value: 3.90e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  371 TSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSptTQPAPATSPTTQPTP 449
Cdd:PHA03269    17 LIIANLNTNIPIPELHTSAATQkPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAAS--EKFDPAPAPHQAASR 94

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  450 GTSPTTQPAPATSPTtqPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQP 507
Cdd:PHA03269    95 APDPAVAPQLAAAPK--PDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPP 150
PHA03247 PHA03247
large tegument protein UL36; Provisional
 258-496 4.22e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 58.41  E-value: 4.22e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  258 APATSPTTQPAPATSP-TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPttqPAPATSPttqPAPATSPTTQ 336
Cdd:PHA03247   254 APAPPPVVGEGADRAPeTARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALP---APPDPPP---PAPAGDAEEE 327

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  337 PA-----PATSPTTQPTpATSPTTQPT---PATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA 408
Cdd:PHA03247   328 DDedgamEVVSPLPRPR-QHYPLGFPKrrrPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTR 406

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  409 PATspttqPAPATSPTtqPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSAST--- 485
Cdd:PHA03247   407 PAA-----PVPASVPT--PAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDAlre 479

                          250
                   ....*....|...
gi 1831519558  486 --QPAPATSGTTQ 496
Cdd:PHA03247   480 rrPPEPPGADLAE 492
rne PRK10811
ribonuclease E; Reviewed
 311-554 4.36e-08

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 58.13  E-value: 4.36e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  311 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATsptTQPTPATSPTTQPTPATSpttQPAPATS-------- 382
Cdd:PRK10811   732 EQSVAEEAVAPVVEETVAAEPVVQEVPAPRTELVKVPLPVV---AQTAPEQDEENNAENRDN---NGMPRRSrrsprhlr 805

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  383 --------------PTTQPAPATSPTTQPAPATS------PTTQPAPATSPTTQPAPATspttQPAPATSPTTQPAPATS 442
Cdd:PRK10811   806 vsgqrrrryrderyPTQSPMPLTVACASPEMASGkvwiryPVVRPQDVQVEEQREAEEV----QVQPVVAEVPVAAAVEP 881

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  443 PTTQPTPGTSPTTQPAPATSPTTQPSPATN-PTTQPSVSSsastqpAPATsgtTQPAPATSATTQPAPATSATTQPAPAT 521
Cdd:PRK10811   882 VVSAPVVEAVAEVVEEPVVVAEPQPEEVVVvETTHPEVIA------APVT---EQPQVITESDVAVAQEVAEHAEPVVEP 952

                          250       260       270
                   ....*....|....*....|....*....|...
gi 1831519558  522 SPTTQPAPATSATTQSVPVVTTQTTMGTSPTTA 554
Cdd:PRK10811   953 QDETADIEEAAETAEVVVAEPEVVAQPAAPVVA 985
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
251-430 4.37e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 57.67  E-value: 4.37e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  251 SSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPA 330
Cdd:PRK14948   361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT---PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPP 437

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  331 TS---------------PTTQ-------------PAPAT------------SPTTQPTPA---------------TSPTT 355
Cdd:PRK14948   438 SLnleelwqqilaklelPSTRmllsqqaelvsldSNRAViavspnwlgmvqSRKPLLEQAfakvlgrsiklnlesQSGSA 517

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  356 QPTPATSPTTQPTPATSPTTQPAPatsPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPA 430
Cdd:PRK14948   518 SNTAKTPPPPQKSPPPPAPTPPLP---QPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPT 589
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
247-420 5.15e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 57.28  E-value: 5.15e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  247 PAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSP---TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS- 322
Cdd:PRK14948   361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTkqaATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLn 440

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  323 --------------PTT-----QPA-----PATSPTTQPAPA------------------------------TSPTTQPT 348
Cdd:PRK14948   441 leelwqqilaklelPSTrmllsQQAelvslDSNRAVIAVSPNwlgmvqsrkplleqafakvlgrsiklnlesQSGSASNT 520

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  349 PATSPTTQPTPATSPTTQPTPatsPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPA 420
Cdd:PRK14948   521 AKTPPPPQKSPPPPAPTPPLP---QPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPT 589
PHA03247 PHA03247
large tegument protein UL36; Provisional
 241-446 5.38e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 58.03  E-value: 5.38e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  241 ASTSTQPAPASSPTTQPAPATSPTTQP------APATSPTTQPAPATSPTTQPAPATSPTTQPAPA---TSPTTQPA--- 308
Cdd:PHA03247   268 APETARGATGPPPPPEAAAPNGAAAPPdgvwgaALAGAPLALPAPPDPPPPAPAGDAEEEDDEDGAmevVSPLPRPRqhy 347

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  309 PATSPTTQPAPATSPTT--------QPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPA 380
Cdd:PHA03247   348 PLGFPKRRRPTWTPPSSledlsagrHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASA 427

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  381 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSpTTQPAPATSPTTQPAPATSPTTQ 446
Cdd:PHA03247   428 PPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDA-TRKALDALRERRPPEPPGADLAE 492
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 247-358 5.40e-08

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 57.43  E-value: 5.40e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  247 PAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSptTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP--APATSPT 324
Cdd:PHA03269    44 PAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAAS--EKFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAaeAFTSAAQ 121

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1831519558  325 TQPAPATSPTTqpapATSPTTQPTPATSPTTQPT 358
Cdd:PHA03269   122 AHEAPADAGTS----AASKKPDPAAHTQHSPPPF 151
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 246-472 5.72e-08

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 57.24  E-value: 5.72e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  246 QPAPASSPTTQPAPA-TSPTTQPAPATSPTTQPAPATSPTTQP-APATS-----PTTQPAPaTSPTTQPAPATSPTTQPA 318
Cdd:PLN03209   328 VPPKESDAADGPKPVpTKPVTPEAPSPPIEEEPPQPKAVVPRPlSPYTAyedlkPPTSPIP-TPPSSSPASSKSVDAVAK 406

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  319 PATsPTTQPAPATSPT---TQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTT 395
Cdd:PLN03209   407 PAE-PDVVPSPGSASNvpeVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATD 485

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  396 QPAPATSPTTQPAPAT-----SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPAT--------S 462
Cdd:PLN03209   486 AAAPPPANMRPLSPYAvyddlKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRPLSpytmyedlK 565

                          250
                   ....*....|
gi 1831519558  463 PTTQPSPATN 472
Cdd:PLN03209   566 PPTSPTPSPV 575
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 257-349 6.54e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 57.13  E-value: 6.54e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  257 PAPATSPTTQPAPATSPTT-QPAPATSPTTqPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPttqPAPATSPTT 335
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRpTPAPSTRPKA-AAAANIPPKEPVRETAT--PPPVPPRPVAPPVPHTPE---SAPKLTRAA 435

                           90
                   ....*....|....
gi 1831519558  336 QPAPATSPTTQPTP 349
Cdd:PRK14950   436 IPVDEKPKYTPPAP 449
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 423-540 6.91e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 57.21  E-value: 6.91e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  423 PTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATsgttqPAPATS 502
Cdd:PRK12270    40 STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAP-----AAAAVE 114

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1831519558  503 ATTQP---APATSATTQPAPATSPTtqpapATSATTqsVPV 540
Cdd:PRK12270   115 DEVTPlrgAAAAVAKNMDASLEVPT-----ATSVRA--VPA 148
PRK11633 PRK11633
cell division protein DedD; Provisional
 346-448 7.43e-08

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 54.62  E-value: 7.43e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  346 QPTPATSPTTQPTPatsptTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPatSPTTQPAPATSPTT 425
Cdd:PRK11633    51 DEPDMMPAATQALP-----TQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKP--KPVEKPKPKPKPQQ 123

                           90       100
                   ....*....|....*....|...
gi 1831519558  426 QPAPATSPTTQPAPATSPTTQPT 448
Cdd:PRK11633   124 KVEAPPAPKPEPKPVVEEKAAPT 146
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 287-379 7.49e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 56.74  E-value: 7.49e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  287 PAPATSPTTQPAPATSPTT-QPAPATSPTTqPAPATSPTTQPAPATSPttQPAPATSPTTQPTPATSPttqPTPATSPTT 365
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRpTPAPSTRPKA-AAAANIPPKEPVRETAT--PPPVPPRPVAPPVPHTPE---SAPKLTRAA 435

                           90
                   ....*....|....
gi 1831519558  366 QPTPATSPTTQPAP 379
Cdd:PRK14950   436 IPVDEKPKYTPPAP 449
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 409-543 9.02e-08

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 56.65  E-value: 9.02e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  409 PATSPTTQPAPATSPTTQPAPAtspttqpAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTtqPSVSSSASTQPA 488
Cdd:PRK14951   366 PAAAAEAAAPAEKKTPARPEAA-------APAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA--PVAAPAAAAPAA 436

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  489 PATSGTTQPAPATSATTQPAPATSA---TTQPAPAtspTTQPAPATSATTQSVPVVTT 543
Cdd:PRK14951   437 APAAAPAAVALAPAPPAQAAPETVAipvRVAPEPA---VASAAPAPAAAPAAARLTPT 491
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 267-359 1.00e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 56.36  E-value: 1.00e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  267 PAPATSPTTQPAPATSPTT-QPAPATSPTTqPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPttqPAPATSPTT 345
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRpTPAPSTRPKA-AAAANIPPKEPVRETAT--PPPVPPRPVAPPVPHTPE---SAPKLTRAA 435

                           90
                   ....*....|....
gi 1831519558  346 QPTPATSPTTQPTP 359
Cdd:PRK14950   436 IPVDEKPKYTPPAP 449
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 238-346 1.11e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 56.26  E-value: 1.11e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  238 VVPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAtspttQP 317
Cdd:PRK14951   399 AAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPA-----VA 473

                           90       100
                   ....*....|....*....|....*....
gi 1831519558  318 APATSPTTQPAPATSPTTQPAPATSPTTQ 346
Cdd:PRK14951   474 SAAPAPAAAPAAARLTPTEEGDVWHATVQ 502
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 456-552 1.15e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 56.82  E-value: 1.15e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  456 QPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATT 535
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDE 116

                           90       100
                   ....*....|....*....|...
gi 1831519558  536 QSV---PVVTTQTTMGTS---PT 552
Cdd:PRK12270   117 VTPlrgAAAAVAKNMDASlevPT 139
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
239-436 1.23e-07

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 56.15  E-value: 1.23e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  239 VPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPA-----TSPTTQPAPATSPTTQPAPAtsPTTQPAPATSP 313
Cdd:PRK12727    62 TPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASaaedmIAAMALRQPVSVPRQAPAAA--PVRAASIPSPA 139

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  314 TTQPAPATSPTTQPAPATSPTTQPAP--ATSPTTQPTPAtsPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPAT 391
Cdd:PRK12727   140 AQALAHAAAVRTAPRQEHALSAVPEQlfADFLTTAPVPR--APVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDG 217

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 1831519558  392 SPTTQPAPatsPTTQPAPAtsPTTQPAPATSPTTQPAPATSPTTQ 436
Cdd:PRK12727   218 FDLDDALP---QILPPAAL--PPIVVAPAAPAALAAVAAAAPAPQ 257
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
435-555 1.30e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 55.94  E-value: 1.30e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  435 TQPAPATSPTTQPTPGTSP-TTQPAPATspttQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSA 513
Cdd:PRK14971   363 TQKGDDASGGRGPKQHIKPvFTQPAAAP----QPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN 438

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1831519558  514 TTQPAPATSPTTQPAPATSATTQSVPVVTTQTTMGTSPTTAG 555
Cdd:PRK14971   439 PPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQ 480
PRK10856 PRK10856
cytoskeleton protein RodZ;
239-328 1.33e-07

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 55.03  E-value: 1.33e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  239 VPASTSTQPAPASSPTtqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA 318
Cdd:PRK10856   162 VPLDTSTTTDPATTPA--PAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPT 239

                           90
                   ....*....|
gi 1831519558  319 PATSPTTQPA 328
Cdd:PRK10856   240 DQAGVSTPAA 249
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
272-440 1.34e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 56.12  E-value: 1.34e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  272 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPAT 351
Cdd:PRK14948   362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT---PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPS 438

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  352 S---------------PTTQ-------------PTPAT-------------------------------------SPTTQ 366
Cdd:PRK14948   439 LnleelwqqilaklelPSTRmllsqqaelvsldSNRAViavspnwlgmvqsrkplleqafakvlgrsiklnlesqSGSAS 518

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  367 PTPATSPTTQPAPATSPTTQPAPatsPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPA 440
Cdd:PRK14948   519 NTAKTPPPPQKSPPPPAPTPPLP---QPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPT 589
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
312-478 1.36e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 56.12  E-value: 1.36e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  312 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPttqPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPAT 391
Cdd:PRK14948   362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT---PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPS 438

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  392 S---------------PTTQ------------------------------------------------------PAPATS 402
Cdd:PRK14948   439 LnleelwqqilaklelPSTRmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnlesQSGSAS 518

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  403 PTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPatSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPS 478
Cdd:PRK14948   519 NTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPP--PPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDS 592
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 403-481 1.41e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 56.44  E-value: 1.41e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  403 PTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSS 481
Cdd:PRK12270    40 STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
282-449 1.48e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 56.12  E-value: 1.48e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  282 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATsPTTQPAPATSPTTQPAPATSPTTQPTPatSPTTQPTPAT 361
Cdd:PRK14948   362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAA-TTPSPPPAKASPPIPVPAEPTEPSPTP--PANAANAPPS 438

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  362 S---------------PTTQ----------------PTPATSP-----------------------------TTQPAPAT 381
Cdd:PRK14948   439 LnleelwqqilaklelPSTRmllsqqaelvsldsnrAVIAVSPnwlgmvqsrkplleqafakvlgrsiklnlESQSGSAS 518

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  382 SPTTQPAPATSPTTQPAPAT--SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTP 449
Cdd:PRK14948   519 NTAKTPPPPQKSPPPPAPTPplPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSP 588
rne PRK10811
ribonuclease E; Reviewed
 246-546 1.61e-07

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 56.20  E-value: 1.61e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  246 QPA------PASSPTTQPAPATSPTTQPAPATSPTTQPAP---------------ATSPTTQPAPATSPTTQPAPATSP- 303
Cdd:PRK10811   526 QPAlatfamPDVPPAPTPAEPAAPVVAAAPKAAAATPPAQpgllsrffgalkalfSGGEETKPQEQPAPKAEAKPERQQd 605

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  304 ----------------------------------------TTQPAPATSPTTQPAPATSPTTQPAPATSP---------- 333
Cdd:PRK10811   606 rrkprqnnrrdrnerrdtrdnrtrregrenreenrrnrrqAQQQTAETRESQQAEVTEKARTQDEQQQAPrrerqrrrnd 685

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  334 ----TTQPAPATSPTTQPTPATSPTTQPTPA---------------TSPTTQPTPATSPTTQPAPATSPTTQPAPATSPT 394
Cdd:PRK10811   686 ekrqAQQEAKALNVEEQSVQETEQEERVQQVqprrkqrqlnqkvriEQSVAEEAVAPVVEETVAAEPVVQEVPAPRTELV 765

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  395 TQPAPATsptTQPAPATSPTTQPAPATS-----------------------------PTTQPAPATSPTTQPAPATS--- 442
Cdd:PRK10811   766 KVPLPVV---AQTAPEQDEENNAENRDNngmprrsrrsprhlrvsgqrrrryrderyPTQSPMPLTVACASPEMASGkvw 842

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  443 ---PTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPAtsgtTQPAPATSATTQPAPATS-ATTQPA 518
Cdd:PRK10811   843 iryPVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAE----VVEEPVVVAEPQPEEVVVvETTHPE 918

                          410       420
                   ....*....|....*....|....*...
gi 1831519558  519 PATSPTTQPAPATSATTQSVPVVTTQTT 546
Cdd:PRK10811   919 VIAAPVTEQPQVITESDVAVAQEVAEHA 946
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 437-545 1.82e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 55.64  E-value: 1.82e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  437 PAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQ 516
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440

                           90       100
                   ....*....|....*....|....*....
gi 1831519558  517 PAPATSPTTQPAPATSATTQSVPVVTTQT 545
Cdd:PRK07994   441 SEPAAASRARPVNSALERLASVRPAPSAL 469
PRK10856 PRK10856
cytoskeleton protein RodZ;
294-378 2.00e-07

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 54.65  E-value: 2.00e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  294 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSP 373
Cdd:PRK10856   165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGV 244


                   ....*
gi 1831519558  374 TTQPA 378
Cdd:PRK10856   245 STPAA 249
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 367-459 2.06e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 55.59  E-value: 2.06e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  367 PTPATSPTTQPAPATSPTT-QPAPATSPTTqPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPttqPAPATSPTT 445
Cdd:PRK14950   362 PVPAPQPAKPTAAAPSPVRpTPAPSTRPKA-AAAANIPPKEPVRETAT--PPPVPPRPVAPPVPHTPE---SAPKLTRAA 435

                           90
                   ....*....|....
gi 1831519558  446 QPTPGTSPTTQPAP 459
Cdd:PRK14950   436 IPVDEKPKYTPPAP 449
PRK11633 PRK11633
cell division protein DedD; Provisional
 356-449 2.06e-07

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 53.47  E-value: 2.06e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  356 QPTPATSPTTQPTPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT 435
Cdd:PRK11633    51 DEPDMMPAATQALPTQPPEGAAEAVRAGDA-AAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPP 129

                           90
                   ....*....|....
gi 1831519558  436 QPAPATSPTTQPTP 449
Cdd:PRK11633   130 APKPEPKPVVEEKA 143
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
378-554 2.07e-07

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 55.53  E-value: 2.07e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  378 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQP 457
Cdd:COG3469      5 STAASPTAGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATA 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  458 APATSPTTQPSPATNPTTQPSVSSSASTQPAPATSG---TTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSAT 534
Cdd:COG3469     85 AAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGsvtSTTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGGTT 164

                          170       180
                   ....*....|....*....|
gi 1831519558  535 TQSVPVVTTQTTMGTSPTTA 554
Cdd:COG3469    165 TTSTTTTTTSASTTPSATTT 184
PRK11901 PRK11901
hypothetical protein; Reviewed
 352-536 2.17e-07

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 54.30  E-value: 2.17e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  352 SPTTQPTPATSPTTQP------TPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT 425
Cdd:PRK11901    60 SPTEHESQQSSNNAGAeknidlSGSSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAPPQTPNG 139

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  426 Q-----PAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSgttqpaPA 500
Cdd:PRK11901   140 QqrielPGNISDALSQQQGQVNAASQNAQGNTSTLPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVN------HH 213

                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 1831519558  501 TSATTQPAPATSATTQPAPATSPTTQPAPATSATTQ 536
Cdd:PRK11901   214 KTATVAVPPATSGKPKSGAASARALSSAPASHYTLQ 249
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
304-489 2.18e-07

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 55.38  E-value: 2.18e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  304 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPA-----TSPTTQPTPATSPTTQPTPAtsPTTQPA 378
Cdd:PRK12727    57 TARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASaaedmIAAMALRQPVSVPRQAPAAA--PVRAAS 134

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  379 PATSPTTQPAPATSPTTQPAPATSPTTQP------APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP----- 447
Cdd:PRK12727   135 IPSPAAQALAHAAAVRTAPRQEHALSAVPeqlfadFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDdeqld 214

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1831519558  448 TPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAP 489
Cdd:PRK12727   215 DDGFDLDDALPQILPPAALPPIVVAPAAPAALAAVAAAAPAP 256
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 323-543 2.19e-07

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 55.32  E-value: 2.19e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  323 PTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPaTSPTTQPAPATSPTTQPAPATSPTTQPAPATS 402
Cdd:PLN03209   324 PSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRP-LSPYTAYEDLKPPTSPIPTPPSSSPASSKSVD 402

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  403 PTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPttqpapatSPTTQPSPATNPTTQPSVSSS 482
Cdd:PLN03209   403 AVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSP--------SPTAPTGVSPSVSSTSSVPAV 474

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1831519558  483 ASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVPVVTT 543
Cdd:PLN03209   475 PDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNS 535
motB PRK12799
flagellar motor protein MotB; Reviewed
 391-516 2.74e-07

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 54.72  E-value: 2.74e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  391 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT-QPTPGTSPTTQPAPATSP-TTQPS 468
Cdd:PRK12799   298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGvLPSDVTLPGTVALPAAEPvNMQPQ 377

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1831519558  469 PATNPTTQPSVSSSAstqpAPATSGTTQPAPATSATTQPAPATSATTQ 516
Cdd:PRK12799   378 PMSTTETQQSSTGNI----TSTANGPTTSLPAAPASNIPVSPTSRDAQ 421
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 358-449 2.75e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 55.20  E-value: 2.75e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  358 TPATSPTT-QPTPATSPTTQPAPATSPTTQPAPATSPTTQPaPATSPTTQPAPATSPTTQPAPATSPttqPAPATSPTTQ 436
Cdd:PRK14950   361 VPVPAPQPaKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKE-PVRETATPPPVPPRPVAPPVPHTPE---SAPKLTRAAI 436

                           90
                   ....*....|...
gi 1831519558  437 PAPATSPTTQPTP 449
Cdd:PRK14950   437 PVDEKPKYTPPAP 449
PRK10856 PRK10856
cytoskeleton protein RodZ;
314-398 3.15e-07

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 53.88  E-value: 3.15e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  314 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSP 393
Cdd:PRK10856   165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGV 244


                   ....*
gi 1831519558  394 TTQPA 398
Cdd:PRK10856   245 STPAA 249
dnaA PRK14086
chromosomal replication initiator protein DnaA;
241-433 3.25e-07

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 54.83  E-value: 3.25e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  241 ASTSTQPAPASSPTTQPAPATSPTTQPAPATSP----TTQPAPATSPTTQPAPaTSPTTQPA-PATSPTTQPAPATsptt 315
Cdd:PRK14086    85 AITVDPSAGEPAPPPPHARRTSEPELPRPGRRPyegyGGPRADDRPPGLPRQD-QLPTARPAyPAYQQRPEPGAWP---- 159

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  316 qPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPaPATSPTTQPAPATSPTT 395
Cdd:PRK14086   160 -RAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDR-PRRDRTDRPEPPPGAGH 237

                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 1831519558  396 QPAPATSPTTQPAPATSPTTQPAPaTSPTTQPAPATSP 433
Cdd:PRK14086   238 VHRGGPGPPERDDAPVVPIRPSAP-GPLAAQPAPAPGP 274
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 242-553 3.42e-07

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 54.58  E-value: 3.42e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  242 STSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQpapATSPTTQPAPATSPTTQ-PAPATSPTTQPAPA 320
Cdd:pfam17823   52 NKSSEQ*NFCAATAAPAPVTLTKGTSAAHLNSTEVTAEHTPHGTD---LSEPATREGAADGAASRaLAAAASSSPSSAAQ 128

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  321 TSPTTQPAPATSPTTQP------APATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPA---- 390
Cdd:pfam17823  129 SLPAAIAALPSEAFSAPraaacrANASAAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSAPAtltp 208

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  391 -----TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTT 465
Cdd:pfam17823  209 argisTAATATGHPAAGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPHARRLSPAKHMPS 288

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  466 -----QPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVPV 540
Cdd:pfam17823  289 dtmarNPAAPMGAQAQGPIIQVSTDQPVHNTAGEPTPSPSNTTLEPNTPKSVASTNLAVVTTTKAQAKEPSASPVPVLHT 368

                          330
                   ....*....|...
gi 1831519558  541 VTTQTTMGTSPTT 553
Cdd:pfam17823  369 SMIPEVEATSPTT 381
PRK11633 PRK11633
cell division protein DedD; Provisional
 256-356 3.77e-07

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 52.70  E-value: 3.77e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  256 QPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT 335
Cdd:PRK11633    51 DEPDMMPAATQALPTQPPEGAAEAVRAGDA-AAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPP 129

                           90       100
                   ....*....|....*....|.
gi 1831519558  336 QPAPATSPTTQPTPAtsPTTQ 356
Cdd:PRK11633   130 APKPEPKPVVEEKAA--PTGK 148
Hamartin pfam04388
Hamartin protein; This family includes the hamartin protein which is thought to function as a ...
 290-456 3.82e-07

Hamartin protein; This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein pfam03542. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterized by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation either TSC1 or TSC2 tumour suppressor gene. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin pfam03542. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking.


Pssm-ID: 461287 [Multi-domain]  Cd Length: 730  Bit Score: 54.68  E-value: 3.82e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  290 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ---PTPATSPTTQPTPAT--SPT 364
Cdd:pfam04388  278 ASPYTDQQSSYGSSTSTPSSTPRLQLSSSSGTSPPYLSPPSIRLKTDSFPLWSPSSVcgmTTPPTSPGMVPTTPSelSPS 357

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  365 TQPTPATSPTTQPAPA-TSPTTQPAPATSPTTQPAPATSPTTQPA-PATSPTTQPAPATSPTTQPAPATSPTTQPAPATS 442
Cdd:pfam04388  358 SSHLSSRGSSPPEAAGeATPETTPAKDSPYLKQPPPLSDSHVHRAlPASSQPSSPPRKDGRSQSSFPPLSKQAPTNPNSR 437

                          170
                   ....*....|....
gi 1831519558  443 PTTQPTPGTSPTTQ 456
Cdd:pfam04388  438 GLLEPPGDKSSVTL 451
PRK11633 PRK11633
cell division protein DedD; Provisional
 266-366 3.84e-07

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 52.70  E-value: 3.84e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  266 QPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT 345
Cdd:PRK11633    51 DEPDMMPAATQALPTQPPEGAAEAVRAGDA-AAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPP 129

                           90       100
                   ....*....|....*....|.
gi 1831519558  346 QPTPATSPTTQPTPAtsPTTQ 366
Cdd:PRK11633   130 APKPEPKPVVEEKAA--PTGK 148
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 247-487 3.97e-07

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 55.00  E-value: 3.97e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  247 PAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA--PATSPTTQPAPATSPT 324
Cdd:TIGR00927  192 PSPLGRMVNSYAPSTFMTMPRSHGITPRTTVKDSEITATYKMLETNPSKRTAGKTTPTPLKGmtDNTPTFLTREVETDLL 271

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  325 TQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTT--QPTPATSpttQPAPATSPTTQPAPAtspTTQPAPATS 402
Cdd:TIGR00927  272 TSPRSVVEKNTLTTPRRVESNSSTNHWGLVGKNNLTTPQGTvlEHTPATS---EGQVTISIMTGSSPA---ETKASTAAW 345

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  403 PTTQPAPATS-PTTQPAPATSPTTQPAPATSPTTQPAPA--TSPTTQ--------PTPGTSPTTQPAPATS---PTTQPS 468
Cdd:TIGR00927  346 KIRNPLSRTSaPAVRIASATFRGLEKNPSTAPSTPATPRvrAVLTTQvhhcvvvkPAPAVPTTPSPSLTTAlfpEAPSPS 425

                          250
                   ....*....|....*....
gi 1831519558  469 PATNPTTQPSVSSSASTQP 487
Cdd:TIGR00927  426 PSALPPGQPDLHPKAEYPP 444
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
240-410 4.00e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 54.58  E-value: 4.00e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQPAPATSP---TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS---- 312
Cdd:PRK14948   364 FISEIANASAPANPTPAPNPSPPPAPIQPSAPKTkqaATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLnlee 443

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  313 -----------PTT-----QPA-----PATSPTTQPAPA------------------------------TSPTTQPAPAT 341
Cdd:PRK14948   444 lwqqilaklelPSTrmllsQQAelvslDSNRAVIAVSPNwlgmvqsrkplleqafakvlgrsiklnlesQSGSASNTAKT 523

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  342 SPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPA 410
Cdd:PRK14948   524 PPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS---PPPPIPEEPTPSPT 589
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 318-539 4.17e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 54.71  E-value: 4.17e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  318 APATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQP 397
Cdd:PRK08691   359 APLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWED 438

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  398 APatSPTTQPAPatsptTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPAtspttQPSPATNPTTQP 477
Cdd:PRK08691   439 AP--DEAQTAAG-----TAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPI-----QATPNDEAVETE 506

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  478 SVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVP 539
Cdd:PRK08691   507 TFAHEAPAEPFYGYGFPDNDCPPEDGAEIPPPDWEHAAPADTAGGGADEEAEAGGIGGNNTP 568
PRK11633 PRK11633
cell division protein DedD; Provisional
 336-430 4.41e-07

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 52.31  E-value: 4.41e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  336 QPAPATSPTTQPTPATSP-----TTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPA 410
Cdd:PRK11633    51 DEPDMMPAATQALPTQPPegaaeAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPA 130

                           90       100
                   ....*....|....*....|
gi 1831519558  411 TSPTTQPAPAtsptTQPAPA 430
Cdd:PRK11633   131 PKPEPKPVVE----EKAAPT 146
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 446-547 4.67e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 54.51  E-value: 4.67e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  446 QPTPGTSPTTQPAPATSPTTQPSPAtnPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPA---TS 522
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAA--PAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAaaaVE 114

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1831519558  523 PTTQP---APATSATTQ----SVPVVTTQTTM 547
Cdd:PRK12270   115 DEVTPlrgAAAAVAKNMdaslEVPTATSVRAV 146
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 240-338 4.75e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 54.51  E-value: 4.75e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAtSPTTQPAPATSPTTQP---APATSPTTQ 316
Cdd:PRK12270    53 AAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAA-AAAAPAAAAVEDEVTPlrgAAAAVAKNM 131

                           90       100
                   ....*....|....*....|..
gi 1831519558  317 PAPATSPTtqpapATSPTTQPA 338
Cdd:PRK12270   132 DASLEVPT-----ATSVRAVPA 148
FimV COG3170
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
240-526 4.77e-07

Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];


Pssm-ID: 442403 [Multi-domain]  Cd Length: 508  Bit Score: 54.03  E-value: 4.77e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPApatSPTTQPAPATSPTTQPAPATSPTTQPAPATSptTQPAPATSPTTQPAPATSPTTQPAP 319
Cdd:COG3170    107 PAYAAAAAAPAAAPAPAPA---APAAAAAAADQPAAEAAPAASGEYYPVRPGD--TLWSIAARPVRPSSGVSLDQMMVAL 181

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  320 ATSpttQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAP 399
Cdd:COG3170    182 YRA---NPDAFIDGNINRLKAGAVLRVPAAEEVAALSPAEARQEVQAQSADWAAYRARLAAAVEPAPAAAAPAAPPAAAA 258

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  400 ATSPTTQPAPAT-SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPtTQPSPATNPTTQPS 478
Cdd:COG3170    259 AAGPVPAAAEDTlSPEVTAAAAAEEADALPEAAAELAERLAALEAQLAELQRLLALKNPAPAAAV-SAPAAAAAAATVEA 337

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*...
gi 1831519558  479 VSSSASTQPAPAtsgttQPAPATSATTQPAPATSATTQPAPATSPTTQ 526
Cdd:COG3170    338 AAPAAAAQPAAA-----APAPALDNPLLLAGLLRRRKAEADEVDPVAE 380
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 406-518 4.91e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 54.51  E-value: 4.91e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  406 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPsvsssast 485
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAP-------- 108

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1831519558  486 qPAPATSGTTQP---APATSATTQPA----P-ATSATTQPA 518
Cdd:PRK12270   109 -AAAAVEDEVTPlrgAAAAVAKNMDAslevPtATSVRAVPA 148
PHA03377 PHA03377
EBNA-3C; Provisional
 249-552 4.92e-07

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 54.67  E-value: 4.92e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  249 PASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP-TTQPAPATSPTTQPAPATSPTTQPAPATSP---- 323
Cdd:PHA03377   553 PKVSPSDRGPPKASPPVMAPPSTGPRVMATPSTGPRDMAPPSTGPrQQAKCKDGPPASGPHEKQPPSSAPRDMAPSvvrm 632

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  324 ---------TTQPAP-----------ATSPTTQPAPATSPTTQPT---PATSPTTQPTPATsPTTQPTPATSPTTQPAPA 380
Cdd:PHA03377   633 flrerlleqSTGPKPksfwemragrdGSGIQQEPSSRRQPATQSTpprPSWLPSVFVLPSV-DAGRAQPSEESHLSSMSP 711

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  381 TSPTTQ--------PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ---PAPATSPTTQPAPATSPTTQPTP 449
Cdd:PHA03377   712 TQPISHeeqpryedPDDPLDLSLHPDQAPPPSHQAPYSGHEEPQAQQAPYPGYWeprPPQAPYLGYQEPQAQGVQVSSYP 791

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  450 GTSPTTQPAP------------ATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQP 517
Cdd:PHA03377   792 GYAGPWGLRAqhpryrhswaywSQYPGHGHPQGPWAPRPPHLPPQWDGSAGHGQDQVSQFPHLQSETGPPRLQLSQVPQL 871

                          330       340       350
                   ....*....|....*....|....*....|....*
gi 1831519558  518 APATSPTTQPAPATSATTQSVPVVTTQTTMGTSPT 552
Cdd:PHA03377   872 PYSQTLVSSSAPSWSSPQPRAPIRPIPTRFPPPPM 906
PRK11633 PRK11633
cell division protein DedD; Provisional
 276-376 4.93e-07

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 52.31  E-value: 4.93e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  276 QPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTT 355
Cdd:PRK11633    51 DEPDMMPAATQALPTQPPEGAAEAVRAGDA-AAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPP 129

                           90       100
                   ....*....|....*....|.
gi 1831519558  356 QPTPATSPTTQPTPAtsPTTQ 376
Cdd:PRK11633   130 APKPEPKPVVEEKAA--PTGK 148
PRK10856 PRK10856
cytoskeleton protein RodZ;
304-388 4.94e-07

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 53.49  E-value: 4.94e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  304 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSP 383
Cdd:PRK10856   165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGV 244


                   ....*
gi 1831519558  384 TTQPA 388
Cdd:PRK10856   245 STPAA 249
PRK11633 PRK11633
cell division protein DedD; Provisional
 286-388 6.04e-07

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 51.93  E-value: 6.04e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  286 QPAPATSPTTQPAPatsptTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPatSPTTQPTPATSPTT 365
Cdd:PRK11633    51 DEPDMMPAATQALP-----TQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKP--KPVEKPKPKPKPQQ 123

                           90       100
                   ....*....|....*....|...
gi 1831519558  366 QPTPATSPTTQPAPATSPTTQPA 388
Cdd:PRK11633   124 KVEAPPAPKPEPKPVVEEKAAPT 146
PHA03379 PHA03379
EBNA-3A; Provisional
 247-496 6.20e-07

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 54.29  E-value: 6.20e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  247 PAPASSPTTQPAPATSPTT------QPAPATSPTTQPAP------ATSPTTQPAPATSPTTQPAPATSPTTQPAPATS-- 312
Cdd:PHA03379   485 PGVVQDGRPACAPVPAPAGpivrpwEASLSQVPGVAFAPvmpqpmPVEPVPVPTVALERPVCPAPPLIAMQGPGETSGiv 564

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  313 --------PTTQPAPATSPT--------------TQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPT-- 368
Cdd:PHA03379   565 rvrerwrpAPWTPNPPRSPSqmsvrdrlarlraeAQPYQASVEVQPPQLTQVSPQQPMEYPLEPEQQMFPGSPFSQVAdv 644

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  369 ------PATSPTTQPAPATSPTTQPAP-----ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQpAPATSPTTQP 437
Cdd:PHA03379   645 mraggvPAMQPQYFDLPLQQPISQGAPlaplrASMGPVPPVPATQPQYFDIPLTEPINQGASAAHFLPQ-QPMEGPLVPE 723

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  438 -----APATSPTTQPTPGTS-----PTTQPAPATSPTTqPSPATNPTTQPSVSSSASTQPAPATSGTTQ 496
Cdd:PHA03379   724 rwmfqGATLSQSVRPGVAQSqyfdlPLTQPINHGAPAA-HFLHQPPMEGPWVPEQWMFQGAPPSQGTDV 791
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 248-476 6.32e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 53.94  E-value: 6.32e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  248 APASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTtqpaPATSPTTQPAPATSPTTQPAPATSPTTQP 327
Cdd:PRK08691   359 APLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQT----PVQTASAAAMPSEGKTAGPVSNQENNDVP 434

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  328 --APATSPTTQPAPatsptTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPAtspttQPAPATSPTT 405
Cdd:PRK08691   435 pwEDAPDEAQTAAG-----TAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPI-----QATPNDEAVE 504

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  406 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAP---ATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQ 476
Cdd:PRK08691   505 TETFAHEAPAEPFYGYGFPDNDCPPEDGAEIPPPdweHAAPADTAGGGADEEAEAGGIGGNNTPSAPPPEFSTE 578
PRK10856 PRK10856
cytoskeleton protein RodZ;
394-482 6.34e-07

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 53.11  E-value: 6.34e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  394 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNP 473
Cdd:PRK10856   165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGV 244


                   ....*....
gi 1831519558  474 TTQPSVSSS 482
Cdd:PRK10856   245 STPAADPNA 253
PRK10856 PRK10856
cytoskeleton protein RodZ;
324-408 6.51e-07

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 53.11  E-value: 6.51e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  324 TTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP 403
Cdd:PRK10856   165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGV 244


                   ....*
gi 1831519558  404 TTQPA 408
Cdd:PRK10856   245 STPAA 249
PRK10856 PRK10856
cytoskeleton protein RodZ;
350-433 6.62e-07

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 53.11  E-value: 6.62e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  350 ATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTtQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAP 429
Cdd:PRK10856   169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPS-QANVDTAATPAPAAPATPDGAAPLPTDQAGVSTP 247


                   ....
gi 1831519558  430 ATSP 433
Cdd:PRK10856   248 AADP 251
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 241-553 6.64e-07

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 54.15  E-value: 6.64e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  241 ASTSTQPAPASSPTTQPAP-ATSPTTQPAPATSPTTQPAPATspTTQPAPATSPTTQPAPATSPTTQPAP-ATSPT---T 315
Cdd:pfam05109  486 SPVTPSPSPRDNGTESKAPdMTSPTSAVTTPTPNATSPTPAV--TTPTPNATSPTLGKTSPTSAVTTPTPnATSPTpavT 563

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  316 QPAP-ATSPTTQPAPATSPTTQPAP-ATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSP 393
Cdd:pfam05109  564 TPTPnATIPTLGKTSPTSAVTTPTPnATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSS 643

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  394 TTQPAPATSPTTQPAPATSPT-----------------TQPAPATS-----PTTQPAPATSPTTQPAPATSPTTQPTPGT 451
Cdd:pfam05109  644 MSLRPSSISETLSPSTSDNSTshmplltsahptggeniTQVTPASTsthhvSTSSPAPRPGTTSQASGPGNSSTSTKPGE 723

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  452 SPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPAT 531
Cdd:pfam05109  724 VNVTKGTPPKNATSPQAPSGQKTAVPTVTSTGGKANSTTGGKHTTGHGARTSTEPTTDYGGDSTTPRTRYNATTYLPPST 803

                          330       340
                   ....*....|....*....|....*...
gi 1831519558  532 SA------TTQSVPVVTTQTTMGTSPTT 553
Cdd:pfam05109  804 SSklrprwTFTSPPVTTAQATVPVPPTS 831
PRK11633 PRK11633
cell division protein DedD; Provisional
 366-466 7.00e-07

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 51.93  E-value: 7.00e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  366 QPTPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT 445
Cdd:PRK11633    51 DEPDMMPAATQALPTQPPEGAAEAVRAGDA-AAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPP 129

                           90       100
                   ....*....|....*....|.
gi 1831519558  446 QPTPGTSPTTQPAPAtsPTTQ 466
Cdd:PRK11633   130 APKPEPKPVVEEKAA--PTGK 148
FimV COG3170
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];
258-509 7.21e-07

Type IV pilus assembly protein FimV [Cell motility, Extracellular structures];


Pssm-ID: 442403 [Multi-domain]  Cd Length: 508  Bit Score: 53.64  E-value: 7.21e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  258 APATSPTTQPAPATSPTTQP-APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP-APATSPTTQPAPATSPTT 335
Cdd:COG3170    105 DPPAYAAAAAAPAAAPAPAPaAPAAAAAAADQPAAEAAPAASGEYYPVRPGDTLWSIAARPvRPSSGVSLDQMMVALYRA 184

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  336 QPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT 415
Cdd:COG3170    185 NPDAFIDGNINRLKAGAVLRVPAAEEVAALSPAEARQEVQAQSADWAAYRARLAAAVEPAPAAAAPAAPPAAAAAAGPVP 264

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  416 QPAPAT-SPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPtTQPSVSSSASTQPAPATSGT 494
Cdd:COG3170    265 AAAEDTlSPEVTAAAAAEEADALPEAAAELAERLAALEAQLAELQRLLALKNPAPAAAV-SAPAAAAAAATVEAAAPAAA 343

                          250
                   ....*....|....*
gi 1831519558  495 TQPAPATSATTQPAP 509
Cdd:COG3170    344 AQPAAAAPAPALDNP 358
PRK10856 PRK10856
cytoskeleton protein RodZ;
274-363 7.30e-07

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 52.72  E-value: 7.30e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  274 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSP 353
Cdd:PRK10856   165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGV 244

                           90
                   ....*....|
gi 1831519558  354 TtqpTPATSP 363
Cdd:PRK10856   245 S---TPAADP 251
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 427-551 7.76e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 53.56  E-value: 7.76e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  427 PAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPttqPSVSSSASTQPAPATSGTTQPAPATSATTQ 506
Cdd:PRK14951   371 EAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAP---PAAAPPAPVAAPAAAAPAAAPAAAPAAVAL 447

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1831519558  507 PAPATSATTQPAPATSPTTQPAPATSATTQSVPVVTTQTTMGTSP 551
Cdd:PRK14951   448 APAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492
PRK10856 PRK10856
cytoskeleton protein RodZ;
340-423 9.27e-07

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 52.72  E-value: 9.27e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  340 ATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTtQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAP 419
Cdd:PRK10856   169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPS-QANVDTAATPAPAAPATPDGAAPLPTDQAGVSTP 247


                   ....
gi 1831519558  420 ATSP 423
Cdd:PRK10856   248 AADP 251
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
332-512 9.64e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 53.43  E-value: 9.64e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  332 SPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAT 411
Cdd:PRK14948   362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT---PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPS 438

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  412 S---------------PTT-----QPA-----PATSPTTQPAPA------------------------------TSPTTQ 436
Cdd:PRK14948   439 LnleelwqqilaklelPSTrmllsQQAelvslDSNRAVIAVSPNwlgmvqsrkplleqafakvlgrsiklnlesQSGSAS 518

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  437 PAPATSPTTQPTPGTSPTTQPAPatSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATS 512
Cdd:PRK14948   519 NTAKTPPPPQKSPPPPAPTPPLP--QPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDS 592
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
 238-545 9.76e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 53.58  E-value: 9.76e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  238 VVPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT--- 314
Cdd:PRK14949   379 GQTPSALAAAVQAPHANEPQFVNAAPAEKKTALTEQTTAQQQVQAANAEAVAEADASAEPADTVEQALDDESELLAAlna 458

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  315 ---------------TQPAPATSPTTQPAPATSPTTQPAPATSPTTQP---TPATSPTTQPTPATSPTTQPTPATSPTTQ 376
Cdd:PRK14949   459 eqavilsqaqsqgfeASSSLDADNSAVPEQIDSTAEQSVVNPSVTDTQvddTSASNNSAADNTVDDNYSAEDTLESNGLD 538

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  377 PAPA------------------------TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA-------------- 418
Cdd:PRK14949   539 EGDYaqdsapldayqddyvafssesynaLSDDEQHSANVQSAQSAAEAQPSSQSLSPISAVTTAAAsladddildavlaa 618

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  419 ------------PATSPTTQPAPATSPTTQPAPATsPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQ 486
Cdd:PRK14949   619 rdsllsdldalsPKEGDGKKSSADRKPKTPPSRAP-PASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSA 697

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  487 P----------------APATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVPVVTTQT 545
Cdd:PRK14949   698 PapppvpdpydrppweeAPEVASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQAEAQSPASTTALT 772
PRK10856 PRK10856
cytoskeleton protein RodZ;
284-373 9.86e-07

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 52.34  E-value: 9.86e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  284 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSP 363
Cdd:PRK10856   165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGV 244

                           90
                   ....*....|
gi 1831519558  364 TtqpTPATSP 373
Cdd:PRK10856   245 S---TPAADP 251
PRK10856 PRK10856
cytoskeleton protein RodZ;
360-443 1.00e-06

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 52.34  E-value: 1.00e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  360 ATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTtQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAP 439
Cdd:PRK10856   169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPS-QANVDTAATPAPAAPATPDGAAPLPTDQAGVSTP 247


                   ....
gi 1831519558  440 ATSP 443
Cdd:PRK10856   248 AADP 251
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
238-346 1.02e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 53.24  E-value: 1.02e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  238 VVPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPatsPTTQPAPATSPTTQPAPATSPTTQP 317
Cdd:PRK14971   387 AAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN---PPSTAPQAVRPAQFKEEKKIPVSKV 463

                           90       100       110
                   ....*....|....*....|....*....|.
gi 1831519558  318 APATSPTTQPA--PATSPTTQPAPATSPTTQ 346
Cdd:PRK14971   464 SSLGPSTLRPIqeKAEQATGNIKEAPTGTQK 494
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 260-486 1.03e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 53.17  E-value: 1.03e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  260 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAP 339
Cdd:PRK08691   357 AFAPLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPW 436

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  340 ATSPTTQPTPAtspTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPAtspttQPAPATSPTTQPAP 419
Cdd:PRK08691   437 EDAPDEAQTAA---GTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPI-----QATPNDEAVETETF 508

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  420 ATSPTTQPAPATSPTTQPAPATSPTTQPTP---GTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQ 486
Cdd:PRK08691   509 AHEAPAEPFYGYGFPDNDCPPEDGAEIPPPdweHAAPADTAGGGADEEAEAGGIGGNNTPSAPPPEFSTE 578
PRK10856 PRK10856
cytoskeleton protein RodZ;
430-513 1.05e-06

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 52.34  E-value: 1.05e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  430 ATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPtTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAP 509
Cdd:PRK10856   169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAP-SQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTP 247


                   ....
gi 1831519558  510 ATSA 513
Cdd:PRK10856   248 AADP 251
Not5 COG5665
CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription];
240-550 1.06e-06

CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription];


Pssm-ID: 444384 [Multi-domain]  Cd Length: 874  Bit Score: 53.51  E-value: 1.06e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqpaP 319
Cdd:COG5665    264 PTSPSGGTTPPSTNQLTTSNTPTSTAKAQPQPPTKKQPAKEPPSDTASGNPSAPSVLINSDSPTSEDPATASVPTT---E 340

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  320 ATSPTTQPAPATSPTTQPA-PATSPTTQPTPaTSPTTQPTPATSPT--TQPTPATSPTTQPAPATSPTTQPAPATSPTTQ 396
Cdd:COG5665    341 ETTAFTTPSSVPSTPAEKDtPATDLATPVSP-TPPETSVDKKVSPDsaTSSTKSEKEGGTASSPMPPNIAIGAKDDVDAT 419

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  397 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPatSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQ 476
Cdd:COG5665    420 DPSQEAKEYTKNAPMTPEADSAPESSVRTEASP--SAGSDLEPENTTLRDPAPNAIPPPEDPSTIGRLSSGDKLANETGP 497

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  477 PSVS-SSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSpttQPAPATSATTQSVPVVTTQTTMGTS 550
Cdd:COG5665    498 PVIRrDSTPSSTADQSIVGVLAFGLDQRTQAEISVEAASRSNPLLNS---QVKSFPLGKRSEGAKGKTQTDRGIS 569
dnaA PRK14086
chromosomal replication initiator protein DnaA;
253-443 1.06e-06

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 53.29  E-value: 1.06e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  253 PTTQPAPATSPTTQPAPA-TSPTTQPAPATSPTTQPAPATSPTTQPAPaTSPTTQPA-PATSPTTQPAPATspttqPAPA 330
Cdd:PRK14086    90 PSAGEPAPPPPHARRTSEpELPRPGRRPYEGYGGPRADDRPPGLPRQD-QLPTARPAyPAYQQRPEPGAWP-----RAAD 163

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  331 TSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPT-TQPAPATSPTTQPAPATSPTTQPAP 409
Cdd:PRK14086   164 DYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDwDRPRRDRTDRPEPPPGAGHVHRGGP 243

                          170       180       190
                   ....*....|....*....|....*....|....
gi 1831519558  410 atSPTTQPAPATSPTTQPAPaTSPTTQPAPATSP 443
Cdd:PRK14086   244 --GPPERDDAPVVPIRPSAP-GPLAAQPAPAPGP 274
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
344-542 1.17e-06

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 53.07  E-value: 1.17e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  344 TTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPA-----TSPTTQPAPATSPttQPAPATSPTTQPA 418
Cdd:PRK12727    57 TARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASaaedmIAAMALRQPVSVP--RQAPAAAPVRAAS 134

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  419 PATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPA 498
Cdd:PRK12727   135 IPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLD 214

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 1831519558  499 PATSATTQPAPATSattqpAPATSPTTQPAPATSATTQSVPVVT 542
Cdd:PRK12727   215 DDGFDLDDALPQIL-----PPAALPPIVVAPAAPAALAAVAAAA 253
Neisseria_TspB pfam05616
Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis ...
 259-389 1.19e-06

Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis TspB virulence factor proteins.


