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Conserved domains on  [gi|1845971790|ref|NP_001370341|]
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Protein YIPF [Caenorhabditis elegans]

Protein Classification

Yip1 family protein( domain architecture ID 10522553)

Yip1 family protein localizes to the Golgi complex and may function in regulating membrane dynamics in the endomembrane system; similar to vertebrate YIPF proteins that may play roles in the anterograde transport of a limited subset of cargo molecules from the ER to the Golgi and/or from the Golgi to downstream compartments

Gene Ontology:  GO:0031267|GO:0016192
PubMed:  31417902
TCDB:  9.B.135

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Yip1 pfam04893
Yip1 domain; The Yip1 integral membrane domain contains four transmembrane alpha helices. The ...
 104-256 1.15e-06

Yip1 domain; The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterized by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases.


:

Pssm-ID: 461468 [Multi-domain]  Cd Length: 173  Bit Score: 47.82  E-value: 1.15e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1845971790 104 PDLWGPFWVSVTLVFAIGIFGNLAQFIENDGAKG-TYGSDFRMVTSASTLIFLYVVIVPLLLYGLLWNRRSEllHPYVDL 182
Cdd:pfam04893  19 PDLLGPLLILLLLLALLAALALLIGGTQVGWALSlTQLSALAVAIGALIGILLGLLILAALLYWLGRLFGGR--GSFKQT 96

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1845971790 183 VCLYGYSLAIFIPVSVL-WIVDIGWFRWALI-FASVGLSGTVLARAIWPAVQNDNNKMIAFGTVISVVVLHFLLAF 256
Cdd:pfam04893  97 LAVAGYALLPLILGGLLsGLLPLLWLPLSLVgLLFGIWSLYLLYLGLKEAHGLSSKKAAALIAALLLLLLLLLLVL 172
 
Name Accession Description Interval E-value
Yip1 pfam04893
Yip1 domain; The Yip1 integral membrane domain contains four transmembrane alpha helices. The ...
 104-256 1.15e-06

Yip1 domain; The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterized by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases.


Pssm-ID: 461468 [Multi-domain]  Cd Length: 173  Bit Score: 47.82  E-value: 1.15e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1845971790 104 PDLWGPFWVSVTLVFAIGIFGNLAQFIENDGAKG-TYGSDFRMVTSASTLIFLYVVIVPLLLYGLLWNRRSEllHPYVDL 182
Cdd:pfam04893  19 PDLLGPLLILLLLLALLAALALLIGGTQVGWALSlTQLSALAVAIGALIGILLGLLILAALLYWLGRLFGGR--GSFKQT 96

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1845971790 183 VCLYGYSLAIFIPVSVL-WIVDIGWFRWALI-FASVGLSGTVLARAIWPAVQNDNNKMIAFGTVISVVVLHFLLAF 256
Cdd:pfam04893  97 LAVAGYALLPLILGGLLsGLLPLLWLPLSLVgLLFGIWSLYLLYLGLKEAHGLSSKKAAALIAALLLLLLLLLLVL 172
 
Name Accession Description Interval E-value
Yip1 pfam04893
Yip1 domain; The Yip1 integral membrane domain contains four transmembrane alpha helices. The ...
 104-256 1.15e-06

Yip1 domain; The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterized by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases.


Pssm-ID: 461468 [Multi-domain]  Cd Length: 173  Bit Score: 47.82  E-value: 1.15e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1845971790 104 PDLWGPFWVSVTLVFAIGIFGNLAQFIENDGAKG-TYGSDFRMVTSASTLIFLYVVIVPLLLYGLLWNRRSEllHPYVDL 182
Cdd:pfam04893  19 PDLLGPLLILLLLLALLAALALLIGGTQVGWALSlTQLSALAVAIGALIGILLGLLILAALLYWLGRLFGGR--GSFKQT 96

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1845971790 183 VCLYGYSLAIFIPVSVL-WIVDIGWFRWALI-FASVGLSGTVLARAIWPAVQNDNNKMIAFGTVISVVVLHFLLAF 256
Cdd:pfam04893  97 LAVAGYALLPLILGGLLsGLLPLLWLPLSLVgLLFGIWSLYLLYLGLKEAHGLSSKKAAALIAALLLLLLLLLLVL 172
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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