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Conserved domains on  [gi|1972295764|ref|NP_001379164|]
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Nematode cuticle collagen N-terminal domain-containing protein [Caenorhabditis elegans]

Protein Classification

cuticular collagen family protein( domain architecture ID 18387949)

cuticular collagen family protein is a structural macromolecule of the extracellular matrix containing triple helix domains that form tight interactions and stabilize supramolecular aggregates

Gene Ontology:  GO:0042302|GO:0005581
PubMed:  1916105|21421911

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Col_cuticle_N smart01088
Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is ...
 18-70 2.20e-20

Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens. Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins.


:

Pssm-ID: 198156  Cd Length: 53  Bit Score: 82.51  E-value: 2.20e-20
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1972295764   18 KVAFFGIAVSTIATLTAIVAVPMLYNYMQHVQSSLQSEVEFCAHRSNGLWDEY 70
Cdd:smart01088   1 LVAYVAVAVSTVAVLSALVTLPSIYNDIQSFQSELLDEMDEFKARADDAWNEM 53
gly_rich_SclB super family cl45768
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 129-303 3.21e-07

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


The actual alignment was detected with superfamily member NF038329:

Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 51.44  E-value: 3.21e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972295764 129 GAAGPAGSPGQDGAPGNDGAPGAPGNPGQD--ASEDQTAGPdsfcfdcpAGPPGPSGAPGQKGPSGAPGAPGQSGGASLP 206
Cdd:NF038329  132 GEQGPRGDRGETGPAGPAGPPGPQGERGEKgpAGPQGEAGP--------QGPAGKDGEAGAKGPAGEKGPQGPRGETGPA 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972295764 207 GPPGPAGPPGPSGQPGSNGNAGAPGAPGQvVDVPGTPGPAGPPGPPGPAGAPGQPGQSGSAQPGGPGPQGDAGAPGAPGQ 286
Cdd:NF038329  204 GEQGPAGPAGPDGEAGPAGEDGPAGPAGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGP 282

                         170
                  ....*....|....*..
gi 1972295764 287 PGQAGAPGQDGDSGSEG 303
Cdd:NF038329  283 VGPAGKDGQNGKDGLPG 299
 
Name Accession Description Interval E-value
Col_cuticle_N smart01088
Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is ...
 18-70 2.20e-20

Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens. Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins.


Pssm-ID: 198156  Cd Length: 53  Bit Score: 82.51  E-value: 2.20e-20
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1972295764   18 KVAFFGIAVSTIATLTAIVAVPMLYNYMQHVQSSLQSEVEFCAHRSNGLWDEY 70
Cdd:smart01088   1 LVAYVAVAVSTVAVLSALVTLPSIYNDIQSFQSELLDEMDEFKARADDAWNEM 53
Col_cuticle_N pfam01484
Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is ...
 21-69 3.26e-16

Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens, see pfam01391. Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins.


Pssm-ID: 460226  Cd Length: 50  Bit Score: 71.34  E-value: 3.26e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1972295764  21 FFGIAVSTIATLTAIVAVPMLYNYMQHVQSSLQSEVEFCAHRSNGLWDE 69
Cdd:pfam01484   1 YVAVAFSTVAILSSLITLPSIYNDIQELQSEVLDEMDEFKARSDDAWNE 49
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 129-303 3.21e-07

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 51.44  E-value: 3.21e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972295764 129 GAAGPAGSPGQDGAPGNDGAPGAPGNPGQD--ASEDQTAGPdsfcfdcpAGPPGPSGAPGQKGPSGAPGAPGQSGGASLP 206
Cdd:NF038329  132 GEQGPRGDRGETGPAGPAGPPGPQGERGEKgpAGPQGEAGP--------QGPAGKDGEAGAKGPAGEKGPQGPRGETGPA 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972295764 207 GPPGPAGPPGPSGQPGSNGNAGAPGAPGQvVDVPGTPGPAGPPGPPGPAGAPGQPGQSGSAQPGGPGPQGDAGAPGAPGQ 286
Cdd:NF038329  204 GEQGPAGPAGPDGEAGPAGEDGPAGPAGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGP 282