Pssm-ID: 283306 [Multi-domain]  Cd Length: 517  Bit Score: 52.79  E-value: 1.19e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  259 PATSPTTQPAPATSptTQPAPATSPTTQPAPATSPTTQPAPA-TSPTTQPAPatSPTTQPAPATSPTTQPAPATSPttqp 337
Cdd:pfam05616  277 PGYSEKVEVAPGTK--VNMGPVTDRNGNPVQVAATFGRDAQGnTTADVQVIP--RPDLTPASAEAPHAQPLPEVSP---- 348

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  338 apATSPTTQPTPATSPTTQPTPATSPTTQPTpaTSPTTQPAPATSPTTQPAP 389
Cdd:pfam05616  349 --AENPANNPDPDENPGTRPNPEPDPDLNPD--ANPDTDGQPGTRPDSPAVP 396
PRK11633 PRK11633
cell division protein DedD; Provisional
 316-420 1.21e-06

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 51.16  E-value: 1.21e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  316 QPAPATSPTTQPAPatsptTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTT 395
Cdd:PRK11633    51 DEPDMMPAATQALP-----TQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKV 125

                           90       100
                   ....*....|....*....|....*
gi 1831519558  396 QPAPATSPTTQPAPAtsptTQPAPA 420
Cdd:PRK11633   126 EAPPAPKPEPKPVVE----EKAAPT 146
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 244-385 1.29e-06

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 52.54  E-value: 1.29e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  244 STQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTtqPAPATSPTTQPAPATSPTTQPAPATSP 323
Cdd:COG3266    253 SALKAPSQASSASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPA--APAAAAAAAAPAEAAAPQPTAAKPVVT 330

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  324 TTQPAPAtspttqPAPATsPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTT 385
Cdd:COG3266    331 ETAAPAA------PAPEA-AAAAAAPAAPAVAKKLAADEQWLASQPASHYTLQLLGASSEAA 385
PRK10856 PRK10856
cytoskeleton protein RodZ;
374-458 1.32e-06

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 51.95  E-value: 1.32e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  374 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSP 453
Cdd:PRK10856   165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGV 244


                   ....*
gi 1831519558  454 TTQPA 458
Cdd:PRK10856   245 STPAA 249
PRK10856 PRK10856
cytoskeleton protein RodZ;
264-353 1.38e-06

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 51.95  E-value: 1.38e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  264 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP 343
Cdd:PRK10856   165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGV 244

                           90
                   ....*....|
gi 1831519558  344 TtqpTPATSP 353
Cdd:PRK10856   245 S---TPAADP 251
PRK11633 PRK11633
cell division protein DedD; Provisional
 239-340 1.40e-06

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 50.77  E-value: 1.40e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  239 VPASTSTQPAPASSPTTQPAPATSP-----TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP 313
Cdd:PRK11633    44 VPKPGDRDEPDMMPAATQALPTQPPegaaeAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQ 123

                           90       100
                   ....*....|....*....|....*..
gi 1831519558  314 TTQPAPATSPTTQPAPAtsptTQPAPA 340
Cdd:PRK11633   124 KVEAPPAPKPEPKPVVE----EKAAPT 146
Neisseria_TspB pfam05616
Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis ...
 369-495 1.59e-06

Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis TspB virulence factor proteins.


Pssm-ID: 283306 [Multi-domain]  Cd Length: 517  Bit Score: 52.40  E-value: 1.59e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  369 PATSPTTQPAPATSptTQPAPATSPTTQPAPATSPTTQPAPA-TSPTTQ--PAPATSPTTQPAPATSPTTQPAPATSPTT 445
Cdd:pfam05616  277 PGYSEKVEVAPGTK--VNMGPVTDRNGNPVQVAATFGRDAQGnTTADVQviPRPDLTPASAEAPHAQPLPEVSPAENPAN 354

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1831519558  446 QPTPGTSPTTQPAPatspttQPSPATNPTTQPSVSSSASTQP-APATSGTT 495
Cdd:pfam05616  355 NPDPDENPGTRPNP------EPDPDLNPDANPDTDGQPGTRPdSPAVPDRP 399
PRK11633 PRK11633
cell division protein DedD; Provisional
 306-406 1.73e-06

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 50.77  E-value: 1.73e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  306 QPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTT 385
Cdd:PRK11633    51 DEPDMMPAATQALPTQPPEGAAEAVRAGDA-AAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPP 129

                           90       100
                   ....*....|....*....|.
gi 1831519558  386 QPAPATSPTTQPAPAtsPTTQ 406
Cdd:PRK11633   130 APKPEPKPVVEEKAA--PTGK 148
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 406-546 1.73e-06

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 52.42  E-value: 1.73e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  406 QPAPATSPTTQPAP---ATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSptTQPAPATSPTTQPSPATNPTTQPsvSSS 482
Cdd:PHA03269    16 NLIIANLNTNIPIPelhTSAATQKPDPAPAPHQAASRAPDPAVAPTSAAS--RKPDLAQAPTPAASEKFDPAPAP--HQA 91

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  483 ASTQPAPATSGTTQPAPATSATTqpAPATSATTQPAPATSPTtqpapaTSATTQSVPVVTTQTT 546
Cdd:PHA03269    92 ASRAPDPAVAPQLAAAPKPDAAE--AFTSAAQAHEAPADAGT------SAASKKPDPAAHTQHS 147
motB PRK12799
flagellar motor protein MotB; Reviewed
 261-386 1.82e-06

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 52.03  E-value: 1.82e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  261 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT-QPAPATSPTTQPAPATSP-TTQPA 338
Cdd:PRK12799   298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGvLPSDVTLPGTVALPAAEPvNMQPQ 377

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1831519558  339 PATSPTTQptpaTSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQ 386
Cdd:PRK12799   378 PMSTTETQ----QSSTGNITSTANGPTTSLPAAPASNIPVSPTSRDAQ 421
motB PRK12799
flagellar motor protein MotB; Reviewed
 271-396 1.93e-06

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 52.03  E-value: 1.93e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  271 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT-QPAPATSPTTQPAPATSP-TTQPT 348
Cdd:PRK12799   298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGvLPSDVTLPGTVALPAAEPvNMQPQ 377

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1831519558  349 PATSPTTQptpaTSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQ 396
Cdd:PRK12799   378 PMSTTETQ----QSSTGNITSTANGPTTSLPAAPASNIPVSPTSRDAQ 421
PRK11633 PRK11633
cell division protein DedD; Provisional
 296-398 1.95e-06

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 50.39  E-value: 1.95e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  296 QPAPATSPTTQPAPatsptTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPatSPTTQPTPATSPTT 375
Cdd:PRK11633    51 DEPDMMPAATQALP-----TQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKP--KPVEKPKPKPKPQQ 123

                           90       100
                   ....*....|....*....|...
gi 1831519558  376 QPAPATSPTTQPAPATSPTTQPA 398
Cdd:PRK11633   124 KVEAPPAPKPEPKPVVEEKAAPT 146
PRK10856 PRK10856
cytoskeleton protein RodZ;
370-453 2.49e-06

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 51.18  E-value: 2.49e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  370 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTtQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTP 449
Cdd:PRK10856   169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPS-QANVDTAATPAPAAPATPDGAAPLPTDQAGVSTP 247


                   ....
gi 1831519558  450 GTSP 453
Cdd:PRK10856   248 AADP 251
PRK10856 PRK10856
cytoskeleton protein RodZ;
364-445 2.52e-06

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 51.18  E-value: 2.52e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  364 TTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP 443
Cdd:PRK10856   165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGV 244


                   ..
gi 1831519558  444 TT 445
Cdd:PRK10856   245 ST 246
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 408-535 2.68e-06

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 51.77  E-value: 2.68e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  408 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQP--APATSPTTQPSPATNPTTQPSVSSSAST 485
Cdd:COG3266    257 APSQASSASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAaaAAAAAPAEAAAPQPTAAKPVVTETAAPA 336

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1831519558  486 QPAPATSgTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATT 535
Cdd:COG3266    337 APAPEAA-AAAAAPAAPAVAKKLAADEQWLASQPASHYTLQLLGASSEAA 385
dnaA PRK14086
chromosomal replication initiator protein DnaA;
258-473 3.04e-06

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 51.75  E-value: 3.04e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  258 APATSPTTQPAPATSPTTQPAPA-TSPTTQPAPATSPTTQPAPATSPTTQPAPaTSPTTQPA-PATSPTTQPAPATsptt 335
Cdd:PRK14086    85 AITVDPSAGEPAPPPPHARRTSEpELPRPGRRPYEGYGGPRADDRPPGLPRQD-QLPTARPAyPAYQQRPEPGAWP---- 159

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  336 qPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPaPATSPTTQPAPATSPTT 415
Cdd:PRK14086   160 -RAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDR-PRRDRTDRPEPPPGAGH 237

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  416 QPAPATSPTTQPAPATSPTTQPAPatspttqptpgTSPTTQPAPATSPtTQPSPATNP 473
Cdd:PRK14086   238 VHRGGPGPPERDDAPVVPIRPSAP-----------GPLAAQPAPAPGP-GEPTARLNP 283
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
352-530 3.18e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 51.50  E-value: 3.18e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  352 SPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAT 431
Cdd:PRK14948   362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT---PSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPS 438

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  432 S---------------PTTQ-------------PAPAT---SPT----------------------------TQPTPGTS 452
Cdd:PRK14948   439 LnleelwqqilaklelPSTRmllsqqaelvsldSNRAViavSPNwlgmvqsrkplleqafakvlgrsiklnlESQSGSAS 518

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  453 PTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPatsgttqPAPATSATTQPAPATSATTQPAPATSPTTQPAPA 530
Cdd:PRK14948   519 NTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPP-------PPTATQASSNAPAQIPADSSPPPPIPEEPTPSPT 589
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 248-518 3.60e-06

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 51.11  E-value: 3.60e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  248 APASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAT-SPTTQPAPATSPTTQ 326
Cdd:pfam17823  156 AAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAATATgHPAAGTALAAVGNSS 235

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  327 PAPATsPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ 406
Cdd:pfam17823  236 PAAGT-VTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPHARRLSPAKHMPSDTMARNPAAPMGAQAQGPIIQVSTDQ 314

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  407 PAPATSPTTQPAPATSPTTQPAPATSP-------TTQPAPATSPTTQPTPGTSPTTQP-APATSPTTQPSPA--TNPTTQ 476
Cdd:pfam17823  315 PVHNTAGEPTPSPSNTTLEPNTPKSVAstnlavvTTTKAQAKEPSASPVPVLHTSMIPeVEATSPTTQPSPLlpTQGAAG 394

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|..
gi 1831519558  477 PSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPA 518
Cdd:pfam17823  395 PGILLAPEQVATEATAGTASAGPTPRSSGDPKTLAMASCQLS 436
PRK10856 PRK10856
cytoskeleton protein RodZ;
261-344 3.61e-06

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 50.80  E-value: 3.61e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  261 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPA 340
Cdd:PRK10856   166 TSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVS 245


                   ....
gi 1831519558  341 TSPT 344
Cdd:PRK10856   246 TPAA 249
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
327-487 3.68e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 51.50  E-value: 3.68e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  327 PAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSP---TTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS- 402
Cdd:PRK14948   361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTkqaATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLn 440

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  403 --------------PTTQ------------------------------------------------------PAPATSPT 414
Cdd:PRK14948   441 leelwqqilaklelPSTRmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnlesQSGSASNT 520

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  415 TQPAPATSPTTQPAPATSPTTQP---APATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQP 487
Cdd:PRK14948   521 AKTPPPPQKSPPPPAPTPPLPQPtatAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSPEE 596
motB PRK12799
flagellar motor protein MotB; Reviewed
 281-406 3.83e-06

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 50.87  E-value: 3.83e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  281 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT-QPAPATSPTTQPTPATSP-TTQPT 358
Cdd:PRK12799   298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGvLPSDVTLPGTVALPAAEPvNMQPQ 377

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1831519558  359 PATSPTTQptpaTSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ 406
Cdd:PRK12799   378 PMSTTETQ----QSSTGNITSTANGPTTSLPAAPASNIPVSPTSRDAQ 421
PRK10856 PRK10856
cytoskeleton protein RodZ;
241-323 4.09e-06

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 50.41  E-value: 4.09e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  241 ASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPtTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPA 320
Cdd:PRK10856   170 TDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAP-SQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPA 248


                   ...
gi 1831519558  321 TSP 323
Cdd:PRK10856   249 ADP 251
motB PRK12799
flagellar motor protein MotB; Reviewed
 361-478 4.10e-06

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 50.87  E-value: 4.10e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  361 TSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT-QPAPATSPTTQPAPATSP-TTQPA 438
Cdd:PRK12799   298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGvLPSDVTLPGTVALPAAEPvNMQPQ 377

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1831519558  439 PATSPTTQPTP-GTSPTTQPAPATSptTQPSPATNPTTQPS 478
Cdd:PRK12799   378 PMSTTETQQSStGNITSTANGPTTS--LPAAPASNIPVSPT 416
PRK11633 PRK11633
cell division protein DedD; Provisional
 386-490 4.39e-06

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 49.23  E-value: 4.39e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  386 QPAPATSPTTQPAPatsptTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTT 465
Cdd:PRK11633    51 DEPDMMPAATQALP-----TQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKV 125

                           90       100
                   ....*....|....*....|....*
gi 1831519558  466 QPSPATNPTTQPsvssSASTQPAPA 490
Cdd:PRK11633   126 EAPPAPKPEPKP----VVEEKAAPT 146
PRK10856 PRK10856
cytoskeleton protein RodZ;
361-444 4.51e-06

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 50.41  E-value: 4.51e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  361 TSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPA 440
Cdd:PRK10856   166 TSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVS 245


                   ....
gi 1831519558  441 TSPT 444
Cdd:PRK10856   246 TPAA 249
PRK10856 PRK10856
cytoskeleton protein RodZ;
384-468 4.51e-06

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 50.41  E-value: 4.51e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  384 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSP 463
Cdd:PRK10856   165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGV 244


                   ....*
gi 1831519558  464 TTQPS 468
Cdd:PRK10856   245 STPAA 249
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 388-525 4.54e-06

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 51.00  E-value: 4.54e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  388 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTtqPAPATSPTTQPTPGTSPTTQPAPATSPTTQP 467
Cdd:COG3266    257 APSQASSASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPA--APAAAAAAAAPAEAAAPQPTAAKPVVTETAA 334

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  468 SPATNPTTqpsvsssASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTT 525
Cdd:COG3266    335 PAAPAPEA-------AAAAAAPAAPAVAKKLAADEQWLASQPASHYTLQLLGASSEAA 385
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
238-337 4.57e-06

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 51.39  E-value: 4.57e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  238 VVPASTSTQPAPASSPTTQPAPATS-PTTQPAPATSPTTQPAPATspTTQPAPATSPTTQPAPATSPTTQPAPATSPTTq 316
Cdd:PRK11907    15 LALLTASNPKLAQAEEIVTTTPATStEAEQTTPVESDATEEADNT--ETPVAATTAAEAPSSSETAETSDPTSEATDTT- 91

                           90       100
                   ....*....|....*....|.
gi 1831519558  317 papaTSPTTQPAPATSPTTQP 337
Cdd:PRK11907    92 ----TSEARTVTPAATETSKP 108
motB PRK12799
flagellar motor protein MotB; Reviewed
 311-436 4.75e-06

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 50.87  E-value: 4.75e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  311 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTT-QPTPATSPTTQPAPATSP-TTQPA 388
Cdd:PRK12799   298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGvLPSDVTLPGTVALPAAEPvNMQPQ 377

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1831519558  389 PATSPTTQpapaTSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ 436
Cdd:PRK12799   378 PMSTTETQ----QSSTGNITSTANGPTTSLPAAPASNIPVSPTSRDAQ 421
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 340-555 5.00e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 51.07  E-value: 5.00e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  340 ATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPA-TSPTTQPAPATSPTTQPAPATSPTTQPA 418
Cdd:pfam05109  412 ATTTTHKVIFSKAPESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPAsTGPTVSTADVTSPTPAGTTSGASPVTPS 491

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  419 PATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAP-ATSP----TTQPSPATNPTTQPSVSSSASTQPAP-ATS 492
Cdd:pfam05109  492 PSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPnATSPtlgkTSPTSAVTTPTPNATSPTPAVTTPTPnATI 571

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831519558  493 GTTQPAPATSATTQPAPatSATTQPAPATSPTTQPAPATSATTQSVPVVTTQTTMGTSPTTAG 555
Cdd:pfam05109  572 PTLGKTSPTSAVTTPTP--NATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTTG 632
PRK10905 PRK10905
cell division protein DamX; Validated
 247-472 5.06e-06

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 50.32  E-value: 5.06e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  247 PAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ-----PAPAT 321
Cdd:PRK10905    23 PSTSSSDQTASGEKSIDLAGNATDQANGVQPAPGTTSAEQTAGNTQQDVSLPPISSTPTQGQTPVATDGQqrvevQGDLN 102

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  322 SPTTQPAPATSPTTQPAPATSPTTQPT--PATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAP 399
Cdd:PRK10905   103 NALTQPQNQQQLNNVAVNSTLPTEPATvaPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQT 182

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  400 A--TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATN 472
Cdd:PRK10905   183 PkrTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAGNVGSLKSAPSSHYTLQLSSSSN 257
Neisseria_TspB pfam05616
Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis ...
 319-439 5.24e-06

Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis TspB virulence factor proteins.


Pssm-ID: 283306 [Multi-domain]  Cd Length: 517  Bit Score: 50.86  E-value: 5.24e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  319 PATSPTTQPAPATSptTQPAPATSPTTQPTPATSP---TTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTT 395
Cdd:pfam05616  277 PGYSEKVEVAPGTK--VNMGPVTDRNGNPVQVAATfgrDAQGNTTADVQVIPRPDLTPASAEAPHAQPLPEVSPAENPAN 354

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1831519558  396 QPAPATSPTTQPAPATSPTTQpaPATSPTTQPAPATSPTTQPAP 439
Cdd:pfam05616  355 NPDPDENPGTRPNPEPDPDLN--PDANPDTDGQPGTRPDSPAVP 396
motB PRK12799
flagellar motor protein MotB; Reviewed
 321-446 5.32e-06

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 50.48  E-value: 5.32e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  321 TSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTT-QPAPATSPTTQPAPATSP-TTQPA 398
Cdd:PRK12799   298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGvLPSDVTLPGTVALPAAEPvNMQPQ 377

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1831519558  399 PATSPTTQpapaTSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ 446
Cdd:PRK12799   378 PMSTTETQ----QSSTGNITSTANGPTTSLPAAPASNIPVSPTSRDAQ 421
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 262-550 5.35e-06

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 50.92  E-value: 5.35e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  262 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPaPATSPTTQPAPATSPTTQPAPAT 341
Cdd:NF033839   250 NVNTKVEIENTVHKIFADMDAVVTKFKKGLTQDTPKEPGNKKPSAPKPGMQPSPQP-EKKEVKPEPETPKPEVKPQLEKP 328

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  342 SPTTQPTPAT-SPTTQPTPAT-SPTTQPTPAT-SPTTQPAPAT-SPTTQPAPAT-SPTTQPAPAT-SPTTQPAPAT-SPT 414
Cdd:NF033839   329 KPEVKPQPEKpKPEVKPQLETpKPEVKPQPEKpKPEVKPQPEKpKPEVKPQPETpKPEVKPQPEKpKPEVKPQPEKpKPE 408

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  415 TQPAPAT-SPTTQPAPAT-SPTTQPAPAT-SPTTQPTP-GTSPTTQPAPAT-SPTTQPSPAT-NPTTQPSVSSSASTQPA 488
Cdd:NF033839   409 VKPQPEKpKPEVKPQPEKpKPEVKPQPEKpKPEVKPQPeKPKPEVKPQPETpKPEVKPQPEKpKPEVKPQPEKPKPDNSK 488

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  489 PATSGtTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVPVVTTQTTMGTS 550
Cdd:NF033839   489 PQADD-KKPSTPNNLSKDKQPSNQASTNEKATNKPKKSLPSTGSISNLALEIAGLLTLAGAT 549
PRK10856 PRK10856
cytoskeleton protein RodZ;
460-541 5.42e-06

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 50.02  E-value: 5.42e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  460 ATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQpAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVP 539
Cdd:PRK10856   169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQ-QNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTP 247


                   ..
gi 1831519558  540 VV 541
Cdd:PRK10856   248 AA 249
PHA03377 PHA03377
EBNA-3C; Provisional
 259-551 5.45e-06

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 51.21  E-value: 5.45e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  259 PATSPTTQPAPatSPTTQPAPATSPTTQPAPATSPTTQPAPAtspttQPAPATSPttqPAPATSPTTQPAPATSPTTQPA 338
Cdd:PHA03377   412 PWRKPRTLPWP--TPKTHPVKRTLVKTSGRSDEAEQAQSTPE-----RPGPSDQP---SVPVEPAHLTPVEHTTVILHQP 481

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  339 PATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTT-------QPAPATSPTTQPAPAT 411
Cdd:PHA03377   482 PQSPPTVAIKPAPPPSRRRRGACVVYDDDIIEVIDVETTEEEESVTQPAKPHRKVQDgfqrsgrRQKRATPPKVSPSDRG 561

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  412 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT-----QPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQ 486
Cdd:PHA03377   562 PPKASPPVMAPPSTGPRVMATPSTGPRDMAPPSTgprqqAKCKDGPPASGPHEKQPPSSAPRDMAPSVVRMFLRERLLEQ 641

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  487 PapatsgtTQPAPATSATTQPAPATSATTQ-PAPATSPTTQPAPATSATTQSVPVVTTQTTMGTSP 551
Cdd:PHA03377   642 S-------TGPKPKSFWEMRAGRDGSGIQQePSSRRQPATQSTPPRPSWLPSVFVLPSVDAGRAQP 700
PRK10856 PRK10856
cytoskeleton protein RodZ;
351-434 5.82e-06

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 50.02  E-value: 5.82e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  351 TSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPA 430
Cdd:PRK10856   166 TSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVS 245


                   ....
gi 1831519558  431 TSPT 434
Cdd:PRK10856   246 TPAA 249
motB PRK12799
flagellar motor protein MotB; Reviewed
 291-416 6.05e-06

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 50.48  E-value: 6.05e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  291 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT-QPTPATSPTTQPTPATSP-TTQPT 368
Cdd:PRK12799   298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGvLPSDVTLPGTVALPAAEPvNMQPQ 377

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1831519558  369 PATSPTTQpapaTSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ 416
Cdd:PRK12799   378 PMSTTETQ----QSSTGNITSTANGPTTSLPAAPASNIPVSPTSRDAQ 421
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 241-453 6.19e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 50.86  E-value: 6.19e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  241 ASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP--APATSPTTQPA 318
Cdd:PRK08691   368 ANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPpwEDAPDEAQTAA 447

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  319 PatsptTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPAtspttQPAPATSPTTQPAPATSPTTQPA 398
Cdd:PRK08691   448 G-----TAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPI-----QATPNDEAVETETFAHEAPAEPF 517

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  399 PATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSP 453
Cdd:PRK08691   518 YGYGFPDNDCPPEDGAEIPPPDWEHAAPADTAGGGADEEAEAGGIGGNNTPSAPP 572
Neisseria_TspB pfam05616
Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis ...
 257-329 6.28e-06

Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis TspB virulence factor proteins.


Pssm-ID: 283306 [Multi-domain]  Cd Length: 517  Bit Score: 50.48  E-value: 6.28e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831519558  257 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQpaPATSPTTQPAPATSPTTQPAP 329
Cdd:pfam05616  326 PRPDLTPASAEAPHAQPLPEVSPAENPANNPDPDENPGTRPNPEPDPDLN--PDANPDTDGQPGTRPDSPAVP 396
PRK10856 PRK10856
cytoskeleton protein RodZ;
445-534 6.41e-06

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 50.02  E-value: 6.41e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  445 TQPTP-GTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSP 523
Cdd:PRK10856   159 GQSVPlDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLP 238

                           90
                   ....*....|.
gi 1831519558  524 TTQPAPATSAT 534
Cdd:PRK10856   239 TDQAGVSTPAA 249
PRK10856 PRK10856
cytoskeleton protein RodZ;
381-464 6.52e-06

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 50.02  E-value: 6.52e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  381 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPA 460
Cdd:PRK10856   166 TSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVS 245


                   ....
gi 1831519558  461 TSPT 464
Cdd:PRK10856   246 TPAA 249
PRK11633 PRK11633
cell division protein DedD; Provisional
 238-328 6.59e-06

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 48.85  E-value: 6.59e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  238 VVPASTS---TQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPatSPTTQPAPATSPTTQPAPATSPT 314
Cdd:PRK11633    55 MMPAATQalpTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKP--KPVEKPKPKPKPQQKVEAPPAPK 132

                           90
                   ....*....|....
gi 1831519558  315 TQPAPATSPTTQPA 328
Cdd:PRK11633   133 PEPKPVVEEKAAPT 146
PRK10856 PRK10856
cytoskeleton protein RodZ;
410-493 6.82e-06

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 49.64  E-value: 6.82e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  410 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPtTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAP 489
Cdd:PRK10856   169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAP-SQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTP 247


                   ....
gi 1831519558  490 ATSG 493
Cdd:PRK10856   248 AADP 251
PRK10856 PRK10856
cytoskeleton protein RodZ;
444-528 6.94e-06

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 49.64  E-value: 6.94e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  444 TTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSP 523
Cdd:PRK10856   165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGV 244


                   ....*
gi 1831519558  524 TTQPA 528
Cdd:PRK10856   245 STPAA 249
motB PRK12799
flagellar motor protein MotB; Reviewed
 301-426 7.32e-06

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 50.10  E-value: 7.32e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  301 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTT-QPTPATSPTTQPTPATSP-TTQPA 378
Cdd:PRK12799   298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGvLPSDVTLPGTVALPAAEPvNMQPQ 377

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1831519558  379 PATSPTTQpapaTSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ 426
Cdd:PRK12799   378 PMSTTETQ----QSSTGNITSTANGPTTSLPAAPASNIPVSPTSRDAQ 421
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 240-435 7.55e-06

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 50.23  E-value: 7.55e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAP 319
Cdd:COG3266    195 LRAGSAAADALALLLLLLASALGEAVAAAAELAALALLAAGAAEVLTARLVLLLLIIGSALKAPSQASSASAPATTSLGE 274

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  320 ATSPTTQPAPATSPTTQPAPATSPTTQPTpatsPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATsPTTQPAP 399
Cdd:COG3266    275 QQEVSLPPAVAAQPAAAAAAQPSAVALPA----APAAAAAAAAPAEAAAPQPTAAKPVVTETAAPAAPAPEA-AAAAAAP 349

                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 1831519558  400 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT 435
Cdd:COG3266    350 AAPAVAKKLAADEQWLASQPASHYTLQLLGASSEAA 385
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
350-450 7.61e-06

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 50.62  E-value: 7.61e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  350 ATSPTTQPTPATSPTTQPTPATS-PTTQPAPATSPTTQPAPATspTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqpa 428
Cdd:PRK11907    17 LLTASNPKLAQAEEIVTTTPATStEAEQTTPVESDATEEADNT--ETPVAATTAAEAPSSSETAETSDPTSEATDTT--- 91

                           90       100
                   ....*....|....*....|..
gi 1831519558  429 paTSPTTQPAPATSPTTQPTPG 450
Cdd:PRK11907    92 --TSEARTVTPAATETSKPVEG 111
PRK11633 PRK11633
cell division protein DedD; Provisional
 376-477 7.71e-06

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 48.85  E-value: 7.71e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  376 QPAPATSPTTQPAPatsptTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPatSPTTQPTPGTSPTT 455
Cdd:PRK11633    51 DEPDMMPAATQALP-----TQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKP--KPVEKPKPKPKPQQ 123

                           90       100
                   ....*....|....*....|..
gi 1831519558  456 QPAPATSPTTQPSPATNPTTQP 477
Cdd:PRK11633   124 KVEAPPAPKPEPKPVVEEKAAP 145
PRK10856 PRK10856
cytoskeleton protein RodZ;
260-343 7.71e-06

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 49.64  E-value: 7.71e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  260 ATSPTTQPAPATSPTTQPAPATSPTTQPAPA-TSPTTQPAPAtsPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA 338
Cdd:PRK10856   169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPApAVDPQQNAVV--APSQANVDTAATPAPAAPATPDGAAPLPTDQAGVST 246


                   ....*
gi 1831519558  339 PATSP 343
Cdd:PRK10856   247 PAADP 251
motB PRK12799
flagellar motor protein MotB; Reviewed
 351-468 7.99e-06

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 50.10  E-value: 7.99e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  351 TSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT-QPAPATSPTTQPAPATSPTTQPAP 429
Cdd:PRK12799   298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGvLPSDVTLPGTVALPAAEPVNMQPQ 377

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1831519558  430 ATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPS 468
Cdd:PRK12799   378 PMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPT 416
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 305-434 8.56e-06

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 49.77  E-value: 8.56e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  305 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPtPATSPTTQPAPATSPT 384
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQP-EDEPVGPGAAPAAEPD 271

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  385 TQPAPAT-SPTTQPAPATSPTTQPAPATSPTTQPA-PATSPTTQPAPATSPT 434
Cdd:NF040712   272 EATRDAGePPAPGAAETPEAAEPPAPAPAAPAAPAaPEAEEPARPEPPPAPK 323
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 288-509 8.62e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 50.48  E-value: 8.62e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  288 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQP 367
Cdd:PRK08691   359 APLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWED 438

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  368 TPatSPTTQPAPatsptTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAtspttQPAPATSPTTQP 447
Cdd:PRK08691   439 AP--DEAQTAAG-----TAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPI-----QATPNDEAVETE 506

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  448 TPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAP 509
Cdd:PRK08691   507 TFAHEAPAEPFYGYGFPDNDCPPEDGAEIPPPDWEHAAPADTAGGGADEEAEAGGIGGNNTP 568
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
239-390 8.64e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 50.35  E-value: 8.64e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  239 VPASTSTQPAPASSPTTQPAPATSPTTQ-PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS--------------- 302
Cdd:PRK14948   375 ANPTPAPNPSPPPAPIQPSAPKTKQAATtPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLnleelwqqilaklel 454

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  303 PTTQ-------------PAPAT-------------------------------------SPTTQPAPATSPTTQPAPATS 332
Cdd:PRK14948   455 PSTRmllsqqaelvsldSNRAViavspnwlgmvqsrkplleqafakvlgrsiklnlesqSGSASNTAKTPPPPQKSPPPP 534

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  333 PTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPttqPAPATSPTTQPAPA 390
Cdd:PRK14948   535 APTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS---PPPPIPEEPTPSPT 589
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 429-554 8.77e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 50.10  E-value: 8.77e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  429 PATSPTTQPAPATSPTTQPTpgtspttQPAPATSPttQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPA 508
Cdd:PRK14951   366 PAAAAEAAAPAEKKTPARPE-------AAAPAAAP--VAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAA 436

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1831519558  509 PATSATTQPAPATSPTTQPAPATSATTQSVPVVTTQTTMGTSPTTA 554
Cdd:PRK14951   437 APAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAA 482
PRK10856 PRK10856
cytoskeleton protein RodZ;
424-508 9.12e-06

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 49.25  E-value: 9.12e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  424 TTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSA 503
Cdd:PRK10856   165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGV 244


                   ....*
gi 1831519558  504 TTQPA 508
Cdd:PRK10856   245 STPAA 249
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
270-367 9.18e-06

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 50.24  E-value: 9.18e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  270 ATSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTTQPAPATspTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqpt 348
Cdd:PRK11907    17 LLTASNPKLAQAEEIVTTTPATStEAEQTTPVESDATEEADNT--ETPVAATTAAEAPSSSETAETSDPTSEATDTT--- 91

                           90
                   ....*....|....*....
gi 1831519558  349 paTSPTTQPTPATSPTTQP 367
Cdd:PRK11907    92 --TSEARTVTPAATETSKP 108
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
260-357 9.18e-06

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 50.24  E-value: 9.18e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  260 ATSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTTQPAPATspTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqpa 338
Cdd:PRK11907    17 LLTASNPKLAQAEEIVTTTPATStEAEQTTPVESDATEEADNT--ETPVAATTAAEAPSSSETAETSDPTSEATDTT--- 91

                           90
                   ....*....|....*....
gi 1831519558  339 paTSPTTQPTPATSPTTQP 357
Cdd:PRK11907    92 --TSEARTVTPAATETSKP 108
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
330-427 9.49e-06

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 50.24  E-value: 9.49e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  330 ATSPTTQPAPATSPTTQPTPATS-PTTQPTPATSPTTQPTPATspTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqpa 408
Cdd:PRK11907    17 LLTASNPKLAQAEEIVTTTPATStEAEQTTPVESDATEEADNT--ETPVAATTAAEAPSSSETAETSDPTSEATDTT--- 91

                           90
                   ....*....|....*....
gi 1831519558  409 paTSPTTQPAPATSPTTQP 427
Cdd:PRK11907    92 --TSEARTVTPAATETSKP 108
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 295-424 9.51e-06

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 49.38  E-value: 9.51e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  295 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPtPATSPTTQPTPATSPT 374
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQP-EDEPVGPGAAPAAEPD 271

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  375 TQPAPAT-SPTTQPAPATSPTTQPAPATSPTTQPA-PATSPTTQPAPATSPT 424
Cdd:NF040712   272 EATRDAGePPAPGAAETPEAAEPPAPAPAAPAAPAaPEAEEPARPEPPPAPK 323
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 285-414 1.00e-05

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 49.38  E-value: 1.00e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  285 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPtPATSPTTQPTPATSPT 364
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQP-EDEPVGPGAAPAAEPD 271

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  365 TQPTPAT-SPTTQPAPATSPTTQPAPATSPTTQPA-PATSPTTQPAPATSPT 414
Cdd:NF040712   272 EATRDAGePPAPGAAETPEAAEPPAPAPAAPAAPAaPEAEEPARPEPPPAPK 323
motB PRK12799
flagellar motor protein MotB; Reviewed
 331-448 1.02e-05

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 49.71  E-value: 1.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  331 TSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTT-QPAPATSPTTQPAPATSP-TTQPA 408
Cdd:PRK12799   298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGvLPSDVTLPGTVALPAAEPvNMQPQ 377

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1831519558  409 PATSPTTQPAPATSPTTQpapATSPTTQ--PAPATSPTTQPT 448
Cdd:PRK12799   378 PMSTTETQQSSTGNITST---ANGPTTSlpAAPASNIPVSPT 416
Not5 COG5665
CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription];
241-529 1.07e-05

CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription];


Pssm-ID: 444384 [Multi-domain]  Cd Length: 874  Bit Score: 50.05  E-value: 1.07e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  241 ASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPA 320
Cdd:COG5665    165 ASNPVAVVVTTMIAVPSAPAAPPNAVDYSVLVPIAAQDPAASVSTPQAFNASATSGRSQHIVQAAKRVGVEWWGDPSLLA 244

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  321 TSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPA 400
Cdd:COG5665    245 TPPATPATEEKSSQQPKSQPTSPSGGTTPPSTNQLTTSNTPTSTAKAQPQPPTKKQPAKEPPSDTASGNPSAPSVLINSD 324

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  401 TSPTTQPAPATSPTTqpaPATSPTTQPAPATSPTTQPA-PATSPTT--QPTPGTSPTTQPAPATSPTTQPSPATNPTTQP 477
Cdd:COG5665    325 SPTSEDPATASVPTT---EETTAFTTPSSVPSTPAEKDtPATDLATpvSPTPPETSVDKKVSPDSATSSTKSEKEGGTAS 401

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  478 SVSSSASTQPAPATSGTTQPAPATSATTQPAPATsATTQPAPATSPTTQPAP 529
Cdd:COG5665    402 SPMPPNIAIGAKDDVDATDPSQEAKEYTKNAPMT-PEADSAPESSVRTEASP 452
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
340-437 1.08e-05

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 50.24  E-value: 1.08e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  340 ATSPTTQPTPATSPTTQPTPATS-PTTQPTPATSPTTQPAPATspTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqpa 418
Cdd:PRK11907    17 LLTASNPKLAQAEEIVTTTPATStEAEQTTPVESDATEEADNT--ETPVAATTAAEAPSSSETAETSDPTSEATDTT--- 91

                           90
                   ....*....|....*....
gi 1831519558  419 paTSPTTQPAPATSPTTQP 437
Cdd:PRK11907    92 --TSEARTVTPAATETSKP 108
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 240-475 1.08e-05

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 49.46  E-value: 1.08e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAP 319
Cdd:COG3266    164 LLALQDIQGTLQALGAVAALLGLRKAEEALALRAGSAAADALALLLLLLASALGEAVAAAAELAALALLAAGAAEVLTAR 243

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  320 ATSPTTQPAPATSPTTQPAPATSPTTQPTPAT-SPTTQPTPATSPTTQPTPATSPTTQPApatspttqPAPATSPTTQPA 398
Cdd:COG3266    244 LVLLLLIIGSALKAPSQASSASAPATTSLGEQqEVSLPPAVAAQPAAAAAAQPSAVALPA--------APAAAAAAAAPA 315

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  399 PATSPTTQPAPATSPTTQPAPAtspttqPAPATsPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTT 475
Cdd:COG3266    316 EAAAPQPTAAKPVVTETAAPAA------PAPEA-AAAAAAPAAPAVAKKLAADEQWLASQPASHYTLQLLGASSEAA 385
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 431-554 1.14e-05

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 49.73  E-value: 1.14e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  431 TSPTTQPAPATSPTTQPTPGTS-PTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAP 509
Cdd:PHA03269    17 LIIANLNTNIPIPELHTSAATQkPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAP 96

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1831519558  510 ATSATTQPAPATSPTTQPAPATSATTQSVPVVTTQTTMGTSPTTA 554
Cdd:PHA03269    97 DPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPA 141
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
280-377 1.15e-05

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 49.85  E-value: 1.15e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  280 ATSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTTQPAPATspTTQPAPATSPTTQPAPATSPTTQPTPATSPTTqpt 358
Cdd:PRK11907    17 LLTASNPKLAQAEEIVTTTPATStEAEQTTPVESDATEEADNT--ETPVAATTAAEAPSSSETAETSDPTSEATDTT--- 91

                           90
                   ....*....|....*....
gi 1831519558  359 paTSPTTQPTPATSPTTQP 377
Cdd:PRK11907    92 --TSEARTVTPAATETSKP 108
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
290-387 1.21e-05

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 49.85  E-value: 1.21e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  290 ATSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTTQPAPATspTTQPAPATSPTTQPTPATSPTTQPTPATSPTTqpt 368
Cdd:PRK11907    17 LLTASNPKLAQAEEIVTTTPATStEAEQTTPVESDATEEADNT--ETPVAATTAAEAPSSSETAETSDPTSEATDTT--- 91

                           90
                   ....*....|....*....
gi 1831519558  369 paTSPTTQPAPATSPTTQP 387
Cdd:PRK11907    92 --TSEARTVTPAATETSKP 108
TALPID3 pfam15324
Hedgehog signalling target; TALPID3 is a family of eukaryotic proteins that are targets for ...
 335-546 1.22e-05

Hedgehog signalling target; TALPID3 is a family of eukaryotic proteins that are targets for Hedgehog signalling. Mutations in this gene noticed first in chickens lead to multiple abnormalities of development.


