NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1899405729|ref|NP_001373725|]
View 

galectin-3 isoform 1 [Danio rerio]

Protein Classification

galectin family protein( domain architecture ID 10658251)

galectin family protein may exclusively bind beta-galactosides such as lactose in a manner independent of metal ions

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Gal-bind_lectin smart00908
Galactoside-binding lectin; Animal lectins display a wide variety of architectures. They are ...
 246-362 8.35e-47

Galactoside-binding lectin; Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. Galectins (previously S-lectins) bind exclusively beta-galactosides like lactose. They do not require metal ions for activity. Galectins are found predominantly, but not exclusively in mammals. Their function is unclear. They are developmentally regulated and may be involved in differentiation, cellular regulation and tissue construction.


:

Pssm-ID: 214904  Cd Length: 122  Bit Score: 155.44  E-value: 8.35e-47
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729  246 GIMPHLLITIVGEPIIGGDRFHVDFMRGHE--VVFHFNPRFHENTVVRNSQLGGLWGPEEREGGFPFVQGRQFELKILVE 323
Cdd:smart00908   3 GLSPGSSITIRGIVLPDAKRFSINLQCGPNadIALHFNPRFDEGTIVRNSKQNGKWGKEERSGGFPFQPGQPFELEILVE 82

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1899405729  324 TDGFKVAVDGVHLLEFEHRTgGMEDVTRLRIDGDVTLFS 362
Cdd:smart00908  83 EDEFKVAVNGQHFLEFPHRL-PLESIDTLEISGDVQLTS 120
PRK07764 super family cl35613
DNA polymerase III subunits gamma and tau; Validated
 11-158 4.13e-06

DNA polymerase III subunits gamma and tau; Validated


The actual alignment was detected with superfamily member PRK07764:

Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 48.83  E-value: 4.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729  11 PDDVPSEASKNKHTNPSAPGNGAPPPTNPGWPGAAPGGPHFPPSGGPvqPAGFPQTWPSAPGSFPPGPGAPGQFPGAPAA 90
Cdd:PRK07764  615 PAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPD--ASDGGDGWPAKAGGAAPAAPPPAPAPAAPAA 692

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1899405729  91 P-GQFPGAPAAPGGYPPGPGVPGQFPPNPGAPGQFPSMPGQFPPGGAPMP-----YPVPGQFPSPPGAPQGPNP 158
Cdd:PRK07764  693 PaGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPpepddPPDPAGAPAQPPPPPAPAP 766
 
Name Accession Description Interval E-value
Gal-bind_lectin smart00908
Galactoside-binding lectin; Animal lectins display a wide variety of architectures. They are ...
 246-362 8.35e-47

Galactoside-binding lectin; Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. Galectins (previously S-lectins) bind exclusively beta-galactosides like lactose. They do not require metal ions for activity. Galectins are found predominantly, but not exclusively in mammals. Their function is unclear. They are developmentally regulated and may be involved in differentiation, cellular regulation and tissue construction.


Pssm-ID: 214904  Cd Length: 122  Bit Score: 155.44  E-value: 8.35e-47
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729  246 GIMPHLLITIVGEPIIGGDRFHVDFMRGHE--VVFHFNPRFHENTVVRNSQLGGLWGPEEREGGFPFVQGRQFELKILVE 323
Cdd:smart00908   3 GLSPGSSITIRGIVLPDAKRFSINLQCGPNadIALHFNPRFDEGTIVRNSKQNGKWGKEERSGGFPFQPGQPFELEILVE 82

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1899405729  324 TDGFKVAVDGVHLLEFEHRTgGMEDVTRLRIDGDVTLFS 362
Cdd:smart00908  83 EDEFKVAVNGQHFLEFPHRL-PLESIDTLEISGDVQLTS 120
GLECT cd00070
Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as ...
 238-362 1.64e-46

Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.


