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Conserved domains on  [gi|1845970635|ref|NP_001370117|]
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Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein, partial [Caenorhabditis elegans]

Protein Classification

Rpl7Ae superfamily protein( domain architecture ID 1903981)

Rpl7Ae superfamily protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Rpl7Ae super family cl43397
Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure ...
 42-124 7.39e-10

Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein L7Ae or related RNA K-turn-binding protein is part of the Pathway/BioSystem: Ribosome 50S subunit


The actual alignment was detected with superfamily member COG1358:

Pssm-ID: 440969 [Multi-domain]  Cd Length: 98  Bit Score: 52.85  E-value: 7.39e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1845970635  42 RRVICGAHETLKFAQSGRVKLIFYAKNMDENNLRaasNFHSLqivCPLAGIPMIEVLTRKELSRIMNKfPYVAVVGVIDf 121
Cdd:COG1358    14 GKLVSGEEQVLKAIRKGKAKLVIIAEDASENTKK---KLLDL---CEEYGVPVVEVGTKEELGKAIGK-VGRAVVAITD- 85


                  ...
gi 1845970635 122 SGF 124
Cdd:COG1358    86 EGF 88
 
Name Accession Description Interval E-value
Rpl7Ae COG1358
Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure ...
 42-124 7.39e-10

Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein L7Ae or related RNA K-turn-binding protein is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440969 [Multi-domain]  Cd Length: 98  Bit Score: 52.85  E-value: 7.39e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1845970635  42 RRVICGAHETLKFAQSGRVKLIFYAKNMDENNLRaasNFHSLqivCPLAGIPMIEVLTRKELSRIMNKfPYVAVVGVIDf 121
Cdd:COG1358    14 GKLVSGEEQVLKAIRKGKAKLVIIAEDASENTKK---KLLDL---CEEYGVPVVEVGTKEELGKAIGK-VGRAVVAITD- 85


                  ...
gi 1845970635 122 SGF 124
Cdd:COG1358    86 EGF 88
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
 42-120 1.83e-06

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


Pssm-ID: 426153 [Multi-domain]  Cd Length: 95  Bit Score: 43.74  E-value: 1.83e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1845970635  42 RRVICGAHETLKFAQSGRVKLIFYAKNMDENNLRAAsnfhsLQIVCPLAGIPMIEVLTRKELSRIMNKFPYVAVVGVID 120
Cdd:pfam01248  14 GKLVLGLKEVTKALERGEAKLVIIAEDCDPEEKVKL-----IPALCKEKNVPYVKVPSKKELGEACGKKRPVSALAIKD 87
PRK07714 PRK07714
YlxQ family RNA-binding protein;
42-127 1.45e-03

YlxQ family RNA-binding protein;


Pssm-ID: 236077  Cd Length: 100  Bit Score: 35.91  E-value: 1.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1845970635  42 RRVICGAHETLKFAQSGRVKLIFYAKNMDENNLRAASNfhslqiVCPLAGIPMIEVLTRKELSRIMNKFPYVaVVGVIDf 121
Cdd:PRK07714   17 RKVISGEELVLKEVRSGKAKLVLLSEDASVNTTKKITD------KCTYYNVPMRKVENRQQLGHAIGKDERV-VVAVLD- 88


                  ....*.
gi 1845970635 122 SGFERE 127
Cdd:PRK07714   89 EGFAKK 94
 
Name Accession Description Interval E-value
Rpl7Ae COG1358
Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure ...
 42-124 7.39e-10

Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein L7Ae or related RNA K-turn-binding protein is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440969 [Multi-domain]  Cd Length: 98  Bit Score: 52.85  E-value: 7.39e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1845970635  42 RRVICGAHETLKFAQSGRVKLIFYAKNMDENNLRaasNFHSLqivCPLAGIPMIEVLTRKELSRIMNKfPYVAVVGVIDf 121
Cdd:COG1358    14 GKLVSGEEQVLKAIRKGKAKLVIIAEDASENTKK---KLLDL---CEEYGVPVVEVGTKEELGKAIGK-VGRAVVAITD- 85


                  ...
gi 1845970635 122 SGF 124
Cdd:COG1358    86 EGF 88
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
 42-120 1.83e-06

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


Pssm-ID: 426153 [Multi-domain]  Cd Length: 95  Bit Score: 43.74  E-value: 1.83e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1845970635  42 RRVICGAHETLKFAQSGRVKLIFYAKNMDENNLRAAsnfhsLQIVCPLAGIPMIEVLTRKELSRIMNKFPYVAVVGVID 120
Cdd:pfam01248  14 GKLVLGLKEVTKALERGEAKLVIIAEDCDPEEKVKL-----IPALCKEKNVPYVKVPSKKELGEACGKKRPVSALAIKD 87
RPL30E COG1911
Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 43-120 3.59e-04

Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L30E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441515 [Multi-domain]  Cd Length: 97  Bit Score: 37.50  E-value: 3.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1845970635  43 RVICGAHETLKFAQSGRVKLIFYAKNMDEnNLRAasnfhSLQIVCPLAGIPMIEV-LTRKELSRIMNKfPY-VAVVGVID 120
Cdd:COG1911    16 KVVLGSKQTIKAIKLGKAKLVILAANCPP-EIRE-----DIEYYAKLSNVPVYVYpGTSVELGALCGK-PFrVSALAIID 88
PRK07714 PRK07714
YlxQ family RNA-binding protein;
42-127 1.45e-03

YlxQ family RNA-binding protein;


Pssm-ID: 236077  Cd Length: 100  Bit Score: 35.91  E-value: 1.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1845970635  42 RRVICGAHETLKFAQSGRVKLIFYAKNMDENNLRAASNfhslqiVCPLAGIPMIEVLTRKELSRIMNKFPYVaVVGVIDf 121
Cdd:PRK07714   17 RKVISGEELVLKEVRSGKAKLVLLSEDASVNTTKKITD------KCTYYNVPMRKVENRQQLGHAIGKDERV-VVAVLD- 88


                  ....*.
gi 1845970635 122 SGFERE 127
Cdd:PRK07714   89 EGFAKK 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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