Pssm-ID: 434634 [Multi-domain]  Cd Length: 1288  Bit Score: 49.89  E-value: 1.22e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  335 TQPAPATSPTTQPTPaTSPTTQPTPAtsPTTQPTPATSPTtqpapatSPTTQPAPATSPTTQPAPATspttqPAPATSPT 414
Cdd:pfam15324  964 QREPPVAASVPGDLP-TKETLLPTPV--PTPQPTPPCSPP-------SPLKEPSPVKTPDSSPCVSE-----HDFFPVKE 1028

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  415 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATN---PTTQPSVSS-SASTQPAPA 490
Cdd:pfam15324 1029 IPPEKGADTGPAVSLVITPTVTPIATPPPAATPTPPLSENSIDKLKSPSPELPKPWEDsdlPLEEENPNSeQEELHPRAV 1108

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  491 TSGTTQP-------APATSATTQP-APATSATTQPAPATSPTtqPAPATSATTQSVPVVTTQTT 546
Cdd:pfam15324 1109 VMSVARDeepesvvLPASPPEPKPlAPPPLGAAPPSPPQSPS--SSSSTLESSSSLTVTETETA 1170
dnaA PRK14086
chromosomal replication initiator protein DnaA;
328-523 1.22e-05

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 49.82  E-value: 1.22e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  328 APATSPTTQPAPATSPTTQPTPA-TSPTTQPTPATSPTTQPTPATSPTTQPAPaTSPTTQPA-PATSPTTQPAPATsptt 405
Cdd:PRK14086    85 AITVDPSAGEPAPPPPHARRTSEpELPRPGRRPYEGYGGPRADDRPPGLPRQD-QLPTARPAyPAYQQRPEPGAWP---- 159

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  406 qPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPsPATNPTTQPSVSSSAST 485
Cdd:PRK14086   160 -RAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDR-PRRDRTDRPEPPPGAGH 237

                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 1831519558  486 QPAPATSGTTQPAPATSATTQPAPATSAtTQPAPATSP 523
Cdd:PRK14086   238 VHRGGPGPPERDDAPVVPIRPSAPGPLA-AQPAPAPGP 274
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 310-451 1.40e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 49.68  E-value: 1.40e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  310 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATS-PTTQPTPATspttQPTPATSPTTQPTPATSPTTQPAPATSPTTQPA 388
Cdd:PRK14959   360 AMLPRLMPVESLRPSGGGASAPSGSAAEGPASGgAATIPTPGT----QGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVP 435

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831519558  389 PATSPTTQPAPATSPttQPAPATsPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGT 451
Cdd:PRK14959   436 WDDAPPAPPRSGIPP--RPAPRM-PEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPRT 495
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
317-489 1.41e-05

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 49.28  E-value: 1.41e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  317 PAPATSPTTQPAPATSptTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQ 396
Cdd:pfam05539  169 KTAVTTSKTTSWPTEV--SHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGS 246

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  397 P--APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP--TTQPTPGTSPTTQPAPATSPTTQPSPATN 472
Cdd:pfam05539  247 PqhPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTATPPPTTKRqeTGRPTPRPTATTQSGSSPPHSSPPGVQAN 326

                          170
                   ....*....|....*..
gi 1831519558  473 PTTQPSVSSSASTQPAP 489
Cdd:pfam05539  327 PTTQNLVDCKELDPPKP 343
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 315-444 1.44e-05

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 49.00  E-value: 1.44e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  315 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPaPATSPTTQPAPATSPT 394
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQP-EDEPVGPGAAPAAEPD 271

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  395 TQPAPAT-SPTTQPAPATSPTTQPAPATSPTTQPA-PATSPTTQPAPATSPT 444
Cdd:NF040712   272 EATRDAGePPAPGAAETPEAAEPPAPAPAAPAAPAaPEAEEPARPEPPPAPK 323
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 275-404 1.44e-05

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 49.00  E-value: 1.44e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  275 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPTPATSPT 354
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLA-SARRRRAGVEQPEDEPVGPGAAPAAEPD 271

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  355 TQPTPAT-SPTTQPTPATSPTTQPAPATSPTTQPA-PATSPTTQPAPATSPT 404
Cdd:NF040712   272 EATRDAGePPAPGAAETPEAAEPPAPAPAAPAAPAaPEAEEPARPEPPPAPK 323
PRK10856 PRK10856
cytoskeleton protein RodZ;
414-503 1.48e-05

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 48.87  E-value: 1.48e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  414 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPApATSG 493
Cdd:PRK10856   165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPT-DQAG 243

                           90
                   ....*....|
gi 1831519558  494 TTQPAPATSA 503
Cdd:PRK10856   244 VSTPAADPNA 253
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
300-397 1.57e-05

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 49.47  E-value: 1.57e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  300 ATSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTTQPAPATspTTQPTPATSPTTQPTPATSPTTQPTPATSPTTqpa 378
Cdd:PRK11907    17 LLTASNPKLAQAEEIVTTTPATStEAEQTTPVESDATEEADNT--ETPVAATTAAEAPSSSETAETSDPTSEATDTT--- 91

                           90
                   ....*....|....*....
gi 1831519558  379 paTSPTTQPAPATSPTTQP 397
Cdd:PRK11907    92 --TSEARTVTPAATETSKP 108
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 368-505 1.68e-05

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 49.08  E-value: 1.68e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  368 TPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTtqPAPATSPTTQPAPATSPTTQPAPATSPTTQP 447
Cdd:COG3266    257 APSQASSASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPA--APAAAAAAAAPAEAAAPQPTAAKPVVTETAA 334

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  448 TpgtsptTQPAPATsPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATT 505
Cdd:COG3266    335 P------AAPAPEA-AAAAAAPAAPAVAKKLAADEQWLASQPASHYTLQLLGASSEAA 385
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 241-390 1.87e-05

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 48.41  E-value: 1.87e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  241 ASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPaPATSPTTQPAPATSPTTQPAPATSPTTQPAPA 320
Cdd:PTZ00436   203 AAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAA-PAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKA 281

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  321 TSPttqPAPATSPTTQPAPATSPTTQPtPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPA 390
Cdd:PTZ00436   282 AAP---PAKAAAPPAKAAAAPAKAAAA-PAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAA 347
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
370-467 1.95e-05

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 49.08  E-value: 1.95e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  370 ATSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTTQPAPATspTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqpt 448
Cdd:PRK11907    17 LLTASNPKLAQAEEIVTTTPATStEAEQTTPVESDATEEADNT--ETPVAATTAAEAPSSSETAETSDPTSEATDTT--- 91

                           90
                   ....*....|....*....
gi 1831519558  449 pgTSPTTQPAPATSPTTQP 467
Cdd:PRK11907    92 --TSEARTVTPAATETSKP 108
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
310-407 2.07e-05

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 49.08  E-value: 2.07e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  310 ATSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTTQPTPATspTTQPTPATSPTTQPTPATSPTTQPAPATSPTTqpa 388
Cdd:PRK11907    17 LLTASNPKLAQAEEIVTTTPATStEAEQTTPVESDATEEADNT--ETPVAATTAAEAPSSSETAETSDPTSEATDTT--- 91

                           90
                   ....*....|....*....
gi 1831519558  389 paTSPTTQPAPATSPTTQP 407
Cdd:PRK11907    92 --TSEARTVTPAATETSKP 108
PHA03369 PHA03369
capsid maturational protease; Provisional
 239-544 2.23e-05

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 48.84  E-value: 2.23e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  239 VPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPA-PATSPTTQPAPATSPTTQPAPaTSPTTQPAPATSptTQP 317
Cdd:PHA03369   354 TAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSvPARSPMTAYPPVPQFCGDPGL-VSPYNPQSPGTS--YGP 430

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  318 APATSPTTQPapaTSPTTQPAPATS--PTTQPTPATSPT-----------TQPTPATSPTTQPTPATSPTTQPAPATSPT 384
Cdd:PHA03369   431 EPVGPVPPQP---TNPYVMPISMANmvYPGHPQEHGHERkrkrggelkeeLIETLKLVKKLKEEQESLAKELEATAHKSE 507

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  385 TQPAPATSptTQPAPATSPTTQPAPATSPttqpaPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPT 464
Cdd:PHA03369   508 IKKIAESE--FKNAGAKTAAANIEPNCSA-----DAAAPATKRARPETKTELEAVVRFPYQIRNMESPAFVHSFTSTTLA 580

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  465 TqpSPATNPTTQPSVSSSASTQPAPATS---GTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVPVV 541
Cdd:PHA03369   581 A--AAGQGSDTAEALAGAIETLLTQASAqpaGLSLPAPAVPVNASTPASTPPPLAPQEPPQPGTSAPSLETSLPQQKPVL 658


                   ...
gi 1831519558  542 TTQ 544
Cdd:PHA03369   659 SKG 661
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 240-351 2.30e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 48.91  E-value: 2.30e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASS-PTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAP---ATSPTT 315
Cdd:PRK14959   380 APSGSAAEGPASGgAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPrpaPRMPEA 459

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1831519558  316 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPAT 351
Cdd:PRK14959   460 SPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPRT 495
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 276-440 2.39e-05

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 48.41  E-value: 2.39e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  276 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPA-PATSPTTQPAPATSPTTQPAPATSPttqPAPATSPttqptPATSPT 354
Cdd:PTZ00436   191 EDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAkAAAAPAKAAAPPAKAAAAPAKAAAA---PAKAAAP-----PAKAAA 262

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  355 TQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPaPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 434
Cdd:PTZ00436   263 PPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAA-PAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPP 341


                   ....*.
gi 1831519558  435 TQPAPA 440
Cdd:PTZ00436   342 AKAAAA 347
motB PRK05996
MotB family protein;
239-328 2.43e-05

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 48.54  E-value: 2.43e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  239 VPASTSTQPAPASSPTTQPAPATSPTTqpAPATSPTTQPAPATSPTTQPAPAT-SPTTQPAPATSPTTQPAPATSPTTQP 317
Cdd:PRK05996   190 VEVTTAGDLLPPGQAREQAQGAKSATA--APATVPQAAPLPQAQPKKAATEEElIADAKKAATGEPAANAAKAAKPEPMP 267

                           90
                   ....*....|.
gi 1831519558  318 APATSPTTQPA 328
Cdd:PRK05996   268 DDQQKEAEQLQ 278
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
320-417 2.56e-05

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 48.70  E-value: 2.56e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  320 ATSPTTQPAPATSPTTQPAPATS-PTTQPTPATSPTTQPTPATspTTQPTPATSPTTQPAPATSPTTQPAPATSPTTqpa 398
Cdd:PRK11907    17 LLTASNPKLAQAEEIVTTTPATStEAEQTTPVESDATEEADNT--ETPVAATTAAEAPSSSETAETSDPTSEATDTT--- 91

                           90
                   ....*....|....*....
gi 1831519558  399 paTSPTTQPAPATSPTTQP 417
Cdd:PRK11907    92 --TSEARTVTPAATETSKP 108
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 241-400 2.63e-05

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 48.02  E-value: 2.63e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  241 ASTSTQPAPASSPTTQPAPATSPTTQPA-PATSPTTQPAPATSPTTQPAPATSPttqPAPATSPTTQPApaTSPTTQPAP 319
Cdd:PTZ00436   196 AAAAKQKAAAKKAAAPSGKKSAKAAAPAkAAAAPAKAAAPPAKAAAAPAKAAAA---PAKAAAPPAKAA--APPAKAAAP 270

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  320 ATSPTTQPAPATSPttqPAPATSPTTQPTPATSPTTQPtPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAP 399
Cdd:PTZ00436   271 PAKAAAPPAKAAAP---PAKAAAPPAKAAAAPAKAAAA-PAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAA 346


                   .
gi 1831519558  400 A 400
Cdd:PTZ00436   347 A 347
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 243-377 2.63e-05

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 48.22  E-value: 2.63e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  243 TSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAPATS 322
Cdd:NF040712   191 DFGRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLA-SARRRRAGVEQPEDEPVGPGAAPAAE 269

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  323 PTTQPAPATSPTTQPAPATSPTTQPT-PATSPTTQPTpATSPTTQPTPATSPTTQP 377
Cdd:NF040712   270 PDEATRDAGEPPAPGAAETPEAAEPPaPAPAAPAAPA-APEAEEPARPEPPPAPKP 324
PRK10905 PRK10905
cell division protein DamX; Validated
 258-481 2.63e-05

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 48.01  E-value: 2.63e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  258 APATSPTTQPAPATSPTTQPAPAT--SPTTQPAPATSPTTQPAPATSP-TTQPAPATSPTTQPAPATSPTTQPAPATSPT 334
Cdd:PRK10905    22 APSTSSSDQTASGEKSIDLAGNATdqANGVQPAPGTTSAEQTAGNTQQdVSLPPISSTPTQGQTPVATDGQQRVEVQGDL 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  335 TQPAPATSPTTQPTPATSPTTQPT-PAT-SPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS 412
Cdd:PRK10905   102 NNALTQPQNQQQLNNVAVNSTLPTePATvAPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQ 181

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  413 PTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTT------QPSPATNPTTQPSVSS 481
Cdd:PRK10905   182 TPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAgnvgslKSAPSSHYTLQLSSSS 256
PRK10856 PRK10856
cytoskeleton protein RodZ;
401-484 2.72e-05

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 48.10  E-value: 2.72e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  401 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVS 480
Cdd:PRK10856   166 TSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVS 245


                   ....
gi 1831519558  481 SSAS 484
Cdd:PRK10856   246 TPAA 249
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 248-393 2.73e-05

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 48.93  E-value: 2.73e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  248 APASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPapatsptTQPAPATSPTTQPAPATSPTTQPAPATSPtTQP 327
Cdd:PRK10263   742 EPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQP-------QQPVAPQPQYQQPQQPVAPQPQYQQPQQP-VAP 813

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  328 APATSPTTQPAPATSPTTQPTPATSPTTQPT---PATSPTTQPTPATSPTTqPAPATSPTTQPAPATSP 393
Cdd:PRK10263   814 QPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTllhPLLMRNGDSRPLHKPTT-PLPSLDLLTPPPSEVEP 881
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 239-346 2.80e-05

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 48.31  E-value: 2.80e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  239 VPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQP--APATSPTTQPAPATSPTTQPAPATSPTTQPAPATsPTTQ 316
Cdd:COG3266    268 ATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAaaAAAAAPAEAAAPQPTAAKPVVTETAAPAAPAPEA-AAAA 346

                           90       100       110
                   ....*....|....*....|....*....|
gi 1831519558  317 PAPATSPTTQPAPATSPTTQPAPATSPTTQ 346
Cdd:COG3266    347 AAPAAPAVAKKLAADEQWLASQPASHYTLQ 376
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 265-413 2.87e-05

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 47.84  E-value: 2.87e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  265 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATspttqPAPATSPT 344
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEP-----VGPGAAPA 267

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  345 TQPTPATSPTTQPtPATSPTTQPTPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAPATSP 413
Cdd:NF040712   268 AEPDEATRDAGEP-PAPGAAETPEAAEPPAPAPAAPAAPAA-PEAEEPARPEPPPAPKPKRRRRRASVP 334
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
380-477 2.99e-05

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 48.70  E-value: 2.99e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  380 ATSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTTQPAPATspTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTqpa 458
Cdd:PRK11907    17 LLTASNPKLAQAEEIVTTTPATStEAEQTTPVESDATEEADNT--ETPVAATTAAEAPSSSETAETSDPTSEATDTT--- 91

                           90
                   ....*....|....*....
gi 1831519558  459 paTSPTTQPSPATNPTTQP 477
Cdd:PRK11907    92 --TSEARTVTPAATETSKP 108
PRK10856 PRK10856
cytoskeleton protein RodZ;
404-488 3.02e-05

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 47.71  E-value: 3.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  404 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSA 483
Cdd:PRK10856   165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGV 244


                   ....*
gi 1831519558  484 STQPA 488
Cdd:PRK10856   245 STPAA 249
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
428-637 3.19e-05

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 48.21  E-value: 3.19e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  428 APATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQP 507
Cdd:COG3469      5 STAASPTAGGASATAVTLLGAAATAASVTLTAATATTVVSTTGSVVVAASGSAGSGTGTTAASSTAATSSTTSTTATATA 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  508 APATSATTQPAPATSPTTQPAPATSATTQSVPVVTTQTTMGTSPTTAGissspaatSPSTAVTSPSSLGTSSSPLPSSIS 587
Cdd:COG3469     85 AAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVTSTTSSTAGS--------TTTSGASATSSAGSTTTTTTVSGT 156

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 1831519558  588 TSALPIASSSASSSPSAASSTTPVVLSSSTIQSSSGTFPSSVASSPSTVG 637
Cdd:COG3469    157 ETATGGTTTTSTTTTTTSASTTPSATTTATATTASGATTPSATTTATTTG 206
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
420-515 3.45e-05

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 48.31  E-value: 3.45e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  420 ATSPTTQPAPATSPTTQPAPATSPTTQptpGTSPTTQPAPATSPTTQ-PSPATNPTTQPSVSSSASTQPAPAtsgTTQPA 498
Cdd:PRK11907    17 LLTASNPKLAQAEEIVTTTPATSTEAE---QTTPVESDATEEADNTEtPVAATTAAEAPSSSETAETSDPTS---EATDT 90

                           90
                   ....*....|....*..
gi 1831519558  499 PATSATTQPAPATSATT 515
Cdd:PRK11907    91 TTSEARTVTPAATETSK 107
PTZ00395 PTZ00395
Sec24-related protein; Provisional
 252-486 3.47e-05

Sec24-related protein; Provisional


Pssm-ID: 185594 [Multi-domain]  Cd Length: 1560  Bit Score: 48.53  E-value: 3.47e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  252 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAT 331
Cdd:PTZ00395   346 SPNAASAGAPFNGLGNQADGGHINQVHPDARGAWAGGPHSNASYNCAAYSNAAQSNAAQSNAGFSNAGYSNPGNSNPGYN 425

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  332 SPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPApATSPTTQPAPATSPTTQPAPAT 411
Cdd:PTZ00395   426 NAPNSNTPYNNPPNSNTPYSNPPNSNPPYSNLPYSNTPYSNAPLSNAPPSSAKDHHS-AYHAAYQHRAANQPAANLPTAN 504

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  412 SPTTQPAPATSPTTQPAPATSPTTQPAP-ATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQ 486
Cdd:PTZ00395   505 QPAANNFHGAAGNSVGNPFASRPFGSAPyGGNAATTADPNGIAKREDHPEGGTNRQKYEQSDEESVESSSSENSSE 580
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 406-524 3.48e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 48.40  E-value: 3.48e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  406 QPAPATSPTT------QPAPATSPTTQPAPATSPTTQPAPATSPTTQPTpgtsPTTQPAPATSPTTQPSPATNPttQPSV 479
Cdd:PRK14954   381 APSPAGSPDVkkkapePDLPQPDRHPGPAKPEAPGARPAELPSPASAPT----PEQQPPVARSAPLPPSPQASA--PRNV 454

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1831519558  480 SSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPT 524
Cdd:PRK14954   455 ASGKPGVDLGSWQGKFMNFTRNGSRKQPVQASSSDAAQTGVFEGV 499
flhF PRK06995
flagellar biosynthesis protein FlhF;
238-342 3.51e-05

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 48.04  E-value: 3.51e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  238 VVPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP 317
Cdd:PRK06995    51 LAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAAAENAAR 130

                           90       100
                   ....*....|....*....|....*
gi 1831519558  318 APATSPTTQPAPATSPTTQPAPATS 342
Cdd:PRK06995   131 RLARAAAAAPRPRVPADAAAAVADA 155
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
400-497 3.95e-05

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 48.31  E-value: 3.95e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  400 ATSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTTQPAPATspttqPTPGTSPTTQPAPATSPTTQPSPATnPTTQPS 478
Cdd:PRK11907    17 LLTASNPKLAQAEEIVTTTPATStEAEQTTPVESDATEEADNT-----ETPVAATTAAEAPSSSETAETSDPT-SEATDT 90

                           90
                   ....*....|....*....
gi 1831519558  479 VSSSASTQPAPATSgTTQP 497
Cdd:PRK11907    91 TTSEARTVTPAATE-TSKP 108
dnaA PRK14086
chromosomal replication initiator protein DnaA;
308-491 4.03e-05

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 47.90  E-value: 4.03e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  308 APATSPTTQPAPATSPTTQPAPA-TSPTTQPAPATSPTTQPTPATSPTTQPTPaTSPTTQPT-PATSPTTQPAPATSPTT 385
Cdd:PRK14086    85 AITVDPSAGEPAPPPPHARRTSEpELPRPGRRPYEGYGGPRADDRPPGLPRQD-QLPTARPAyPAYQQRPEPGAWPRAAD 163

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  386 QPAPATSPT--TQPAPATSPtTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPT--TQPTPGTSPTTQPAPAT 461
Cdd:PRK14086   164 DYGWQQQRLgfPPRAPYASP-ASYAPEQERDREPYDAGRPEY-DQRRRDYDHPRPDWDRPRrdRTDRPEPPPGAGHVHRG 241

                          170       180       190
                   ....*....|....*....|....*....|.
gi 1831519558  462 SP-TTQPSPATNPTTQPSVSSSASTQPAPAT 491
Cdd:PRK14086   242 GPgPPERDDAPVVPIRPSAPGPLAAQPAPAP 272
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 293-551 4.07e-05

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 48.15  E-value: 4.07e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  293 PTTQPAPATSPTTQPAPATSPTTQPAPATSpTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTqPTPATS 372
Cdd:PTZ00449   510 PPEGPEASGLPPKAPGDKEGEEGEHEDSKE-SDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEF-PKDPKH 587

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  373 PTTQPAPATSptTQPAPATSPTTQPAPATsPTTQPAPATSPttQPAPATSPTTQPAPatsptTQPAPATSPTTQPTPGTS 452
Cdd:PTZ00449   588 PKDPEEPKKP--KRPRSAQRPTRPKSPKL-PELLDIPKSPK--RPESPKSPKRPPPP-----QRPSSPERPEGPKIIKSP 657

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  453 -PTTQPAPATSPT---------TQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATsaTTQPAPATSATTQPAPATS 522
Cdd:PTZ00449   658 kPPKSPKPPFDPKfkekfyddyLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFT--TPRPLPPKLPRDEEFPFEP 735

                          250       260
                   ....*....|....*....|....*....
gi 1831519558  523 PTTQPAPATSATTQSVPVVTTQTTMGTSP 551
Cdd:PTZ00449   736 IGDPDAEQPDDIEFFTPPEEERTFFHETP 764
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 246-410 4.21e-05

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 47.64  E-value: 4.21e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  246 QPAPASSPTTQPAPATSPTTQPAPATSPTTQPA-PATSPTTQPAPATSPTTQPAPATSPttqPAPATSPTTQPApaTSPT 324
Cdd:PTZ00436   191 EDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAkAAAAPAKAAAPPAKAAAAPAKAAAA---PAKAAAPPAKAA--APPA 265

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  325 TQPAPATSPTTQPAPATSPttqPTPATSPTTQPTPATSPTTQPtPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 404
Cdd:PTZ00436   266 KAAAPPAKAAAPPAKAAAP---PAKAAAPPAKAAAAPAKAAAA-PAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPP 341


                   ....*.
gi 1831519558  405 TQPAPA 410
Cdd:PTZ00436   342 AKAAAA 347
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 412-536 4.26e-05

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 47.92  E-value: 4.26e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  412 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPAT 491
Cdd:COG3266    257 APSQASSASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAAAPAEAAAPQPTAAKPVVTETAAPA 336

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1831519558  492 SgttqPAPATSATTqPAPATSATTQPAPATSPTTQPAPATSATTQ 536
Cdd:COG3266    337 A----PAPEAAAAA-AAPAAPAVAKKLAADEQWLASQPASHYTLQ 376
motB PRK12799
flagellar motor protein MotB; Reviewed
 411-536 4.35e-05

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 47.79  E-value: 4.35e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  411 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSV--SSSASTQPA 488
Cdd:PRK12799   298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPGTVALpaAEPVNMQPQ 377

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1831519558  489 PATSGTTQpapaTSATTQPAPATSATTQPAPATSPTTQPAPATSATTQ 536
Cdd:PRK12799   378 PMSTTETQ----QSSTGNITSTANGPTTSLPAAPASNIPVSPTSRDAQ 421
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 258-403 4.38e-05

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 48.16  E-value: 4.38e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  258 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPapatsptTQPAPATSPTTQPAPATSPTTQPAPATSPtTQP 337
Cdd:PRK10263   742 EPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQP-------QQPVAPQPQYQQPQQPVAPQPQYQQPQQP-VAP 813

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  338 APATSPTTQPTPATSPTTQPTPATSPTTQPT---PATSPTTQPAPATSPTTqPAPATSPTTQPAPATSP 403
Cdd:PRK10263   814 QPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTllhPLLMRNGDSRPLHKPTT-PLPSLDLLTPPPSEVEP 881
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 438-533 4.49e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 47.88  E-value: 4.49e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  438 APATSPTT-QPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSAsTQPAPATSGTTQPAPATSAttqPAPATSATTQ 516
Cdd:PRK14950   361 VPVPAPQPaKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETA-TPPPVPPRPVAPPVPHTPE---SAPKLTRAAI 436

                           90
                   ....*....|....*..
gi 1831519558  517 PAPATSPTTQPAPATSA 533
Cdd:PRK14950   437 PVDEKPKYTPPAPPKEE 453
PPE COG5651
PPE-repeat protein [Function unknown];
250-480 4.70e-05

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 47.58  E-value: 4.70e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  250 ASSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAP 329
Cdd:COG5651    157 ASAAAVALTPFTQP---PPTITNPGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSGPIGLNSGPGNTGFAG 233

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  330 ATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAP-ATSPTTQPA 408
Cdd:COG5651    234 TGAAAGAAAAAAAAAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAaATGLGLGAG 313

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  409 PATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVS 480
Cdd:COG5651    314 GAAGAAGATGAGAALGAGAAAAAAGAAAGAGAAAAAAAGGAGGGGGGALGAGGGGGSAGAAAGAASGGGAAA 385
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 255-403 5.07e-05

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 47.07  E-value: 5.07e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  255 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAPATSPT 334
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLA-SARRRRAGVEQPEDEPVGPGAAPAAEPD 271

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  335 TQPAPATsPTTQPTPATSPTTQPTPATSPTtqptpATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP 403
Cdd:NF040712   272 EATRDAG-EPPAPGAAETPEAAEPPAPAPA-----APAAPAAPEAEEPARPEPPPAPKPKRRRRRASVP 334
PRK11633 PRK11633
cell division protein DedD; Provisional
 406-513 5.15e-05

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 46.15  E-value: 5.15e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  406 QPAPATSPTTQPAPatsptTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSAST 485
Cdd:PRK11633    51 DEPDMMPAATQALP-----TQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKV 125

                           90       100
                   ....*....|....*....|....*...
gi 1831519558  486 QPAPatsgTTQPAPATSATTQPAPATSA 513
Cdd:PRK11633   126 EAPP----APKPEPKPVVEEKAAPTGKA 149
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 381-460 5.25e-05

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 47.20  E-value: 5.25e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  381 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSpttqpAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPA 460
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASA-----VEEKSPSEESATATAPESPSTSVPSSGSDAAST 149
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 325-457 5.53e-05

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 47.07  E-value: 5.53e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  325 TQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTqPAPATSPTTQPAPATSPTTQPAPATSPT 404
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLA-SARRRRAGVEQPEDEPVGPGAAPAAEPD 271

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  405 TQPAPAT-SPTTQPAPATSPTTQPAPATSPTTQPApATSPTTQPTPGTSPTTQP 457
Cdd:NF040712   272 EATRDAGePPAPGAAETPEAAEPPAPAPAAPAAPA-APEAEEPARPEPPPAPKP 324
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 345-540 5.91e-05

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 47.15  E-value: 5.91e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  345 TQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 424
Cdd:COG3266    159 EEQLLLLALQDIQGTLQALGAVAALLGLRKAEEALALRAGSAAADALALLLLLLASALGEAVAAAAELAALALLAAGAAE 238

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  425 TQPAPATSPTTQPAPAT-SPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSA 503
Cdd:COG3266    239 VLTARLVLLLLIIGSALkAPSQASSASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAAAPAEAA 318

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1831519558  504 TTQPAPATSATTQPAPATSP-----TTQPAPATSATTQSVPV 540
Cdd:COG3266    319 APQPTAAKPVVTETAAPAAPapeaaAAAAAPAAPAVAKKLAA 360
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
250-388 6.25e-05

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 47.04  E-value: 6.25e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  250 ASSPTTQPAPATSPTTQPAPATSptTQPAPATSPTTQPAPATSPTTQPAPAT---SPTTQPAPATSPTTQPAPATSPTTQ 326
Cdd:PRK13335    20 AITVTTQSVKAEKIQSTKVDKVP--TLKAERLAMINITAGANSATTQAANTRqerTPKLEKAPNTNEEKTSASKIEKISQ 97

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  327 PaPATSPTTQPAPATSPTTQPTPATSP-TTQPTPA-TSPTTQPTPATSPTTQPAPATSPTTQPA 388
Cdd:PRK13335    98 P-KQEEQKSLNISATPAPKQEQSQTTTeSTTPKTKvTTPPSTNTPQPMQSTKSDTPQSPTIKQA 160
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
263-403 6.26e-05

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 47.10  E-value: 6.26e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  263 PTTQPAPATSPTTQpAPATSPTT----QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT-TQPAPATSPttQP 337
Cdd:PRK12373   175 PVVKPGPQIGRYAS-EPAGGLTSlteeAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAApVPPSEAARP--KS 251

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  338 APATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP 403
Cdd:PRK12373   252 ADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIA 317
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 268-413 6.86e-05

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 47.77  E-value: 6.86e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  268 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPapatsptTQPAPATSPTTQPAPATSPTTQPAPATSPtTQP 347
Cdd:PRK10263   742 EPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQP-------QQPVAPQPQYQQPQQPVAPQPQYQQPQQP-VAP 813

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  348 TPATSPTTQPTPATSPTTQPTPATSPTTQPA---PATSPTTQPAPATSPTTqPAPATSPTTQPAPATSP 413
Cdd:PRK10263   814 QPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTllhPLLMRNGDSRPLHKPTT-PLPSLDLLTPPPSEVEP 881
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 351-430 7.00e-05

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 46.81  E-value: 7.00e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  351 TSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSpttqpAPATSPTTQPAPATSPTTQPAPATSPTTQPAPA 430
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASA-----VEEKSPSEESATATAPESPSTSVPSSGSDAAST 149
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 428-539 7.72e-05

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 46.77  E-value: 7.72e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  428 APATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSA--STQPAPATSGTTQPAPATSATT 505
Cdd:COG3266    257 APSQASSASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAAapAEAAAPQPTAAKPVVTETAAPA 336

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1831519558  506 QPAPATSATTqPAPATSPTTQPAPATSATTQSVP 539
Cdd:COG3266    337 APAPEAAAAA-AAPAAPAVAKKLAADEQWLASQP 369
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 341-420 7.90e-05

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 46.81  E-value: 7.90e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  341 TSPTTQPTPATSPTTQPTPATSPTtqPTPATSPTTQPAPATSPTTQPapaTSPTTQPAPATSPTTQPAPATSPTTQPAPA 420
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPT--PSPPASPASGMSAAPASAVEE---KSPSEESATATAPESPSTSVPSSGSDAAST 149
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 361-440 8.11e-05

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 46.81  E-value: 8.11e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  361 TSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSpttqpAPATSPTTQPAPATSPTTQPAPATSPTTQPAPA 440
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASA-----VEEKSPSEESATATAPESPSTSVPSSGSDAAST 149
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
373-523 8.48e-05

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 46.72  E-value: 8.48e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  373 PTTQPAPATSPTTQpAPATSPTT----QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATspttQPAPATSPTTQPT 448
Cdd:PRK12373   175 PVVKPGPQIGRYAS-EPAGGLTSlteeAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQG----DAAPVPPSEAARP 249

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  449 PGTSPTTQPAPATSPTTQPSPATNPTtqpsvssSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSP 523
Cdd:PRK12373   250 KSADAETNAALKTPATAPKAAAKNAK-------APEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIA 317
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 385-527 9.02e-05

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 46.30  E-value: 9.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  385 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTspttqPAPATSPT 464
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEP-----VGPGAAPA 267

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831519558  465 TQPSPATNPTTQPSVSSSASTQPAPATsgttqPAPATSATTQPApATSATTQPAPATSPTTQP 527
Cdd:NF040712   268 AEPDEATRDAGEPPAPGAAETPEAAEP-----PAPAPAAPAAPA-APEAEEPARPEPPPAPKP 324
PTZ00395 PTZ00395
Sec24-related protein; Provisional
 282-492 9.08e-05

Sec24-related protein; Provisional


Pssm-ID: 185594 [Multi-domain]  Cd Length: 1560  Bit Score: 47.38  E-value: 9.08e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  282 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPAT 361
Cdd:PTZ00395   346 SPNAASAGAPFNGLGNQADGGHINQVHPDARGAWAGGPHSNASYNCAAYSNAAQSNAAQSNAGFSNAGYSNPGNSNPGYN 425

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  362 SPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPApATSPTTQPAPATSPTTQPAPAT 441
Cdd:PTZ00395   426 NAPNSNTPYNNPPNSNTPYSNPPNSNPPYSNLPYSNTPYSNAPLSNAPPSSAKDHHS-AYHAAYQHRAANQPAANLPTAN 504

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  442 SPTTQPTPGTSPTTQPAP-ATSPTTQPSPATNPTT--QPSVSSSASTQPAPATS 492
Cdd:PTZ00395   505 QPAANNFHGAAGNSVGNPfASRPFGSAPYGGNAATtaDPNGIAKREDHPEGGTN 558
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
273-413 9.41e-05

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 46.33  E-value: 9.41e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  273 PTTQPAPATSPTTQpAPATSPTT----QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT-TQPAPATSPttQP 347
Cdd:PRK12373   175 PVVKPGPQIGRYAS-EPAGGLTSlteeAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAApVPPSEAARP--KS 251

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  348 TPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP 413
Cdd:PRK12373   252 ADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIA 317
Retinal pfam15449
Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. ...
 357-550 9.50e-05

Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. Mutations of the gene encoding this protein have been associated with retinal disorders such as retinitis pigmentosa and late-onset progressive retinal atrophy. The function of this family of proteins is unknown, but it is likely to be important in the development and function of the retina.


Pssm-ID: 464722 [Multi-domain]  Cd Length: 1293  Bit Score: 47.08  E-value: 9.50e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  357 PTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTTQPA---PATSPTTQPAPATSPTTQPAPA-- 430
Cdd:pfam15449  938 HPPAASHNPEAEGGAQSQAQAEEAASLSKQPRKAIPwHHSSHTSGQSRTSEPSlarPTRGPHSPEAPRQSQERSPPLVrk 1017

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  431 TSPT-TQPAPATSPTTQPTPGTSPTTQPAPATSPTtQPSPATNPTTqPSVSSSASTQPAPATSGTTQPAPatSATTQPAP 509
Cdd:pfam15449 1018 ASPTrAHWAPRADKRHPSLPSSHRPAQPSLPTVQR-SPSPPLSPRA-PSPPRSPRVLSPPTSKKRTSPPP--QHKLPSPP 1093

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 1831519558  510 ATSATTQPAPATSPT--TQPAPATSATTQSVPVVTTQTTMGTS 550
Cdd:pfam15449 1094 PESPPAQHKLSSPPTqrTEASSPSSGPSPSPPTSPSQGHKETR 1136
flhF PRK06995
flagellar biosynthesis protein FlhF;
241-352 9.51e-05

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 46.50  E-value: 9.51e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  241 ASTSTQPAPASSPTTQPAPATSPTTQPApATSPTTQPAPATSPTTQPAPATSPTTQPApatspTTQPAPATSPTTQPAPA 320
Cdd:PRK06995    50 ALAPPAAAAPAAAQPPPAAAPAAVSRPA-APAAEPAPWLVEHAKRLTAQREQLVARAA-----APAAPEAQAPAAPAERA 123

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1831519558  321 TSPTTQPAPATSPTTQPAPATSPTTQPTPATS 352
Cdd:PRK06995   124 AAENAARRLARAAAAAPRPRVPADAAAAVADA 155
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 371-450 9.65e-05

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 46.43  E-value: 9.65e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  371 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSpttqpAPATSPTTQPAPATSPTTQPAPATSPTTQPTPG 450
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASA-----VEEKSPSEESATATAPESPSTSVPSSGSDAAST 149
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 250-429 9.71e-05

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 46.69  E-value: 9.71e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  250 ASSPTTQPAPATSPTTQPAPATSPTTQPAPAT---SPTTQPAPAT-SPTTQPAPAT-SPTTQPAPAT-SPTTQPAPAT-S 322
Cdd:NF033839   294 APKPGMQPSPQPEKKEVKPEPETPKPEVKPQLekpKPEVKPQPEKpKPEVKPQLETpKPEVKPQPEKpKPEVKPQPEKpK 373

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  323 PTTQPAPAT-SPTTQPAPAT-SPTTQPTPAT-SPTTQPTPAT-SPTTQPTPAT-SPTTQPAPAT-SPTTQPAPAT-SPTT 395
Cdd:NF033839   374 PEVKPQPETpKPEVKPQPEKpKPEVKPQPEKpKPEVKPQPEKpKPEVKPQPEKpKPEVKPQPEKpKPEVKPQPEKpKPEV 453

                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 1831519558  396 QPAPAT-SPTTQPAPAT-SPTTQPAPATSPTTQPAP 429
Cdd:NF033839   454 KPQPETpKPEVKPQPEKpKPEVKPQPEKPKPDNSKP 489
PPE COG5651
PPE-repeat protein [Function unknown];
260-484 9.82e-05

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 46.42  E-value: 9.82e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  260 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAP 339
Cdd:COG5651    164 LTPFTQPPPTITNPGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSGPIGLNSGPGNTGFAGTGAAAGAAAA 243

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  340 ATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATsptTQPAPATSPTTQPAP 419
Cdd:COG5651    244 AAAAAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAAA---TGLGLGAGGAAGAAG 320

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  420 ATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSAS 484
Cdd:COG5651    321 ATGAGAALGAGAAAAAAGAAAGAGAAAAAAAGGAGGGGGGALGAGGGGGSAGAAAGAASGGGAAA 385
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 261-340 9.91e-05

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 46.43  E-value: 9.91e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  261 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSpttqpAPATSPTTQPAPATSPTTQPAPATSPTTQPAPA 340
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASA-----VEEKSPSEESATATAPESPSTSVPSSGSDAAST 149
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 277-359 1.01e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 46.53  E-value: 1.01e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  277 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ-PAPATSPTTQPAPATSPTTQPTPATSPTT 355
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGsLAPPPPPPPGPAGAAPGAALPVRVPAPPA 98


                   ....
gi 1831519558  356 QPTP 359
Cdd:NF041121    99 LPNP 102
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 251-330 1.02e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 46.43  E-value: 1.02e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  251 SSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSpttqpAPATSPTTQPAPATSPTTQPAPATSPTTQPAPA 330
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASA-----VEEKSPSEESATATAPESPSTSVPSSGSDAAST 149
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 286-446 1.03e-04

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 46.10  E-value: 1.03e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  286 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPA-PATSPTTQPAPATSPTTQPAPATSPttqptPATSPTTQPTPATSPT 364
Cdd:PTZ00436   191 EDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAkAAAAPAKAAAPPAKAAAAPAKAAAA-----PAKAAAPPAKAAAPPA 265

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  365 TQPTPATSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPaPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 444
Cdd:PTZ00436   266 KAAAPPAKAAAPPAKAAAP---PAKAAAPPAKAAAAPAKAAAA-PAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPP 341


                   ..
gi 1831519558  445 TQ 446
Cdd:PTZ00436   342 AK 343
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 376-450 1.05e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 46.86  E-value: 1.05e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  376 QPAPATSPTT------QPAPATSPTTQPAPATSPTTQPAPATSpttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPTP 449
Cdd:PRK14954   381 APSPAGSPDVkkkapePDLPQPDRHPGPAKPEAPGARPAELPS----PASAPTPEQQPPVARSAPLPPSPQASAPRNVAS 456


                   .
gi 1831519558  450 G 450
Cdd:PRK14954   457 G 457
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
283-423 1.18e-04

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 46.33  E-value: 1.18e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  283 PTTQPAPATSPTTQpAPATSPTT----QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT-TQPTPATSPttQP 357
Cdd:PRK12373   175 PVVKPGPQIGRYAS-EPAGGLTSlteeAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAApVPPSEAARP--KS 251

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  358 TPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP 423
Cdd:PRK12373   252 ADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIA 317
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 255-340 1.18e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 46.15  E-value: 1.18e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  255 TQPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPT 334
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPV 91


                   ....*.
gi 1831519558  335 TQPAPA 340
Cdd:NF041121    92 RVPAPP 97
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 271-343 1.19e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 46.04  E-value: 1.19e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831519558  271 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSpttqpAPATSPTTQPAPATSPTTQPAPATSP 343
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASA-----VEEKSPSEESATATAPESPSTSVPSS 142
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 287-369 1.21e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 46.15  E-value: 1.21e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  287 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ-PAPATSPTTQPTPATSPTTQPTPATSPTT 365
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGsLAPPPPPPPGPAGAAPGAALPVRVPAPPA 98


                   ....
gi 1831519558  366 QPTP 369
Cdd:NF041121    99 LPNP 102
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 295-380 1.25e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 46.15  E-value: 1.25e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  295 TQPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTqPTPATSPTTQPTPATSPT 374
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPV 91


                   ....*.
gi 1831519558  375 TQPAPA 380
Cdd:NF041121    92 RVPAPP 97
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 239-328 1.26e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.81  E-value: 1.26e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  239 VPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS-PTTQP---APATSPTTQPAPATSPT 314
Cdd:PRK12270    60 AAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVeDEVTPlrgAAAAVAKNMDASLEVPT 139

                           90
                   ....*....|....
gi 1831519558  315 tqpapATSPTTQPA 328
Cdd:PRK12270   140 -----ATSVRAVPA 148
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 260-387 1.26e-04

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 45.62  E-value: 1.26e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  260 ATSPTTQPAPATSPTTQPAPATSPTTQpAPATSPTTQPAPATSPTTQPA--PATSPTTQPAPATSPTTQPAPATSPTTQP 337
Cdd:PHA02682    68 ANSACMQRPSGQSPLAPSPACAAPAPA-CPACAPAAPAPAVTCPAPAPAcpPATAPTCPPPAVCPAPARPAPACPPSTRQ 146

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1831519558  338 APATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQP 387
Cdd:PHA02682   147 CPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAASPVLEP 196
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 467-555 1.29e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 46.34  E-value: 1.29e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  467 PSPATNPTtQPSVSSSASTQPAPATSGTTQPAPATSATT---QPAPATSATTQPAPATSPT-TQPAPATSATTQSVPVVT 542
Cdd:PRK14950   362 PVPAPQPA-KPTAAAPSPVRPTPAPSTRPKAAAAANIPPkepVRETATPPPVPPRPVAPPVpHTPESAPKLTRAAIPVDE 440

                           90
                   ....*....|...
gi 1831519558  543 TQTTMGTSPTTAG 555
Cdd:PRK14950   441 KPKYTPPAPPKEE 453
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 270-397 1.32e-04

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 45.62  E-value: 1.32e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  270 ATSPTTQPAPATSPTTQPAPATSPTTQpAPATSPTTQPAPATSPTTQPA--PATSPTTQPAPATSPTTQPAPATSPTTQP 347
Cdd:PHA02682    68 ANSACMQRPSGQSPLAPSPACAAPAPA-CPACAPAAPAPAVTCPAPAPAcpPATAPTCPPPAVCPAPARPAPACPPSTRQ 146

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1831519558  348 TPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQP 397
Cdd:PHA02682   147 CPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAASPVLEP 196
Herpes_TAF50 pfam03326
Herpesvirus transcription activation factor (transactivator); This family includes EBV BRLF1 ...
 249-539 1.33e-04

Herpesvirus transcription activation factor (transactivator); This family includes EBV BRLF1 and similar ORF 50 proteins from other herpesviruses.