Pssm-ID: 238025  Cd Length: 127  Bit Score: 154.71  E-value: 1.64e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729 238 PYDLPLRAGIMPHLLITIVGEPIIGGDRFHVDFMRG-HEVVFHFNPRFHENTVVRNSQLGGLWGPEEREGGFPFVQGRQF 316
Cdd:cd00070     1 PYKLPLPGGLKPGSTLTVKGRVLPNAKRFSINLGTGsSDIALHFNPRFDENVIVRNSFLNGNWGPEERSGGFPFQPGQPF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1899405729 317 ELKILVETDGFKVAVDGVHLLEFEHRTgGMEDVTRLRIDGDVTLFS 362
Cdd:cd00070    81 ELTILVEEDKFQIFVNGQHFFSFPHRL-PLESIDYLSINGDVSLTS 125
Gal-bind_lectin pfam00337
Galactoside-binding lectin; This family contains galactoside binding lectins. The family also ...
 246-362 4.18e-45

Galactoside-binding lectin; This family contains galactoside binding lectins. The family also includes enzymes such as human eosinophil lysophospholipase (EC:3.1.1.5).


Pssm-ID: 459768  Cd Length: 124  Bit Score: 150.87  E-value: 4.18e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729 246 GIMPHLLITIVGEPIIGGDRFHVDFMRGHE----VVFHFNPRFHENTVVRNSQLGGLWGPEEREGGFPFVQGRQFELKIL 321
Cdd:pfam00337   3 GLQPGSSLTIKGIVLPDAQRFSINLQTGVGpsddIALHFNPRFDENVIVRNSRQNGQWGQEEREGGFPFQPGQPFELTIL 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1899405729 322 VETDGFKVAVDGVHLLEFEHRTgGMEDVTRLRIDGDVTLFS 362
Cdd:pfam00337  83 VGDDHFKIYVNGQHFTTFKHRL-PPEDIDALQVRGDVKLTS 122
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 11-158 4.13e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 48.83  E-value: 4.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729  11 PDDVPSEASKNKHTNPSAPGNGAPPPTNPGWPGAAPGGPHFPPSGGPvqPAGFPQTWPSAPGSFPPGPGAPGQFPGAPAA 90
Cdd:PRK07764  615 PAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPD--ASDGGDGWPAKAGGAAPAAPPPAPAPAAPAA 692

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1899405729  91 P-GQFPGAPAAPGGYPPGPGVPGQFPPNPGAPGQFPSMPGQFPPGGAPMP-----YPVPGQFPSPPGAPQGPNP 158
Cdd:PRK07764  693 PaGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPpepddPPDPAGAPAQPPPPPAPAP 766
PLN03133 PLN03133
beta-1,3-galactosyltransferase; Provisional
 308-366 5.90e-03

beta-1,3-galactosyltransferase; Provisional


Pssm-ID: 215596 [Multi-domain]  Cd Length: 636  Bit Score: 38.63  E-value: 5.90e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1899405729 308 FPFVQGRQFELKILVETDGFKVAVDGVHLLEFEHRtggmED-----VTRLRIDGDVTLFSAAPS 366
Cdd:PLN03133  298 FPFKQGYLSVATLRVGTEGIQMTVDGKHITSFAYR----ETlepwlVSEVRISGDLKLISVLAS 357
 
Name Accession Description Interval E-value
Gal-bind_lectin smart00908
Galactoside-binding lectin; Animal lectins display a wide variety of architectures. They are ...
 246-362 8.35e-47

Galactoside-binding lectin; Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. Galectins (previously S-lectins) bind exclusively beta-galactosides like lactose. They do not require metal ions for activity. Galectins are found predominantly, but not exclusively in mammals. Their function is unclear. They are developmentally regulated and may be involved in differentiation, cellular regulation and tissue construction.


Pssm-ID: 214904  Cd Length: 122  Bit Score: 155.44  E-value: 8.35e-47
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729  246 GIMPHLLITIVGEPIIGGDRFHVDFMRGHE--VVFHFNPRFHENTVVRNSQLGGLWGPEEREGGFPFVQGRQFELKILVE 323
Cdd:smart00908   3 GLSPGSSITIRGIVLPDAKRFSINLQCGPNadIALHFNPRFDEGTIVRNSKQNGKWGKEERSGGFPFQPGQPFELEILVE 82

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1899405729  324 TDGFKVAVDGVHLLEFEHRTgGMEDVTRLRIDGDVTLFS 362
Cdd:smart00908  83 EDEFKVAVNGQHFLEFPHRL-PLESIDTLEISGDVQLTS 120
GLECT cd00070
Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as ...
 238-362 1.64e-46

Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.