                         170
                  ....*....|....*..
gi 1972295764 287 PGQAGAPGQDGDSGSEG 303
Cdd:NF038329  283 VGPAGKDGQNGKDGLPG 299
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 128-303 3.91e-07

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 51.06  E-value: 3.91e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972295764 128 TGAAGPAGSPGQDGAPGNDGAPGAPGNPGQDASEDQTAGPDSFCFDCPAGPPGPSGAPGQKGPSGAPGAPGQsggaslpG 207
Cdd:NF038329  161 KGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD-------G 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972295764 208 PPGPAGPPGPSGQPGSNGNAGAPGAPGQVVDVPGTPGPAGPPGPPGPAGAPGQPGQSGSAQPGGPGPQGDAGAPGAPGQP 287
Cdd:NF038329  234 QQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLP 313

                         170
                  ....*....|....*.
gi 1972295764 288 GQAGAPGQDGDSGSEG 303
Cdd:NF038329  314 GKDGKDGQPGKDGLPG 329
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 129-315 8.53e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.12  E-value: 8.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972295764 129 GAAGPAGS--PGQDGAPGNDGAPGAPGNPGQDASEDQTAGPDSFCFDCPAGPPGPSGAPGQKGPSGAPGAP-GQSGGASL 205
Cdd:PRK07764  593 GAAGGEGPpaPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASdGGDGWPAK 672

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972295764 206 PGPPGPAGPPGPSGQPGSNGNAGAPGAPGQ----VVDVPGTPGPAGPPGPPGPAGAPGQPGQSGSAQPGGPGPQGDAGAP 281
Cdd:PRK07764  673 AGGAAPAAPPPAPAPAAPAAPAGAAPAQPApapaATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPA 752

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1972295764 282 GAPGQPGQAGAPGQDGDSGSEGACDHCPPPRTAP 315
Cdd:PRK07764  753 GAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMA 786
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 129-303 3.63e-03

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 38.73  E-value: 3.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972295764 129 GAAGPAGSPGQDGAPGNDGAPGAPGNPGQ-DASEDQTAGPDSFcfDCPAGPPGPSGAPGQKGPSGAPGAPGQSGGASLPG 207
Cdd:NF038329  204 GEQGPAGPAGPDGEAGPAGEDGPAGPAGDgQQGPDGDPGPTGE--DGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERG 281

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972295764 208 PPGPAgppgpsgqpgsnGNAGAPGAPGqvvdvpgtpgpagppgppgpagapgqpgqsgsaQPGGPGPQGDAGAPGAPGQP 287
Cdd:NF038329  282 PVGPA------------GKDGQNGKDG---------------------------------LPGKDGKDGQNGKDGLPGKD 316

                         170
                  ....*....|....*.
gi 1972295764 288 GQAGAPGQDGDSGSEG 303
Cdd:NF038329  317 GKDGQPGKDGLPGKDG 332
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 268-305 3.97e-03

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 35.16  E-value: 3.97e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1972295764 268 QPGGPGPQGDAGAPGAPGQPGQAGAPGQDGDSGSEGAC 305
Cdd:pfam01391  20 PPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
 
Name Accession Description Interval E-value
Col_cuticle_N smart01088
Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is ...
 18-70 2.20e-20

Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens. Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins.


Pssm-ID: 198156  Cd Length: 53  Bit Score: 82.51  E-value: 2.20e-20
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1972295764   18 KVAFFGIAVSTIATLTAIVAVPMLYNYMQHVQSSLQSEVEFCAHRSNGLWDEY 70
Cdd:smart01088   1 LVAYVAVAVSTVAVLSALVTLPSIYNDIQSFQSELLDEMDEFKARADDAWNEM 53
Col_cuticle_N pfam01484
Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is ...
 21-69 3.26e-16

Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens, see pfam01391. Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins.


Pssm-ID: 460226  Cd Length: 50  Bit Score: 71.34  E-value: 3.26e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1972295764  21 FFGIAVSTIATLTAIVAVPMLYNYMQHVQSSLQSEVEFCAHRSNGLWDE 69
Cdd:pfam01484   1 YVAVAFSTVAILSSLITLPSIYNDIQELQSEVLDEMDEFKARSDDAWNE 49
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 129-303 3.21e-07

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 51.44  E-value: 3.21e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972295764 129 GAAGPAGSPGQDGAPGNDGAPGAPGNPGQD--ASEDQTAGPdsfcfdcpAGPPGPSGAPGQKGPSGAPGAPGQSGGASLP 206
Cdd:NF038329  132 GEQGPRGDRGETGPAGPAGPPGPQGERGEKgpAGPQGEAGP--------QGPAGKDGEAGAKGPAGEKGPQGPRGETGPA 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972295764 207 GPPGPAGPPGPSGQPGSNGNAGAPGAPGQvVDVPGTPGPAGPPGPPGPAGAPGQPGQSGSAQPGGPGPQGDAGAPGAPGQ 286
Cdd:NF038329  204 GEQGPAGPAGPDGEAGPAGEDGPAGPAGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGP 282

                         170
                  ....*....|....*..
gi 1972295764 287 PGQAGAPGQDGDSGSEG 303
Cdd:NF038329  283 VGPAGKDGQNGKDGLPG 299
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 128-303 3.91e-07

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 51.06  E-value: 3.91e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972295764 128 TGAAGPAGSPGQDGAPGNDGAPGAPGNPGQDASEDQTAGPDSFCFDCPAGPPGPSGAPGQKGPSGAPGAPGQsggaslpG 207
Cdd:NF038329  161 KGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD-------G 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972295764 208 PPGPAGPPGPSGQPGSNGNAGAPGAPGQVVDVPGTPGPAGPPGPPGPAGAPGQPGQSGSAQPGGPGPQGDAGAPGAPGQP 287
Cdd:NF038329  234 QQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLP 313

                         170
                  ....*....|....*.
gi 1972295764 288 GQAGAPGQDGDSGSEG 303
Cdd:NF038329  314 GKDGKDGQPGKDGLPG 329
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 129-315 8.53e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.12  E-value: 8.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972295764 129 GAAGPAGS--PGQDGAPGNDGAPGAPGNPGQDASEDQTAGPDSFCFDCPAGPPGPSGAPGQKGPSGAPGAP-GQSGGASL 205
Cdd:PRK07764  593 GAAGGEGPpaPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASdGGDGWPAK 672

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972295764 206 PGPPGPAGPPGPSGQPGSNGNAGAPGAPGQ----VVDVPGTPGPAGPPGPPGPAGAPGQPGQSGSAQPGGPGPQGDAGAP 281
Cdd:PRK07764  673 AGGAAPAAPPPAPAPAAPAAPAGAAPAQPApapaATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPA 752

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1972295764 282 GAPGQPGQAGAPGQDGDSGSEGACDHCPPPRTAP 315
Cdd:PRK07764  753 GAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMA 786
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 129-303 3.63e-03

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 38.73  E-value: 3.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972295764 129 GAAGPAGSPGQDGAPGNDGAPGAPGNPGQ-DASEDQTAGPDSFcfDCPAGPPGPSGAPGQKGPSGAPGAPGQSGGASLPG 207
Cdd:NF038329  204 GEQGPAGPAGPDGEAGPAGEDGPAGPAGDgQQGPDGDPGPTGE--DGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERG 281

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972295764 208 PPGPAgppgpsgqpgsnGNAGAPGAPGqvvdvpgtpgpagppgppgpagapgqpgqsgsaQPGGPGPQGDAGAPGAPGQP 287
Cdd:NF038329  282 PVGPA------------GKDGQNGKDG---------------------------------LPGKDGKDGQNGKDGLPGKD 316

                         170
                  ....*....|....*.
gi 1972295764 288 GQAGAPGQDGDSGSEG 303
Cdd:NF038329  317 GKDGQPGKDGLPGKDG 332
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 268-305 3.97e-03

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 35.16  E-value: 3.97e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1972295764 268 QPGGPGPQGDAGAPGAPGQPGQAGAPGQDGDSGSEGAC 305
Cdd:pfam01391  20 PPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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