Pssm-ID: 308764 [Multi-domain]  Cd Length: 568  Bit Score: 46.23  E-value: 1.33e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  249 PASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT-TQPAPATSPTTQPAPATSPTTQPAPATspttQP 327
Cdd:pfam03326  189 VSGADDMSEELMGPDGGLSHPAGSFFAFTDELESLIRDPEPRYQPSpTMPQQALKPGAQSSDTSGVSDTEQSAR----QT 264

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  328 APATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPT---TQPAPATSPTTQPAPATSPT 404
Cdd:pfam03326  265 ATAEPQRLQAPGFSRSTSRPARGQTAQYFLAAQQHGVVSLFPSTATLVPIAGSTGVTevvSYGHNSTSPSSTPCPSTAVT 344

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  405 TqpAPATSPTTQPAPAT----SPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPAtSPTTQPSPATNPTTQPSVS 480
Cdd:pfam03326  345 E--ADHQTEPEVPWIATahqeSDQRPIGPGPEKPTFLPPVGGKQFFQGLRDSRSTSFLTA-PEATSAISDVFQGTEVCQP 421

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  481 SSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPttQPAPATSATTQSVP 539
Cdd:pfam03326  422 KRIRALHPPGSPSANRPLPSSLAPTPTGPVHEPGSSLTPATVP--QPLDAAPVATPEAS 478
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 243-329 1.42e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 46.15  E-value: 1.42e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  243 TSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ-PAPATSPTTQPAPATSPTTQPAPAT 321
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGsLAPPPPPPPGPAGAAPGAALPVRVP 94


                   ....*...
gi 1831519558  322 SPTTQPAP 329
Cdd:NF041121    95 APPALPNP 102
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 244-352 1.44e-04

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 46.44  E-value: 1.44e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  244 STQPAPASSPTTQPAPATSPTTQPAPATSPTTQP-APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS 322
Cdd:PRK12678    60 GGGAAAAAATPAAPAAAARRAARAAAAARQAEQPaAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARR 139

                           90       100       110
                   ....*....|....*....|....*....|
gi 1831519558  323 PTTQPAPATSPTTQPAPATSPTTQPTPATS 352
Cdd:PRK12678   140 GAARKAGEGGEQPATEARADAAERTEEEER 169
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 310-437 1.45e-04

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 45.24  E-value: 1.45e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  310 ATSPTTQPAPATSPTTQPAPATSPTTQ-PAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPA 388
Cdd:PHA02682    68 ANSACMQRPSGQSPLAPSPACAAPAPAcPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACPPSTRQC 147

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1831519558  389 PATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP 437
Cdd:PHA02682   148 PPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAASPVLEP 196
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 240-360 1.45e-04

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 45.71  E-value: 1.45e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPA--PATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQP 317
Cdd:PTZ00436   229 PAKAAAPPAKAAAAPAKAAaaPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAP---PAKAAAPPAKAAAAPAKAAAA 305

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1831519558  318 aPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPA 360
Cdd:PTZ00436   306 -PAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAA 347
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 321-395 1.53e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 45.66  E-value: 1.53e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  321 TSPTTQPAPATSPTTQPAPATSPTtqPTPATSPTTQPTPATSPTTQP-TPATSPTTQPAPATSPTTQPAPATSPTT 395
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPT--PSPPASPASGMSAAPASAVEEkSPSEESATATAPESPSTSVPSSGSDAAS 148
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 276-343 1.56e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 46.09  E-value: 1.56e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  276 QPAPATSPTT------QPAPATSPTTQPAPATSPTTQPAPATSpttqPAPATSPTTQPAPATSPTTQPAPATSP 343
Cdd:PRK14954   381 APSPAGSPDVkkkapePDLPQPDRHPGPAKPEAPGARPAELPS----PASAPTPEQQPPVARSAPLPPSPQASA 450
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 266-333 1.56e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 46.09  E-value: 1.56e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  266 QPAPATSPTT------QPAPATSPTTQPAPATSPTTQPAPATSpttqPAPATSPTTQPAPATSPTTQPAPATSP 333
Cdd:PRK14954   381 APSPAGSPDVkkkapePDLPQPDRHPGPAKPEAPGARPAELPS----PASAPTPEQQPPVARSAPLPPSPQASA 450
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 242-323 1.56e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 46.09  E-value: 1.56e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  242 STSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTtqpapatsPTTQPAPATSPTTQPAPAT 321
Cdd:PRK14954   377 DGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPT--------PEQQPPVARSAPLPPSPQA 448


                   ..
gi 1831519558  322 SP 323
Cdd:PRK14954   449 SA 450
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 478-554 1.57e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 46.42  E-value: 1.57e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  478 SVSSS-----ASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVPVVTTQTTMGTSPT 552
Cdd:PRK12270    24 SVDPSwreffADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAA 103


                   ..
gi 1831519558  553 TA 554
Cdd:PRK12270   104 AA 105
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 301-380 1.60e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 45.66  E-value: 1.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  301 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSpttqpTPATSPTTQPTPATSPTTQPTPATSPTTQPAPA 380
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASA-----VEEKSPSEESATATAPESPSTSVPSSGSDAAST 149
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 320-447 1.60e-04

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 45.24  E-value: 1.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  320 ATSPTTQPAPATSPTTQPAPATSPTTQpTPATSPTTQPTPATSPTTQPT--PATSPTTQPAPATSPTTQPAPATSPTTQP 397
Cdd:PHA02682    68 ANSACMQRPSGQSPLAPSPACAAPAPA-CPACAPAAPAPAVTCPAPAPAcpPATAPTCPPPAVCPAPARPAPACPPSTRQ 146

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1831519558  398 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP 447
Cdd:PHA02682   147 CPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAASPVLEP 196
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 318-463 1.61e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 46.23  E-value: 1.61e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  318 APATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPtpatsptTQPTPATSPTTQPAPATSPTTQPAPATSPtTQP 397
Cdd:PRK10263   742 EPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQP-------QQPVAPQPQYQQPQQPVAPQPQYQQPQQP-VAP 813

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  398 APATSPTTQPAPATSPTTQPAPATSPTTQPA---PATSPTTQPAPATSPTTqPTPGTSPTTQPAPATSP 463
Cdd:PRK10263   814 QPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTllhPLLMRNGDSRPLHKPTT-PLPSLDLLTPPPSEVEP 881
PRK11901 PRK11901
hypothetical protein; Reviewed
 372-540 1.63e-04

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 45.44  E-value: 1.63e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  372 SPTTQPAPATSPTTQPAP------ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTt 445
Cdd:PRK11901    60 SPTEHESQQSSNNAGAEKnidlsgSSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAPPQTPN- 138

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  446 qptpGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTT 525
Cdd:PRK11901   139 ----GQQRIELPGNISDALSQQQGQVNAASQNAQGNTSTLPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHK 214

                          170
                   ....*....|....*
gi 1831519558  526 QPAPATSATTQSVPV 540
Cdd:PRK11901   215 TATVAVPPATSGKPK 229
PPE COG5651
PPE-repeat protein [Function unknown];
320-533 1.64e-04

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 45.65  E-value: 1.64e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  320 ATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAP 399
Cdd:COG5651    164 LTPFTQPPPTITNPGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSGPIGLNSGPGNTGFAGTGAAAGAAAA 243

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  400 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATsptTQPSPATNPTTQPSV 479
Cdd:COG5651    244 AAAAAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAAA---TGLGLGAGGAAGAAG 320

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  480 SSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSA 533
Cdd:COG5651    321 ATGAGAALGAGAAAAAAGAAAGAGAAAAAAAGGAGGGGGGALGAGGGGGSAGAA 374
KAR9 pfam08580
Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal ...
 299-554 1.69e-04

Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localizes at the shmoo tip in mating cells and at the tip of the growing bud in anaphase.


Pssm-ID: 430088 [Multi-domain]  Cd Length: 684  Bit Score: 45.98  E-value: 1.69e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  299 PATSPTTQPAPATSPTTQPAPATSPTTQpapATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPA 378
Cdd:pfam08580  434 PPSSVIMTPVNKGSKTPSSRRGSSFDFG---SSSERVINSKLRRESKLPQIASTLKQTKRPSKIPRASPNHSGFLSTPSN 510

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  379 PATSPTtqPAPATSPTTQPAPATSPTTqpaPATSPTTQPAPAtSPTTQPAPATSPTTQPAPAtspTTQPTPGTSPTTQPA 458
Cdd:pfam08580  511 TATSET--PTPALRPPSRPQPPPPGNR---PRWNASTNTNDL-DVGHNFKPLTLTTPSPTPS---RSSRSSSTLPPVSPL 581

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  459 PATSpTTQPSPATNPttqPSVSSSASTQPAPATSGTTQPAPatsATTQPAPATSATTQPAPATSPTTQPAPATSATTQSv 538
Cdd:pfam08580  582 SRDK-SRSPAPTCRS---VSRASRRRASRKPTRIGSPNSRT---SLLDEPPYPKLTLSKGLPRTPRNRQSYAGTSPSRS- 653

                          250
                   ....*....|....*.
gi 1831519558  539 PVVTTQTTMGTSPTTA 554
Cdd:pfam08580  654 VSVSSGLGPQTRPGTS 669
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 331-410 1.70e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 45.66  E-value: 1.70e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  331 TSPTTQPAPATSPTTQPTPATSPTtqPTPATSPTTQPTPATSPTTQPapaTSPTTQPAPATSPTTQPAPATSPTTQPAPA 410
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPT--PSPPASPASGMSAAPASAVEE---KSPSEESATATAPESPSTSVPSSGSDAAST 149
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 291-353 1.70e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 45.66  E-value: 1.70e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  291 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAT-----SPTTQPAPATSPTTQPTPATSP 353
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASaveekSPSEESATATAPESPSTSVPSS 142
motB PRK12799
flagellar motor protein MotB; Reviewed
 193-346 1.72e-04

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 45.86  E-value: 1.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  193 QKYGDLNTHNIGNNATDItNDINNVLNI----TATTLGPTTTTITPTTTVVPASTSTQPAPASSPTTQPAPATSPTTQPA 268
Cdd:PRK12799   267 QSQHDIEHENLDNRALDI-EKATGLKQIdthgTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASA 345

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  269 PATSPTT-QPAPATSPTTQPAPATSP-TTQPAPATSPTTQpapaTSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ 346
Cdd:PRK12799   346 VALSSAGvLPSDVTLPGTVALPAAEPvNMQPQPMSTTETQ----QSSTGNITSTANGPTTSLPAAPASNIPVSPTSRDAQ 421
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 337-419 1.73e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 45.76  E-value: 1.73e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  337 PAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQ-PAPATSPTTQPAPATSPTTQPAPATSPTT 415
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGsLAPPPPPPPGPAGAAPGAALPVRVPAPPA 98


                   ....
gi 1831519558  416 QPAP 419
Cdd:NF041121    99 LPNP 102
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 267-349 1.76e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 45.76  E-value: 1.76e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  267 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ-PAPATSPTTQPAPATSPTTQPAPATSPTT 345
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGsLAPPPPPPPGPAGAAPGAALPVRVPAPPA 98


                   ....
gi 1831519558  346 QPTP 349
Cdd:NF041121    99 LPNP 102
dnaA PRK14086
chromosomal replication initiator protein DnaA;
353-537 1.76e-04

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 45.97  E-value: 1.76e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  353 PTTQPTPATSPTTQPTPA-TSPTTQPAPATSPTTQPAPATSPTTQPAPaTSPTTQPA-PATSPTTQPAPATSPTTQPAPA 430
Cdd:PRK14086    90 PSAGEPAPPPPHARRTSEpELPRPGRRPYEGYGGPRADDRPPGLPRQD-QLPTARPAyPAYQQRPEPGAWPRAADDYGWQ 168

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  431 TSPT--TQPAPATSPTtQPTPGTSPTTQPAPATSPTTQPspatnPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPA 508
Cdd:PRK14086   169 QQRLgfPPRAPYASPA-SYAPEQERDREPYDAGRPEYDQ-----RRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGG 242

                          170       180
                   ....*....|....*....|....*....
gi 1831519558  509 PATSAttQPAPATSPTTQPAPATSATTQS 537
Cdd:PRK14086   243 PGPPE--RDDAPVVPIRPSAPGPLAAQPA 269
motB PRK12799
flagellar motor protein MotB; Reviewed
 441-554 1.78e-04

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 45.48  E-value: 1.78e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  441 TSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTtqPSVSSSASTQPAPATSgttqpapATSATTQPAPATSATTQPAPA 520
Cdd:PRK12799   298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPS--SVTTQSATTTQASAVA-------LSSAGVLPSDVTLPGTVALPA 368

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1831519558  521 TSPTTQPAPATSATTQSVPVVTTQTTMGTSPTTA 554
Cdd:PRK12799   369 AEPVNMQPQPMSTTETQQSSTGNITSTANGPTTS 402
PPE COG5651
PPE-repeat protein [Function unknown];
330-554 1.79e-04

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 45.65  E-value: 1.79e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  330 ATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAP 409
Cdd:COG5651    164 LTPFTQPPPTITNPGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSGPIGLNSGPGNTGFAGTGAAAGAAAA 243

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  410 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATnptTQPSVSSSASTQPAP 489
Cdd:COG5651    244 AAAAAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAAA---TGLGLGAGGAAGAAG 320

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  490 ATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVPVVTTQTTMGTSPTTA 554
Cdd:COG5651    321 ATGAGAALGAGAAAAAAGAAAGAGAAAAAAAGGAGGGGGGALGAGGGGGSAGAAAGAASGGGAAA 385
DUF4106 pfam13388
Protein of unknown function (DUF4106); This family of proteins are found in large numbers in ...
 299-396 1.80e-04

Protein of unknown function (DUF4106); This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown.


Pssm-ID: 404296  Cd Length: 431  Bit Score: 45.66  E-value: 1.80e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  299 PATSPTTQPAPATSPTTQPAPATSPTTQPAPatsptTQPAPATSPTTQpTPATSPTTQPTpATSPTTQPTPATSPTtqPA 378
Cdd:pfam13388  173 PPNPPREAPAPGLPKTFTSSHGHRHRHAPKP-----TVQNPAQQPTVQ-NPAQQPTQQPT-VQNPAQQQNPAQQPP--PQ 243

                           90
                   ....*....|....*...
gi 1831519558  379 PATSPTTQPAPATSPTTQ 396
Cdd:pfam13388  244 PAQQPTVQNPAQQQPQTE 261
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 241-310 1.80e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 45.66  E-value: 1.80e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  241 ASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPapaTSPTTQPAPATSPTTQPAPATSPTTQPAPA 310
Cdd:TIGR00601   83 KVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEE---KSPSEESATATAPESPSTSVPSSGSDAAST 149
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 401-482 1.84e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 45.66  E-value: 1.84e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  401 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAtSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVS 480
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPA-SAVEEKSPSEESATATAPESPSTSVPSSGSDAASTLVVG 153


                   ..
gi 1831519558  481 SS 482
Cdd:TIGR00601  154 SE 155
motB PRK05996
MotB family protein;
356-438 1.85e-04

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 45.46  E-value: 1.85e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  356 QPTPATSPTTQPTPATSPTTqpAPATSPTTQPAPATSPTTQPAPAT-SPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 434
Cdd:PRK05996   197 DLLPPGQAREQAQGAKSATA--APATVPQAAPLPQAQPKKAATEEElIADAKKAATGEPAANAAKAAKPEPMPDDQQKEA 274


                   ....
gi 1831519558  435 TQPA 438
Cdd:PRK05996   275 EQLQ 278
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
382-552 1.86e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 45.72  E-value: 1.86e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  382 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATsPTTQPAPATSPTTQPAPATSPTTQPTPgtSPTTQPAPAT 461
Cdd:PRK14948   362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAA-TTPSPPPAKASPPIPVPAEPTEPSPTP--PANAANAPPS 438

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  462 S---------------PTTQ------------------------------------------------------PSPATN 472
Cdd:PRK14948   439 LnleelwqqilaklelPSTRmllsqqaelvsldsnraviavspnwlgmvqsrkplleqafakvlgrsiklnlesQSGSAS 518

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  473 PTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATtqpaPATSPTTQPAPATSATTQSVPVVTTQTTMGTSPT 552
Cdd:PRK14948   519 NTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTAT----QASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSP 594
motB PRK05996
MotB family protein;
366-448 1.90e-04

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 45.46  E-value: 1.90e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  366 QPTPATSPTTQPAPATSPTTqpAPATSPTTQPAPATSPTTQPAPAT-SPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 444
Cdd:PRK05996   197 DLLPPGQAREQAQGAKSATA--APATVPQAAPLPQAQPKKAATEEElIADAKKAATGEPAANAAKAAKPEPMPDDQQKEA 274


                   ....
gi 1831519558  445 TQPT 448
Cdd:PRK05996   275 EQLQ 278
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 290-431 1.94e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 45.83  E-value: 1.94e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  290 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATS-PTTQPAPAtsptTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPT 368
Cdd:PRK14959   360 AMLPRLMPVESLRPSGGGASAPSGSAAEGPASGgAATIPTPG----TQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVP 435

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831519558  369 PATSPTTQPAPATSPttQPAPATsPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAT 431
Cdd:PRK14959   436 WDDAPPAPPRSGIPP--RPAPRM-PEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPRT 495
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 292-432 1.97e-04

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 45.67  E-value: 1.97e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  292 SPTTQPAPATSPTTQPAPATSPTTQPAP------------ATSP--------------TTQPAPATSPTTQPAPATSPTT 345
Cdd:PRK12678     2 APSDAAATATTDTAPRARGGGLAGMKLPelralakqlgikGTSGmrkgeliaaikearGGGAAAAAATPAAPAAAARRAA 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  346 QPTPATSPTTQP-TPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 424
Cdd:PRK12678    82 RAAAAARQAEQPaAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAA 161


                   ....*...
gi 1831519558  425 TQPAPATS 432
Cdd:PRK12678   162 ERTEEEER 169
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 241-320 2.05e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 45.27  E-value: 2.05e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  241 ASTSTQPAPASSPTTQPAPAtspttqPAPATSPTTQPAPATSPTTQPapaTSPTTQPAPATSPTTQPAPATSPTTQPAPA 320
Cdd:TIGR00601   79 TGTGKVAPPAATPTSAPTPT------PSPPASPASGMSAAPASAVEE---KSPSEESATATAPESPSTSVPSSGSDAAST 149
motB PRK12799
flagellar motor protein MotB; Reviewed
 242-366 2.06e-04

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 45.48  E-value: 2.06e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  242 STSTQPAPASSPTTQ-PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT-QPAPATSPTTQPAPATSP-TTQPA 318
Cdd:PRK12799   298 TVPVAAVTPSSAVTQsSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGvLPSDVTLPGTVALPAAEPvNMQPQ 377

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1831519558  319 PATSPTTQpapaTSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQ 366
Cdd:PRK12799   378 PMSTTETQ----QSSTGNITSTANGPTTSLPAAPASNIPVSPTSRDAQ 421
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 305-390 2.12e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 45.38  E-value: 2.12e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  305 TQPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTqPTPATSPTTQPAPATSPT 384
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPV 91


                   ....*.
gi 1831519558  385 TQPAPA 390
Cdd:NF041121    92 RVPAPP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 385-470 2.12e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 45.38  E-value: 2.12e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  385 TQPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPTPGTSPTTQPAPATSPT 464
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPV 91


                   ....*.
gi 1831519558  465 TQPSPA 470
Cdd:NF041121    92 RVPAPP 97
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 257-339 2.12e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 45.38  E-value: 2.12e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  257 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ-PAPATSPTTQPAPATSPTTQPAPATSPTT 335
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGsLAPPPPPPPGPAGAAPGAALPVRVPAPPA 98


                   ....
gi 1831519558  336 QPAP 339
Cdd:NF041121    99 LPNP 102
PPE COG5651
PPE-repeat protein [Function unknown];
310-533 2.14e-04

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 45.27  E-value: 2.14e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  310 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAP 389
Cdd:COG5651    164 LTPFTQPPPTITNPGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSGPIGLNSGPGNTGFAGTGAAAGAAAA 243

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  390 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTsptTQPAPATSPTTQPSP 469
Cdd:COG5651    244 AAAAAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAAA---TGLGLGAGGAAGAAG 320

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  470 ATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSA 533
Cdd:COG5651    321 ATGAGAALGAGAAAAAAGAAAGAGAAAAAAAGGAGGGGGGALGAGGGGGSAGAAAGAASGGGAA 384
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 410-539 2.15e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 45.83  E-value: 2.15e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  410 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATS-PTTQPTPGTSPTTQPAPATSPTtqPSPATNPTTQPSVSSSAS---- 484
Cdd:PRK14959   360 AMLPRLMPVESLRPSGGGASAPSGSAAEGPASGgAATIPTPGTQGPQGTAPAAGMT--PSSAAPATPAPSAAPSPRvpwd 437

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  485 -TQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVP 539
Cdd:PRK14959   438 dAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGP 493
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 245-330 2.20e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 45.38  E-value: 2.20e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  245 TQPAPASSPTTQPAPATSPttQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPT 324
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPV 91


                   ....*.
gi 1831519558  325 TQPAPA 330
Cdd:NF041121    92 RVPAPP 97
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 392-485 2.22e-04

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 45.85  E-value: 2.22e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  392 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT--QPAPATSPTTQPAPATSPTTQPTpGTSPTTQPAPATSPTTQPSP 469
Cdd:PLN02217   568 STNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAghLGSPPATPSKIVSPSTSPPASHL-GSPSTTPSSPESSIKVASTE 646

                           90
                   ....*....|....*.
gi 1831519558  470 ATNPTTQPSVSSSAST 485
Cdd:PLN02217   647 TASPESSIKVASTESS 662
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 359-479 2.26e-04

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 44.85  E-value: 2.26e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  359 PATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPA--PATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ 436
Cdd:PHA02682    76 PSGQSPLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPAcpPATAPTCPPPAVCPAPARPAPACPPSTRQCPPAPPLPT 155

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1831519558  437 PAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSV 479
Cdd:PHA02682   156 PKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAASPVLEPRI 198
PPE COG5651
PPE-repeat protein [Function unknown];
340-555 2.32e-04

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 45.27  E-value: 2.32e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  340 ATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAP 419
Cdd:COG5651    164 LTPFTQPPPTITNPGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSGPIGLNSGPGNTGFAGTGAAAGAAAA 243

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  420 ATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQpsvSSSASTQPAPATSGTTQPAP 499
Cdd:COG5651    244 AAAAAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLAGGGA---GAAAATGLGLGAGGAAGAAG 320

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  500 ATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVPVVTTQTTMGTSPTTAG 555
Cdd:COG5651    321 ATGAGAALGAGAAAAAAGAAAGAGAAAAAAAGGAGGGGGGALGAGGGGGSAGAAAG 376
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 280-421 2.38e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 45.44  E-value: 2.38e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  280 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTTQPAPATSPTtqpaPATSPTTQPTPATSPTTQPT 358
Cdd:PRK14959   360 AMLPRLMPVESLRPSGGGASAPSGSAAEGPASGgAATIPTPGTQGPQGTAPAAGMT----PSSAAPATPAPSAAPSPRVP 435

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831519558  359 PATSPTTQPTPATSPttQPAPATsPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAT 421
Cdd:PRK14959   436 WDDAPPAPPRSGIPP--RPAPRM-PEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPRT 495
PHA03325 PHA03325
nuclear-egress-membrane-like protein; Provisional
 300-469 2.44e-04

nuclear-egress-membrane-like protein; Provisional


Pssm-ID: 223044  Cd Length: 418  Bit Score: 45.26  E-value: 2.44e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  300 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqpAPATSPTTQPTPATSPTTQPTPAT-SPTTQPTPATSPTTQPA 378
Cdd:PHA03325   259 SSAFMLNSSLPTSAPKRRSRRAGAMRAAAGETADLA--DDDGSEHSDPEPLPASLPPPPVRRpRVKHPEAGKEEPDGARN 336

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  379 PATSPTTQPAPATSPTTQPAPATSPTTQpapaTSPTTQPAPATSPTTQPAPATspttqPAPATSPTTQPTPGTSPTTQPA 458
Cdd:PHA03325   337 AEAKEPAQPATSTSSKGSSSAQNKDSGS----TGPGSSLAAASSFLEDDDFGS-----PPLDLTTSLRHMPSPSVTSAPE 407

                          170
                   ....*....|.
gi 1831519558  459 PATSPTTQPSP 469
Cdd:PHA03325   408 PPSIPLTYLSD 418
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 240-327 2.44e-04

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 45.47  E-value: 2.44e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTT--QPAPATSPTTQPAPATSPttqpaPATSPTTQPAPATSPTTQP 317
Cdd:PLN02217   566 PGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAghLGSPPATPSKIVSPSTSP-----PASHLGSPSTTPSSPESSI 640

                           90
                   ....*....|
gi 1831519558  318 APATSPTTQP 327
Cdd:PLN02217   641 KVASTETASP 650
motB PRK05996
MotB family protein;
266-348 2.46e-04

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 45.07  E-value: 2.46e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  266 QPAPATSPTTQPAPATSPTTqpAPATSPTTQPAPATSPTTQPAPAT-SPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 344
Cdd:PRK05996   197 DLLPPGQAREQAQGAKSATA--APATVPQAAPLPQAQPKKAATEEElIADAKKAATGEPAANAAKAAKPEPMPDDQQKEA 274


                   ....
gi 1831519558  345 TQPT 348
Cdd:PRK05996   275 EQLQ 278
Hamartin pfam04388
Hamartin protein; This family includes the hamartin protein which is thought to function as a ...
 410-553 2.47e-04

Hamartin protein; This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein pfam03542. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterized by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation either TSC1 or TSC2 tumour suppressor gene. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin pfam03542. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking.


Pssm-ID: 461287 [Multi-domain]  Cd Length: 730  Bit Score: 45.43  E-value: 2.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  410 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSV----SSSAST 485
Cdd:pfam04388  278 ASPYTDQQSSYGSSTSTPSSTPRLQLSSSSGTSPPYLSPPSIRLKTDSFPLWSPSSVCGMTTPPTSPGMVpttpSELSPS 357

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  486 QPAPATSGTTQPAPATSATTQPAPATS--ATTQPAPATSPTTQPAPATSATTQSVPVVTTQTTMGTSPTT 553
Cdd:pfam04388  358 SSHLSSRGSSPPEAAGEATPETTPAKDspYLKQPPPLSDSHVHRALPASSQPSSPPRKDGRSQSSFPPLS 427
FhaB COG3210
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
 202-1058 2.53e-04

Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442443 [Multi-domain]  Cd Length: 1698  Bit Score: 45.91  E-value: 2.53e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  202 NIGNNATDITNDINNVLNITATTLGPTTTTITPTTTVVPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPAT 281
Cdd:COG3210    806 AAGTTAINVTGSGGTITINTATTGLTGTGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGSGGVA 885

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  282 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPAT 361
Cdd:COG3210    886 TSTGTANAGTLTNLGTTTNAASGNGAVLATVTATGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLSAASASDGAGD 965

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  362 SPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAT 441
Cdd:COG3210    966 TGASSAAGSSAVGTSANSAGSTGGVIAATGILVAGNSGTTASTTGGSGAIVAGGNGVTGTTGTASATGTGTAATAGGQNG 1045

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  442 SPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPAT 521
Cdd:COG3210   1046 VGVNASGISGGNAAALTASGTAGTTGGTAASNGGGGTAQASGAGTTHTLGGITNGGATGTSGGTTTSTGGVTASKVGGTT 1125

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  522 SPTTQPAPATSATTQSVPVVTTQTTMGTSPTTAGISSSPAATSPSTAVTSPSSLGTSSSPLPSSISTSALPIASSSASSS 601
Cdd:COG3210   1126 TVGATGTSTASTEAAGAGTLTGLVAVSAVAGGASSASAGDTTAVAAATTTTTGSAINGGADSAATEGTAGTDLKGGDSTG 1205

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  602 PSAASSTTPVVLSSSTIQSSSGTFPSSVASSPSTVGSTSGAASSSSYATVSTIAGSTGSTITPVPGSSSTIGSSTPSASS 681
Cdd:COG3210   1206 GSTTTIGTTNVTTTTTLTASDTGNTTATGGSSAGQTGSFVAAGSASGTGDATTGATAGAVSNGATSTVAGNAGATATGST 1285

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  682 SSSGTMSTISGSTGSTVTVVPGSSSTFASSTPIASSSSPGSTVTVAPGSSSTYGSSTPSASSSSSGTMSTNSGSTGSTVT 761
Cdd:COG3210   1286 VDIGSTSATSAGGSLDTTGNTAGANGATVGTGIGGTTATGTAVAAVNSGGVNAGGGTINTTAANTGLNGGNGATDSAAGA 1365

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  762 VAPVSSSTFGSSTPIASSSSSGSTVTVVSGSSSTYGSSTPSASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASP 841
Cdd:COG3210   1366 GSGGAAGSLAATAGAGTVLTGAGNNTGAEGTNAGRDGGVTTSGTGVGNNGGVSGTTVAGTTGSSATTGTGGTGNTTGTSV 1445

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  842 SSPGTMSTVSGPTGSTVTVVPGSSTSPAPSSSPNPSSSPASTGSTITISGSSSIIVSTVSGSTVSGSTGTSQSTLASSTA 921
Cdd:COG3210   1446 AGAGGGNADASAINTGNASSLGAGGSTAGNAVGGAVIGGTTTGGNGAGVAGATASNGGTSTGAGGTAGGTTAEVAKASLE 1525

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  922 TPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGSTASSPTGSTGSTFSVATE 1001
Cdd:COG3210   1526 GGEGTYGGSSVAEAGTGGGILGAVSGAGSEGGAAGGVTGSVGVGGTDGAGGDTGGADDTGAQAPTAGNTATLTLSLAEGT 1605

                          810       820       830       840       850
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558 1002 VTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQSTLTT 1058
Cdd:COG3210   1606 NAEYGGTTNVTSGTAGNAGATGANSNTVVTTNGGEGVLALVAGGNTTNGTTLSGAVN 1662
GGN pfam15685
Gametogenetin; GGN is a family of proteins largely found in mammals. It reacts with POG in the ...
 272-434 2.56e-04

Gametogenetin; GGN is a family of proteins largely found in mammals. It reacts with POG in the maturation of sperm and is expressed virtually only in the testis. It is found to be associated with the intracellular membrane, binds with GGNBP1 and may be involved in vesicular trafficking.


Pssm-ID: 434857 [Multi-domain]  Cd Length: 668  Bit Score: 45.53  E-value: 2.56e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  272 SPTTQPAPATSPTTQPAPatsPTTQPAPATSPTtQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPAT 351
Cdd:pfam15685  378 APRRRAAALSGPWGSPPP---PPGKAHPIPGPR-RPAPALLAPPMFIFPAPTNGEPVRPGPPAPQALLPRPPPPTPPATP 453

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  352 SPTTQPTPaTSPTTQPTP---ATSPTTQPAPATSPTT---QPAPATSPTTQPAPATSPTTQPAPATSPTtqPAPATSPTT 425
Cdd:pfam15685  454 PPVPPPIP-QLPALQPMPlaaARPPTPRPCPGHGESAlapAPTAPLPPALAADQAPAPALAAAPAPSPA--PAPATADPL 530


                   ....*....
gi 1831519558  426 QPAPATSPT 434
Cdd:pfam15685  531 PPAPAPIKA 539
PRK10905 PRK10905
cell division protein DamX; Validated
 298-505 2.58e-04

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 44.93  E-value: 2.58e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  298 APATSPTTQPAPATSPTTQPAPAT--SPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQ-----PTPA 370
Cdd:PRK10905    22 APSTSSSDQTASGEKSIDLAGNATdqANGVQPAPGTTSAEQTAGNTQQDVSLPPISSTPTQGQTPVATDGQqrvevQGDL 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  371 TSPTTQPAPATSPTTQPAPATSPTTqpaPAT-SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTP 449
Cdd:PRK10905   102 NNALTQPQNQQQLNNVAVNSTLPTE---PATvAPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKP 178

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  450 GTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATT 505
Cdd:PRK10905   179 VAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTA 234
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 339-464 2.60e-04

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 44.76  E-value: 2.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  339 PATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQP-APATSPTTQPAPATSPTTQPAPATSPTTQP 417
Cdd:NF040712   195 PLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLAsARRRRAGVEQPEDEPVGPGAAPAAEPDEAT 274

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1831519558  418 APAT-SPTTQPAPATSPTTQPAPATSPTTQPT-PGTSPTTQPAPATSPT 464
Cdd:NF040712   275 RDAGePPAPGAAETPEAAEPPAPAPAAPAAPAaPEAEEPARPEPPPAPK 323
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 282-422 2.74e-04

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 45.28  E-value: 2.74e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  282 SPTTQPAPATSPTTQPAPATSPTTQPAP------------ATSP--------------TTQPAPATSPTTQPAPATSPTT 335
Cdd:PRK12678     2 APSDAAATATTDTAPRARGGGLAGMKLPelralakqlgikGTSGmrkgeliaaikearGGGAAAAAATPAAPAAAARRAA 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  336 QPAPATSPTTQP-TPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 414
Cdd:PRK12678    82 RAAAAARQAEQPaAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAA 161


                   ....*...
gi 1831519558  415 TQPAPATS 422
Cdd:PRK12678   162 ERTEEEER 169
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 285-370 2.77e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.99  E-value: 2.77e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  285 TQPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPTPATSPTTQPTPATSPT 364
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPV 91


                   ....*.
gi 1831519558  365 TQPTPA 370
Cdd:NF041121    92 RVPAPP 97
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 306-383 2.79e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 45.32  E-value: 2.79e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  306 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTtqptpatsPTTQPTPATSPTTQPAPATSP 383
Cdd:PRK14954   381 APSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPT--------PEQQPPVARSAPLPPSPQASA 450
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 375-460 2.79e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.99  E-value: 2.79e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  375 TQPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPTPGTSPT 454
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPV 91


                   ....*.
gi 1831519558  455 TQPAPA 460
Cdd:NF041121    92 RVPAPP 97
PRK11633 PRK11633
cell division protein DedD; Provisional
 436-531 2.80e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 43.84  E-value: 2.80e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  436 QPAPATSPTTQPTPgtsptTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATT 515
Cdd:PRK11633    51 DEPDMMPAATQALP-----TQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKV 125

                           90
                   ....*....|....*.
gi 1831519558  516 QPAPATSPTTQPAPAT 531
Cdd:PRK11633   126 EAPPAPKPEPKPVVEE 141
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 365-502 2.83e-04

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 44.76  E-value: 2.83e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  365 TQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAPATSPT 444
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLA-SARRRRAGVEQPEDEPVGPGAAPAAEPD 271

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  445 TQPTPgtsPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATS 502
Cdd:NF040712   272 EATRD---AGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKPKR 326
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 339-457 2.85e-04

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 44.47  E-value: 2.85e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  339 PATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPA--PATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ 416
Cdd:PHA02682    76 PSGQSPLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPAcpPATAPTCPPPAVCPAPARPAPACPPSTRQCPPAPPLPT 155

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1831519558  417 PAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQP 457
Cdd:PHA02682   156 PKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAASPVLEP 196
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 366-433 2.86e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 45.32  E-value: 2.86e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  366 QPTPATSPTT------QPAPATSPTTQPAPATSPTTQPAPATSpttqPAPATSPTTQPAPATSPTTQPAPATSP 433
Cdd:PRK14954   381 APSPAGSPDVkkkapePDLPQPDRHPGPAKPEAPGARPAELPS----PASAPTPEQQPPVARSAPLPPSPQASA 450
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
253-393 2.90e-04

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 44.79  E-value: 2.90e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  253 PTTQPAPATSPTTQpAPATSPTT----QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT-TQPAPATSPttQP 327
Cdd:PRK12373   175 PVVKPGPQIGRYAS-EPAGGLTSlteeAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAApVPPSEAARP--KS 251

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  328 APATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSP 393
Cdd:PRK12373   252 ADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIA 317
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
430-546 2.93e-04

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 45.23  E-value: 2.93e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  430 ATSPTTQPAPATSPTTQPTPGTS-PTTQPAPATSPTTQPSPATnpttqpsvsssaSTQPAPATSGTTQPAPATSATTQPA 508
Cdd:PRK11907    17 LLTASNPKLAQAEEIVTTTPATStEAEQTTPVESDATEEADNT------------ETPVAATTAAEAPSSSETAETSDPT 84

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1831519558  509 P-ATSATTQPAPATspttqPAPATSATT----QSVPVVTTQTT 546
Cdd:PRK11907    85 SeATDTTTSEARTV-----TPAATETSKpvegQTVDVRILSTT 122
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
241-396 2.97e-04

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 45.04  E-value: 2.97e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  241 ASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP--A 318
Cdd:pfam05539  171 AVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSPqhP 250

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  319 PATSPTTQPAPATSPTTQPAPATSPTTQP--TPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQ 396
Cdd:pfam05539  251 PSTTSQDQSTTGDGQEHTQRRKTPPATSNrrSPHSTATPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPTTQ 330
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 299-372 3.06e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 44.89  E-value: 3.06e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  299 PATSPTTQPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATS 372
Cdd:TIGR00601   77 PKTGTGKVAPPAATPTSAPTPTPSP--PASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGSDAAS 148
GGN pfam15685
Gametogenetin; GGN is a family of proteins largely found in mammals. It reacts with POG in the ...
 262-424 3.14e-04

Gametogenetin; GGN is a family of proteins largely found in mammals. It reacts with POG in the maturation of sperm and is expressed virtually only in the testis. It is found to be associated with the intracellular membrane, binds with GGNBP1 and may be involved in vesicular trafficking.