Pssm-ID: 238025  Cd Length: 127  Bit Score: 154.71  E-value: 1.64e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729 238 PYDLPLRAGIMPHLLITIVGEPIIGGDRFHVDFMRG-HEVVFHFNPRFHENTVVRNSQLGGLWGPEEREGGFPFVQGRQF 316
Cdd:cd00070     1 PYKLPLPGGLKPGSTLTVKGRVLPNAKRFSINLGTGsSDIALHFNPRFDENVIVRNSFLNGNWGPEERSGGFPFQPGQPF 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1899405729 317 ELKILVETDGFKVAVDGVHLLEFEHRTgGMEDVTRLRIDGDVTLFS 362
Cdd:cd00070    81 ELTILVEEDKFQIFVNGQHFFSFPHRL-PLESIDYLSINGDVSLTS 125
Gal-bind_lectin pfam00337
Galactoside-binding lectin; This family contains galactoside binding lectins. The family also ...
 246-362 4.18e-45

Galactoside-binding lectin; This family contains galactoside binding lectins. The family also includes enzymes such as human eosinophil lysophospholipase (EC:3.1.1.5).


Pssm-ID: 459768  Cd Length: 124  Bit Score: 150.87  E-value: 4.18e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729 246 GIMPHLLITIVGEPIIGGDRFHVDFMRGHE----VVFHFNPRFHENTVVRNSQLGGLWGPEEREGGFPFVQGRQFELKIL 321
Cdd:pfam00337   3 GLQPGSSLTIKGIVLPDAQRFSINLQTGVGpsddIALHFNPRFDENVIVRNSRQNGQWGQEEREGGFPFQPGQPFELTIL 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1899405729 322 VETDGFKVAVDGVHLLEFEHRTgGMEDVTRLRIDGDVTLFS 362
Cdd:pfam00337  83 VGDDHFKIYVNGQHFTTFKHRL-PPEDIDALQVRGDVKLTS 122
GLECT smart00276
Galectin; Galectin - galactose-binding lectin
 239-362 1.62e-40

Galectin; Galectin - galactose-binding lectin


Pssm-ID: 214596  Cd Length: 128  Bit Score: 139.29  E-value: 1.62e-40
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729  239 YDLPLRAGIMPHLLITIVGEPIIGGDRFHVDFMRG-HEVVFHFNPRFHENTVVRNSQLGGLWGPEEREGGFPFVQGRQFE 317
Cdd:smart00276   1 FTLPIPGGLKPGQTLTVRGIVLPDAKRFSINLLTGgDDIALHFNPRFNENKIVCNSKLNGSWGSEEREGGFPFQPGQPFD 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1899405729  318 LKILVETDGFKVAVDGVHLLEFEHRTgGMEDVTRLRIDGDVTLFS 362
Cdd:smart00276  81 LTIIVQPDHFQIFVNGVHITTFPHRL-PLESIDYLSINGDVQLTS 124
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 11-158 4.13e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 48.83  E-value: 4.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729  11 PDDVPSEASKNKHTNPSAPGNGAPPPTNPGWPGAAPGGPHFPPSGGPvqPAGFPQTWPSAPGSFPPGPGAPGQFPGAPAA 90
Cdd:PRK07764  615 PAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPD--ASDGGDGWPAKAGGAAPAAPPPAPAPAAPAA 692

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1899405729  91 P-GQFPGAPAAPGGYPPGPGVPGQFPPNPGAPGQFPSMPGQFPPGGAPMP-----YPVPGQFPSPPGAPQGPNP 158
Cdd:PRK07764  693 PaGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPpepddPPDPAGAPAQPPPPPAPAP 766
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 7-158 3.61e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 45.75  E-value: 3.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729   7 ADAIPDDVPSEASKNKHTNPSAPGNGAPPPTNPGWPGAAPGGPHFPPSGGPVQPAGFPqtwPSAPGSFPPGPGAPGQFPG 86
Cdd:PRK07764  625 AAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPP---PAPAPAAPAAPAGAAPAQP 701

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1899405729  87 APAAPGQFPGAPAAPGGYPPGPGVPGQFPPNPGAPGQFPSMPGQFPPGGAPMPYPVPGQFPSPPGAPQGPNP 158
Cdd:PRK07764  702 APAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAA 773
PHA03247 PHA03247
large tegument protein UL36; Provisional
 8-159 4.25e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.70  E-value: 4.25e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729    8 DAIPDDVPSEASKNKHTNPSAPGNGAPPPTNPGWPGAAPGGPHFPPS---GGPVQPAGfPQTWPSAPGSFPPGPGAPGQF 84
Cdd:PHA03247  2803 DPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSlplGGSVAPGG-DVRRRPPSRSPAAKPAAPARP 2881

