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Conserved domains on  [gi|1972235581|ref|NP_001379339|]
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Major sperm protein [Caenorhabditis elegans]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 711891)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CwlO1 super family cl25603
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 133-246 3.37e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


The actual alignment was detected with superfamily member COG3883:

Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 38.27  E-value: 3.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972235581 133 SKTATDFHTALDASSVIgsdrVDQLKSILNLTKSDTALLESNITQAKQLKITLDAQLQQRKALVDEYKSKLTVLEGSYMR 212
Cdd:COG3883   111 SESFSDFLDRLSALSKI----ADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQ 186

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1972235581 213 KSAEVQRLQNELQ--NAQKAHAMKATTAPNEKNQAN 246
Cdd:COG3883   187 LSAEEAAAEAQLAelEAELAAAEAAAAAAAAAAAAA 222
 
Name Accession Description Interval E-value
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 133-246 3.37e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 38.27  E-value: 3.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972235581 133 SKTATDFHTALDASSVIgsdrVDQLKSILNLTKSDTALLESNITQAKQLKITLDAQLQQRKALVDEYKSKLTVLEGSYMR 212
Cdd:COG3883   111 SESFSDFLDRLSALSKI----ADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQ 186

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1972235581 213 KSAEVQRLQNELQ--NAQKAHAMKATTAPNEKNQAN 246
Cdd:COG3883   187 LSAEEAAAEAQLAelEAELAAAEAAAAAAAAAAAAA 222
 
Name Accession Description Interval E-value
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 133-246 3.37e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 38.27  E-value: 3.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972235581 133 SKTATDFHTALDASSVIgsdrVDQLKSILNLTKSDTALLESNITQAKQLKITLDAQLQQRKALVDEYKSKLTVLEGSYMR 212
Cdd:COG3883   111 SESFSDFLDRLSALSKI----ADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQ 186

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1972235581 213 KSAEVQRLQNELQ--NAQKAHAMKATTAPNEKNQAN 246
Cdd:COG3883   187 LSAEEAAAEAQLAelEAELAAAEAAAAAAAAAAAAA 222
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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