Pssm-ID: 434857 [Multi-domain]  Cd Length: 668  Bit Score: 45.14  E-value: 3.14e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  262 SPTTQPAPATSPTTQPAPatsPTTQPAPATSPTtQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAT 341
Cdd:pfam15685  378 APRRRAAALSGPWGSPPP---PPGKAHPIPGPR-RPAPALLAPPMFIFPAPTNGEPVRPGPPAPQALLPRPPPPTPPATP 453

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  342 SPTTQPTPaTSPTTQPTP---ATSPTTQPTPATSPTT---QPAPATSPTTQPAPATSPTTQPAPATSPTtqPAPATSPTT 415
Cdd:pfam15685  454 PPVPPPIP-QLPALQPMPlaaARPPTPRPCPGHGESAlapAPTAPLPPALAADQAPAPALAAAPAPSPA--PAPATADPL 530


                   ....*....
gi 1831519558  416 QPAPATSPT 424
Cdd:pfam15685  531 PPAPAPIKA 539
motB PRK05996
MotB family protein;
256-338 3.16e-04

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 44.69  E-value: 3.16e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  256 QPAPATSPTTQPAPATSPTTqpAPATSPTTQPAPATSPTTQPAPAT-SPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 334
Cdd:PRK05996   197 DLLPPGQAREQAQGAKSATA--APATVPQAAPLPQAQPKKAATEEElIADAKKAATGEPAANAAKAAKPEPMPDDQQKEA 274


                   ....
gi 1831519558  335 TQPA 338
Cdd:PRK05996   275 EQLQ 278
PRK11633 PRK11633
cell division protein DedD; Provisional
 396-503 3.18e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 43.84  E-value: 3.18e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  396 QPAPATSPTTQPAPatsptTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPatSPTTQPSPAtnPTT 475
Cdd:PRK11633    51 DEPDMMPAATQALP-----TQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKP--KPVEKPKPK--PKP 121

                           90       100
                   ....*....|....*....|....*...
gi 1831519558  476 QPSVSSSASTQPAPATSGTTQPAPATSA 503
Cdd:PRK11633   122 QQKVEAPPAPKPEPKPVVEEKAAPTGKA 149
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 286-353 3.19e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 44.93  E-value: 3.19e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  286 QPAPATSPTT------QPAPATSPTTQPAPATSPTTQPAPATSpttqPAPATSPTTQPAPATSPTTQPTPATSP 353
Cdd:PRK14954   381 APSPAGSPDVkkkapePDLPQPDRHPGPAKPEAPGARPAELPS----PASAPTPEQQPPVARSAPLPPSPQASA 450
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 429-503 3.20e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 44.89  E-value: 3.20e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  429 PATSPTTQPAPATSPTTQPTPGTSPttQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSA 503
Cdd:TIGR00601   77 PKTGTGKVAPPAATPTSAPTPTPSP--PASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGSDAAST 149
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 366-554 3.24e-04

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 44.92  E-value: 3.24e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  366 QPTPATSPTTQPAPA-TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 444
Cdd:PLN03209   328 VPPKESDAADGPKPVpTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIPTPPSSSPASSKSVDAVAKP 407

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  445 TQPTPGTSPTTqpaPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPT 524
Cdd:PLN03209   408 AEPDVVPSPGS---ASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAAT 484

                          170       180       190
                   ....*....|....*....|....*....|.
gi 1831519558  525 TQPAPATSATTQSVP-VVTTQTTMGTSPTTA 554
Cdd:PLN03209   485 DAAAPPPANMRPLSPyAVYDDLKPPTSPSPA 515
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 311-385 3.37e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 44.50  E-value: 3.37e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  311 TSPTTQPAPATSPTTQPAPATSPTTQPAPatSPTTQPTPATSPTTQP-TPATSPTTQPTPATSPTTQPAPATSPTT 385
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPA--SPASGMSAAPASAVEEkSPSEESATATAPESPSTSVPSSGSDAAS 148
PHA03369 PHA03369
capsid maturational protease; Provisional
 265-546 3.40e-04

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 44.99  E-value: 3.40e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  265 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATspttqpaPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 344
Cdd:PHA03369   350 TASLTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQR-------PDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNPQ 422

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  345 TQPTPATSPTTQPTPATSPTTQPTPAT----SPTTQPAPATSPTTQPA-----PATSPTTQPAPATSPTTQPAPATSPTT 415
Cdd:PHA03369   423 SPGTSYGPEPVGPVPPQPTNPYVMPISmanmVYPGHPQEHGHERKRKRggelkEELIETLKLVKKLKEEQESLAKELEAT 502

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  416 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPtPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTT 495
Cdd:PHA03369   503 AHKSEIKKIAESEFKNAGAKTAAANIEPNCSA-DAAAPATKRARPETKTELEAVVRFPYQIRNMESPAFVHSFTSTTLAA 581

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  496 QPAPATSATTQPAPA-----TSATTQPAPATSPtTQPAPATSATTQSVPVVTTQTT 546
Cdd:PHA03369   582 AAGQGSDTAEALAGAietllTQASAQPAGLSLP-APAVPVNASTPASTPPPLAPQE 636
PRK10118 PRK10118
flagellar hook length control protein FliK;
334-526 3.40e-04

flagellar hook length control protein FliK;


Pssm-ID: 236652 [Multi-domain]  Cd Length: 408  Bit Score: 44.86  E-value: 3.40e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  334 TTQPAPATSPTTQPTPATSPTTQPTPATSpTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSP 413
Cdd:PRK10118    87 ANLLIPVDETLPVITDEQSLSSPLTPALK-TSALAALSKNAQKDEKADDLSDEDLASLSALFAMLPGQDNTT-PVADAPS 164

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  414 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPT-TQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATS 492
Cdd:PRK10118   165 TVLPAEKPTLLTKDMPSAPQDETHTLSSDEHEKGLTSAQLTtAQPDDAPGTPAQPLTPLAAEAQAKAEVISTPSPVTAAA 244

                          170       180       190
                   ....*....|....*....|....*....|....
gi 1831519558  493 GTTqpapATSATTQPAPATSATTQPAPATSPTTQ 526
Cdd:PRK10118   245 SPT----ITPHQTQPLPTAAAPVLSAPLGSHEWQ 274
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 379-455 3.43e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 44.50  E-value: 3.43e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  379 PATSPTTQPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPTTQPapaTSPTTQPAPATSPTTQPTPGTSPTT 455
Cdd:TIGR00601   77 PKTGTGKVAPPAATPTSAPTPTPSP--PASPASGMSAAPASAVEEKSPS---EESATATAPESPSTSVPSSGSDAAS 148
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 296-363 3.45e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 44.93  E-value: 3.45e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  296 QPAPATSPTT------QPAPATSPTTQPAPATSPTTQPAPATSpttqPAPATSPTTQPTPATSPTTQPTPATSP 363
Cdd:PRK14954   381 APSPAGSPDVkkkapePDLPQPDRHPGPAKPEAPGARPAELPS----PASAPTPEQQPPVARSAPLPPSPQASA 450
motB PRK05996
MotB family protein;
346-428 3.47e-04

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 44.69  E-value: 3.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  346 QPTPATSPTTQPTPATSPTTQPtpATSPTTQPAPATSPTTQPAPAT-SPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 424
Cdd:PRK05996   197 DLLPPGQAREQAQGAKSATAAP--ATVPQAAPLPQAQPKKAATEEElIADAKKAATGEPAANAAKAAKPEPMPDDQQKEA 274


                   ....
gi 1831519558  425 TQPA 428
Cdd:PRK05996   275 EQLQ 278
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 266-378 3.60e-04

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 44.89  E-value: 3.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  266 QPAPATSPTTQPAPATSPTTQPAPATSPTTQP-APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPt 344
Cdd:PRK12678    62 GAAAAAATPAAPAAAARRAARAAAAARQAEQPaAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRG- 140

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1831519558  345 TQPTPATSPTTQPTPATSPTTQPTPATSPTTQPA 378
Cdd:PRK12678   141 AARKAGEGGEQPATEARADAAERTEEEERDERRR 174
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 405-537 3.71e-04

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 44.37  E-value: 3.71e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  405 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSAS 484
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDE 272

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  485 TQPAPATSGTTQPAPATSATTQPAPATSATTQPA-PATSPTTQPAPATSATTQS 537
Cdd:NF040712   273 ATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAaPEAEEPARPEPPPAPKPKR 326
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
261-416 3.85e-04

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 44.65  E-value: 3.85e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  261 TSPTTQPAPATSPT--TQPAPATSPTTQPAPATSPTTQPAPATSPTTQpaPATSPTTQPAPATSPTTQPAPATSPttQPA 338
Cdd:pfam05539  175 SKTTSWPTEVSHPTypSQVTPQSQPATQGHQTATANQRLSSTEPVGTQ--GTTTSSNPEPQTEPPPSQRGPSGSP--QHP 250

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  339 PATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSP--TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ 416
Cdd:pfam05539  251 PSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTATPPPTTKRqeTGRPTPRPTATTQSGSSPPHSSPPGVQANPTTQ 330
PBP1 COG5180
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ...
 240-527 3.86e-04

PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];


Pssm-ID: 444064 [Multi-domain]  Cd Length: 548  Bit Score: 44.67  E-value: 3.86e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQPA-----PATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPaPATSPT 314
Cdd:COG5180    239 TSEARSRPATVDAQPEMRPPADAKERRRAaigdtPAAEPPGLPVLEAGSEPQSDAPEAETARPIDVKGVASAP-PATRPV 317

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  315 TQPAPATSPTTQ--PAPATSPTTQPAPATS----PTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPA 388
Cdd:COG5180    318 RPPGGARDPGTPrpGQPTERPAGVPEAASDagqpPSAYPPAEEAVPGKPLEQGAPRPGSSGGDGAPFQPPNGAPQPGLGR 397

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  389 PATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPS 468
Cdd:COG5180    398 RGAPGPPMGAGDLVQAALDGGGRETASLGGAAGGAGQGPKADFVPGDAESVSGPAGLADQAGAAASTAMADFVAPVTDAT 477

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  469 PATNPTT--------QPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSattQPAPATSPTTQP 527
Cdd:COG5180    478 PVDVADVlgvrpdaiLGGNVAPASGLDAETRIIEAEGAPATEDFVAAELSEL---REAAEEKTGDAI 541
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 244-383 3.94e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 45.08  E-value: 3.94e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  244 STQPAPASSPTTQPAPATSPTTQPAPATSPTTQPapatsptTQPAPATSPTTQPAPATSPTTQPAPATSPtTQPAPATSP 323
Cdd:PRK10263   748 IVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQP-------QQPVAPQPQYQQPQQPVAPQPQYQQPQQP-VAPQPQYQQ 819

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831519558  324 TTQPAPATSPTTQPAPATSPTTQPT---PATSPTTQPTPATSPTTqPTPATSPTTQPAPATSP 383
Cdd:PRK10263   820 PQQPVAPQPQYQQPQQPVAPQPQDTllhPLLMRNGDSRPLHKPTT-PLPSLDLLTPPPSEVEP 881
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 364-438 4.02e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 44.73  E-value: 4.02e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  364 TTQPTPATSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA 438
Cdd:PRK14965   381 APAPPSAAWGAPTPAAPAAP---PPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGDRWRA 452
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 398-452 4.05e-04

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 44.71  E-value: 4.05e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  398 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA--PATSPTTQPTPGTS 452
Cdd:PRK06975   266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPnpPATPPEPPARRGRG 322
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 272-412 4.05e-04

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 44.89  E-value: 4.05e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  272 SPTTQPAPATSPTTQPAPATSPTTQPAP------------ATSP--------------TTQPAPATSPTTQPAPATSPTT 325
Cdd:PRK12678     2 APSDAAATATTDTAPRARGGGLAGMKLPelralakqlgikGTSGmrkgeliaaikearGGGAAAAAATPAAPAAAARRAA 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  326 QPAPATSPTTQP-APATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 404
Cdd:PRK12678    82 RAAAAARQAEQPaAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAA 161


                   ....*...
gi 1831519558  405 TQPAPATS 412
Cdd:PRK12678   162 ERTEEEER 169
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 260-391 4.10e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 44.67  E-value: 4.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  260 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA 338
Cdd:PRK14959   360 AMLPRLMPVESLRPSGGGASAPSGSAAEGPASGgAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDA 439

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  339 PATSPTTQPTP---ATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPAT 391
Cdd:PRK14959   440 PPAPPRSGIPPrpaPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPRT 495
PPE COG5651
PPE-repeat protein [Function unknown];
298-520 4.11e-04

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 44.50  E-value: 4.11e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  298 APATSPTTQPAPA---TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPT 374
Cdd:COG5651    159 AAAVALTPFTQPPptiTNPGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSGPIGLNSGPGNTGFAGTGAAA 238

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  375 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPT 454
Cdd:COG5651    239 GAAAAAAAAAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAAATGLGLGAGGAAGA 318

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  455 TQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPA 520
Cdd:COG5651    319 AGATGAGAALGAGAAAAAAGAAAGAGAAAAAAAGGAGGGGGGALGAGGGGGSAGAAAGAASGGGAA 384
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 251-388 4.23e-04

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 44.89  E-value: 4.23e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  251 SSPTTQPAPATSPTTQPAPATSPTT------------------------------------QPAPATSPTTQPAPATSPT 294
Cdd:PRK12678     1 GAPSDAAATATTDTAPRARGGGLAGmklpelralakqlgikgtsgmrkgeliaaikearggGAAAAAATPAAPAAAARRA 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  295 TQPAPATSPTTQP-APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPtTQPTPATSPTTQPTPATSP 373
Cdd:PRK12678    81 ARAAAAARQAEQPaAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRG-AARKAGEGGEQPATEARAD 159

                          170
                   ....*....|....*
gi 1831519558  374 TTQPAPATSPTTQPA 388
Cdd:PRK12678   160 AAERTEEEERDERRR 174
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 270-411 4.28e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 44.67  E-value: 4.28e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  270 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPT 348
Cdd:PRK14959   360 AMLPRLMPVESLRPSGGGASAPSGSAAEGPASGgAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDA 439

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831519558  349 PatspttqPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAT 411
Cdd:PRK14959   440 P-------PAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPRT 495
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 357-439 4.33e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.61  E-value: 4.33e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  357 PTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ-PAPATSPTTQPAPATSPTTQPAPATSPTT 435
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGsLAPPPPPPPGPAGAAPGAALPVRVPAPPA 98


                   ....
gi 1831519558  436 QPAP 439
Cdd:NF041121    99 LPNP 102
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 315-400 4.37e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.61  E-value: 4.37e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  315 TQPAPATSPTTQPAPATSPttQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTqPAPATSPTTQPAPATSPT 394
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPV 91


                   ....*.
gi 1831519558  395 TQPAPA 400
Cdd:NF041121    92 RVPAPP 97
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
293-433 4.39e-04

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 44.41  E-value: 4.39e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  293 PTTQPAPATSPTTQpAPATSPTT----QPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPT-TQPTPATSPttQP 367
Cdd:PRK12373   175 PVVKPGPQIGRYAS-EPAGGLTSlteeAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAApVPPSEAARP--KS 251

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  368 TPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP 433
Cdd:PRK12373   252 ADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIA 317
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 377-459 4.40e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.61  E-value: 4.40e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  377 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ-PAPATSPTTQPAPATSPTTQPTPGTSPTT 455
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGsLAPPPPPPPGPAGAAPGAALPVRVPAPPA 98


                   ....
gi 1831519558  456 QPAP 459
Cdd:NF041121    99 LPNP 102
PHA01929 PHA01929
putative scaffolding protein
 362-480 4.47e-04

putative scaffolding protein


Pssm-ID: 177328  Cd Length: 306  Bit Score: 43.89  E-value: 4.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  362 SPTTQPTPATSPTTQPAPATSPTTQPAP--ATSPTTQPAPATSpttqpAPATSPTTQPAPAtspttQPAPATSpttqPAP 439
Cdd:PHA01929    20 PPAAAPTPQPNPVIQPQAPVQPGQPGAPqqLAIPTQQPQPVPT-----SAMTPHVVQQAPA-----QPAPAAP----PAA 85

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1831519558  440 ATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVS 480
Cdd:PHA01929    86 GAALPEALEVPPPPAFTPNGEIVGTLAGNLEGDPQLAPSVS 126
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 346-423 4.69e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 44.55  E-value: 4.69e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  346 QPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTtqpapatsPTTQPAPATSPTTQPAPATSP 423
Cdd:PRK14954   381 APSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPT--------PEQQPPVARSAPLPPSPQASA 450
PPE COG5651
PPE-repeat protein [Function unknown];
268-490 4.88e-04

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 44.11  E-value: 4.88e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  268 APATSPTTQPAPA---TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 344
Cdd:COG5651    159 AAAVALTPFTQPPptiTNPGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSGPIGLNSGPGNTGFAGTGAAA 238

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  345 TQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 424
Cdd:COG5651    239 GAAAAAAAAAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAAATGLGLGAGGAAGA 318

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  425 TQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPA 490
Cdd:COG5651    319 AGATGAGAALGAGAAAAAAGAAAGAGAAAAAAAGGAGGGGGGALGAGGGGGSAGAAAGAASGGGAA 384
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 241-302 4.92e-04

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 44.71  E-value: 4.92e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  241 ASTSTQPAPAsspttqpAPATSPTTQPAPATSPTTQPAPATSPTTQPA--PATSPTTQPAPATS 302
Cdd:PRK06975   266 ADAAAQPATA-------APAPSRMTDTNDSKSVTSQPAAAAAAPAPPPnpPATPPEPPARRGRG 322
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 390-531 5.08e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 44.29  E-value: 5.08e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  390 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPatsPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSP 469
Cdd:PRK14959   360 AMLPRLMPVESLRPSGGGASAPSGSAAEGPASGGAATIPT---PGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPW 436

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  470 ATNPTTQPsvSSSASTQPAPATSGTTqPAPATSATTQPAPATSATTQPAPATSPTTQPAPAT 531
Cdd:PRK14959   437 DDAPPAPP--RSGIPPRPAPRMPEAS-PVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPRT 495
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 367-449 5.10e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.22  E-value: 5.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  367 PTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ-PAPATSPTTQPAPATSPTTQPAPATSPTT 445
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGsLAPPPPPPPGPAGAAPGAALPVRVPAPPA 98


                   ....
gi 1831519558  446 QPTP 449
Cdd:NF041121    99 LPNP 102
DUF612 pfam04747
Protein of unknown function, DUF612; This family includes several uncharacterized proteins ...
 246-535 5.12e-04

Protein of unknown function, DUF612; This family includes several uncharacterized proteins from Caenorhabditis elegans.


Pssm-ID: 282585 [Multi-domain]  Cd Length: 511  Bit Score: 44.28  E-value: 5.12e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  246 QPAPASSPTTQPAPATSPTTQPAPATSPTTQPAP-ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 324
Cdd:pfam04747  159 EKAEKTKKASTPAPVEEEIVVKKVANDRSAAPAPePKTPTNTPAEPAEQVQEITGKKNKKNKKKSESEATAAPASVEQVV 238

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  325 TQPAPAT-SPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP 403
Cdd:pfam04747  239 EQPKVVTeEPHQQAAPQEKKNKKNKRKSESENVPAASETPVEPVVETTPPASENQKKNKKDKKKSESEKVVEEPVQAEAP 318

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  404 TTQPAPATSP-------TTQPAPATSPTTQPApatSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQ 476
Cdd:pfam04747  319 KSKKPTADDNmdfldfvTAKEEPKDEPAETPA---APVEEVVENVVENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQ 395

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  477 PSVSSSAstqpAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATT 535
Cdd:pfam04747  396 PVESAPA----PPQVEQVVETTPPASENKKKNKKDKKKSESEKAVEEPVQAAPSSKKPT 450
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 376-530 5.17e-04

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 44.17  E-value: 5.17e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  376 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPA-PATSPTTQPAPATSPTTQPAPATSPTTQPA--PATSPTTQPTPGTS 452
Cdd:PTZ00436   191 EDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAkAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAapPAKAAAPPAKAAAP 270

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  453 PTTQPAPATSPTTQPSPATNPTTQpSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPA 530
Cdd:PTZ00436   271 PAKAAAPPAKAAAPPAKAAAPPAK-AAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAA 347
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 378-523 5.25e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 44.69  E-value: 5.25e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  378 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT--TQPTPGTSPTT 455
Cdd:PRK10263   742 EPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQqpVAPQPQYQQPQ 821

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  456 QPAPATSPTTQPSPATNPTTQPSVsssasTQPAPATSGTTQPapaTSATTQPAPATSATTQPAPATSP 523
Cdd:PRK10263   822 QPVAPQPQYQQPQQPVAPQPQDTL-----LHPLLMRNGDSRP---LHKPTTPLPSLDLLTPPPSEVEP 881
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 325-410 5.27e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.22  E-value: 5.27e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  325 TQPAPATSPTTQPAPATSPttQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPT 404
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPV 91


                   ....*.
gi 1831519558  405 TQPAPA 410
Cdd:NF041121    92 RVPAPP 97
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 279-355 5.33e-04

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 44.12  E-value: 5.33e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  279 PATSPTTQPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPTTQPapaTSPTTQPAPATSPTTQPTPATSPTT 355
Cdd:TIGR00601   77 PKTGTGKVAPPAATPTSAPTPTPSP--PASPASGMSAAPASAVEEKSPS---EESATATAPESPSTSVPSSGSDAAS 148
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 262-402 5.46e-04

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 44.51  E-value: 5.46e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  262 SPTTQPAPATSPTTQPAPATSPTTQPAP------------ATSP--------------TTQPAPATSPTTQPAPATSPTT 315
Cdd:PRK12678     2 APSDAAATATTDTAPRARGGGLAGMKLPelralakqlgikGTSGmrkgeliaaikearGGGAAAAAATPAAPAAAARRAA 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  316 QPAPATSPTTQP-APATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPT 394
Cdd:PRK12678    82 RAAAAARQAEQPaAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAA 161


                   ....*...
gi 1831519558  395 TQPAPATS 402
Cdd:PRK12678   162 ERTEEEER 169
PRK10905 PRK10905
cell division protein DamX; Validated
 245-415 5.47e-04

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 43.77  E-value: 5.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  245 TQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ-----PAPATSPTTQPAPATSPTTQPAPATSPTTQP-- 317
Cdd:PRK10905    51 VQPAPGTTSAEQTAGNTQQDVSLPPISSTPTQGQTPVATDGQqrvevQGDLNNALTQPQNQQQLNNVAVNSTLPTEPAtv 130

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  318 APATSPTTQPAPATSPTTQPAPATSPTTQPT------PATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPAT 391
Cdd:PRK10905   131 APVRNGNASRQTAKTQTAERPATTRPARKQAviepkkPQATAKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETA 210

                          170       180
                   ....*....|....*....|....
gi 1831519558  392 SPTTQPAPATSPTTQPAPATSPTT 415
Cdd:PRK10905   211 TTAPVQTASPAQTTATPAAGGKTA 234
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 327-409 5.60e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 44.22  E-value: 5.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  327 PAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQ-PAPATSPTTQPAPATSPTTQPAPATSPTT 405
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGsLAPPPPPPPGPAGAAPGAALPVRVPAPPA 98


                   ....
gi 1831519558  406 QPAP 409
Cdd:NF041121    99 LPNP 102
DUF2486 pfam10667
Protein of unknown function (DUF2486); This family is made up of members from various ...
 254-409 5.60e-04

Protein of unknown function (DUF2486); This family is made up of members from various Burkholderia spp. The function is unknown.


Pssm-ID: 402345 [Multi-domain]  Cd Length: 251  Bit Score: 43.17  E-value: 5.60e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  254 TTQPAPATSPTTQPAPATSPTTQPAPAtSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS-PTTQPAPATS 332
Cdd:pfam10667   18 QGHPVQARPPAAGPQASHEAAGFDARR-EPGFKAEPVLAPQPVLTAAQVAAVQAAHAAARDHAQAPGFAaPVHAPEPAEP 96

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  333 PTTQPAPATSPTTQPTPATSPTTQPTPATSPttQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAP 409
Cdd:pfam10667   97 AAAAPAPHTAQPSHPADHEHPKKRARAAHAA--QPRHAHDDGYVPAAGVFDRAEPATPLTAGSTVPPDVARLAQAEA 171
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 449-555 5.77e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 44.32  E-value: 5.77e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  449 PGTSPTTQPAPATSPTTQPS---PATNPTTQPSVSSSASTQPAPATSGTTQP-APATSATTQPAPATSATTQPAPATSPT 524
Cdd:PRK14951   366 PAAAAEAAAPAEKKTPARPEaaaPAAAPVAQAAAAPAPAAAPAAAASAPAAPpAAAPPAPVAAPAAAAPAAAPAAAPAAV 445

                           90       100       110
                   ....*....|....*....|....*....|.
gi 1831519558  525 TQPAPATSATTQSVPVVTTQTTMGTSPTTAG 555
Cdd:PRK14951   446 ALAPAPPAQAAPETVAIPVRVAPEPAVASAA 476
flhF PRK06995
flagellar biosynthesis protein FlhF;
285-392 5.82e-04

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 44.19  E-value: 5.82e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  285 TQPAPATSPTTQPAPATSPTTQPApATSPTTQPAPATSPTTQPAPATSPTTQPApatspTTQPTPATSPTTQPTPATSPT 364
Cdd:PRK06995    54 PAAAAPAAAQPPPAAAPAAVSRPA-APAAEPAPWLVEHAKRLTAQREQLVARAA-----APAAPEAQAPAAPAERAAAEN 127

                           90       100
                   ....*....|....*....|....*...
gi 1831519558  365 TQPTPATSPTTQPAPATSPTTQPAPATS 392
Cdd:PRK06995   128 AARRLARAAAAAPRPRVPADAAAAVADA 155
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
474-552 5.87e-04

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 44.46  E-value: 5.87e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  474 TTQPSVSSSASTQPAPATSG-TTQPAPATSATTQPAPATSAttqPAPATSPTTQPAPATSATTQSVPVVTTQTTMGTSPT 552
Cdd:PRK11907    21 SNPKLAQAEEIVTTTPATSTeAEQTTPVESDATEEADNTET---PVAATTAAEAPSSSETAETSDPTSEATDTTTSEART 97
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 345-477 5.94e-04

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 43.60  E-value: 5.94e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  345 TQPTP--ATSPTTQPTPATSPTTQPTPAtsPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAPATS 422
Cdd:NF040712   193 GRPLRplATVPRLAREPADARPEEVEPA--PAAEGAPATDSDPAEAGTPDDLA-SARRRRAGVEQPEDEPVGPGAAPAAE 269

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  423 PTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQP 477
Cdd:NF040712   270 PDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKP 324
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 328-479 5.95e-04

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 44.09  E-value: 5.95e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  328 APATSPTTQPAPATSpTTQPTPATSPTTQPTPATSPTTQPTPATspttQPAPATSPTTQPAPATSPTTQPAPATSPTTQP 407
Cdd:cd23959    100 AMAPDESLGPFRAAR-VPNPFSASSSTQRETHKTAQVAPPKAEP----QTAPVTPFGQLPMFGQHPPPAKPLPAAAAAQQ 174

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  408 APAtSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSV 479
Cdd:cd23959    175 SSA-SPGEVASPFASGTVSASPFATATDTAPSSGAPDGFPAEASAPSPFAAPASAASFPAAPVANGEAATPT 245
FhaB COG3210
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
 197-1123 6.02e-04

Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442443 [Multi-domain]  Cd Length: 1698  Bit Score: 44.37  E-value: 6.02e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  197 DLNTHNIGNNATDITNDINNVLNITATTLGPTTTTITPTTTVVPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQ 276
Cdd:COG3210    771 TLTLANANGNTSAGATLDNAGAEISIDITADGTITAAGTTAINVTGSGGTITINTATTGLTGTGDTTSGAGGSNTTDTTT 850

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  277 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQ 356
Cdd:COG3210    851 GTTSDGASGGGTAGANSGSLAATAASITVGSGGVATSTGTANAGTLTNLGTTTNAASGNGAVLATVTATGTGGGGLTGGN 930

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  357 PTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ 436
Cdd:COG3210    931 AAAGGTGAGNGTTALSGTQGNAGLSAASASDGAGDTGASSAAGSSAVGTSANSAGSTGGVIAATGILVAGNSGTTASTTG 1010

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  437 PAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQ 516
Cdd:COG3210   1011 GSGAIVAGGNGVTGTTGTASATGTGTAATAGGQNGVGVNASGISGGNAAALTASGTAGTTGGTAASNGGGGTAQASGAGT 1090

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  517 PAPATSPTTQPAPATSATTQSVPVVTTQTTMGTSPTTAGISSSPAATSPSTAVTSPSSLGTSSSPLPSSISTSALPIASS 596
Cdd:COG3210   1091 THTLGGITNGGATGTSGGTTTSTGGVTASKVGGTTTVGATGTSTASTEAAGAGTLTGLVAVSAVAGGASSASAGDTTAVA 1170

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  597 SASSSPSAASSTTPVVLSSSTIQSSSGTFPSSVASSPSTVGSTSGAASSSSYATVSTIAGSTGSTITPVPGSSSTIGSST 676
Cdd:COG3210   1171 AATTTTTGSAINGGADSAATEGTAGTDLKGGDSTGGSTTTIGTTNVTTTTTLTASDTGNTTATGGSSAGQTGSFVAAGSA 1250

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  677 PSASSSSSGTMSTISGSTGSTVTVVPGSSSTFASSTPIASSSSPGSTVTVAPGSSSTYGSSTPSASSSSSGTMSTNSGST 756
Cdd:COG3210   1251 SGTGDATTGATAGAVSNGATSTVAGNAGATATGSTVDIGSTSATSAGGSLDTTGNTAGANGATVGTGIGGTTATGTAVAA 1330

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  757 GSTVTVAPVSSSTFGSSTPIASSSSSGSTVTVVSGSSSTYGSSTPSASSSSAGTASTISGSTGSTATIVPGSSSSVGSST 836
Cdd:COG3210   1331 VNSGGVNAGGGTINTTAANTGLNGGNGATDSAAGAGSGGAAGSLAATAGAGTVLTGAGNNTGAEGTNAGRDGGVTTSGTG 1410

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  837 QSASPSSPGTMSTVSGPTGSTVTVVPGSSTSPAPSSSPNPSSSPASTGSTITISGSSSIIVSTVSGSTVSGSTGTSQSTL 916
Cdd:COG3210   1411 VGNNGGVSGTTVAGTTGSSATTGTGGTGNTTGTSVAGAGGGNADASAINTGNASSLGAGGSTAGNAVGGAVIGGTTTGGN 1490

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  917 ASSTATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGSTASSPTGSTGSTF 996
Cdd:COG3210   1491 GAGVAGATASNGGTSTGAGGTAGGTTAEVAKASLEGGEGTYGGSSVAEAGTGGGILGAVSGAGSEGGAAGGVTGSVGVGG 1570

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  997 SVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQSTLTTPSPNPSQSTSSLESSTSG 1076
Cdd:COG3210   1571 TDGAGGDTGGADDTGAQAPTAGNTATLTLSLAEGTNAEYGGTTNVTSGTAGNAGATGANSNTVVTTNGGEGVLALVAGGN 1650

                          890       900       910       920
                   ....*....|....*....|....*....|....*....|....*..
gi 1831519558 1077 ATTSSGSAGTTMTSPSQSSSVGSSQGSTSPAASTTSGEMTSQGSTQT 1123
Cdd:COG3210   1651 TTNGTTLSGAVNGAGNGWAVDLTDATLAGLGGATTAAAGNVATGDTA 1697
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
245-322 6.17e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 44.22  E-value: 6.17e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  245 TQPAPASSPTTQPAPATSPttqPAPATSPTTQPAPatsPTTQPAPATSPTTQPAPATSPTTQPAPatsPTTQPAPATS 322
Cdd:COG5373     38 AEAAEAASAPAEPEPEAAA---AATAAAPEAAPAP---VPEAPAAPPAAAEAPAPAAAAPPAEAE---PAAAPAAASS 106
flhF PRK06995
flagellar biosynthesis protein FlhF;
325-432 6.28e-04

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 44.19  E-value: 6.28e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  325 TQPAPATSPTTQPAPATSPTTQPtPATSPTTQPTPATSPTTQPTPATSPTTQPApatspTTQPAPATSPTTQPAPATSPT 404
Cdd:PRK06995    54 PAAAAPAAAQPPPAAAPAAVSRP-AAPAAEPAPWLVEHAKRLTAQREQLVARAA-----APAAPEAQAPAAPAERAAAEN 127

                           90       100
                   ....*....|....*....|....*...
gi 1831519558  405 TQPAPATSPTTQPAPATSPTTQPAPATS 432
Cdd:PRK06995   128 AARRLARAAAAAPRPRVPADAAAAVADA 155
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 258-312 6.52e-04

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 44.32  E-value: 6.52e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  258 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA--PATSPTTQPAPATS 312
Cdd:PRK06975   266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPnpPATPPEPPARRGRG 322
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 268-322 6.52e-04

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 44.32  E-value: 6.52e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  268 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA--PATSPTTQPAPATS 322
Cdd:PRK06975   266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPnpPATPPEPPARRGRG 322
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 278-332 6.52e-04

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 44.32  E-value: 6.52e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  278 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA--PATSPTTQPAPATS 332
Cdd:PRK06975   266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPnpPATPPEPPARRGRG 322
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 288-342 6.52e-04

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 44.32  E-value: 6.52e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  288 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA--PATSPTTQPAPATS 342
Cdd:PRK06975   266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPnpPATPPEPPARRGRG 322
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 378-432 6.52e-04

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 44.32  E-value: 6.52e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  378 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA--PATSPTTQPAPATS 432
Cdd:PRK06975   266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPnpPATPPEPPARRGRG 322
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
403-536 6.53e-04

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 43.64  E-value: 6.53e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  403 PTTQPAPATSPTTQpAPATSPTT----QPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPT-TQPSPATNPTTQP 477
Cdd:PRK12373   175 PVVKPGPQIGRYAS-EPAGGLTSlteeAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAApVPPSEAARPKSAD 253

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  478 svsssASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQ 536
Cdd:PRK12373   254 -----AETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPAL 307
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 243-357 6.57e-04

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 43.31  E-value: 6.57e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  243 TSTQPAPASSPTTQPAPATSPTTQPAPA---TSPTTQPA--PATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP--TT 315
Cdd:PHA02682    77 SGQSPLAPSPACAAPAPACPACAPAAPApavTCPAPAPAcpPATAPTCPPPAVCPAPARPAPACPPSTRQCPPAPPlpTP 156

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1831519558  316 QPAPATSPTTQPAPATSPttQPAPATSPTTQPTPATSPTTQP 357
Cdd:PHA02682   157 KPAPAAKPIFLHNQLPPP--DYPAASCPTIETAPAASPVLEP 196
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 264-338 6.59e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 43.96  E-value: 6.59e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  264 TTQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA 338
Cdd:PRK14965   381 APAPPSAAWGAPTPAAPAAP---PPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGDRWRA 452
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 254-328 6.59e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 43.96  E-value: 6.59e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  254 TTQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA 328
Cdd:PRK14965   381 APAPPSAAWGAPTPAAPAAP---PPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGDRWRA 452
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 308-362 6.69e-04

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 43.94  E-value: 6.69e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  308 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP--TPATSPTTQPTPATS 362
Cdd:PRK06975   266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPpnPPATPPEPPARRGRG 322
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
323-471 6.76e-04

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 43.64  E-value: 6.76e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  323 PTTQPAPATSPTTQpAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPAT-SPTTQPAPAt 401
Cdd:PRK12373   175 PVVKPGPQIGRYAS-EPAGGLTSLTEEAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPpSEAARPKSA- 252

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  402 SPTTQPAPATSPTTQPAPAtspttqpAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPAT 471
Cdd:PRK12373   253 DAETNAALKTPATAPKAAA-------KNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLG 315
PRK10819 PRK10819
transport protein TonB; Provisional
 274-389 6.87e-04

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 43.13  E-value: 6.87e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  274 TTQPAPATSPTTQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTtQPTPAtSP 353
Cdd:PRK10819    57 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPK---EAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPV-EPRPA-SP 131

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1831519558  354 TTQPTPAtspttQPTPATSPTTQPAPATSPTTQPAP 389
Cdd:PRK10819   132 FENTAPA-----RPTSSTATAAASKPVTSVSSGPRA 162
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 328-382 6.92e-04

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 43.94  E-value: 6.92e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  328 APATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQP--TPATSPTTQPAPATS 382
Cdd:PRK06975   266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPpnPPATPPEPPARRGRG 322
flhF PRK06995
flagellar biosynthesis protein FlhF;
275-382 6.96e-04

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 43.80  E-value: 6.96e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  275 TQPAPATSPTTQPAPATSPTTQPApATSPTTQPAPATSPTTQPAPATSPTTQPApatspTTQPAPATSPTTQPTPATSPT 354
Cdd:PRK06995    54 PAAAAPAAAQPPPAAAPAAVSRPA-APAAEPAPWLVEHAKRLTAQREQLVARAA-----APAAPEAQAPAAPAERAAAEN 127

                           90       100
                   ....*....|....*....|....*...
gi 1831519558  355 TQPTPATSPTTQPTPATSPTTQPAPATS 382
Cdd:PRK06995   128 AARRLARAAAAAPRPRVPADAAAAVADA 155
flhF PRK06995
flagellar biosynthesis protein FlhF;
335-442 6.96e-04

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 43.80  E-value: 6.96e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  335 TQPAPATSPTTQPTPATSPTTQPtPATSPTTQPTPATSPTTQPAPATSPTTQPApatspTTQPAPATSPTTQPAPATSPT 414
Cdd:PRK06995    54 PAAAAPAAAQPPPAAAPAAVSRP-AAPAAEPAPWLVEHAKRLTAQREQLVARAA-----APAAPEAQAPAAPAERAAAEN 127

                           90       100
                   ....*....|....*....|....*...
gi 1831519558  415 TQPAPATSPTTQPAPATSPTTQPAPATS 442
Cdd:PRK06995   128 AARRLARAAAAAPRPRVPADAAAAVADA 155
motB PRK05996
MotB family protein;
336-418 7.04e-04

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 43.92  E-value: 7.04e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  336 QPAPATSPTTQPTPATSPTTQPtpATSPTTQPTPATSPTTQPAPAT-SPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 414
Cdd:PRK05996   197 DLLPPGQAREQAQGAKSATAAP--ATVPQAAPLPQAQPKKAATEEElIADAKKAATGEPAANAAKAAKPEPMPDDQQKEA 274


                   ....
gi 1831519558  415 TQPA 418
Cdd:PRK05996   275 EQLQ 278
PBP1 COG5180
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ...
 246-548 7.20e-04

PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];


Pssm-ID: 444064 [Multi-domain]  Cd Length: 548  Bit Score: 43.90  E-value: 7.20e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  246 QPAPASSPTTQPAPA------TSPTTQPAPATSPTTQPAPATSPTTQPAPATSpTTQPAPATSPTTQPAPATSPTTQPAP 319
Cdd:COG5180    165 DPDGDSASTLPPPAEkldkvlTEPRDALKDSPEKLDRPKVEVKDEAQEEPPDL-TGGADHPRPEAASSPKVDPPSTSEAR 243

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  320 ATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPaPATSPTTQPAP 399
Cdd:COG5180    244 SRPATVDAQPEMRPPADAKERRRAAIGDTPAAEPPGLPVLEAGSEPQSDAPEAETARPIDVKGVASAP-PATRPVRPPGG 322

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  400 ATSPTTQ--PAPATSPTTQPAPATS----PTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNP 473
Cdd:COG5180    323 ARDPGTPrpGQPTERPAGVPEAASDagqpPSAYPPAEEAVPGKPLEQGAPRPGSSGGDGAPFQPPNGAPQPGLGRRGAPG 402

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  474 TTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPAT--SPTTQP-APATSATTQSVPVVTTQTTMG 548
Cdd:COG5180    403 PPMGAGDLVQAALDGGGRETASLGGAAGGAGQGPKADFVPGDAESVSGpaGLADQAgAAASTAMADFVAPVTDATPVD 480
flhF PRK06995
flagellar biosynthesis protein FlhF;
318-422 7.21e-04

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 43.80  E-value: 7.21e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  318 APATSPTTQPAPATSPTTQPAPATSPTTQPTPATSP--TTQPTPATSPTtQPTPATSPTTQPAPATSPTTQPAPATSPTT 395
Cdd:PRK06995    50 ALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPwlVEHAKRLTAQR-EQLVARAAAPAAPEAQAPAAPAERAAAENA 128

                           90       100
                   ....*....|....*....|....*..
gi 1831519558  396 QPAPATSPTTQPAPATSPTTQPAPATS 422
Cdd:PRK06995   129 ARRLARAAAAAPRPRVPADAAAAVADA 155
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 238-357 7.26e-04

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 43.60  E-value: 7.26e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  238 VVPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQ---PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAT-SP 313
Cdd:NF040712   202 VPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDdlaSARRRRAGVEQPEDEPVGPGAAPAAEPDEATRDAGePP 281

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1831519558  314 TTQPAPATSPTTQPAPATSPTTQPApATSPTTQPTPATSPTTQP 357
Cdd:NF040712   282 APGAAETPEAAEPPAPAPAAPAAPA-APEAEEPARPEPPPAPKP 324
PHA01929 PHA01929
putative scaffolding protein
 411-510 7.32e-04

putative scaffolding protein


Pssm-ID: 177328  Cd Length: 306  Bit Score: 43.12  E-value: 7.32e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  411 TSPTTQPAPATSP--TTQPAPATSPTTQPAPATSPTTQPTPGTSPTtqPAPATSPTTQPSPATNPTTQPSVSSSASTQPA 488
Cdd:PHA01929     1 TTQNEQQLPPGLAglVANVPPAAAPTPQPNPVIQPQAPVQPGQPGA--PQQLAIPTQQPQPVPTSAMTPHVVQQAPAQPA 78

                           90       100
                   ....*....|....*....|..
gi 1831519558  489 PATSGTTQPAPATSATTQPAPA 510
Cdd:PHA01929    79 PAAPPAAGAALPEALEVPPPPA 100
PPE COG5651
PPE-repeat protein [Function unknown];
280-503 7.34e-04

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 43.73  E-value: 7.34e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  280 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTP 359
Cdd:COG5651    164 LTPFTQPPPTITNPGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSGPIGLNSGPGNTGFAGTGAAAGAAAA 243

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  360 ATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATsptTQPAPATSPTTQPAP 439
Cdd:COG5651    244 AAAAAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAAA---TGLGLGAGGAAGAAG 320

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  440 ATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSA 503
Cdd:COG5651    321 ATGAGAALGAGAAAAAAGAAAGAGAAAAAAAGGAGGGGGGALGAGGGGGSAGAAAGAASGGGAA 384
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
385-462 7.63e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 43.84  E-value: 7.63e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  385 TQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPatsPTTQPAPATSPTTQPAPATSPTTQPTPgtsPTTQPAPATS 462
Cdd:COG5373     38 AEAAEAASAPAEPEPEAAA---AATAAAPEAAPAP---VPEAPAAPPAAAEAPAPAAAAPPAEAE---PAAAPAAASS 106
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 274-343 7.82e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 43.96  E-value: 7.82e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  274 TTQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP 343
Cdd:PRK14965   381 APAPPSAAWGAPTPAAPAAP---PPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAG 447
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 374-443 7.82e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 43.96  E-value: 7.82e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  374 TTQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP 443
Cdd:PRK14965   381 APAPPSAAWGAPTPAAPAAP---PPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAG 447
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 384-462 7.83e-04

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 43.52  E-value: 7.83e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  384 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAtsPTTQPTPGTSPTTQPAPATS 462
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAK--PPPTPVARADPRETRVPMSR 196
DUF2486 pfam10667
Protein of unknown function (DUF2486); This family is made up of members from various ...
 247-399 7.95e-04

Protein of unknown function (DUF2486); This family is made up of members from various Burkholderia spp. The function is unknown.


Pssm-ID: 402345 [Multi-domain]  Cd Length: 251  Bit Score: 42.78  E-value: 7.95e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  247 PAPASSPTTQPAPATSPTTQPAPAtSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTT 325
Cdd:pfam10667   21 PVQARPPAAGPQASHEAAGFDARR-EPGFKAEPVLAPQPVLTAAQVAAVQAAHAAARDHAQAPGFAaPVHAPEPAEPAAA 99

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  326 QPAPATSPTTQPAPATSPTTQPTPATSPttQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAP 399
Cdd:pfam10667  100 APAPHTAQPSHPADHEHPKKRARAAHAA--QPRHAHDDGYVPAAGVFDRAEPATPLTAGSTVPPDVARLAQAEA 171
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 376-498 8.14e-04

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 43.74  E-value: 8.14e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  376 QPAPATSPTTQPAPATSPTTQPAPATSPTTQP-APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPt 454
Cdd:PRK12678    62 GAAAAAATPAAPAAAARRAARAAAAARQAEQPaAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRG- 140

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1831519558  455 TQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPA 498
Cdd:PRK12678   141 AARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAE 184
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 240-320 8.17e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 43.45  E-value: 8.17e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAP 319
Cdd:NF041121    18 AAAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPVRVPAP 96


                   .
gi 1831519558  320 A 320
Cdd:NF041121    97 P 97
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 382-480 8.17e-04

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 43.92  E-value: 8.17e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  382 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT--QPAPATSPTTQPAPATSPttqpaPATSPTTQPTPGTSPTTQPAP 459
Cdd:PLN02217   568 STNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAghLGSPPATPSKIVSPSTSP-----PASHLGSPSTTPSSPESSIKV 642

                           90       100
                   ....*....|....*....|..
gi 1831519558  460 ATSPTTQPSPATN-PTTQPSVS 480
Cdd:PLN02217   643 ASTETASPESSIKvASTESSVS 664
flhF PRK06995
flagellar biosynthesis protein FlhF;
365-479 8.34e-04

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 43.42  E-value: 8.34e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  365 TQPTPATSPTTQPAPATSPTTQPApATSPTTQPAPATSPTTQPAPATSPTTQPApatspTTQPAPATSPTTQPAPATSPT 444
Cdd:PRK06995    54 PAAAAPAAAQPPPAAAPAAVSRPA-APAAEPAPWLVEHAKRLTAQREQLVARAA-----APAAPEAQAPAAPAERAAAEN 127

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1831519558  445 tqPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSV 479
Cdd:PRK06995   128 --AARRLARAAAAAPRPRVPADAAAAVADAVKARI 160
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 375-523 8.35e-04

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 43.22  E-value: 8.35e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  375 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPTPGTSPT 454
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLA-SARRRRAGVEQPEDEPVGPGAAPAAEPD 271

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  455 TQPAPATSPTTQPSPATNPTTQPsvsssastqPAPATS---GTTQPAPATSATTQPAPATSATTQPAPATSP 523
Cdd:NF040712   272 EATRDAGEPPAPGAAETPEAAEP---------PAPAPAapaAPAAPEAEEPARPEPPPAPKPKRRRRRASVP 334
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
255-332 8.37e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 43.84  E-value: 8.37e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  255 TQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPatsPTTQPAPATSPTTQPAPATSPTTQPAPatsPTTQPAPATS 332
Cdd:COG5373     38 AEAAEAASAPAEPEPEAAA---AATAAAPEAAPAP---VPEAPAAPPAAAEAPAPAAAAPPAEAE---PAAAPAAASS 106
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
265-342 8.37e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 43.84  E-value: 8.37e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  265 TQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPatsPTTQPAPATSPTTQPAPATSPTTQPAPatsPTTQPAPATS 342
Cdd:COG5373     38 AEAAEAASAPAEPEPEAAA---AATAAAPEAAPAP---VPEAPAAPPAAAEAPAPAAAAPPAEAE---PAAAPAAASS 106
flhF PRK06995
flagellar biosynthesis protein FlhF;
375-482 8.48e-04

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 43.42  E-value: 8.48e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  375 TQPAPATSPTTQPAPATSPTTQPApATSPTTQPAPATSPTTQPAPATSPTTQPApATSPTTQPAPATSPTTQPTPGTSPT 454
Cdd:PRK06995    54 PAAAAPAAAQPPPAAAPAAVSRPA-APAAEPAPWLVEHAKRLTAQREQLVARAA-APAAPEAQAPAAPAERAAAENAARR 131

                           90       100
                   ....*....|....*....|....*...
gi 1831519558  455 TQPAPATSPTTQPSPATNPTTQPSVSSS 482
Cdd:PRK06995   132 LARAAAAAPRPRVPADAAAAVADAVKAR 159
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 298-352 8.56e-04

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 43.94  E-value: 8.56e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  298 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA--PATSPTTQPTPATS 352
Cdd:PRK06975   266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPnpPATPPEPPARRGRG 322
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
270-408 8.66e-04

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 43.19  E-value: 8.66e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  270 ATSPTTQPAPATSPTTQPAPATSptTQPAPATSPTTQPAPATSPTTQPAPAT---SPTTQPAPATSPTTQPAPATSPTTQ 346
Cdd:PRK13335    20 AITVTTQSVKAEKIQSTKVDKVP--TLKAERLAMINITAGANSATTQAANTRqerTPKLEKAPNTNEEKTSASKIEKISQ 97

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  347 PtPATSPTTQPTPATSPTTQPTPATSP-TTQPAPA-TSPTTQPAPATSPTTQPAPATSPTTQPA 408
Cdd:PRK13335    98 P-KQEEQKSLNISATPAPKQEQSQTTTeSTTPKTKvTTPPSTNTPQPMQSTKSDTPQSPTIKQA 160
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
363-503 8.99e-04

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 43.25  E-value: 8.99e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  363 PTTQPTPATSPTTQpAPATSPTT----QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT-TQPAPATSPttQP 437
Cdd:PRK12373   175 PVVKPGPQIGRYAS-EPAGGLTSlteeAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAApVPPSEAARP--KS 251

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  438 APATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSA 503
Cdd:PRK12373   252 ADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIA 317
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 292-377 9.05e-04

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 43.54  E-value: 9.05e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  292 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT--QPAPATSPTTQPAPATSPttqptPATSPTTQPTPATSPTTQPTP 369
Cdd:PLN02217   568 STNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAghLGSPPATPSKIVSPSTSP-----PASHLGSPSTTPSSPESSIKV 642


                   ....*...
gi 1831519558  370 ATSPTTQP 377
Cdd:PLN02217   643 ASTETASP 650
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 282-367 9.05e-04

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 43.54  E-value: 9.05e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  282 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT--QPAPATSPTTQPAPATSPttqpaPATSPTTQPTPATSPTTQPTP 359
Cdd:PLN02217   568 STNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAghLGSPPATPSKIVSPSTSP-----PASHLGSPSTTPSSPESSIKV 642


                   ....*...
gi 1831519558  360 ATSPTTQP 367
Cdd:PLN02217   643 ASTETASP 650
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 355-440 9.06e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 43.45  E-value: 9.06e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  355 TQPTPATSPTTQPTPATSPttQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPT 434
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPV 91


                   ....*.
gi 1831519558  435 TQPAPA 440
Cdd:NF041121    92 RVPAPP 97
motB PRK05996
MotB family protein;
276-358 9.12e-04

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 43.53  E-value: 9.12e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  276 QPAPATSPTTQPAPATSPTTqpAPATSPTTQPAPATSPTTQPAPAT-SPTTQPAPATSPTTQPAPATSPTTQPTPATSPT 354
Cdd:PRK05996   197 DLLPPGQAREQAQGAKSATA--APATVPQAAPLPQAQPKKAATEEElIADAKKAATGEPAANAAKAAKPEPMPDDQQKEA 274


                   ....
gi 1831519558  355 TQPT 358
Cdd:PRK05996   275 EQLQ 278
flhF PRK06995
flagellar biosynthesis protein FlhF;
255-362 9.16e-04

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 43.42  E-value: 9.16e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  255 TQPAPATSPTTQPAPATSPTTQPApATSPTTQPAPATSPTTQPAPATSPTTQPApatspTTQPAPATSPTTQPAPATSPT 334
Cdd:PRK06995    54 PAAAAPAAAQPPPAAAPAAVSRPA-APAAEPAPWLVEHAKRLTAQREQLVARAA-----APAAPEAQAPAAPAERAAAEN 127

                           90       100
                   ....*....|....*....|....*...
gi 1831519558  335 TQPAPATSPTTQPTPATSPTTQPTPATS 362
Cdd:PRK06995   128 AARRLARAAAAAPRPRVPADAAAAVADA 155
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 318-372 9.24e-04

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 43.55  E-value: 9.24e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  318 APATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQP--TPATSPTTQPTPATS 372
Cdd:PRK06975   266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPpnPPATPPEPPARRGRG 322
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 247-371 9.29e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 43.52  E-value: 9.29e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  247 PAPASSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT 325
Cdd:PRK14959   367 PVESLRPSGGGASAPSGSAAEGPASGgAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRS 446

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1831519558  326 QPAP---ATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPAT 371
Cdd:PRK14959   447 GIPPrpaPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPRT 495
flhF PRK06995
flagellar biosynthesis protein FlhF;
305-412 9.32e-04

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 43.42  E-value: 9.32e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  305 TQPAPATSPTTQPAPATSPTTQPApATSPTTQPAPATSPTTQPTPAtspttQPTPATSPTTQPTPATSPTTQPAPATSPT 384
Cdd:PRK06995    54 PAAAAPAAAQPPPAAAPAAVSRPA-APAAEPAPWLVEHAKRLTAQR-----EQLVARAAAPAAPEAQAPAAPAERAAAEN 127

                           90       100
                   ....*....|....*....|....*...
gi 1831519558  385 TQPAPATSPTTQPAPATSPTTQPAPATS 412
Cdd:PRK06995   128 AARRLARAAAAAPRPRVPADAAAAVADA 155
PHA03294 PHA03294
envelope glycoprotein H; Provisional
 300-514 9.39e-04

envelope glycoprotein H; Provisional


Pssm-ID: 223035  Cd Length: 835  Bit Score: 43.55  E-value: 9.39e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  300 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPaTSPTTQPTPATSPTTQPTPATSPTTQP-TPATSPTTQPA 378
Cdd:PHA03294    16 AALAGATPAPATPDEGGRATYWVGQVDAWFRARDDFRDTN-FGRLWIPSLPNGADLSTIFLRPPAEFVlTGASSPLGQLL 94

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  379 --PATSPTTQPAPATSPTTQPAPATSPTTQPAPatSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQ 456
Cdd:PHA03294    95 fvLPTALLGQPTFAKLPARAPTGRLPPPVAPLS--GLLGNPNLAPYLRTRHLVDFSVVPDPRSLTRWVFDRSDTAATKAH 172

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  457 PAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSAT 514
Cdd:PHA03294   173 PSGVALPPPRAPPPRNTTDPATIKPNDHLNPATTFFLDAELLLRTPKRSVYVSPFAAV 230
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
247-354 9.45e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.71  E-value: 9.45e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  247 PAPASSPTTQPAPATSP-TTQPAPATSPTTQPAPATSPTTQPAPATS--------PTTQPAPA----------------T 301
Cdd:PRK12323   448 PAPAPAPAAAPAAAARPaAAGPRPVAAAAAAAPARAAPAAAPAPADDdpppweelPPEFASPApaqpdaapagwvaesiP 527

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  302 SPTTQPAPATSPTTQPAPATS---PTTQPAPATSPTTQPAPATSPTTQPTPATSPT 354
Cdd:PRK12323   528 DPATADPDDAFETLAPAPAAApapRAAAATEPVVAPRPPRASASGLPDMFDGDWPA 583
PPE COG5651
PPE-repeat protein [Function unknown];
288-510 9.59e-04

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 43.34  E-value: 9.59e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  288 APATSPTTQPAPA---TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPT 364
Cdd:COG5651    159 AAAVALTPFTQPPptiTNPGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSGPIGLNSGPGNTGFAGTGAAA 238

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  365 TQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 444
Cdd:COG5651    239 GAAAAAAAAAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAAATGLGLGAGGAAGA 318

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  445 TQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPA 510
Cdd:COG5651    319 AGATGAGAALGAGAAAAAAGAAAGAGAAAAAAAGGAGGGGGGALGAGGGGGSAGAAAGAASGGGAA 384
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 241-318 9.84e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 43.58  E-value: 9.84e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  241 ASTSTQPAPASSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA 318
Cdd:PRK14965   378 ERGAPAPPSAAWGAPTPAAPAAP---PPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGDRWRA 452
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 238-308 9.84e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 43.58  E-value: 9.84e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1831519558  238 VVPASTSTQPAPASSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA 308
Cdd:PRK14965   385 PSAAWGAPTPAAPAAP---PPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGDRWRA 452
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 483-539 9.89e-04

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 43.55  E-value: 9.89e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  483 ASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPAtSPTTQPAPATSATTQSVP 539
Cdd:PRK06975   261 AFLTWADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAA-AAAPAPPPNPPATPPEPP 316
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 359-493 1.00e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 43.01  E-value: 1.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  359 PATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPApaTSPTTQPAPATSPTTQPAPATSPttqPAPATSPTTQPA 438
Cdd:PTZ00436   222 PAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAA--APPAKAAAPPAKAAAPPAKAAAP---PAKAAAPPAKAA 296

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  439 PATSPTTQPtPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSG 493
Cdd:PTZ00436   297 AAPAKAAAA-PAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAPVG 350
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 355-491 1.00e-03

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 43.22  E-value: 1.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  355 TQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAPATSPT 434
Cdd:NF040712   193 GRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLA-SARRRRAGVEQPEDEPVGPGAAPAAEPD 271

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  435 TQPAPATsptTQPTPGTSPTTQPAPATSPttQPSPATNPTTqPSVSSSASTQPAPAT 491
Cdd:NF040712   272 EATRDAG---EPPAPGAAETPEAAEPPAP--APAAPAAPAA-PEAEEPARPEPPPAP 322
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 238-347 1.01e-03

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 42.54  E-value: 1.01e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  238 VVPASTSTQPAPASSPTTQPAPA---TSPTTQPA--PATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS 312
Cdd:PHA02682    82 LAPSPACAAPAPACPACAPAAPApavTCPAPAPAcpPATAPTCPPPAVCPAPARPAPACPPSTRQCPPAPPLPTPKPAPA 161

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1831519558  313 PTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP 347
Cdd:PHA02682   162 AKPIFLHNQLPPPDYPAASCPTIETAPAASPVLEP 196
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 344-418 1.02e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 43.58  E-value: 1.02e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  344 TTQPTPATSPTTQPTPATSPttqPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA 418
Cdd:PRK14965   381 APAPPSAAWGAPTPAAPAAP---PPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGDRWRA 452
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 354-428 1.03e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 43.58  E-value: 1.03e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  354 TTQPTPATSPTTQPTPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA 428
Cdd:PRK14965   381 APAPPSAAWGAPTPAAPAAP---PPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGDRWRA 452
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 372-518 1.03e-03

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 43.35  E-value: 1.03e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  372 SPTTQPAPATSPTTQPAPATSPTTQPAP------------ATSP--------------TTQPAPATSPTTQPAPATSPTT 425
Cdd:PRK12678     2 APSDAAATATTDTAPRARGGGLAGMKLPelralakqlgikGTSGmrkgeliaaikearGGGAAAAAATPAAPAAAARRAA 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  426 QPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATT 505
Cdd:PRK12678    82 RAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAA 161

                          170
                   ....*....|...
gi 1831519558  506 QPAPATSATTQPA 518
Cdd:PRK12678   162 ERTEEEERDERRR 174
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 349-477 1.07e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 43.54  E-value: 1.07e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  349 PATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT--TQPAPATSPTTQ 426
Cdd:PRK10263   743 PLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQqpVAPQPQYQQPQQ 822

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  427 PAPATSPTTQPAPATSPTTQPT---PGTSPTTQPAPATSPTTqPSPATNPTTQP 477
Cdd:PRK10263   823 PVAPQPQYQQPQQPVAPQPQDTllhPLLMRNGDSRPLHKPTT-PLPSLDLLTPP 875
PHA03294 PHA03294
envelope glycoprotein H; Provisional
 250-414 1.08e-03

envelope glycoprotein H; Provisional


Pssm-ID: 223035  Cd Length: 835  Bit Score: 43.55  E-value: 1.08e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  250 ASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPaTSPTTQPAPATSPTTQPAPATSPTTQP-APATSPTTQPA 328
Cdd:PHA03294    16 AALAGATPAPATPDEGGRATYWVGQVDAWFRARDDFRDTN-FGRLWIPSLPNGADLSTIFLRPPAEFVlTGASSPLGQLL 94

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  329 --PATSPTTQPAPATSPTTQPTPATSPTTQPTPA--TSP------TTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPA 398
Cdd:PHA03294    95 fvLPTALLGQPTFAKLPARAPTGRLPPPVAPLSGllGNPnlapylRTRHLVDFSVVPDPRSLTRWVFDRSDTAATKAHPS 174

                          170
                   ....*....|....*.
gi 1831519558  399 PATSPTTQPAPATSPT 414
Cdd:PHA03294   175 GVALPPPRAPPPRNTT 190
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 318-473 1.09e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 43.62  E-value: 1.09e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  318 APATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAP-ATSPTTQPAPATSPttq 396
Cdd:PHA03307   769 AEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSeSSGPARPPGAAARP--- 845

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  397 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGtSPTTQPAPATSPTTQPSPATNP 473
Cdd:PHA03307   846 PPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAG-APAPRPRPAPRVKLGPMPPGGP 921
PHA03255 PHA03255
BDLF3; Provisional
 391-534 1.13e-03

BDLF3; Provisional


Pssm-ID: 165513 [Multi-domain]  Cd Length: 234  Bit Score: 42.20  E-value: 1.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  391 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTpGTSPTTQPAPATSPTTQPSPA 470
Cdd:PHA03255    25 TSSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNTTTVT-STGTTVTPVPTTSNASTINVT 103

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  471 TNPTTQPSVSSSA--STQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSAT 534
Cdd:PHA03255   104 TKVTAQNITATEAgtGTSTGVTSNVTTRSSSTTSATTRITNATTLAPTLSSKGTSNATKTTAELPT 169
DUF4106 pfam13388
Protein of unknown function (DUF4106); This family of proteins are found in large numbers in ...
 399-487 1.14e-03

Protein of unknown function (DUF4106); This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown.


Pssm-ID: 404296  Cd Length: 431  Bit Score: 42.96  E-value: 1.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  399 PATSPTTQPAPATSPTTQPA------PATSPTTQPaPATSPTTQpAPATSPTTQPTpgtspTTQPAPATSPTTQPSPatN 472
Cdd:pfam13388  173 PPNPPREAPAPGLPKTFTSShghrhrHAPKPTVQN-PAQQPTVQ-NPAQQPTQQPT-----VQNPAQQQNPAQQPPP--Q 243

                           90
                   ....*....|....*
gi 1831519558  473 PTTQPSVSSSASTQP 487
Cdd:pfam13388  244 PAQQPTVQNPAQQQP 258
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
330-409 1.15e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 42.70  E-value: 1.15e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  330 ATSPTTQPAPATSPTTqpTPATSPttQPTPATSPTTQPTPATSPTTQPAP-ATSPTTQPAPATSPTTQPAPATSPTTQPA 408
Cdd:PRK13042    20 VITTTTQAANATTPSS--TKVEAP--QSTPPSTKVEAPQSKPNATTPPSTkVEAPQQTPNATTPSSTKVETPQSPTTKQV 95


                   .
gi 1831519558  409 P 409
Cdd:PRK13042    96 P 96
flhF PRK06995
flagellar biosynthesis protein FlhF;
265-372 1.16e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 43.03  E-value: 1.16e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  265 TQPAPATSPTTQPAPATSPTTQPApATSPTTQPAPATSPTTQPAPATSPTTQPApatspTTQPAPATSPTTQPAPATSPT 344
Cdd:PRK06995    54 PAAAAPAAAQPPPAAAPAAVSRPA-APAAEPAPWLVEHAKRLTAQREQLVARAA-----APAAPEAQAPAAPAERAAAEN 127

                           90       100
                   ....*....|....*....|....*...
gi 1831519558  345 TQPTPATSPTTQPTPATSPTTQPTPATS 372
Cdd:PRK06995   128 AARRLARAAAAAPRPRVPADAAAAVADA 155
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 288-460 1.16e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 43.62  E-value: 1.16e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  288 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTP-ATSPTTQPTPATSPttq 366
Cdd:PHA03307   769 AEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSeSSGPARPPGAAARP--- 845

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  367 PTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPaPATSPTTQPAPATSPTTQPAPATSPTT- 445
Cdd:PHA03307   846 PPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAP-PAGAPAPRPRPAPRVKLGPMPPGGPDPr 924

                          170
                   ....*....|....*....
gi 1831519558  446 ----QPTPGTSPTTQPAPA 460
Cdd:PHA03307   925 ggfrRVPPGDLHTPAPSAA 943
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
349-422 1.18e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 43.45  E-value: 1.18e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  349 PATSPTTQPTPATSPTTQPTPATsPTTQPAPatsPTTQPAPATSPTTQPAPATSPTTQPAPatsPTTQPAPATS 422
Cdd:COG5373     40 AAEAASAPAEPEPEAAAAATAAA-PEAAPAP---VPEAPAAPPAAAEAPAPAAAAPPAEAE---PAAAPAAASS 106
PRK14963 PRK14963
DNA polymerase III subunits gamma and tau; Provisional
 327-413 1.19e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184927 [Multi-domain]  Cd Length: 504  Bit Score: 43.29  E-value: 1.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  327 PAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATspttqPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ 406
Cdd:PRK14963   346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSA-----PTAAATAAGAPLPDFDPRPRGPPAPEPARSAEAPPLVAPA 420


                   ....*..
gi 1831519558  407 PAPATSP 413
Cdd:PRK14963   421 AAPAGLA 427
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 284-362 1.20e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 43.13  E-value: 1.20e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  284 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAtsPTTQPTPATSPTTQPTPATS 362
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAK--PPPTPVARADPRETRVPMSR 196
PRK10819 PRK10819
transport protein TonB; Provisional
 284-399 1.22e-03

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 42.36  E-value: 1.22e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  284 TTQPAPATSPTTQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTtQPTPAtSP 363
Cdd:PRK10819    57 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPK---EAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPV-EPRPA-SP 131

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1831519558  364 TTQPTPAtspttQPAPATSPTTQPAPATSPTTQPAP 399
Cdd:PRK10819   132 FENTAPA-----RPTSSTATAAASKPVTSVSSGPRA 162
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 240-292 1.22e-03

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 43.17  E-value: 1.22e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPA--PATSPTTQPAPATS 292
Cdd:PRK06975   268 AAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPnpPATPPEPPARRGRG 322
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 326-393 1.23e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 43.39  E-value: 1.23e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  326 QPAPATSPTT------QPAPATSPTTQPTPATSPTTQPTPATSPTTQPTpatsPTTQPAPATSPTTQPAPATSP 393
Cdd:PRK14954   381 APSPAGSPDVkkkapePDLPQPDRHPGPAKPEAPGARPAELPSPASAPT----PEQQPPVARSAPLPPSPQASA 450
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 370-493 1.30e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 43.13  E-value: 1.30e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  370 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATS-PTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS------ 442
Cdd:PRK14959   360 AMLPRLMPVESLRPSGGGASAPSGSAAEGPASGgAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRvpwdda 439

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  443 PTTQPTPGTSPTTQPA-PATSPTTQPSPATNPTTQPSVSSSASTQPAPATSG 493
Cdd:PRK14959   440 PPAPPRSGIPPRPAPRmPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPS 491
GGN pfam15685
Gametogenetin; GGN is a family of proteins largely found in mammals. It reacts with POG in the ...
 291-504 1.30e-03

Gametogenetin; GGN is a family of proteins largely found in mammals. It reacts with POG in the maturation of sperm and is expressed virtually only in the testis. It is found to be associated with the intracellular membrane, binds with GGNBP1 and may be involved in vesicular trafficking.


Pssm-ID: 434857 [Multi-domain]  Cd Length: 668  Bit Score: 43.22  E-value: 1.30e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  291 TSPTTQPAPATSPTTQPAPATSPTTQPA-PATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSpTTQPTP 369
Cdd:pfam15685  326 SGGPAAPASHARALPPPAYTTFPGSKPKfDWVSPPDGPERHFRFNGAGGGIGAPRRRAAALSGPWGSPPPPPG-KAHPIP 404

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  370 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPApATSPTTQPTP 449
Cdd:pfam15685  405 GPRRPAPALLAPPMFIFPAPTNGEPVRPGPPAPQALLPRPPPPTPPATPPPVPPPIPQLPALQPMPLAA-ARPPTPRPCP 483

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  450 GTSPTTQpAPATSPTTQPSPATNPTTQPSVSS--SASTQPAPATSGTTQPAPATSAT 504
Cdd:pfam15685  484 GHGESAL-APAPTAPLPPALAADQAPAPALAAapAPSPAPAPATADPLPPAPAPIKA 539
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
290-428 1.31e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 42.81  E-value: 1.31e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  290 ATSPTTQPAPATSPTTQPAPATSptTQPAPATSPTTQPAPATSPTTQPAPA-TSPTTQPTPATSPTTQPTPAT-SPTTQP 367
Cdd:PRK13335    20 AITVTTQSVKAEKIQSTKVDKVP--TLKAERLAMINITAGANSATTQAANTrQERTPKLEKAPNTNEEKTSASkIEKISQ 97

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831519558  368 TPATSPTTQPAPATSPTTQPAPATSP-TTQPAPA-TSPTTQPAPATSPTTQPAPATSPTTQPA 428
Cdd:PRK13335    98 PKQEEQKSLNISATPAPKQEQSQTTTeSTTPKTKvTTPPSTNTPQPMQSTKSDTPQSPTIKQA 160
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 284-352 1.32e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 43.19  E-value: 1.32e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  284 TTQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPAtSPTTQPAPATSPTTQPTPATS 352
Cdd:PRK14965   381 APAPPSAAWGAPTPAAPAAP---PPAAAPPVPPAAPARPAAARPAPA-PAPPAAAAPPARSADPAAAAS 445
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 334-408 1.33e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 43.19  E-value: 1.33e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  334 TTQPAPATSPTTQPTPATSPttqPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPA 408
Cdd:PRK14965   381 APAPPSAAWGAPTPAAPAAP---PPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGDRWRA 452
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 419-493 1.34e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 42.57  E-value: 1.34e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  419 PATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTtqPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSG 493
Cdd:TIGR00601   77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAA--PASAVEEKSPSEESATATAPESPSTSVPSSGSDAAST 149
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
330-466 1.34e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 42.81  E-value: 1.34e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  330 ATSPTTQPAPATSptTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPAT---SPTTQPAPATSPTTQPAPATSPTTQ 406
Cdd:PRK13335    20 AITVTTQSVKAEK--IQSTKVDKVPTLKAERLAMINITAGANSATTQAANTRqerTPKLEKAPNTNEEKTSASKIEKISQ 97

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  407 PaPATSPTTQPAPATSPTTQPAPATSP-TTQPAPA-TSPTTQPTPGTSPTTQPAPATSPTTQ 466
Cdd:PRK13335    98 P-KQEEQKSLNISATPAPKQEQSQTTTeSTTPKTKvTTPPSTNTPQPMQSTKSDTPQSPTIK 158
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 336-413 1.36e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 43.01  E-value: 1.36e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  336 QPAPATSPttqPTPATSPTtQPTPATSPTTQPTPATSPTTQPAPATSpttqPAPATSPTTQPAPATSPTTQPAPATSP 413
Cdd:PRK14954   381 APSPAGSP---DVKKKAPE-PDLPQPDRHPGPAKPEAPGARPAELPS----PASAPTPEQQPPVARSAPLPPSPQASA 450
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 240-407 1.36e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 42.99  E-value: 1.36e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP----------APATSPTTQPAPATSPTTQPAP 309
Cdd:PLN03209   390 PPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPlspyaryedlKPPTSPSPTAPTGVSPSVSSTS 469

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  310 ATSPTTQPAPATSPTTQPAPAT---SPTTQPA--PATSPTTQPTPAtSPTTQPTPATSPTTQPTPATSPTTQPAPATSPT 384
Cdd:PLN03209   470 SVPAVPDTAPATAATDAAAPPPanmRPLSPYAvyDDLKPPTSPSPA-APVGKVAPSSTNEVVKVGNSAPPTALADEQHHA 548

                          170       180
                   ....*....|....*....|....*.
gi 1831519558  385 TQPAPATSPTTQPA---PATSPTTQP 407
Cdd:PLN03209   549 QPKPRPLSPYTMYEdlkPPTSPTPSP 574
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 386-538 1.37e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 42.63  E-value: 1.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  386 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPA-PATSPTTQPAPATSPTTQPAPATS-PTTQPTPGTSPTTQPAPATSP 463
Cdd:PTZ00436   191 EDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAkAAAAPAKAAAPPAKAAAAPAKAAAaPAKAAAPPAKAAAPPAKAAAP 270

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  464 TTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSAT----TQPAPATSATTQPAPATSPTTQPAPATSATTQSV 538
Cdd:PTZ00436   271 PAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAapakAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAPV 349
PRK10819 PRK10819
transport protein TonB; Provisional
 354-469 1.39e-03

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 41.98  E-value: 1.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  354 TTQPTPATSPTTQPTPATSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP 433
Cdd:PRK10819    57 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPK---EAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPRPASPFE 133

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1831519558  434 TTQPApatspttQPTPGTSPTTQPAPATSPTTQPSP 469
Cdd:PRK10819   134 NTAPA-------RPTSSTATAAASKPVTSVSSGPRA 162
PRK12757 PRK12757
cell division protein FtsN; Provisional
 346-435 1.50e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 41.95  E-value: 1.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  346 QPTPATS-PTTQPTPATS-PTTQPTPATSPTTQPAPatspTTQPAPATSPTTQPAPATspTTQPAPATSPttQPAPATSP 423
Cdd:PRK12757    98 QPTQLSEvPYNEQTPQVPrSTVQIQQQAQQQQPPAT----TAQPQPVTPPRQTTAPVQ--PQTPAPVRTQ--PAAPVTQA 169

                           90
                   ....*....|..
gi 1831519558  424 TTQPAPATSPTT 435
Cdd:PRK12757   170 VEAPKVEAEKEK 181
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 384-458 1.52e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 42.81  E-value: 1.52e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  384 TTQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPA 458
Cdd:PRK14965   381 APAPPSAAWGAPTPAAPAAP---PPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGDRWRA 452
PRK12757 PRK12757
cell division protein FtsN; Provisional
 356-445 1.53e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 41.95  E-value: 1.53e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  356 QPTPATS-PTTQPTPATS-PTTQPAPATSPTTQPAPatspTTQPAPATSPTTQPAPATspTTQPAPATSPttQPAPATSP 433
Cdd:PRK12757    98 QPTQLSEvPYNEQTPQVPrSTVQIQQQAQQQQPPAT----TAQPQPVTPPRQTTAPVQ--PQTPAPVRTQ--PAAPVTQA 169

                           90
                   ....*....|..
gi 1831519558  434 TTQPAPATSPTT 445
Cdd:PRK12757   170 VEAPKVEAEKEK 181
valS PRK14900
valyl-tRNA synthetase; Provisional
 365-503 1.53e-03

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 43.06  E-value: 1.53e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  365 TQPTPATSPTTQPAPATSPTT-QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP 443
Cdd:PRK14900   906 SEANSARRDTMEIQNEQKPTQdGPAAEAQPAQENTVVESAEKAVAAVSEAAQQAATAVASGIEKVAEAVRKTVRRSVKKA 985

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  444 TTQPTPGTSPTTQPAPAtspttQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSA 503
Cdd:PRK14900   986 AATRAAMKKKVAKKAPA-----KKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAA 1040
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
313-460 1.54e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 42.48  E-value: 1.54e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  313 PTTQPAPATSPTTQpAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPAT-SPTTQPAPAt 391
Cdd:PRK12373   175 PVVKPGPQIGRYAS-EPAGGLTSLTEEAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPpSEAARPKSA- 252

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  392 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP-APATSPTTQPTPGTSPTTQPAPA 460
Cdd:PRK12373   253 DAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAaAAAAKPALEDKPRPLGIARPGGA 322
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 306-462 1.55e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 42.63  E-value: 1.55e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  306 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP--TTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSP 383
Cdd:PTZ00436   191 EDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAApaKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAP 270

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  384 TTQPAPATSPTTQPaPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAtsPTTQPTPGTSPTTQPAPATS 462
Cdd:PTZ00436   271 PAKAAAPPAKAAAP-PAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAP--PAKAATPPAKAAAPPAKAAA 346
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 483-532 1.55e-03

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 42.78  E-value: 1.55e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  483 ASTQPAPATSGTTQPAPATSATTQPAPATSATTQPA--PATSPTTQPAPATS 532
Cdd:PRK06975   271 QPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPnpPATPPEPPARRGRG 322
PRK12757 PRK12757
cell division protein FtsN; Provisional
 246-325 1.55e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 41.95  E-value: 1.55e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  246 QPAPASSPTTQPAPATSPTTQPAPatspTTQPAPATSPTTQPAPATspTTQPAPATSPttQPAPATSPTTQPAPATSPTT 325
Cdd:PRK12757   110 QTPQVPRSTVQIQQQAQQQQPPAT----TAQPQPVTPPRQTTAPVQ--PQTPAPVRTQ--PAAPVTQAVEAPKVEAEKEK 181
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
338-412 1.55e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 43.07  E-value: 1.55e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  338 APATSPTTQPTPATSPTTQPTPATsPTTQPTPatsPTTQPAPATSPTTQPAPATSPTTQPAPatsPTTQPAPATS 412
Cdd:COG5373     39 EAAEAASAPAEPEPEAAAAATAAA-PEAAPAP---VPEAPAAPPAAAEAPAPAAAAPPAEAE---PAAAPAAASS 106
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 347-430 1.57e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 42.68  E-value: 1.57e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  347 PTPATSPTTQPTPATSPTTQPTPATSPttqpAPATSPTTQPAPATSPTTQPAPATSPTTqPAPATSPTTQPAPATSPTTQ 426
Cdd:NF041121    19 AAPPSPEGPAPTAASQPATPPPPAAPP----SPPGDPPEPPAPEPAPLPAPYPGSLAPP-PPPPPGPAGAAPGAALPVRV 93


                   ....
gi 1831519558  427 PAPA 430
Cdd:NF041121    94 PAPP 97
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
248-383 1.62e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 42.48  E-value: 1.62e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  248 APASSPTT----QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATspttQPAPATSPTTQPAPATSPTTQPAPATSP 323
Cdd:PRK12373   189 EPAGGLTSlteeAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQG----DAAPVPPSEAARPKSADAETNAALKTPA 264

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  324 TTQPAPAtspttqpAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSP 383
Cdd:PRK12373   265 TAPKAAA-------KNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIA 317
PRK12757 PRK12757
cell division protein FtsN; Provisional
 326-395 1.67e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 41.95  E-value: 1.67e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1831519558  326 QPAPATSPTTQPAPATSPTTQP--TPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTT 395
Cdd:PRK12757   110 QTPQVPRSTVQIQQQAQQQQPPatTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKEK 181
motB PRK05996
MotB family protein;
376-458 1.68e-03

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 42.38  E-value: 1.68e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  376 QPAPATSPTTQPAPATSPTTqpAPATSPTTQPAPATSPTTQPAPAT-SPTTQPAPATSPTTQPAPATSPTTQPTPGTSPT 454
Cdd:PRK05996   197 DLLPPGQAREQAQGAKSATA--APATVPQAAPLPQAQPKKAATEEElIADAKKAATGEPAANAAKAAKPEPMPDDQQKEA 274


                   ....
gi 1831519558  455 TQPA 458
Cdd:PRK05996   275 EQLQ 278
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
368-439 1.70e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 41.93  E-value: 1.70e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  368 TPATSPTTQPAPATSPTTQPAPA---TSPTTQ---PAPATSPTTQPAP-ATSPTTQPAPATSPTTQPAPATSPTTQPAP 439
Cdd:PRK13042    18 TGVITTTTQAANATTPSSTKVEApqsTPPSTKveaPQSKPNATTPPSTkVEAPQQTPNATTPSSTKVETPQSPTTKQVP 96
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 386-523 1.74e-03

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 42.58  E-value: 1.74e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  386 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPApatspttqpAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTT 465
Cdd:PRK12678    62 GAAAAAATPAAPAAAARRAARAAAAARQAEQPA---------AEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRE 132

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  466 QPSPATNPttQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSP 523
Cdd:PRK12678   133 RGEAARRG--AARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERG 188
PRK04654 PRK04654
sec-independent translocase; Provisional
 345-456 1.74e-03

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 41.34  E-value: 1.74e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  345 TQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 424
Cdd:PRK04654   103 TSATPVATPLELAHADLSASAQVDAAAGAEPGAGQAHTPVPAPAPVIAQAQPIAPAPHQTLVPAPHDTIVPAPHAAHLPS 182

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1831519558  425 tqpAPATSPTTQPAPATSPTTqPTPGTSPTTQ 456
Cdd:PRK04654   183 ---APATPVSVAPVDAGTSAS-PTPSEPTKIQ 210
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
365-442 1.75e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 42.68  E-value: 1.75e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  365 TQPTPATSPTTQPAPATSPttqPAPATSPTTQPAPatsPTTQPAPATSPTTQPAPATSPTTQPAPatsPTTQPAPATS 442
Cdd:COG5373     38 AEAAEAASAPAEPEPEAAA---AATAAAPEAAPAP---VPEAPAAPPAAAEAPAPAAAAPPAEAE---PAAAPAAASS 106
motB PRK12799
flagellar motor protein MotB; Reviewed
 414-538 1.77e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 42.40  E-value: 1.77e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  414 TTQPAPATSPTtqPAPATSPTTQPAPATSPTTQP-TPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATS 492
Cdd:PRK12799   295 THGTVPVAAVT--PSSAVTQSSAITPSSAAIPSPaVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPGTVALPAAEPV 372

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1831519558  493 GTTQPAPATSATTQPAPATSATTQPAPATSptTQPAPATSATTQSV 538
Cdd:PRK12799   373 NMQPQPMSTTETQQSSTGNITSTANGPTTS--LPAAPASNIPVSPT 416
PRK12757 PRK12757
cell division protein FtsN; Provisional
 239-315 1.78e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 41.95  E-value: 1.78e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  239 VPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT 315
Cdd:PRK12757   105 VPYNEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKEK 181
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 376-422 1.78e-03

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 42.78  E-value: 1.78e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1831519558  376 QPAPATSPTTQPAPATSPTTQPAPATSPTTQPA--PATSPTTQPAPATS 422
Cdd:PRK06975   274 TAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPnpPATPPEPPARRGRG 322
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
359-432 1.78e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 42.68  E-value: 1.78e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  359 PATSPTTQPTPATSPTTQPAPATsPTTQPAPatsPTTQPAPATSPTTQPAPATSPTTQPAPatsPTTQPAPATS 432
Cdd:COG5373     40 AAEAASAPAEPEPEAAAAATAAA-PEAAPAP---VPEAPAAPPAAAEAPAPAAAAPPAEAE---PAAAPAAASS 106
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 302-387 1.79e-03

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 42.77  E-value: 1.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  302 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT--QPAPATSPTTQPTPATSPttqptPATSPTTQPTPATSPTTQPAP 379
Cdd:PLN02217   568 STNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAghLGSPPATPSKIVSPSTSP-----PASHLGSPSTTPSSPESSIKV 642


                   ....*...
gi 1831519558  380 ATSPTTQP 387
Cdd:PLN02217   643 ASTETASP 650
flhF PRK06995
flagellar biosynthesis protein FlhF;
435-548 1.80e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 42.65  E-value: 1.80e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  435 TQPAPATSPTTQPTPGTSPTTQPAPATSPTTQP--SPATNPTTQ--PSVSSSASTQPAPATSGTTQPAPATSATTQPAPA 510
Cdd:PRK06995    54 PAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWlvEHAKRLTAQreQLVARAAAPAAPEAQAPAAPAERAAAENAARRLA 133

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1831519558  511 TSATTQPAPATSPTTQPAPATSAtTQSVPVVTTQTTMG 548
Cdd:PRK06995   134 RAAAAAPRPRVPADAAAAVADAV-KARIERIVNDTVMQ 170
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
357-526 1.81e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 42.34  E-value: 1.81e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  357 PTPATSPTTQPTPATSPT----TQPAPATSPTTQPAPATSPTTQPAPATSPTTQpaPATSPTTQPAPATSPTTQPAPATS 432
Cdd:pfam05539  169 KTAVTTSKTTSWPTEVSHptypSQVTPQSQPATQGHQTATANQRLSSTEPVGTQ--GTTTSSNPEPQTEPPPSQRGPSGS 246

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  433 PttQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPsvsssastQPAPATSGTTQPAPATSATTQPAPATS 512
Cdd:pfam05539  247 P--QHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTATP--------PPTTKRQETGRPTPRPTATTQSGSSPP 316

                          170
                   ....*....|....
gi 1831519558  513 ATTQPAPATSPTTQ 526
Cdd:pfam05539  317 HSSPPGVQANPTTQ 330
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
239-312 1.81e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 42.68  E-value: 1.81e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  239 VPASTSTQPAPASSPTTQPAPATSPTtqPAPATSPT-TQPAPATSPTTQPAPATSPTTQPAPatsPTTQPAPATS 312
Cdd:COG5373     37 LAEAAEAASAPAEPEPEAAAAATAAA--PEAAPAPVpEAPAAPPAAAEAPAPAAAAPPAEAE---PAAAPAAASS 106
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
285-362 1.81e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 42.68  E-value: 1.81e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  285 TQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPatsPTTQPAPATSPTTQPAPATSPTTQPTPatsPTTQPTPATS 362
Cdd:COG5373     38 AEAAEAASAPAEPEPEAAA---AATAAAPEAAPAP---VPEAPAAPPAAAEAPAPAAAAPPAEAE---PAAAPAAASS 106
PRK04654 PRK04654
sec-independent translocase; Provisional
 265-368 1.86e-03

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 41.34  E-value: 1.86e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  265 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 344
Cdd:PRK04654   103 TSATPVATPLELAHADLSASAQVDAAAGAEPGAGQAHTPVPAPAPVIAQAQPIAPAPHQTLVPAPHDTIVPAPHAAHLPS 182

                           90       100
                   ....*....|....*....|....*
gi 1831519558  345 TQPTP-ATSPTTQPTPATSPTTQPT 368
Cdd:PRK04654   183 APATPvSVAPVDAGTSASPTPSEPT 207
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 378-530 1.89e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.85  E-value: 1.89e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  378 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAP-ATSPTTQPTPGTSPttq 456
Cdd:PHA03307   769 AEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSeSSGPARPPGAAARP--- 845

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  457 PAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPaPATSATTQPAPATSPTTQPAPA 530
Cdd:PHA03307   846 PPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAP-PAGAPAPRPRPAPRVKLGPMPP 918
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 294-372 1.89e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 42.36  E-value: 1.89e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  294 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPAtsPTTQPTPATSPTTQPTPATS 372
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAK--PPPTPVARADPRETRVPMSR 196
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
393-542 1.91e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 42.48  E-value: 1.91e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  393 PTTQPAPATSPTTQpAPATSPTT----QPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTspttQPAPATSPTTQPS 468
Cdd:PRK12373   175 PVVKPGPQIGRYAS-EPAGGLTSlteeAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQG----DAAPVPPSEAARP 249

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  469 PATNPTTQPSVSSSASTQPAPAtsgttqpAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVPVVT 542
Cdd:PRK12373   250 KSADAETNAALKTPATAPKAAA-------KNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGI 316
Neisseria_TspB pfam05616
Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis ...
 379-503 1.93e-03

Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis TspB virulence factor proteins.


Pssm-ID: 283306 [Multi-domain]  Cd Length: 517  Bit Score: 42.39  E-value: 1.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  379 PATSPTTQPAPATSptTQPAPATSPTTQPAPATSPTTQPAPA-TSPTTQPAPatSPTTQPAPATSPTTQPTPGTSPttqp 457
Cdd:pfam05616  277 PGYSEKVEVAPGTK--VNMGPVTDRNGNPVQVAATFGRDAQGnTTADVQVIP--RPDLTPASAEAPHAQPLPEVSP---- 348

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1831519558  458 apATSPTTQPSPATNPTTQPSVSSSASTQP--APATSGTTQPAPATSA 503
Cdd:pfam05616  349 --AENPANNPDPDENPGTRPNPEPDPDLNPdaNPDTDGQPGTRPDSPA 394
PRK10672 PRK10672
endolytic peptidoglycan transglycosylase RlpA;
348-432 1.95e-03

endolytic peptidoglycan transglycosylase RlpA;


Pssm-ID: 236733 [Multi-domain]  Cd Length: 361  Bit Score: 41.97  E-value: 1.95e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  348 TPATSPTTQPTPATSPTTQPTPATSPTTQpAPATSPTTQPAPatSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP 427
Cdd:PRK10672   206 TPSVQPAPAPQGDVLPVSNSTLKSEDPTG-APVTSSGFLGAP--TTLAPGVLEGSEPTPTAPSSAPATAPAAAAPQAAAT 282


                   ....*
gi 1831519558  428 APATS 432
Cdd:PRK10672   283 SSSAS 287
PRK12757 PRK12757
cell division protein FtsN; Provisional
 345-415 1.96e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 41.57  E-value: 1.96e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1831519558  345 TQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT 415
Cdd:PRK12757   111 TPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKEK 181
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 421-495 1.97e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 42.19  E-value: 1.97e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  421 TSPTTQPAPATSPTTQPAPATSPTtqPTPGTSPTTQPAPATSPTTQP-SPATNPTTQPSVSSSASTQPAPATSGTT 495
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPT--PSPPASPASGMSAAPASAVEEkSPSEESATATAPESPSTSVPSSGSDAAS 148
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
275-352 1.99e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 42.68  E-value: 1.99e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  275 TQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPatsPTTQPAPATSPTTQPAPATSPTTQPAPatsPTTQPTPATS 352
Cdd:COG5373     38 AEAAEAASAPAEPEPEAAA---AATAAAPEAAPAP---VPEAPAAPPAAAEAPAPAAAAPPAEAE---PAAAPAAASS 106
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 365-474 2.02e-03

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 42.78  E-value: 2.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  365 TQPTPATSPTTQPAPATSPTTQPAPATSPTTqpaPATSPTTQPAPATSPTTQPAPATspttQPAPATSPTTQPAPATSPT 444
Cdd:NF033875    38 TDNVQAAELDTQPGTTTVQPDNPDPQSGSET---PKTAVSEEATVQKDTTSQPTKVE----EVASEKNGAEQSSATPNDT 110

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1831519558  445 T---QPTPGTSPTTQPAPATSPTTQPSPATNPT 474
Cdd:NF033875   111 TnaqQPTVGAEKSAQEQPVVSPETTNEPLGQPT 143
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
310-379 2.02e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 41.93  E-value: 2.02e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  310 ATSPTTQPAPATSPTTQPAPA---TSPTTQ---PAPATSPTTQPTP-ATSPTTQPTPATSPTTQPTPATSPTTQPAP 379
Cdd:PRK13042    20 VITTTTQAANATTPSSTKVEApqsTPPSTKveaPQSKPNATTPPSTkVEAPQQTPNATTPSSTKVETPQSPTTKQVP 96
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
465-551 2.02e-03

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 42.53  E-value: 2.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  465 TQPSPATNPTTqpsvsSSASTQPAPATSGTTQPAPATSAttqPAPATSATTQPAPATSPTTQP--APATSATTQSVPVVT 542
Cdd:PRK11907    28 AEEIVTTTPAT-----STEAEQTTPVESDATEEADNTET---PVAATTAAEAPSSSETAETSDptSEATDTTTSEARTVT 99


                   ....*....
gi 1831519558  543 TQTTMGTSP 551
Cdd:PRK11907   100 PAATETSKP 108
PRK10905 PRK10905
cell division protein DamX; Validated
 328-538 2.07e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 41.85  E-value: 2.07e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  328 APATSPTTQPAPATSPTTQPTPAT--SPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQ-----PAPA 400
Cdd:PRK10905    22 APSTSSSDQTASGEKSIDLAGNATdqANGVQPAPGTTSAEQTAGNTQQDVSLPPISSTPTQGQTPVATDGQqrvevQGDL 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  401 TSPTTQPAPATSPTTQPAPATSPTTqpaPAT-SPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSV 479
Cdd:PRK10905   102 NNALTQPQNQQQLNNVAVNSTLPTE---PATvAPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKP 178

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  480 SSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSV 538
Cdd:PRK10905   179 VAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAGNV 237
Neisseria_TspB pfam05616
Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis ...
 399-529 2.07e-03

Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis TspB virulence factor proteins.


Pssm-ID: 283306 [Multi-domain]  Cd Length: 517  Bit Score: 42.39  E-value: 2.07e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  399 PATSPTTQPAPATSptTQPAPATSPTTQPAPATSPTTQPAPA-TSPTTQ--PTPGTSPTTQPAPATSPTTQPSPATNPTT 475
Cdd:pfam05616  277 PGYSEKVEVAPGTK--VNMGPVTDRNGNPVQVAATFGRDAQGnTTADVQviPRPDLTPASAEAPHAQPLPEVSPAENPAN 354

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  476 QPSVSSSASTQPAPatsgttQPAPATSATTQPapatsaTTQPAPATSPTTQPAP 529
Cdd:pfam05616  355 NPDPDENPGTRPNP------EPDPDLNPDANP------DTDGQPGTRPDSPAVP 396
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 444-518 2.09e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 42.42  E-value: 2.09e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  444 TTQPTPGTSPTTQPAPATSPttqPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPA 518
Cdd:PRK14965   381 APAPPSAAWGAPTPAAPAAP---PPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGDRWRA 452
flhF PRK06995
flagellar biosynthesis protein FlhF;
308-418 2.10e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 42.26  E-value: 2.10e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  308 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPttqptPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQP 387
Cdd:PRK06995    50 ALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAP-----WLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAA 124

                           90       100       110
                   ....*....|....*....|....*....|.
gi 1831519558  388 APATSPTTQPAPATSPTTQPAPATSPTTQPA 418
Cdd:PRK06995   125 AENAARRLARAAAAAPRPRVPADAAAAVADA 155
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
320-389 2.11e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 41.93  E-value: 2.11e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  320 ATSPTTQPAPATSPTTQPAPA---TSPTTQ---PTPATSPTTQPTP-ATSPTTQPTPATSPTTQPAPATSPTTQPAP 389
Cdd:PRK13042    20 VITTTTQAANATTPSSTKVEApqsTPPSTKveaPQSKPNATTPPSTkVEAPQQTPNATTPSSTKVETPQSPTTKQVP 96
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 324-398 2.14e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 42.42  E-value: 2.14e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  324 TTQPAPATSPTTQPAPATSPttqPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPA 398
Cdd:PRK14965   381 APAPPSAAWGAPTPAAPAAP---PPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGDRWRA 452
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 240-403 2.14e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.85  E-value: 2.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAP 319
Cdd:PHA03307   761 PSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPG 840

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  320 ATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPttqPAPATSPTTQPAPATSPTTQPAP 399
Cdd:PHA03307   841 AAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAA---APPAGAPAPRPRPAPRVKLGPMP 917


                   ....
gi 1831519558  400 ATSP 403
Cdd:PHA03307   918 PGGP 921
motB PRK05996
MotB family protein;
316-398 2.20e-03

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 41.99  E-value: 2.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  316 QPAPATSPTTQPAPATSPTTqpAPATSPTTQPTPATSPTTQPTPAT-SPTTQPTPATSPTTQPAPATSPTTQPAPATSPT 394
Cdd:PRK05996   197 DLLPPGQAREQAQGAKSATA--APATVPQAAPLPQAQPKKAATEEElIADAKKAATGEPAANAAKAAKPEPMPDDQQKEA 274


                   ....
gi 1831519558  395 TQPA 398
Cdd:PRK05996   275 EQLQ 278
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
250-319 2.23e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 41.54  E-value: 2.23e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  250 ASSPTTQPAPATSPTTQPAPA---TSPTTQ---PAPATSPTTQPAP-ATSPTTQPAPATSPTTQPAPATSPTTQPAP 319
Cdd:PRK13042    20 VITTTTQAANATTPSSTKVEApqsTPPSTKveaPQSKPNATTPPSTkVEAPQQTPNATTPSSTKVETPQSPTTKQVP 96
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 315-430 2.23e-03

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 42.78  E-value: 2.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  315 TQPAPATSPTTQPAPATSPTTQPAPATSPTTqptPATSPTTQPTPATSPTTQPTPATspttQPAPATSPTTQPAPATSPT 394
Cdd:NF033875    38 TDNVQAAELDTQPGTTTVQPDNPDPQSGSET---PKTAVSEEATVQKDTTSQPTKVE----EVASEKNGAEQSSATPNDT 110

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1831519558  395 T---QPAPATSPTTQPAPATSPTTQPAPATSPtTQPAPA 430
Cdd:NF033875   111 TnaqQPTVGAEKSAQEQPVVSPETTNEPLGQP-TEVAPA 148
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 370-528 2.24e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 41.86  E-value: 2.24e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  370 ATSPTTQPAPATSPTTQPAPATSPttqPAPATSPttqPAPATSPTTQpaPATSPTTQPAPATSPTTQPAPATSPttqptp 449
Cdd:PTZ00436   219 AAAPAKAAAAPAKAAAPPAKAAAA---PAKAAAA---PAKAAAPPAK--AAAPPAKAAAPPAKAAAPPAKAAAP------ 284

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  450 gtspttqPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATtqpAPATSATTQPAPATSPTTQPA 528
Cdd:PTZ00436   285 -------PAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAT---PPAKAAAPPAKAAAAPVGKKA 353
flhF PRK06995
flagellar biosynthesis protein FlhF;
355-458 2.29e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 42.26  E-value: 2.29e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  355 TQPTPATSPTTQPTPATSPTTQPApATSPTTQPAPATSPTTQPAPATSPTTQPApATSPTTQPAPATSPTTQPAPATSPT 434
Cdd:PRK06995    54 PAAAAPAAAQPPPAAAPAAVSRPA-APAAEPAPWLVEHAKRLTAQREQLVARAA-APAAPEAQAPAAPAERAAAENAARR 131

                           90       100
                   ....*....|....*....|....
gi 1831519558  435 TQPAPATSPTTQPTPGTSPTTQPA 458
Cdd:PRK06995   132 LARAAAAAPRPRVPADAAAAVADA 155
PRK10819 PRK10819
transport protein TonB; Provisional
 304-408 2.33e-03

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 41.21  E-value: 2.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  304 TTQPAPATSPTTQPAPATSPTTQPAPATSPttqPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSP 383
Cdd:PRK10819    57 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPK---EAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPRPASPFE 133

                           90       100
                   ....*....|....*....|....*
gi 1831519558  384 TTQPAPATSPTTQPAPATSPTTQPA 408
Cdd:PRK10819   134 NTAPARPTSSTATAAASKPVTSVSS 158
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 362-447 2.43e-03

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 42.38  E-value: 2.43e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  362 SPTTQPTPATSPTTQPAPATSPTTQPAPATSPTT--QPAPATSPTTQPAPATSPttqpaPATSPTTQPAPATSPTTQPAP 439
Cdd:PLN02217   568 STNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAghLGSPPATPSKIVSPSTSP-----PASHLGSPSTTPSSPESSIKV 642


                   ....*...
gi 1831519558  440 ATSPTTQP 447
Cdd:PLN02217   643 ASTETASP 650
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 295-410 2.43e-03

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 42.39  E-value: 2.43e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  295 TQPAPATSPTTQPAPATSPTTQPAPATSPTTqpaPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSpT 374
Cdd:NF033875    38 TDNVQAAELDTQPGTTTVQPDNPDPQSGSET---PKTAVSEEATVQKDTTSQPTKVEEVASEKNGAEQSSATPNDTTN-A 113

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1831519558  375 TQPAPATSPTTQPAPATSPTTQPAPATSPtTQPAPA 410
Cdd:NF033875   114 QQPTVGAEKSAQEQPVVSPETTNEPLGQP-TEVAPA 148
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 285-400 2.43e-03

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 42.39  E-value: 2.43e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  285 TQPAPATSPTTQPAPATSPTTQPAPATSPTTqpaPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSpT 364
Cdd:NF033875    38 TDNVQAAELDTQPGTTTVQPDNPDPQSGSET---PKTAVSEEATVQKDTTSQPTKVEEVASEKNGAEQSSATPNDTTN-A 113

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1831519558  365 TQPTPATSPTTQPAPATSPTTQPAPATSPtTQPAPA 400
Cdd:NF033875   114 QQPTVGAEKSAQEQPVVSPETTNEPLGQP-TEVAPA 148
PRK10672 PRK10672
endolytic peptidoglycan transglycosylase RlpA;
240-332 2.44e-03

endolytic peptidoglycan transglycosylase RlpA;


Pssm-ID: 236733 [Multi-domain]  Cd Length: 361  Bit Score: 41.97  E-value: 2.44e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQpAPATSPTTQPAPatSPTTQPAPATSPTTQPAPATSPTTQPAP 319
Cdd:PRK10672   198 PDLSGGMGTPSVQPAPAPQGDVLPVSNSTLKSEDPTG-APVTSSGFLGAP--TTLAPGVLEGSEPTPTAPSSAPATAPAA 274

                           90
                   ....*....|...
gi 1831519558  320 ATSPTTQPAPATS 332
Cdd:PRK10672   275 AAPQAAATSSSAS 287
PRK11633 PRK11633
cell division protein DedD; Provisional
 426-533 2.48e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 41.14  E-value: 2.48e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  426 QPAPATSPTTQPAPatsptTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPatsaTT 505
Cdd:PRK11633    51 DEPDMMPAATQALP-----TQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKP----KP 121

                           90       100
                   ....*....|....*....|....*...
gi 1831519558  506 QPAPATSATTQPAPATSPTTQPAPATSA 533
Cdd:PRK11633   122 QQKVEAPPAPKPEPKPVVEEKAAPTGKA 149
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 395-541 2.49e-03

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 42.39  E-value: 2.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  395 TQPAPATSPTTQPAPATSPTTQPAPATSPTTqpaPATSPTTQPAPATSPTTQPTpgtsPTTQPAPATSPTTQPSPATNPT 474
Cdd:NF033875    38 TDNVQAAELDTQPGTTTVQPDNPDPQSGSET---PKTAVSEEATVQKDTTSQPT----KVEEVASEKNGAEQSSATPNDT 110

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  475 T---QPSVSSSASTQPAPATSGTTQPAPaTSATTQPAPA----TSATTQPAPATSPTTQPAPATSATTQSVPVV 541
Cdd:NF033875   111 TnaqQPTVGAEKSAQEQPVVSPETTNEP-LGQPTEVAPAeneaNKSTSIPKEFETPDVDKAVDEAKKDPNITVV 183
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 338-392 2.50e-03

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 42.40  E-value: 2.50e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  338 APATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPA--PATSPTTQPAPATS 392
Cdd:PRK06975   266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPnpPATPPEPPARRGRG 322
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 408-462 2.59e-03

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 42.01  E-value: 2.59e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  408 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP--TPGTSPTTQPAPATS 462
Cdd:PRK06975   266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPpnPPATPPEPPARRGRG 322
PHA01929 PHA01929
putative scaffolding protein
 312-418 2.59e-03

putative scaffolding protein


Pssm-ID: 177328  Cd Length: 306  Bit Score: 41.58  E-value: 2.59e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  312 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPAtsPTTQPAPATSPTTQPAPAT 391
Cdd:PHA01929    20 PPAAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQPVPTSAMTPHVVQQAPAQPA--PAAPPAAGAALPEALEVPP 97

                           90       100
                   ....*....|....*....|....*..
gi 1831519558  392 SPTTQPAPATSPTTQPAPATSPTTQPA 418
Cdd:PHA01929    98 PPAFTPNGEIVGTLAGNLEGDPQLAPS 124
PRK14963 PRK14963
DNA polymerase III subunits gamma and tau; Provisional
 247-333 2.66e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184927 [Multi-domain]  Cd Length: 504  Bit Score: 42.13  E-value: 2.66e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  247 PAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSptTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQ 326
Cdd:PRK14963   346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP--TAAATAAGA---PLPDFDPRPRGPPAPEPARSAEAPPLVAPA 420


                   ....*..
gi 1831519558  327 PAPATSP 333
Cdd:PRK14963   421 AAPAGLA 427
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 342-427 2.69e-03

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 42.00  E-value: 2.69e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  342 SPTTQPTPATSPTTQPTPATSPTTQPTPATSPTT--QPAPATSPTTQPAPATSPttqpaPATSPTTQPAPATSPTTQPAP 419
Cdd:PLN02217   568 STNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAghLGSPPATPSKIVSPSTSP-----PASHLGSPSTTPSSPESSIKV 642


                   ....*...
gi 1831519558  420 ATSPTTQP 427
Cdd:PLN02217   643 ASTETASP 650
PRK04654 PRK04654
sec-independent translocase; Provisional
 275-378 2.70e-03

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 40.95  E-value: 2.70e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  275 TQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPT 354
Cdd:PRK04654   103 TSATPVATPLELAHADLSASAQVDAAAGAEPGAGQAHTPVPAPAPVIAQAQPIAPAPHQTLVPAPHDTIVPAPHAAHLPS 182

                           90       100
                   ....*....|....*....|....*
gi 1831519558  355 TQPTP-ATSPTTQPTPATSPTTQPA 378
Cdd:PRK04654   183 APATPvSVAPVDAGTSASPTPSEPT 207
PHA03325 PHA03325
nuclear-egress-membrane-like protein; Provisional
 240-395 2.80e-03

nuclear-egress-membrane-like protein; Provisional


Pssm-ID: 223044  Cd Length: 418  Bit Score: 41.79  E-value: 2.80e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPttqPAPATSPT--TQPAPATSPTTQP 317
Cdd:PHA03325   259 SSAFMLNSSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLP---PPPVRRPRvkHPEAGKEEPDGAR 335

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  318 APATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPA-TSPTTQPAPATSPTTQPAPATSPTT 395
Cdd:PHA03325   336 NAEAKEPAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAASSFLEDDDFGSPPLdLTTSLRHMPSPSVTSAPEPPSIPLT 414
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
245-343 2.83e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 41.71  E-value: 2.83e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  245 TQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAtspttqpAPATSPTTQPAPATSPTTQPAPATSPT 324
Cdd:PRK12373   226 TEVPLLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAA-------KNAKAPEAQPVSGTAAAEPAPKEAAKA 298

                           90
                   ....*....|....*....
gi 1831519558  325 TQPAPATSPTTQPAPATSP 343
Cdd:PRK12373   299 AAAAAKPALEDKPRPLGIA 317
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 275-390 2.85e-03

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 42.39  E-value: 2.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  275 TQPAPATSPTTQPAPATSPTTQPAPATSPTTqpaPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSpT 354
Cdd:NF033875    38 TDNVQAAELDTQPGTTTVQPDNPDPQSGSET---PKTAVSEEATVQKDTTSQPTKVEEVASEKNGAEQSSATPNDTTN-A 113

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1831519558  355 TQPTPATSPTTQPTPATSPTTQPAPATSPtTQPAPA 390
Cdd:NF033875   114 QQPTVGAEKSAQEQPVVSPETTNEPLGQP-TEVAPA 148
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 352-437 2.88e-03

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 42.00  E-value: 2.88e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  352 SPTTQPTPATSPTTQPTPATSPTTQPAPATSPTT--QPAPATSPTTQPAPATSPttqpaPATSPTTQPAPATSPTTQPAP 429
Cdd:PLN02217   568 STNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAghLGSPPATPSKIVSPSTSP-----PASHLGSPSTTPSSPESSIKV 642


                   ....*...
gi 1831519558  430 ATSPTTQP 437
Cdd:PLN02217   643 ASTETASP 650
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
348-429 2.88e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 41.54  E-value: 2.88e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  348 TPATSPTTQPTPATSPTTqpTPATSPTTQPaPATSPTTqPAPATSPTTQPAP-ATSPTTQPAPATSPTTQPAPATSPTTQ 426
Cdd:PRK13042    18 TGVITTTTQAANATTPSS--TKVEAPQSTP-PSTKVEA-PQSKPNATTPPSTkVEAPQQTPNATTPSSTKVETPQSPTTK 93


                   ...
gi 1831519558  427 PAP 429
Cdd:PRK13042    94 QVP 96
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
375-452 2.91e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 42.29  E-value: 2.91e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  375 TQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPatsPTTQPAPATSPTTQPAPATSPTTQPAPatsPTTQPTPGTS 452
Cdd:COG5373     38 AEAAEAASAPAEPEPEAAA---AATAAAPEAAPAP---VPEAPAAPPAAAEAPAPAAAAPPAEAE---PAAAPAAASS 106
motB PRK05996
MotB family protein;
386-467 2.92e-03

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 41.61  E-value: 2.92e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  386 QPAPATSPTTQPAPATSPTTqpAPATSPTTQPAPATSPTTQPAPAT-SPTTQPAPATSPTTQPTPGTSPTTQPAPATSPT 464
Cdd:PRK05996   197 DLLPPGQAREQAQGAKSATA--APATVPQAAPLPQAQPKKAATEEElIADAKKAATGEPAANAAKAAKPEPMPDDQQKEA 274


                   ...
gi 1831519558  465 TQP 467
Cdd:PRK05996   275 EQL 277
motB PRK05996
MotB family protein;
396-483 2.92e-03

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 41.61  E-value: 2.92e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  396 QPAPATSPTTQPAPATSPTTqpAPATSPTTQPAPATSPTTQPAPAT-SPTTQPTPGTSPTTQPAPATSPTTQPSPATNPT 474
Cdd:PRK05996   197 DLLPPGQAREQAQGAKSATA--APATVPQAAPLPQAQPKKAATEEElIADAKKAATGEPAANAAKAAKPEPMPDDQQKEA 274


                   ....*....
gi 1831519558  475 TQPSVSSSA 483
Cdd:PRK05996   275 EQLQAAIAQ 283
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
244-353 2.93e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 41.71  E-value: 2.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  244 STQPAPASSPTTQPAPATSPTTQPAPATSPTtqPAPAtSPTTQPAPAtSPTTQPA---PATSPTTQPAPATSPTTQPAPA 320
Cdd:PRK12373   209 SKALAEDIGDTVKRIDGTEVPLLAPWQGDAA--PVPP-SEAARPKSA-DAETNAAlktPATAPKAAAKNAKAPEAQPVSG 284

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1831519558  321 TSPTTQPAPATSPTTQPAPATSPTTQPTPATSP 353
Cdd:PRK12373   285 TAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIA 317
PRK10819 PRK10819
transport protein TonB; Provisional
 344-449 2.97e-03

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 40.82  E-value: 2.97e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  344 TTQPTPATSPTTQPTPATSPTTQPTPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP----TTQPAP 419
Cdd:PRK10819    57 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPK---EAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPveprPASPFE 133

                           90       100       110
                   ....*....|....*....|....*....|
gi 1831519558  420 ATSPTtQPAPATSPTTQPAPATSPTTQPTP 449
Cdd:PRK10819   134 NTAPA-RPTSSTATAAASKPVTSVSSGPRA 162
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
305-382 2.99e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 41.91  E-value: 2.99e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  305 TQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPatsPTTQPTPATSPTTQPTPATSPTTQPTPatsPTTQPAPATS 382
Cdd:COG5373     38 AEAAEAASAPAEPEPEAAA---AATAAAPEAAPAP---VPEAPAAPPAAAEAPAPAAAAPPAEAE---PAAAPAAASS 106
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 445-515 3.04e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 41.42  E-value: 3.04e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  445 TQPTPGTSPTTQPA--PATSPTTQPSPATNPTTQPSVSSSASTQP-APATSGTTQPAPATSATTQPAPATSATT 515
Cdd:TIGR00601   75 SKPKTGTGKVAPPAatPTSAPTPTPSPPASPASGMSAAPASAVEEkSPSEESATATAPESPSTSVPSSGSDAAS 148
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 340-429 3.06e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 41.91  E-value: 3.06e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  340 ATSPTTQPTPATSPTTQPTPATSPttQPTPATSPTTQPAPATSPTTQPAPATSPtTQPAPATSPTTQPAPATSPTTQPAP 419
Cdd:NF041121    16 GRAAAPPSPEGPAPTAASQPATPP--PPAAPPSPPGDPPEPPAPEPAPLPAPYP-GSLAPPPPPPPGPAGAAPGAALPVR 92

                           90
                   ....*....|
gi 1831519558  420 ATSPTTQPAP 429
Cdd:NF041121    93 VPAPPALPNP 102
PRK04654 PRK04654
sec-independent translocase; Provisional
 245-359 3.06e-03

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 40.57  E-value: 3.06e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  245 TQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 324
Cdd:PRK04654   103 TSATPVATPLELAHADLSASAQVDAAAGAEPGAGQAHTPVPAPAPVIAQAQPIAPAPHQTLVPAPHDTIVPAPHAAHLPS 182

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1831519558  325 tqpAPATSPTTQPAPATSPTTQPTPATSPTTQPTP 359
Cdd:PRK04654   183 ---APATPVSVAPVDAGTSASPTPSEPTKIQEKQP 214
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 272-357 3.11e-03

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 42.00  E-value: 3.11e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  272 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT--QPAPATSPTTQPAPATSPttqpaPATSPTTQPAPATSPTTQPTP 349
Cdd:PLN02217   568 STNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAghLGSPPATPSKIVSPSTSP-----PASHLGSPSTTPSSPESSIKV 642


                   ....*...
gi 1831519558  350 ATSPTTQP 357
Cdd:PLN02217   643 ASTETASP 650
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 294-362 3.14e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 42.04  E-value: 3.14e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  294 TTQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPAtSPTTQPTPATSPTTQPTPATS 362
Cdd:PRK14965   381 APAPPSAAWGAPTPAAPAAP---PPAAAPPVPPAAPARPAAARPAPA-PAPPAAAAPPARSADPAAAAS 445
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
328-402 3.20e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 41.91  E-value: 3.20e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  328 APATSPTTQPAPATSPTTQPTPATsPTTQPTPatsPTTQPTPATSPTTQPAPATSPTTQPAPatsPTTQPAPATS 402
Cdd:COG5373     39 EAAEAASAPAEPEPEAAAAATAAA-PEAAPAP---VPEAPAAPPAAAEAPAPAAAAPPAEAE---PAAAPAAASS 106
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 325-448 3.21e-03

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 42.01  E-value: 3.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  325 TQPAPATSPTTQPAPATSPTTQPTPATSPTTqptPATSPTTQPTPATSPTTQPAPAtsptTQPAPATSPTTQPAPATSPT 404
Cdd:NF033875    38 TDNVQAAELDTQPGTTTVQPDNPDPQSGSET---PKTAVSEEATVQKDTTSQPTKV----EEVASEKNGAEQSSATPNDT 110

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1831519558  405 T---QPAPATSPTTQPAPATSPTTQPAPATSPtTQPAPATSPTTQPT 448
Cdd:NF033875   111 TnaqQPTVGAEKSAQEQPVVSPETTNEPLGQP-TEVAPAENEANKST 156
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
281-426 3.22e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 41.57  E-value: 3.22e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  281 TSPTTQPAPATSPT--TQPAPATSPTT---QPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTT 355
Cdd:pfam05539  175 SKTTSWPTEVSHPTypSQVTPQSQPATqghQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSPQHPPSTT 254

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  356 QP---TPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSP--TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQ 426
Cdd:pfam05539  255 SQdqsTTGDGQEHTQRRKTPPATSNRRSPHSTATPPPTTKRqeTGRPTPRPTATTQSGSSPPHSSPPGVQANPTTQ 330
PHA03132 PHA03132
thymidine kinase; Provisional
 327-535 3.24e-03

thymidine kinase; Provisional


Pssm-ID: 222997 [Multi-domain]  Cd Length: 580  Bit Score: 41.67  E-value: 3.24e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  327 PAPATSPTTQPAPATSPTTqPTPATSPTTQPTPATSPTTQPTPATSPTTQPaPATSPTTQPAPATSPTTQPAPA--TSPT 404
Cdd:PHA03132    56 PPRETGSGGGVATSTIYTV-PRPPRGPEQTLDKPDSLPASRELPPGPTPVP-PGGFRGASSPRLGADSTSPRFLyqVNFP 133

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  405 TQPAP--ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSS- 481
Cdd:PHA03132   134 VILAPigESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKGFSKHKTHKRSEFSGLTKKAARKRKGSFVFKPSQLKEl 213

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  482 SASTQPAPATSGTTQPAPATSATTQPapatsattQPAPATSPTTQPAPATSATT 535
Cdd:PHA03132   214 SGSLKNLLHLDDSAETDPATRQVPVP--------VHVLYPPLLTEYVPYKPACF 259
PHA03255 PHA03255
BDLF3; Provisional
 371-524 3.34e-03

BDLF3; Provisional


Pssm-ID: 165513 [Multi-domain]  Cd Length: 234  Bit Score: 40.66  E-value: 3.34e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  371 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQpAPATSPTTQPAPATSPTTQPTPG 450
Cdd:PHA03255    25 TSSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNTTT-VTSTGTTVTPVPTTSNASTINVT 103

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  451 TSPTTQPAPATSpttqpspaTNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPT 524
Cdd:PHA03255   104 TKVTAQNITATE--------AGTGTSTGVTSNVTTRSSSTTSATTRITNATTLAPTLSSKGTSNATKTTAELPT 169
PHA01929 PHA01929
putative scaffolding protein
 256-343 3.37e-03

putative scaffolding protein


Pssm-ID: 177328  Cd Length: 306  Bit Score: 41.19  E-value: 3.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  256 QPAPATSPTTQPAPATSPTtQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT 335
Cdd:PHA01929    18 NVPPAAAPTPQPNPVIQPQ-APVQPGQPGA-PQQLAIPTQQPQPVPTSAMTPHVVQQAPAQPAPAAPPAAGAALPEALEV 95


                   ....*...
gi 1831519558  336 QPAPATSP 343
Cdd:PHA01929    96 PPPPAFTP 103
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 464-554 3.39e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 41.77  E-value: 3.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  464 TTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPAtSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVPVVTT 543
Cdd:PRK07994   363 APLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAV-PPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKS 441

                           90
                   ....*....|.
gi 1831519558  544 QTTMGTSPTTA 554
Cdd:PRK07994   442 EPAAASRARPV 452
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 400-533 3.40e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 42.00  E-value: 3.40e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  400 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQP-SPATNPTTQP- 477
Cdd:PRK08691   357 AFAPLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAGPvSNQENNDVPPw 436

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1831519558  478 -----SVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSA 533
Cdd:PRK08691   437 edapdEAQTAAGTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQAT 497
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
270-339 3.53e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 41.16  E-value: 3.53e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  270 ATSPTTQPAPATSPTTQPAPA---TSPTTQ---PAPATSPTTQPAP-ATSPTTQPAPATSPTTQPAPATSPTTQPAP 339
Cdd:PRK13042    20 VITTTTQAANATTPSSTKVEApqsTPPSTKveaPQSKPNATTPPSTkVEAPQQTPNATTPSSTKVETPQSPTTKQVP 96
Agg_substance NF033875
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ...
 265-380 3.61e-03

LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.


Pssm-ID: 411439 [Multi-domain]  Cd Length: 1306  Bit Score: 42.01  E-value: 3.61e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  265 TQPAPATSPTTQPAPATSPTTQPAPATSPTTqpaPATSPTTQPAPATSPTTQPAPATspttQPAPATSPTTQPAPATSPT 344
Cdd:NF033875    38 TDNVQAAELDTQPGTTTVQPDNPDPQSGSET---PKTAVSEEATVQKDTTSQPTKVE----EVASEKNGAEQSSATPNDT 110

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1831519558  345 T---QPTPATSPTTQPTPATSPTTQPTPATSPtTQPAPA 380
Cdd:NF033875   111 TnaqQPTVGAEKSAQEQPVVSPETTNEPLGQP-TEVAPA 148
PHA03247 PHA03247
large tegument protein UL36; Provisional
 357-554 3.65e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 3.65e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  357 PTPATSPTTQPTPATSpttQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPttqPAPATSPttqPAPATSPTTQ 436
Cdd:PHA03247   257 PPPVVGEGADRAPETA---RGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALP---APPDPPP---PAPAGDAEEE 327

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  437 PA-----PATSPTTQPT------------PGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAP 499
Cdd:PHA03247   328 DDedgamEVVSPLPRPRqhyplgfpkrrrPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRP 407

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  500 ATsATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVPVVTTQTTMGTSPTTA 554
Cdd:PHA03247   408 AA-PVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEP 461
COG5099 COG5099
RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal ...
 242-487 3.71e-03

RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis];


Pssm-ID: 227430 [Multi-domain]  Cd Length: 777  Bit Score: 41.66  E-value: 3.71e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  242 STSTQPAP-ASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPApatSPTTQPAPA 320
Cdd:COG5099     81 SGSWSVAIsSSTSGSQSLLMELPSSSFNPSTSSRNKSNSALSSTQQGNANSSVTLSSSTASSMFNSNK---LPLPNPNHS 157

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  321 TSPTTQPAPA----TSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPA-------TSPTTQPAPATSPTTQ--- 386
Cdd:COG5099    158 NSATTNQSGSsfinTPASSSSQPLTNLVVSSIKRFPYLTSLSPFFNYLIDPSSDsatasadTSPSFNPPPNLSPNNLfst 237

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  387 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS---PTTQPTPGTSPTTQPAPATSP 463
Cdd:COG5099    238 SDLSPLPDTQSVENNIILNSSSSINELTSIYGSVPSIRNLRGLNSALVSFLNVSSSslaFSALNGKEVSPTGSPSTRSFA 317

                          250       260
                   ....*....|....*....|....
gi 1831519558  464 TTQPSPATNPTTQPSVSSSASTQP 487
Cdd:COG5099    318 RVLPKSSPNNLLTEILTTGVNPPQ 341
PRK12757 PRK12757
cell division protein FtsN; Provisional
 396-475 3.83e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 40.80  E-value: 3.83e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  396 QPAPATSPTTQPAPATSPTTQPAPatspTTQPAPATSPTTQPAPATSPTTQPTPgtspTTQPAPATSPTTQPSPATNPTT 475
Cdd:PRK12757   110 QTPQVPRSTVQIQQQAQQQQPPAT----TAQPQPVTPPRQTTAPVQPQTPAPVR----TQPAAPVTQAVEAPKVEAEKEK 181
PRK12757 PRK12757
cell division protein FtsN; Provisional
 276-355 3.90e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 40.80  E-value: 3.90e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  276 QPAPATSPTTQPAPATSPTTQPAPatspTTQPAPATSPTTQPAPATspTTQPAPATSPttQPAPATSPTTQPTPATSPTT 355
Cdd:PRK12757   110 QTPQVPRSTVQIQQQAQQQQPPAT----TAQPQPVTPPRQTTAPVQ--PQTPAPVRTQ--PAAPVTQAVEAPKVEAEKEK 181
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
295-372 3.92e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 41.52  E-value: 3.92e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  295 TQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPatsPTTQPAPATSPTTQPTPATSPTTQPTPatsPTTQPTPATS 372
Cdd:COG5373     38 AEAAEAASAPAEPEPEAAA---AATAAAPEAAPAP---VPEAPAAPPAAAEAPAPAAAAPPAEAE---PAAAPAAASS 106
PRK12757 PRK12757
cell division protein FtsN; Provisional
 256-335 3.94e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 40.80  E-value: 3.94e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  256 QPAPATSPTTQPAPATSPTTQPAPatspTTQPAPATSPTTQPAPATspTTQPAPATSPttQPAPATSPTTQPAPATSPTT 335
Cdd:PRK12757   110 QTPQVPRSTVQIQQQAQQQQPPAT----TAQPQPVTPPRQTTAPVQ--PQTPAPVRTQ--PAAPVTQAVEAPKVEAEKEK 181
PRK12757 PRK12757
cell division protein FtsN; Provisional
 266-345 3.94e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 40.80  E-value: 3.94e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  266 QPAPATSPTTQPAPATSPTTQPAPatspTTQPAPATSPTTQPAPATspTTQPAPATSPttQPAPATSPTTQPAPATSPTT 345
Cdd:PRK12757   110 QTPQVPRSTVQIQQQAQQQQPPAT----TAQPQPVTPPRQTTAPVQ--PQTPAPVRTQ--PAAPVTQAVEAPKVEAEKEK 181
PHA03255 PHA03255
BDLF3; Provisional
 311-454 3.96e-03

BDLF3; Provisional


Pssm-ID: 165513 [Multi-domain]  Cd Length: 234  Bit Score: 40.66  E-value: 3.96e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  311 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTpATSPTTQPAPATSPTTQPAPA 390
Cdd:PHA03255    25 TSSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNTTTVT-STGTTVTPVPTTSNASTINVT 103

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  391 TSPTTQPAPATSP--TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPT 454
Cdd:PHA03255   104 TKVTAQNITATEAgtGTSTGVTSNVTTRSSSTTSATTRITNATTLAPTLSSKGTSNATKTTAELPT 169
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 298-470 4.00e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.70  E-value: 4.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  298 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTP-ATSPTTQPTPATSPttq 376
Cdd:PHA03307   769 AEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSeSSGPARPPGAAARP--- 845

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  377 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPaPATSPTTQPAPATSPTTQPTPGTSPTT- 455
Cdd:PHA03307   846 PPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAP-PAGAPAPRPRPAPRVKLGPMPPGGPDPr 924

                          170
                   ....*....|....*....
gi 1831519558  456 ----QPAPATSPTTQPSPA 470
Cdd:PHA03307   925 ggfrRVPPGDLHTPAPSAA 943
PRK14963 PRK14963
DNA polymerase III subunits gamma and tau; Provisional
 277-363 4.01e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184927 [Multi-domain]  Cd Length: 504  Bit Score: 41.36  E-value: 4.01e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  277 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSptTQPAPATSPttqPAPATSPTTQPAPATSPTTQPTPATSPTTQ 356
Cdd:PRK14963   346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP--TAAATAAGA---PLPDFDPRPRGPPAPEPARSAEAPPLVAPA 420


                   ....*..
gi 1831519558  357 PTPATSP 363
Cdd:PRK14963   421 AAPAGLA 427
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 274-352 4.03e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.21  E-value: 4.03e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  274 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAtsPTTQPAPATSPTTQPTPATS 352
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAK--PPPTPVARADPRETRVPMSR 196
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
378-476 4.03e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 41.27  E-value: 4.03e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  378 APATSPTTQPAPAT---SPTTQPAPATSPTTQPAPATSPTTQPaPATSPTTQPAPATSPTTQPAPATSP-TTQPTPG-TS 452
Cdd:PRK13335    56 AGANSATTQAANTRqerTPKLEKAPNTNEEKTSASKIEKISQP-KQEEQKSLNISATPAPKQEQSQTTTeSTTPKTKvTT 134

                           90       100
                   ....*....|....*....|....
gi 1831519558  453 PTTQPAPATSPTTQPSPATNPTTQ 476
Cdd:PRK13335   135 PPSTNTPQPMQSTKSDTPQSPTIK 158
PRK10819 PRK10819
transport protein TonB; Provisional
 245-348 4.03e-03

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 40.44  E-value: 4.03e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  245 TQPAPASSPTTQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 324
Cdd:PRK10819    58 LEPPQAVQPPPEPVVEPEPEPEPIPEPPK---EAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPRPASPFEN 134

                           90       100
                   ....*....|....*....|....
gi 1831519558  325 TQPAPATSPTTQPAPATSPTTQPT 348
Cdd:PRK10819   135 TAPARPTSSTATAAASKPVTSVSS 158
PRK14963 PRK14963
DNA polymerase III subunits gamma and tau; Provisional
 257-343 4.08e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184927 [Multi-domain]  Cd Length: 504  Bit Score: 41.36  E-value: 4.08e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  257 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSptTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQ 336
Cdd:PRK14963   346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP--TAAATAAGA---PLPDFDPRPRGPPAPEPARSAEAPPLVAPA 420


                   ....*..
gi 1831519558  337 PAPATSP 343
Cdd:PRK14963   421 AAPAGLA 427
motB PRK05996
MotB family protein;
286-368 4.08e-03

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 41.22  E-value: 4.08e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  286 QPAPATSPTTQPAPATSPTTqpAPATSPTTQPAPATSPTTQPAPAT-SPTTQPAPATSPTTQPTPATSPTTQPTPATSPT 364
Cdd:PRK05996   197 DLLPPGQAREQAQGAKSATA--APATVPQAAPLPQAQPKKAATEEElIADAKKAATGEPAANAAKAAKPEPMPDDQQKEA 274


                   ....
gi 1831519558  365 TQPT 368
Cdd:PRK05996   275 EQLQ 278
PRK10819 PRK10819
transport protein TonB; Provisional
 394-509 4.11e-03

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 40.44  E-value: 4.11e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  394 TTQPAPATSPTTQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNP 473
Cdd:PRK10819    57 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPK---EAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPRPASPFE 133

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1831519558  474 TTQPSvsssastQPAPATSGTTQPAPATSATTQPAP 509
Cdd:PRK10819   134 NTAPA-------RPTSSTATAAASKPVTSVSSGPRA 162
DUF2486 pfam10667
Protein of unknown function (DUF2486); This family is made up of members from various ...
 354-499 4.13e-03

Protein of unknown function (DUF2486); This family is made up of members from various Burkholderia spp. The function is unknown.


Pssm-ID: 402345 [Multi-domain]  Cd Length: 251  Bit Score: 40.47  E-value: 4.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  354 TTQPTPATSPTTQPTPATSPTTQPAPAtSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATS-PTTQPAPATS 432
Cdd:pfam10667   18 QGHPVQARPPAAGPQASHEAAGFDARR-EPGFKAEPVLAPQPVLTAAQVAAVQAAHAAARDHAQAPGFAaPVHAPEPAEP 96

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  433 PTTQPAPATSPTTQPTPGTSPTTQPAPATSPttQPSPATNPTTQPSVSSSASTQPAP-ATSGTTQPAP 499
Cdd:pfam10667   97 AAAAPAPHTAQPSHPADHEHPKKRARAAHAA--QPRHAHDDGYVPAAGVFDRAEPATpLTAGSTVPPD 162
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 254-332 4.17e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 41.21  E-value: 4.17e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  254 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAtsPTTQPAPATSPTTQPAPATS 332
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAK--PPPTPVARADPRETRVPMSR 196
PHA03255 PHA03255
BDLF3; Provisional
 291-434 4.18e-03

BDLF3; Provisional


Pssm-ID: 165513 [Multi-domain]  Cd Length: 234  Bit Score: 40.66  E-value: 4.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  291 TSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTpATSPTTQPTPATSPTTQPTPA 370
Cdd:PHA03255    25 TSSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNTTTVT-STGTTVTPVPTTSNASTINVT 103

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  371 TSPTTQPAPATSP--TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 434
Cdd:PHA03255   104 TKVTAQNITATEAgtGTSTGVTSNVTTRSSSTTSATTRITNATTLAPTLSSKGTSNATKTTAELPT 169
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
340-419 4.32e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 40.77  E-value: 4.32e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  340 ATSPTTQPTPATSPTTqpTPATSPttQPTPATSPTTQPAPATSPTTQPAP-ATSPTTQPAPATSPTTQPAPATSPTTQPA 418
Cdd:PRK13042    20 VITTTTQAANATTPSS--TKVEAP--QSTPPSTKVEAPQSKPNATTPPSTkVEAPQQTPNATTPSSTKVETPQSPTTKQV 95


                   .
gi 1831519558  419 P 419
Cdd:PRK13042    96 P 96
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 365-556 4.46e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 41.37  E-value: 4.46e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  365 TQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 444
Cdd:COG3266    159 EEQLLLLALQDIQGTLQALGAVAALLGLRKAEEALALRAGSAAADALALLLLLLASALGEAVAAAAELAALALLAAGAAE 238

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  445 TQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSS-SASTQPAPATSGTTQPAPATSATTQPA--PATSATTQPAPAT 521
Cdd:COG3266    239 VLTARLVLLLLIIGSALKAPSQASSASAPATTSLGEQqEVSLPPAVAAQPAAAAAAQPSAVALPAapAAAAAAAAPAEAA 318

                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 1831519558  522 SPTTQPAPATSATTQS----VPVVTTQTTMGTSPTTAGI 556
Cdd:COG3266    319 APQPTAAKPVVTETAApaapAPEAAAAAAAPAAPAVAKK 357
PRK13914 PRK13914
invasion associated endopeptidase;
264-492 4.46e-03

invasion associated endopeptidase;


Pssm-ID: 237555 [Multi-domain]  Cd Length: 481  Bit Score: 41.33  E-value: 4.46e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  264 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP 343
Cdd:PRK13914   140 TDKVTSTPVAPTQEVKKETTTQQAAPAAETKTEVKQTTQATTPAPKVAETKETPVVDQNATTHAVKSGDTIWALSVKYGV 219

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  344 TTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAP-ATS 422
Cdd:PRK13914   220 SVQDIMSWNNLSSSSIYVGQKLAIKQTANTATPKAEVKTEAPAAEKQAAPVVKENTNTNTATTEKKETTTQQQTAPkAPT 299

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  423 PTTQPAPATSPTTQpAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATS 492
Cdd:PRK13914   300 EAAKPAPAPSTNTN-ANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNSNTNANQGSSNNNSNSSASA 368
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 410-537 4.46e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 41.62  E-value: 4.46e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  410 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPsVSSSASTQPAP 489
Cdd:PRK08691   357 AFAPLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAGP-VSNQENNDVPP 435

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1831519558  490 ATSgttQPAPA-TSATTQPAPATSATTQPAPATSPTTQPAPATSATTQS 537
Cdd:PRK08691   436 WED---APDEAqTAAGTAQTSAKSIQTASEAETPPENQVSKNKAADNET 481
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 295-375 4.49e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 41.03  E-value: 4.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  295 TQPAPATSPTTQPAPATSPTTQPAPATSPttqpapatSPTTQPAPATSPTTQP-TPATSPTTQPTPATSPTTQPTPATSP 373
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPPA--------SPASGMSAAPASAVEEkSPSEESATATAPESPSTSVPSSGSDA 146


                   ..
gi 1831519558  374 TT 375
Cdd:TIGR00601  147 AS 148
PTZ00395 PTZ00395
Sec24-related protein; Provisional
 240-426 4.51e-03

Sec24-related protein; Provisional


Pssm-ID: 185594 [Multi-domain]  Cd Length: 1560  Bit Score: 41.60  E-value: 4.51e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPATSpttQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPapatsPTTQPAP 319
Cdd:PTZ00395   383 PHSNASYNCAAYSNAAQSNAAQS---NAGFSNAGYSNPGNSNPGYNNAPNSNTPYNNPPNSNTPYSNP-----PNSNPPY 454

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  320 ATSPTTQpAPATSPTTQPAPATSPTTQPTpATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAP 399
Cdd:PTZ00395   455 SNLPYSN-TPYSNAPLSNAPPSSAKDHHS-AYHAAYQHRAANQPAANLPTANQPAANNFHGAAGNSVGNPFASRPFGSAP 532

                          170       180
                   ....*....|....*....|....*...
gi 1831519558  400 -ATSPTTQPAPATSPTTQPAPATSPTTQ 426
Cdd:PTZ00395   533 yGGNAATTADPNGIAKREDHPEGGTNRQ 560
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 394-468 4.61e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 41.27  E-value: 4.61e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  394 TTQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPgtsPTTQPAPATSPTTQPS 468
Cdd:PRK14965   381 APAPPSAAWGAPTPAAPAAP---PPAAAPPVPPAAPARPAAARPAPAPAPPAAAAP---PARSADPAAAASAGDR 449
PRK14963 PRK14963
DNA polymerase III subunits gamma and tau; Provisional
 377-463 4.64e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184927 [Multi-domain]  Cd Length: 504  Bit Score: 41.36  E-value: 4.64e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  377 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSptTQPAPATSPttqPAPATSPTTQPAPATSPTTQPTPGTSPTTQ 456
Cdd:PRK14963   346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP--TAAATAAGA---PLPDFDPRPRGPPAPEPARSAEAPPLVAPA 420


                   ....*..
gi 1831519558  457 PAPATSP 463
Cdd:PRK14963   421 AAPAGLA 427
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
405-481 4.68e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 41.52  E-value: 4.68e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  405 TQPAPATSPTTQPAPATSPttqPAPATSPTTQPAPATSPTTQPTPgtsPTTQPAPATSPTTQPS-PATNPTTQPSVSS 481
Cdd:COG5373     38 AEAAEAASAPAEPEPEAAA---AATAAAPEAAPAPVPEAPAAPPA---AAEAPAPAAAAPPAEAePAAAPAAASSFEE 109
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
390-459 4.71e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 40.77  E-value: 4.71e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  390 ATSPTTQPAPATSPTTQPAPA---TSPTTQ---PAPATSPTTQPAP-ATSPTTQPAPATSPTTQPTPGTSPTTQPAP 459
Cdd:PRK13042    20 VITTTTQAANATTPSSTKVEApqsTPPSTKveaPQSKPNATTPPSTkVEAPQQTPNATTPSSTKVETPQSPTTKQVP 96
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 382-522 4.82e-03

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 41.43  E-value: 4.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  382 SPTTQPAPATSPTTQPAPATSPTTQPAP------------ATSP--------------TTQPAPATSPTTQPAPATSPTT 435
Cdd:PRK12678     2 APSDAAATATTDTAPRARGGGLAGMKLPelralakqlgikGTSGmrkgeliaaikearGGGAAAAAATPAAPAAAARRAA 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  436 QPAPATSPTTQP-TPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSAT 514
Cdd:PRK12678    82 RAAAAARQAEQPaAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAA 161


                   ....*...
gi 1831519558  515 TQPAPATS 522
Cdd:PRK12678   162 ERTEEEER 169
Cuticle_3 pfam11018
Pupal cuticle protein C1; Insect cuticles are composite structures whose mechanical properties ...
 240-354 4.84e-03

Pupal cuticle protein C1; Insect cuticles are composite structures whose mechanical properties are optimized for biological function. The major components are the chitin filament system and the cuticular proteins, and the cuticle's properties are determined largely by the interactions between these two sets of molecules. The proteins can be ordered by species.


Pssm-ID: 431611 [Multi-domain]  Cd Length: 182  Bit Score: 39.75  E-value: 4.84e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  240 PASTSTQPAPASSPTTQPAPAtspttqPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAP 319
Cdd:pfam11018   48 PKTLYSAPAPVVTKSAYAAPA------PVVTTYAHAAPAPVVAKTVYAAPAVVVYAAPAPVVAKTVTYAAPAVHYAAPAP 121

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1831519558  320 ATSPTTQPAPATSPTTQPAPATSPT-TQPTPATSPT 354
Cdd:pfam11018  122 VVAKTVYAAPAVQHYAAPAPVEAAAhAAPVVAAAPA 157
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 356-402 4.94e-03

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 41.24  E-value: 4.94e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1831519558  356 QPTPATSPTTQPTPATSPTTQPAPATSPTTQPA--PATSPTTQPAPATS 402
Cdd:PRK06975   274 TAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPnpPATPPEPPARRGRG 322
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 395-477 4.95e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 41.14  E-value: 4.95e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  395 TQPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGtspttQPAPATSPTTQPSPATNPT 474
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPG-----SLAPPPPPPPGPAGAAPGA 87


                   ...
gi 1831519558  475 TQP 477
Cdd:NF041121    88 ALP 90
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 378-527 4.95e-03

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 41.01  E-value: 4.95e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  378 APATSPTTQPAPATSpTTQPAPATSPTTQPAPATSPTTQPAPATspttQPAPATSPTTQPAPATSPTTQPTPGTSPTTQP 457
Cdd:cd23959    100 AMAPDESLGPFRAAR-VPNPFSASSSTQRETHKTAQVAPPKAEP----QTAPVTPFGQLPMFGQHPPPAKPLPAAAAAQQ 174

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  458 APAtSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQP 527
Cdd:cd23959    175 SSA-SPGEVASPFASGTVSASPFATATDTAPSSGAPDGFPAEASAPSPFAAPASAASFPAAPVANGEAAT 243
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 366-412 5.02e-03

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 41.24  E-value: 5.02e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1831519558  366 QPTPATSPTTQPAPATSPTTQPAPATSPTTQPA--PATSPTTQPAPATS 412
Cdd:PRK06975   274 TAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPnpPATPPEPPARRGRG 322
PRK14963 PRK14963
DNA polymerase III subunits gamma and tau; Provisional
 317-397 5.10e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184927 [Multi-domain]  Cd Length: 504  Bit Score: 40.98  E-value: 5.10e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  317 PAPATSPTTQPAPATSPTTQ-PAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTT 395
Cdd:PRK14963   346 PSEGVAAVAPPAPAPADLTQrLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAPEPARSAEAPPLVAPAAAPAG 425


                   ..
gi 1831519558  396 QP 397
Cdd:PRK14963   426 LA 427
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 312-405 5.27e-03

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 41.23  E-value: 5.27e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  312 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT--QPTPATSPTTQPTPATSPTTQPTpATSPTTQPAPATSPTTQPAP 389
Cdd:PLN02217   568 STNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAghLGSPPATPSKIVSPSTSPPASHL-GSPSTTPSSPESSIKVASTE 646

                           90
                   ....*....|....*.
gi 1831519558  390 ATSPTTQPAPATSPTT 405
Cdd:PLN02217   647 TASPESSIKVASTESS 662
PHA03325 PHA03325
nuclear-egress-membrane-like protein; Provisional
 320-478 5.34e-03

nuclear-egress-membrane-like protein; Provisional


Pssm-ID: 223044  Cd Length: 418  Bit Score: 41.02  E-value: 5.34e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  320 ATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPttqPAPATSPTTQPAPAtsPTTQPAP 399
Cdd:PHA03325   259 SSAFMLNSSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLP---PPPVRRPRVKHPEA--GKEEPDG 333

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  400 ATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTsPTTQPAPATSPTTQPSPATNPTTQPS 478
Cdd:PHA03325   334 ARNAEAKEPAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAASSFLEDDDFGS-PPLDLTTSLRHMPSPSVTSAPEPPSI 411
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 465-538 5.38e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 40.65  E-value: 5.38e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  465 TQPSPATNPTTQPSVSSSASTQPAPAT--SGTTQPAPATSATTQP-APATSATTQPAPATSPTTQPAPATSATTQSV 538
Cdd:TIGR00601   75 SKPKTGTGKVAPPAATPTSAPTPTPSPpaSPASGMSAAPASAVEEkSPSEESATATAPESPSTSVPSSGSDAASTLV 151
PHA03325 PHA03325
nuclear-egress-membrane-like protein; Provisional
 239-355 5.39e-03

nuclear-egress-membrane-like protein; Provisional


Pssm-ID: 223044  Cd Length: 418  Bit Score: 41.02  E-value: 5.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  239 VPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQpapaTSPTTQPAPATSPTTQPA 318
Cdd:PHA03325   307 LPASLPPPPVRRPRVKHPEAGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQNKDSGS----TGPGSSLAAASSFLEDDD 382

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1831519558  319 PATspttqPAPATSPTTQPAPATSPTTQPTPATSPTT 355
Cdd:PHA03325   383 FGS-----PPLDLTTSLRHMPSPSVTSAPEPPSIPLT 414
PRK12495 PRK12495
hypothetical protein; Provisional
 358-461 5.44e-03

hypothetical protein; Provisional


Pssm-ID: 183558 [Multi-domain]  Cd Length: 226  Bit Score: 39.85  E-value: 5.44e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  358 TPATSPTTQPTPATSptTQPAPATSPTTQPAPATSPTTQPAPaTSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP 437
Cdd:PRK12495    85 TAPSDAGSQASPDDD--AQPAAEAEAADQSAPPEASSTSATD-EAATDPPATAAARDGPTPDPTAQPATPDERRSPRQRP 161

                           90       100
                   ....*....|....*....|....*.
gi 1831519558  438 APATSPTTQPTP--GTSPTTQPAPAT 461
Cdd:PRK12495   162 PVSGEPPTPSTPdaHVAGTLQAARES 187
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 322-407 5.45e-03

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 41.23  E-value: 5.45e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  322 SPTTQPAPATSPTTQPAPATSPTTQPTPATSPTT--QPTPATSPTTQPTPATSPttqpaPATSPTTQPAPATSPTTQPAP 399
Cdd:PLN02217   568 STNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAghLGSPPATPSKIVSPSTSP-----PASHLGSPSTTPSSPESSIKV 642


                   ....*...
gi 1831519558  400 ATSPTTQP 407
Cdd:PLN02217   643 ASTETASP 650
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
290-369 5.57e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 40.39  E-value: 5.57e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  290 ATSPTTQPAPATSPTTQPAPA---TSPTTQPapaTSPTTQPAPATSPTTQpapATSPTTQPTPATSPTTQPTPATSPTTQ 366
Cdd:PRK13042    20 VITTTTQAANATTPSSTKVEApqsTPPSTKV---EAPQSKPNATTPPSTK---VEAPQQTPNATTPSSTKVETPQSPTTK 93


                   ...
gi 1831519558  367 PTP 369
Cdd:PRK13042    94 QVP 96
PRK04654 PRK04654
sec-independent translocase; Provisional
 365-468 5.64e-03

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 39.80  E-value: 5.64e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  365 TQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 444
Cdd:PRK04654   103 TSATPVATPLELAHADLSASAQVDAAAGAEPGAGQAHTPVPAPAPVIAQAQPIAPAPHQTLVPAPHDTIVPAPHAAHLPS 182

                           90       100
                   ....*....|....*....|....*
gi 1831519558  445 TQPTP-GTSPTTQPAPATSPTTQPS 468
Cdd:PRK04654   183 APATPvSVAPVDAGTSASPTPSEPT 207
flhF PRK06995
flagellar biosynthesis protein FlhF;
385-493 5.64e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 41.11  E-value: 5.64e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  385 TQPAPATSPTTQPAPATSPTTQPApATSPTTQPAPATSPTTQPAPATSPTTQPApatspTTQPTPGTSPTTQPAPATSPT 464
Cdd:PRK06995    54 PAAAAPAAAQPPPAAAPAAVSRPA-APAAEPAPWLVEHAKRLTAQREQLVARAA-----APAAPEAQAPAAPAERAAAEN 127

                           90       100
                   ....*....|....*....|....*....
gi 1831519558  465 TQPSPATNPTTQPSVSSSASTQPAPATSG 493
Cdd:PRK06995   128 AARRLARAAAAAPRPRVPADAAAAVADAV 156
PDHac_trf_long TIGR01348
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; This model ...
 388-551 5.70e-03

pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model. [Energy metabolism, Pyruvate dehydrogenase]


Pssm-ID: 273566 [Multi-domain]  Cd Length: 546  Bit Score: 41.01  E-value: 5.70e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  388 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAP-ATSPTTQPTPGTSPTTQPAPATSPTTQ 466
Cdd:TIGR01348   77 AGAQAQAEAKKEAAPAPTAGAPAPAAQAQAAPAAGQSSGVQEVTVPDIGDIEkVTVIEVLVKVGDTVSADQSLITLESDK 156

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  467 -----PSPATNPTTQPSVS-----SSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTtqPAPATSATTQ 536
Cdd:TIGR01348  157 asmevPAPASGVVKSVKVKvgdsvPTGDLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPA--AAKAQAPAPQ 234

                          170
                   ....*....|....*
gi 1831519558  537 SVPVVTTQTTMGTSP 551
Cdd:TIGR01348  235 QAGTQNPAKVDHAAP 249
dnaA PRK14086
chromosomal replication initiator protein DnaA;
358-540 5.71e-03

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 40.96  E-value: 5.71e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  358 TPATSPTTQPTPATSPTTQPapaTSPTTQPAPATSPTTQPAPATSPTTQPAPaTSPTTQPA-PATSPTTQPAPATspttq 436
Cdd:PRK14086    89 DPSAGEPAPPPPHARRTSEP---ELPRPGRRPYEGYGGPRADDRPPGLPRQD-QLPTARPAyPAYQQRPEPGAWP----- 159

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  437 PAPATSPTTQPTPGTSPttqPAPATSPtTQPSPATNPTTQPSVSSSASTQPA---PATSGTTQPAPATSATTQPAPATSA 513
Cdd:PRK14086   160 RAADDYGWQQQRLGFPP---RAPYASP-ASYAPEQERDREPYDAGRPEYDQRrrdYDHPRPDWDRPRRDRTDRPEPPPGA 235

                          170       180
                   ....*....|....*....|....*..
gi 1831519558  514 TTQPAPATSPTTQPAPATSATTQSVPV 540
Cdd:PRK14086   236 GHVHRGGPGPPERDDAPVVPIRPSAPG 262
Not5 COG5665
CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription];
307-554 5.79e-03

CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription];


Pssm-ID: 444384 [Multi-domain]  Cd Length: 874  Bit Score: 41.19  E-value: 5.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  307 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQ 386
Cdd:COG5665    171 VVVTTMIAVPSAPAAPPNAVDYSVLVPIAAQDPAASVSTPQAFNASATSGRSQHIVQAAKRVGVEWWGDPSLLATPPATP 250

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  387 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQ 466
Cdd:COG5665    251 ATEEKSSQQPKSQPTSPSGGTTPPSTNQLTTSNTPTSTAKAQPQPPTKKQPAKEPPSDTASGNPSAPSVLINSDSPTSED 330

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  467 PSPATNPTTQpsvSSSASTQPAPATSGTTQPA-PATSATTQPAPATSATT--QPAPATSPTTQPAPATSATTQSVPVVTT 543
Cdd:COG5665    331 PATASVPTTE---ETTAFTTPSSVPSTPAEKDtPATDLATPVSPTPPETSvdKKVSPDSATSSTKSEKEGGTASSPMPPN 407

                          250
                   ....*....|.
gi 1831519558  544 QTTMGTSPTTA 554
Cdd:COG5665    408 IAIGAKDDVDA 418
PRK14963 PRK14963
DNA polymerase III subunits gamma and tau; Provisional
 307-387 5.95e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184927 [Multi-domain]  Cd Length: 504  Bit Score: 40.98  E-value: 5.95e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  307 PAPATSPTTQPAPATSPTTQ-PAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTT 385
Cdd:PRK14963   346 PSEGVAAVAPPAPAPADLTQrLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAPEPARSAEAPPLVAPAAAPAG 425


                   ..
gi 1831519558  386 QP 387
Cdd:PRK14963   426 LA 427
PHA03294 PHA03294
envelope glycoprotein H; Provisional
 320-554 6.01e-03

envelope glycoprotein H; Provisional


Pssm-ID: 223035  Cd Length: 835  Bit Score: 41.23  E-value: 6.01e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  320 ATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPaTSPTTQPTPATSPTTQPAPATSPTTQP-APATSPTTQPA 398
Cdd:PHA03294    16 AALAGATPAPATPDEGGRATYWVGQVDAWFRARDDFRDTN-FGRLWIPSLPNGADLSTIFLRPPAEFVlTGASSPLGQLL 94

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  399 --PATSPTTQPAPATSPTTQPAPATSPTTQPAPatSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQ 476
Cdd:PHA03294    95 fvLPTALLGQPTFAKLPARAPTGRLPPPVAPLS--GLLGNPNLAPYLRTRHLVDFSVVPDPRSLTRWVFDRSDTAATKAH 172

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  477 PSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATsPTTQPAPATSATTQSVPVVTTQTTMGTSPTTA 554
Cdd:PHA03294   173 PSGVALPPPRAPPPRNTTDPATIKPNDHLNPATTFFLDAELLLRT-PKRSVYVSPFAAVWPVDYWHTGELVFGCDAAL 249
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 415-500 6.13e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 40.76  E-value: 6.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  415 TQPAPATSPTTQPAPATSPttQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPttQPSVSSSASTQPAPATSGT 494
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLA--PPPPPPPGPAGAAPGAALP 90


                   ....*..
gi 1831519558  495 TQ-PAPA 500
Cdd:NF041121    91 VRvPAPP 97
PRK11901 PRK11901
hypothetical protein; Reviewed
 238-315 6.14e-03

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 40.44  E-value: 6.14e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  238 VVPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT 315
Cdd:PRK11901   181 VAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVPPATSGKPKSGAASARALSSAPASHYTLQLSSASRSDT 258
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 304-382 6.20e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.82  E-value: 6.20e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1831519558  304 TTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPAtsPTTQPTPATSPTTQPAPATS 382
Cdd:PTZ00144   120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAK--PPPTPVARADPRETRVPMSR 196
PRK12495 PRK12495
hypothetical protein; Provisional
 283-411 6.23e-03

hypothetical protein; Provisional


Pssm-ID: 183558 [Multi-domain]  Cd Length: 226  Bit Score: 39.85  E-value: 6.23e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  283 PTTQpapatSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT-TQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPAT 361
Cdd:PRK12495    62 PTCQ-----QPVTEDGAAGDDAGDGAEATAPSDAGSQASPDDdAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAA 136

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1831519558  362 SPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPA-TSPTTQPAPAT 411
Cdd:PRK12495   137 RDGPTPDPTAQPATPDERRSPRQRPPVSGEPPTPSTPDAhVAGTLQAARES 187
PRK14963 PRK14963
DNA polymerase III subunits gamma and tau; Provisional
 387-488 6.26e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184927 [Multi-domain]  Cd Length: 504  Bit Score: 40.98  E-value: 6.26e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  387 PAPATSPTTQPAPATSPTTQ-PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTT 465
Cdd:PRK14963   346 PSEGVAAVAPPAPAPADLTQrLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAPEPARSAEAPPLVAPAAAPAG 425

                           90       100
                   ....*....|....*....|...
gi 1831519558  466 QPSPATNPTTQPSVSSSASTQPA 488
Cdd:PRK14963   426 LALRWRDVLAALKMQLRAFLREA 448
motB PRK05996
MotB family protein;
306-388 6.28e-03

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 40.84  E-value: 6.28e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  306 QPAPATSPTTQPAPATSPTTqpAPATSPTTQPAPATSPTTQPTPAT-SPTTQPTPATSPTTQPTPATSPTTQPAPATSPT 384
Cdd:PRK05996   197 DLLPPGQAREQAQGAKSATA--APATVPQAAPLPQAQPKKAATEEElIADAKKAATGEPAANAAKAAKPEPMPDDQQKEA 274


                   ....
gi 1831519558  385 TQPA 388
Cdd:PRK05996   275 EQLQ 278
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
348-491 6.38e-03

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 40.49  E-value: 6.38e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  348 TPATSPTTQPtpATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPAT---SPTTQPAPATSPTTQPAPATSPT 424
Cdd:PRK13335    18 TGAITVTTQS--VKAEKIQSTKVDKVPTLKAERLAMINITAGANSATTQAANTRqerTPKLEKAPNTNEEKTSASKIEKI 95

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  425 TQPaPATSPTTQPAPATSPTTQPTPGTSP-TTQPAPatSPTTQPSpaTNpTTQPSVSSSASTQPAPAT 491
Cdd:PRK13335    96 SQP-KQEEQKSLNISATPAPKQEQSQTTTeSTTPKT--KVTTPPS--TN-TPQPMQSTKSDTPQSPTI 157
PTZ00395 PTZ00395
Sec24-related protein; Provisional
 428-554 6.43e-03

Sec24-related protein; Provisional


Pssm-ID: 185594 [Multi-domain]  Cd Length: 1560  Bit Score: 41.21  E-value: 6.43e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  428 APATSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQP 507
Cdd:PTZ00395   412 AGYSNPGNSNPGYNNAPNSNTPYNNPPNSNTPYSNPPNSNPPYSNLPYSNTPYSNAPLSNAPPSSAKDHHSAYHAAYQHR 491

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1831519558  508 APATSATTQPApATSPTTQPAPATSATTQSVPVVT----TQTTMGTSPTTA 554
Cdd:PTZ00395   492 AANQPAANLPT-ANQPAANNFHGAAGNSVGNPFASrpfgSAPYGGNAATTA 541
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
243-363 6.43e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 40.56  E-value: 6.43e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  243 TSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTtqPAPAtSPTTQPAPAtSPTTQPA---PATSPTTQPAP 319
Cdd:PRK12373   198 TEEAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAA--PVPP-SEAARPKSA-DAETNAAlktPATAPKAAAKN 273

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1831519558  320 ATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSP 363
Cdd:PRK12373   274 AKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIA 317
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 262-355 6.51e-03

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 40.84  E-value: 6.51e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  262 SPTTQPAPATSPTTQPAPATSPTTQPAPATSPTT--QPAPATSPTTQPAPATSPTTQPApATSPTTQPAPATSPTTQPAP 339
Cdd:PLN02217   568 STNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAghLGSPPATPSKIVSPSTSPPASHL-GSPSTTPSSPESSIKVASTE 646

                           90
                   ....*....|....*.
gi 1831519558  340 ATSPTTQPTPATSPTT 355
Cdd:PLN02217   647 TASPESSIKVASTESS 662
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
315-392 6.57e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 41.14  E-value: 6.57e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1831519558  315 TQPAPATSPTTQPAPATSPttqPAPATSPTTQPTPatsPTTQPTPATSPTTQPTPATSPTTQPAPatsPTTQPAPATS 392
Cdd:COG5373     38 AEAAEAASAPAEPEPEAAA---AATAAAPEAAPAP---VPEAPAAPPAAAEAPAPAAAAPPAEAE---PAAAPAAASS 106
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
280-349 6.65e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 40.39  E-value: 6.65e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  280 ATSPTTQPAPATSPTTQPAPA---TSPTTQ---PAPATSPTTQPAP-ATSPTTQPAPATSPTTQPAPATSPTTQPTP 349
Cdd:PRK13042    20 VITTTTQAANATTPSSTKVEApqsTPPSTKveaPQSKPNATTPPSTkVEAPQQTPNATTPSSTKVETPQSPTTKQVP 96
PRK14963 PRK14963
DNA polymerase III subunits gamma and tau; Provisional
 267-364 6.65e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184927 [Multi-domain]  Cd Length: 504  Bit Score: 40.59  E-value: 6.65e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  267 PAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSptTQPAPATSPttqPAPATSPTTQPAPATSPT--TQPAPATSPT 344
Cdd:PRK14963   346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP--TAAATAAGA---PLPDFDPRPRGPPAPEPArsAEAPPLVAPA 420

                           90       100
                   ....*....|....*....|
gi 1831519558  345 TQPTPATSPTTQPTPATSPT 364
Cdd:PRK14963   421 AAPAGLALRWRDVLAALKMQ 440
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 314-388 6.71e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 40.88  E-value: 6.71e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  314 TTQPAPATSPTTQPAPATSPttqPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPA 388
Cdd:PRK14965   381 APAPPSAAWGAPTPAAPAAP---PPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGDRWRA 452
PRK10672 PRK10672
endolytic peptidoglycan transglycosylase RlpA;
328-412 6.73e-03

endolytic peptidoglycan transglycosylase RlpA;


Pssm-ID: 236733 [Multi-domain]  Cd Length: 361  Bit Score: 40.43  E-value: 6.73e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  328 APATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQptpATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP 407
Cdd:PRK10672   206 TPSVQPAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLG---APTTLAPGVLEGSEPTPTAPSSAPATAPAAAAPQAAAT 282


                   ....*
gi 1831519558  408 APATS 412
Cdd:PRK10672   283 SSSAS 287
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
277-446 6.75e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 40.42  E-value: 6.75e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  277 PAPATSPTTQPAPATSptTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPapaTSPTTQPTPATSPTTQ 356
Cdd:pfam05539  169 KTAVTTSKTTSWPTEV--SHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTS---SNPEPQTEPPPSQRGP 243

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  357 PTPATSPTTQPTPATSPTtqpapATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP--TTQPAPATSPTTQPAPATSPT 434
Cdd:pfam05539  244 SGSPQHPPSTTSQDQSTT-----GDGQEHTQRRKTPPATSNRRSPHSTATPPPTTKRqeTGRPTPRPTATTQSGSSPPHS 318

                          170
                   ....*....|..
gi 1831519558  435 TQPAPATSPTTQ 446
Cdd:pfam05539  319 SPPGVQANPTTQ 330
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 338-527 6.86e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.92  E-value: 6.86e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  338 APATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAP-ATSPTTQPAPATSPttq 416
Cdd:PHA03307   769 AEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSeSSGPARPPGAAARP--- 845

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  417 PAPATSPTTQPAPATSPTTQPA-----PATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPAT 491
Cdd:PHA03307   846 PPARSSESSKSKPAAAGGRARGkngrrRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPDPRG 925

                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 1831519558  492 SGTTQPAPATSATTQPAPATSATTQPAPATSPTTQP 527
Cdd:PHA03307   926 GFRRVPPGDLHTPAPSAAALAAYCPPEVVAELVDHP 961
PLN03237 PLN03237
DNA topoisomerase 2; Provisional
 278-521 6.91e-03

DNA topoisomerase 2; Provisional


Pssm-ID: 215641 [Multi-domain]  Cd Length: 1465  Bit Score: 41.00  E-value: 6.91e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  278 APATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPttQP 357
Cdd:PLN03237  1204 KPAPKKTTKKASESETTEETYGSSAMETENVAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLDSAP--AQ 1281

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  358 TPATSPTTQPTPATSPTTQPAPATSPttqpaPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSpTTQPAPATSPTTQP 437
Cdd:PLN03237  1282 SAKMEETVKAVPARRAAARKKPLASV-----SVISDSDDDDDDFAVEVSLAERLKKKGGRKPAAA-NKKAAKPPAAAKKR 1355

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  438 APATSPTTQ----------PTPGTSPTTQPAPAtspttQPSPAtnPTTQPSVSSSASTqpaPATSGTTQPAPATSATTQP 507
Cdd:PLN03237  1356 GPATVQSGQklltemlkpaEAIGISPEKKVRKM-----RASPF--NKKSGSVLGRAAT---NKETESSENVSGSSSSEKD 1425

                          250
                   ....*....|....
gi 1831519558  508 APATSATTQPAPAT 521
Cdd:PLN03237  1426 EIDVSAKPRPQRAN 1439
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 388-540 6.93e-03

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 40.62  E-value: 6.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  388 APATSPTTQPAPATSpTTQPAPATSPTTQPAPATSPTTQPAPATspttQPAPATSPTTQPTPGTSPTTQPAPATSPTTQP 467
Cdd:cd23959    100 AMAPDESLGPFRAAR-VPNPFSASSSTQRETHKTAQVAPPKAEP----QTAPVTPFGQLPMFGQHPPPAKPLPAAAAAQQ 174

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1831519558  468 SPAtnpttqpsvssSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTTQPAPATSATTQSVPV 540
Cdd:cd23959    175 SSA-----------SPGEVASPFASGTVSASPFATATDTAPSSGAPDGFPAEASAPSPFAAPASAASFPAAPV 236
PLN02217 PLN02217
probable pectinesterase/pectinesterase inhibitor
 332-417 6.97e-03

probable pectinesterase/pectinesterase inhibitor


Pssm-ID: 215130 [Multi-domain]  Cd Length: 670  Bit Score: 40.84  E-value: 6.97e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  332 SPTTQPAPATSPTTQPTPATSPTTQPTPATSPTT--QPTPATSPTTQPAPATSPttqpaPATSPTTQPAPATSPTTQPAP 409
Cdd:PLN02217   568 STNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAghLGSPPATPSKIVSPSTSP-----PASHLGSPSTTPSSPESSIKV 642


                   ....*...
gi 1831519558  410 ATSPTTQP 417
Cdd:PLN02217   643 ASTETASP 650
PRK11633 PRK11633
cell division protein DedD; Provisional
 416-520 7.02e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 39.60  E-value: 7.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  416 QPAPATSPTTQPAPATSPTTQPAPATSPTTqPTPGTSPTTQPAPATSPTTQPSPATNPTTQPsvsssaSTQPAPATSgtT 495
Cdd:PRK11633    51 DEPDMMPAATQALPTQPPEGAAEAVRAGDA-AAPSLDPATVAPPNTPVEPEPAPVEPPKPKP------VEKPKPKPK--P 121

                           90       100
                   ....*....|....*....|....*
gi 1831519558  496 QPAPATSATTQPAPATSATTQPAPA 520
Cdd:PRK11633   122 QQKVEAPPAPKPEPKPVVEEKAAPT 146
PHA03292 PHA03292
envelope glycoprotein I; Provisional
 304-439 7.24e-03

envelope glycoprotein I; Provisional


Pssm-ID: 177577  Cd Length: 413  Bit Score: 40.33  E-value: 7.24e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  304 TTQPAPATSPTTQPAPA-TSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATS 382
Cdd:PHA03292   179 TARPEPAAGYVATPTPRyLNAVTTSTYSRSMSSQPAGAATATPTPTLDTGLTTVAPPNETVVTGETALLCHWFQPSTRVP 258

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  383 PTTQPAPATSPTTQPAPATSPTTQPAPATSPttQPAPATSPTTQPAPATSPTTQPAP 439
Cdd:PHA03292   259 TLYLHLLGTTGNLTEDVLLTEDSEILRTPPP--DPSSSRSPGAGDDFKQTNSTSPKR 313
PRK10856 PRK10856
cytoskeleton protein RodZ;
240-313 7.41e-03

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 40.39  E-value: 7.41e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  240 PASTSTQPAPASSPTTQPAPA-TSPTTQPAPAtsPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSP 313
Cdd:PRK10856   179 AAPVDTTPTNSQTPAVATAPApAVDPQQNAVV--APSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADP 251
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
400-469 7.52e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 40.00  E-value: 7.52e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1831519558  400 ATSPTTQPAPATSPTTQPAPA---TSPTTQ---PAPATSPTTQPAP-ATSPTTQPTPGTSPTTQPAPATSPTTQPSP 469
Cdd:PRK13042    20 VITTTTQAANATTPSSTKVEApqsTPPSTKveaPQSKPNATTPPSTkVEAPQQTPNATTPSSTKVETPQSPTTKQVP 96
PRK12757 PRK12757
cell division protein FtsN; Provisional
 376-455 7.75e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 39.64  E-value: 7.75e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  376 QPAPATSPTTQPAPATSPTTQPAPatspTTQPAPATSPTTQPAPATspTTQPAPATSPttQPAPATSPTTQPTPGTSPTT 455
Cdd:PRK12757   110 QTPQVPRSTVQIQQQAQQQQPPAT----TAQPQPVTPPRQTTAPVQ--PQTPAPVRTQ--PAAPVTQAVEAPKVEAEKEK 181
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 369-442 7.75e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.44  E-value: 7.75e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  369 PATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAtsPTTQPAPATSPTTQPAPATS 442
Cdd:PTZ00144   125 PAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAK--PPPTPVARADPRETRVPMSR 196
PHA01929 PHA01929
putative scaffolding protein
 261-363 7.90e-03

putative scaffolding protein


Pssm-ID: 177328  Cd Length: 306  Bit Score: 40.04  E-value: 7.90e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  261 TSPTTQPAPATSP--TTQPAPATSPTTQPAPATSPTtQPAPATSPTTqPAPATSPTTQPAPATSPTTQPAPATSPTTQPA 338
Cdd:PHA01929     1 TTQNEQQLPPGLAglVANVPPAAAPTPQPNPVIQPQ-APVQPGQPGA-PQQLAIPTQQPQPVPTSAMTPHVVQQAPAQPA 78

                           90       100
                   ....*....|....*....|....*
gi 1831519558  339 PATSPTTQPTPATSPTTQPTPATSP 363
Cdd:PHA01929    79 PAAPPAAGAALPEALEVPPPPAFTP 103
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 240-305 8.08e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 40.26  E-value: 8.08e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  240 PASTSTQpAPASSPTTQPAPATSPTTQPAPATSPTTQPapaTSPTTQPAPATSPTTQPAPATSPTT 305
Cdd:TIGR00601   87 PAATPTS-APTPTPSPPASPASGMSAAPASAVEEKSPS---EESATATAPESPSTSVPSSGSDAAS 148
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 392-533 8.17e-03

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 40.66  E-value: 8.17e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  392 SPTTQPAPATSPTTQPAPATSPTTQPAP------------ATSP--------------TTQPAPATSPTTQPAPATSPTT 445
Cdd:PRK12678     2 APSDAAATATTDTAPRARGGGLAGMKLPelralakqlgikGTSGmrkgeliaaikearGGGAAAAAATPAAPAAAARRAA 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  446 QPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSATTQPAPATSATTQPAPATSPTT 525
Cdd:PRK12678    82 RAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAA 161


                   ....*...
gi 1831519558  526 QPAPATSA 533
Cdd:PRK12678   162 ERTEEEER 169
PRK04654 PRK04654
sec-independent translocase; Provisional
 335-449 8.26e-03

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 39.41  E-value: 8.26e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  335 TQPAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 414
Cdd:PRK04654   103 TSATPVATPLELAHADLSASAQVDAAAGAEPGAGQAHTPVPAPAPVIAQAQPIAPAPHQTLVPAPHDTIVPAPHAAHLPS 182

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1831519558  415 tqpAPATSPTTQPAPATSPTTQPAPATSPTTQPTP 449
Cdd:PRK04654   183 ---APATPVSVAPVDAGTSASPTPSEPTKIQEKQP 214
PRK10856 PRK10856
cytoskeleton protein RodZ;
466-554 8.60e-03

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 40.01  E-value: 8.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  466 QPSPATNPTTQPSVSSSASTQPAPATsgttQPAPATSATTQPAPATSATTQPAPATSPTTQ--------PAPATSATTQS 537
Cdd:PRK10856   149 QSSAELSQNSGQSVPLDTSTTTDPAT----TPAPAAPVDTTPTNSQTPAVATAPAPAVDPQqnavvapsQANVDTAATPA 224

                           90
                   ....*....|....*..
gi 1831519558  538 VPVVTTQTTMGTSPTTA 554
Cdd:PRK10856   225 PAAPATPDGAAPLPTDQ 241
KREPA2 cd23959
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...
 367-492 8.67e-03

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.


Pssm-ID: 467780 [Multi-domain]  Cd Length: 424  Bit Score: 40.24  E-value: 8.67e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  367 PTPATSPTTQPAPATSPTTQP--APATSPTTQPAPATSPTTQPAPATsPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 444
Cdd:cd23959    118 PFSASSSTQRETHKTAQVAPPkaEPQTAPVTPFGQLPMFGQHPPPAK-PLPAAAAAQQSSASPGEVASPFASGTVSASPF 196

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1831519558  445 TQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATS 492
Cdd:cd23959    197 ATATDTAPSSGAPDGFPAEASAPSPFAAPASAASFPAAPVANGEAATP 244
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 425-510 8.72e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 40.37  E-value: 8.72e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  425 TQPAPATSPTTQPAPATSPttQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSAStqPAPATSGTTQPAPATSAT 504
Cdd:NF041121    15 MGRAAAPPSPEGPAPTAAS--QPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAP--PPPPPPGPAGAAPGAALP 90


                   ....*..
gi 1831519558  505 TQ-PAPA 510
Cdd:NF041121    91 VRvPAPP 97
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 418-471 8.81e-03

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 40.47  E-value: 8.81e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1831519558  418 APATSPTTQPAPATSPTTQPAPATSPTTQPTPGTSPTTQPA--PATSPTTQPSPAT 471
Cdd:PRK06975   266 ADAAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPnpPATPPEPPARRGR 321
PHA03325 PHA03325
nuclear-egress-membrane-like protein; Provisional
 239-385 9.04e-03

nuclear-egress-membrane-like protein; Provisional


Pssm-ID: 223044  Cd Length: 418  Bit Score: 40.25  E-value: 9.04e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  239 VPASTSTQPAPASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPttqPAPATSPT--TQPAPATSPTTQPAPATSPTTQ 316
Cdd:PHA03325   268 LPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLP---PPPVRRPRvkHPEAGKEEPDGARNAEAKEPAQ 344

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  317 PAPATSPTTQPAPATSPTTQPAPATSPTTQPTPATSPTTQPTPA-TSPTTQPTPATSPTTQPAPATSPTT 385
Cdd:PHA03325   345 PATSTSSKGSSSAQNKDSGSTGPGSSLAAASSFLEDDDFGSPPLdLTTSLRHMPSPSVTSAPEPPSIPLT 414
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 359-432 9.05e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.05  E-value: 9.05e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  359 PATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAtsPTTQPAPATSPTTQPAPATS 432
Cdd:PTZ00144   125 PAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAK--PPPTPVARADPRETRVPMSR 196
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 248-322 9.05e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.05  E-value: 9.05e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1831519558  248 APASSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPAtsPTTQPAPATSPTTQPAPATS 322
Cdd:PTZ00144   124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAK--PPPTPVARADPRETRVPMSR 196
PRK10672 PRK10672
endolytic peptidoglycan transglycosylase RlpA;
338-422 9.43e-03

endolytic peptidoglycan transglycosylase RlpA;


Pssm-ID: 236733 [Multi-domain]  Cd Length: 361  Bit Score: 40.05  E-value: 9.43e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  338 APATSPTTQPTPATSPTTQPTPATSPTTQpTPATSPTTQPAPatSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQP 417
Cdd:PRK10672   206 TPSVQPAPAPQGDVLPVSNSTLKSEDPTG-APVTSSGFLGAP--TTLAPGVLEGSEPTPTAPSSAPATAPAAAAPQAAAT 282


                   ....*
gi 1831519558  418 APATS 422
Cdd:PRK10672   283 SSSAS 287
Endomucin pfam07010
Endomucin; This family consists of several mammalian endomucin proteins. Endomucin is an early ...
 345-505 9.49e-03

Endomucin; This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.


Pssm-ID: 429246 [Multi-domain]  Cd Length: 260  Bit Score: 39.47  E-value: 9.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  345 TQPTPATSPTTQPTPATSPTTQPTPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPTTQPAPATSPT 424
Cdd:pfam07010   23 TDVQNTANITLSTTPSTTAETASTPKTTNLNTPTGGTSPVGTTSSELSKTSLVSTTISLTTTKKGVGTTTTDVSKNESST 102

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  425 TQPapaTSPTTQPAPATSPTTQPTPGTSPTTQPAPATSPTTQPSPATNPTTQPSVSSSASTQPAPATSGTTQPAPATSAT 504
Cdd:pfam07010  103 TKP---TVTSTPLSNAVSTLQSSQHKTENQSSIKTTETSGVSTLPPDASPSETATLSSISVTTPENISQSQGTEDAKNAS 179


                   .
gi 1831519558  505 T 505
Cdd:pfam07010  180 T 180
PRK14963 PRK14963
DNA polymerase III subunits gamma and tau; Provisional
 337-423 9.85e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184927 [Multi-domain]  Cd Length: 504  Bit Score: 40.21  E-value: 9.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1831519558  337 PAPATSPTTQPTPATSPTTQPTPATSPTTQPTPATSptTQPAPATSPttqPAPATSPTTQPAPATSPTTQPAPATSPTTQ 416
Cdd:PRK14963   346 PSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAP--TAAATAAGA---PLPDFDPRPRGPPAPEPARSAEAPPLVAPA 420


                   ....*..
gi 1831519558  417 PAPATSP 423
Cdd:PRK14963   421 AAPAGLA 427
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
243-309 9.87e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 39.62  E-value: 9.87e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1831519558  243 TSTQPAPASSPTTQPAPA---TSPTTQ---PAPATSPTTQPAP-ATSPTTQPAPATSPTTQPAPATSPTTQPAP 309
Cdd:PRK13042    23 TTTQAANATTPSSTKVEApqsTPPSTKveaPQSKPNATTPPSTkVEAPQQTPNATTPSSTKVETPQSPTTKQVP 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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