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729   85 P----GAPAAPGQFPGAPAAPGGYPPGPGVPGQFPPNPGAPGQFPSMPG-QFPPGGAPMPYPVPGQFPSPPGAPQGPNPN 159
Cdd:PHA03247  2882 PvrrlARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQpPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQ 2961
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 15-160 5.16e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 45.36  E-value: 5.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729  15 PSEASKNKHTNPSAPGN-----GAPPPTNPGWPGAAPGGPhFPPSGGPVQPAGFPQTWPSAPGSFPPGPGAPGQfPGAPA 89
Cdd:PRK07764  636 PAEASAAPAPGVAAPEHhpkhvAVPDASDGGDGWPAKAGG-AAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAAT-PPAGQ 713

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1899405729  90 APGQFPGAPAAPGGYPPGPGVPGQFPPNPGAPGQFPSMPGQFPPGGAPMPYPVPGQFPSPPGAPQGPNPNV 160
Cdd:PRK07764  714 ADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEE 784
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 7-158 7.71e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.59  E-value: 7.71e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729   7 ADAIPDDVPSEASKNKHTNPSA---PGNGAPPPTNPGWPGAAPGGPHFPPSGGPVQPAGFPQTWPSAPGSFPPGPGAPGQ 83
Cdd:PRK07764  641 AAPAPGVAAPEHHPKHVAVPDAsdgGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQ 720

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1899405729  84 FPGAPAAPGQFPGAPAAPGGYPPGPGVPGQFPPNPGAPGQFPSMPGQFPPGGAPMPYPVPGQFPSPPGAPQGPNP 158
Cdd:PRK07764  721 PPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDD 795
PHA03378 PHA03378
EBNA-3B; Provisional
 15-156 1.07e-04

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 44.29  E-value: 1.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729  15 PSEASKNKHTNPS-APGNGAPPPTNPGwPGAAPGGPhfppsGGPVQPagfPQtwpSAPGSFPPGPGAPGQFPGAPAAPGQ 93
Cdd:PHA03378  676 PSPTGANTMLPIQwAPGTMQPPPRAPT-PMRPPAAP-----PGRAQR---PA---AATGRARPPAAAPGRARPPAAAPGR 743

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1899405729  94 FPGAPAAPGGYPPGPGVPGQFPPNPGAPGQFPSMPgqfPPGGAPMPYPVPGQFPSPPGAPQGP 156
Cdd:PHA03378  744 ARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQP---PPQAPPAPQQRPRGAPTPQPPPQAG 803
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
26-158 1.23e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.10  E-value: 1.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729  26 PSAPGNGAPPPTNPGWPGAAPGGPHFPPSGGPVQPAGFPQTWPSAPGSFPPGPGAPGQFPGAPAAPGQFPGAPAAPGGYP 105
Cdd:PRK12323  365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGP 444

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1899405729 106 PGPGVPGQFPPNPGAPGQFPSMPGQFPPGGAPMPYPVPGQFPSPPG-APQGPNP 158
Cdd:PRK12323  445 GGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPApADDDPPP 498
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 26-199 8.45e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.51  E-value: 8.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729  26 PSAPGNGAPPPTNPGWPGAAPGGPHFPPSGGPVQPAGFPQtwpsAPGSFPPGPGAPGQFPGAPAAPGQFPGAPAAPGGYP 105
Cdd:PRK07764  590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAP----AGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDG 665

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729 106 PGPGVPGQFPPNPGAPGQFPSMPGQFPPGGAPMPYPVPGQfPSPPGAPQGPNPNVPYPPGPSGPGMYGPGGPGAFPPDGG 185
Cdd:PRK07764  666 GDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP-AATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPE 744

                         170
                  ....*....|....
gi 1899405729 186 PGYGGGMFPPVPPG 199
Cdd:PRK07764  745 PDDPPDPAGAPAQP 758
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 30-159 1.15e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.12  E-value: 1.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729  30 GNGAPPPTNPGWPGAAPGGPHFPPSGGPVQPAGFPQTWPSAPGsfPPGPGAPGQFPGAPAAPGQFPGAPAAPGGYPPGPG 109
Cdd:PRK07764  389 GGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQP--APAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQP 466

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1899405729 110 VPGQFPPNPGAPGQFPSMPGQFPPGGAPMPypvpgqfPSPPGAPQGPNPN 159
Cdd:PRK07764  467 APAPAAAPEPTAAPAPAPPAAPAPAAAPAA-------PAAPAAPAGADDA 509
PHA03378 PHA03378
EBNA-3B; Provisional
 31-156 1.91e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 40.44  E-value: 1.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729  31 NGAPPPTNPGWPGAAPGGPHFPPSGGPvqpaGFPQTWPSAPGSFPPGPGAPGQFPGAPAAPGQFPGAPAAPGGYPPGPGV 110
Cdd:PHA03378  665 TWTQIGHIPYQPSPTGANTMLPIQWAP----GTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAA 740

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1899405729 111 PGQFPPNPGAPGQfpSMPGQFPPGGAPMPYPVPGQfPSPPGAPQGP 156
Cdd:PHA03378  741 PGRARPPAAAPGR--ARPPAAAPGRARPPAAAPGA-PTPQPPPQAP 783
PHA03264 PHA03264
envelope glycoprotein D; Provisional
 11-82 3.87e-03

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 38.83  E-value: 3.87e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1899405729  11 PDDVPSEASKNKHTNPSAPG---NGAPPPTNPGWPGAAPGGPHFPPSGGPVQPAGFPQTWPSAPGSF--PPGPGAPG 82
Cdd:PHA03264  279 GDDRPEAKPEPGPVEDGAPGretGGEGEGPEPAGRDGAAGGEPKPGPPRPAPDADRPEGWPSLEAITfpPPTPATPA 355
PLN03133 PLN03133
beta-1,3-galactosyltransferase; Provisional
 308-366 5.90e-03

beta-1,3-galactosyltransferase; Provisional


Pssm-ID: 215596 [Multi-domain]  Cd Length: 636  Bit Score: 38.63  E-value: 5.90e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1899405729 308 FPFVQGRQFELKILVETDGFKVAVDGVHLLEFEHRtggmED-----VTRLRIDGDVTLFSAAPS 366
Cdd:PLN03133  298 FPFKQGYLSVATLRVGTEGIQMTVDGKHITSFAYR----ETlepwlVSEVRISGDLKLISVLAS 357
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 30-137 7.29e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 38.51  E-value: 7.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729  30 GNGAPPPTNPGWPGAAPGGPHFPPSGGPVQPAGFPQTWPSAPGSFPPGPGAPGQFPgAPAAP-GQFPGAPAAPGGYPPGP 108
Cdd:PRK14959  375 GGGASAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAP-SPRVPwDDAPPAPPRSGIPPRPA 453

                          90       100
                  ....*....|....*....|....*....
gi 1899405729 109 GVPGQFPPNPGAPGQFPSMPGQFPPGGAP 137
Cdd:PRK14959  454 PRMPEASPVPGAPDSVASASDAPPTLGDP 482
PHA03247 PHA03247
large tegument protein UL36; Provisional
 15-155 7.55e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 38.38  E-value: 7.55e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729   15 PSEASKNKHTNPSAPGNGAPP--PTNPgwpgAAPGGPHFPPSggPVQPAGFPQTWPSAPGSFPPGPGAPgQFPGAPAAPG 92
Cdd:PHA03247  2722 PPGPAAARQASPALPAAPAPPavPAGP----ATPGGPARPAR--PPTTAGPPAPAPPAAPAAGPPRRLT-RPAVASLSES 2794

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1899405729   93 QFPGAPAAPGGYPPGPGVPGQFPPNPGAPgqfPSMPGQFPPGGAPMPYPVPGQFPSPPGAPQG 155
Cdd:PHA03247  2795 RESLPSPWDPADPPAAVLAPAAALPPAAS---PAGPLPPPTSAQPTAPPPPPGPPPPSLPLGG 2854
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 43-158 8.98e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 38.04  E-value: 8.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899405729  43 GAAPGGPHFPPSGGPVQPAGFPQTWPSAPGSFPPGPGAPGQFPGAPAAPGQFPGAPAAPGGYPPGPGVPGQFPPNPGAPG 122
Cdd:PRK07764  384 RLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPS 463

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1899405729 123 QFPSMPGQFPPGGAPMPYPVPGQFPSPPGAPQGPNP 158
Cdd:PRK07764  464 AQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAA 499
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH